|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13851#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1689 fasta sequence
[CTATAGTGTTGGGTTTGGGTGTTGGTTTTTCCCCAAATCAAAAACCCTCCCGTCCCATCCCCTCCTTGTGTAGTTGTGTTGTTTGCGGCGAAACCCTAGGATTGTCTCCGGCGGCGGCGGCGGAAGGATCATGGAGCGGGCGGCAGGCGGCGTGTCGTACCAGCGGTTCCCGCGGGTGCGGATCCGCGAGCTGAAGGACGACTACGCCAAGTTCGAGCTCCGCGACACCGACGCCAGCATGGCCAACGCCCTCCGCCGCGTCATGATCGCCGAGGTCCCCACCGTCGCCATCGACCTCGTCGAGATCGAGGTCAACTCCTCCGTCCTCAACGACGAGTTCATCGCCCACCGCC-TCGGCCTCATCCCCCTCACCTCCGCCGCCGCCATGGCCATGCGCTTCTCCCGCGACTGCGACGCCTGCGACGGCGACGGCTCCTGCGAGTACTGCTCCGTCGAGTTCCACCTCGCCGCCCGCGCCACCGACTCCGACCAGACCCTCGAGGTCACCTCCAACGACCTCCGCTCCACCGACCCCAAGGTCTGCCCCGTCGACCAGGCTAGGGCCTACCAGCACGCCCTCGGCGGAACTGAACCCTTCGACACCGCCGCTGCTGCTGACCAGAGGGGCATACTAATTGTAAAGCTGCGTCGGGGCCAAGAGCTCAGGCTCCGAGCAATTGCTAGGAAGGGAATTGGCAAGGACCATGCCAAGTGGTCCCCCGCCGCTACTGTGACTTTCATGTATGAGCCTGAAATACGTATCAATGAAGAACTCATGGAAACATTGACACTCGAGGAAAAACGAAATTTGGTGGAGAGTAGCCCTACAAAAGTGTTCAACATTGATCCCAACACTCAACAGGTGGTAGTTGAGGATGCAGAGGCATATACATATGATGATGAGGTCATCAAGAAAGCAGATGCCATGGGAAAGCCCGGATTGATAGAGATCAATGCCAAGGAGGACAGCTTTATCTTCACTGTTGAAACAACTGGCGCTATCACAGCTTATGAGCTGATCATGAACGCTATCACGGTC-TTGAGGCAAAAG-TTAGATGCTGTTCGTCTACAAGATGACGATGCTGACCTTGGCG-AGCTTGGTGCCCACCTTGTTGGAGGCT-AAGCGCAGAGCTGC-TTGTCTTGTG-TTACCCACAAAG-TAGGTTTCTCTAA-CT-ATCGTGCTAGA--GGC-AAAACATGA-TGGTTT-CTTC-GTTT-GGA-TC-AATCT-AGT-ACAT-GT-AATCT-CCC-TGATC-TGT-GCC-ATT-AAAT-CTGTG-CTGGAACTTTGTGTGGACGCACCAGACTACTGTTCAATTTGATGGCAAATCGACACACCAGCCAGCTCATCTCTGGGACAAATGTGGAGCTGCTAGTAATACTGAATGCTGTTCACCTGTGATGTGTCTTTGGGACTTGCAGCCCGTCGTTTTGATTGGCCTAC-GGTANAAGANACGGCTTGCTGTGTTGAATGCTGGGTTTTGTGCAGGTCTCCCCAGATTCATATGCTCAATGCAATGTGGCGTTTAATGCTGTACATCTCCAGGTTAATTGCTGAATAGTGGTGGTACTAGATGGTTTGATGGATTCGCTGAGCGAGATGCGTGGAGTTAAGCGCGCGTGCATGTGGATCAGTACTACGATCTTGATGGATGTACCAAATGATTTGGTAATGTACTGATATTTTGGACCTAAATGTTGGATCTTTCC]
[+] EMBL AK121793 [CTATAGTGTTGGGTTTGGGTGTTGGTTTTTCCCCAAATCAAAAACCCTCCCGTCCCATCCCCTCCTTGTGTAGTTGTGTTGTTTGCGGCGAAACCCTAGGATTGTCTCCGGCGGCGGCGGCGGAAGGATCATGGAGCGGGCGGCAGGCGGCGTGTCGTACCAGCGGTTCCCGCGGGTGCGGATCCGCGAGCTGAAGGACGACTACGCCAAGTTCGAGCTCCGCGACACCGACGCCAGCATGGCCAACGCCCTCCGCCGCGTCATGATCGCCGAGGTCCCCACCGTCGCCATCGACCTCGTCGAGATCGAGGTCAACTCCTCCGTCCTCAACGACGAGTTCATCGCCCACCGCC TCGGCCTCATCCCCCTCACCTCCGCCGCCGCCATGGCCATGCGCTTCTCCCGCGACTGCGACGCCTGCGACGGCGACGGCTCCTGCGAGTACTGCTCCGTCGAGTTCCACCTCGCCGCCCGCGCCACCGACTCCGACCAGACCCTCGAGGTCACCTCCAACGACCTCCGCTCCACCGACCCCAAGGTCTGCCCCGTCGACCAGGCTAGGGCCTACCAGCACGCCCTCGGCGGAACTGAACCCTTCGACACCGCCGCTGCTGCTGACCAGAGGGGCATACTAATTGTAAAGCTGCGTCGGGGCCAAGAGCTCAGGCTCCGAGCAATTGCTAGGAAGGGAATTGGCAAGGACCATGCCAAGTGGTCCCCCGCCGCTACTGTGACTTTCATGTATGAGCCTGAAATACGTATCAATGAAGAACTCATGGAAACATTGACACTCGAGGAAAAACGAAATTTGGTGGAGAGTAGCCCTACAAAAGTGTTCAACATTGATCCCAACACTCAACAGGTGGTAGTTGAGGATGCAGAGGCATATACATATGATGATGAGGTCATCAAGAAAGCAGATGCCATGGGAAAGCCCGGATTGATAGAGATCAATGCCAAGGAGGACAGCTTTATCTTCACTGTTGAAACAACTGGCGCTATCACAGCTTATGAGCTGATCATGAACGCTATCACGGTC TTGAGGCAAAAG TTAGATGCTGTTCGTCTACAAGATGACGATGCTGACCTTGGCG AGCTTGGTGCCCACCTTGTTGGAGGCT AAGCGCAGAGCTGC TTGTCTTGTG TTACCCACAAAG TAGGTTTCTCTAA CT ATCGTGCTAGA GGC AAAACATGA TGGTTT CTTC GTTT GGA TC AATCT AGT ACAT GT AATCT CCC TGATC TGT GCC ATT AAAT CTGTG CTGGAACTTTGTGTGGACGCACCAGACTACTGTTCAATTTGATGGCAAATCGACACACCAGCCAGCTCA ]
[+] EMBL C91765 [ TTCCCCAAATCAAAAACCCTCCCGTCCCATCCCCTCCTTGTGTAGTTGTGTTGTTTGCGGCGAAACCCTAGGATTGTCTCCGGCGGCGGCGGCGGAAGGATCATGGAGCGGGCGGCAGGCGGCGTGTCGTACCAGCGGTTCCCGCGGGTGCGGATCCGCGAGCTGAAGGACGACTACGCCAAGTTCGAGCTCCGCGACANCGACGCCAGCATGGNCAACGCCCTCCGNCGCGTCATGATCGNCGAGGTCCCCACCGTCGCCATCGACCTCGTCGAGATCGAGGTCAACTTCTCCGTCCTCAACGACGAGTTCATCGNCCACCGCCTTGGGCCTCATC ]
[+] EMBL AK068844 [ AACCCTCCCGTCCCATCCCCTCCTTGTGTAGTTGTGTTGTTTGCGGCGAAACCCTAGGATTGTCTCCGGCGGCGGCGGCGGAAGGATCATGGAGCGGGCGGCAGGCGGCGTGTCGTACCAGCGGTTCCCGCGGGTGCGGATCCGCGAGCTGAAGGACGACTACGCCAAGTTCGAGCTCCGCGACACCGACGCCAGCATGGCCAACGCCCTCCGCCGCGTCATGATCGCCGAGGTCCCCACCGTCGCCATCGACCTCGTCGAGATCGAGGTCAACTCCTCCGTCCTCAACGACGAGTTCATCGCCCACCGCC TCGGCCTCATCCCCCTCACCTCCGCCGCCGCCATGGCCATGCGCTTCTCCCGCGACTGCGACGCCTGCGACGGCGACGGCTCCTGCGAGTACTGCTCCGTCGAGTTCCACCTCGCCGCCCGCGCCACCGACTCCGACCAGACCCTCGAGGTCACCTCCAACGACCTCCGCTCCACCGACCCCAAGGTCTGCCCCGTCGACCAGGCTAGGGCCTACCAGCACGCCCTCGGCGGAACTGAACCCTTCGACACCGCCGCTGCTGCTGACCAGAGGGGCATACTAATTGTAAAGCTGCGTCGGGGCCAAGAGCTCAGGCTCCGAGCAATTGCTAGGAAGGGAATTGGCAAGGACCATGCCAAGTGGTCCCCCGCCGCTACTGTGACTTTCATGTATGAGCCTGAAATACGTATCAATGAAGAACTCATGGAAACATTGACACTCGAGGAAAAACGAAATTTGGTGGAGAGTAGCCCTACAAAAGTGTTCAACATTGATCCCAACACTCAACAGGTGGTAGTTGAGGATGCAGAGGCATATACATATGATGATGAGGTCATCAAGAAAGCAGATGCCATGGGAAAGCCCGGATTGATAGAGATCAATGCCAAGGAGGACAGCTTTATCTTCACTGTTGAAACAACTGGCGCTATCACAGCTTATGAGCTGATCATGAACGCTATCACGGTC TTGAGGCAAAAG TTAGATGCTGTTCGTCTACAAGATGACGATGCTGACCTTGGCG AGCTTGGTGCCCACCTTGTTGGAGGCT AAGCGCAGAGCTGC TTGTCTTGTG TTACCCACAAAG TAGGTTTCTCTAA CT ATCGTGCTAGA GGC AAAACATGA TGGTTT CTTC GTTT GGA TC AATCT AGT ACAT GT AATCT CCC TGATC TGT GCC ATT AAAT CTGTG CTGGAACTTTGTGTGGACGCACCAGACTACTGTTCAATTTGATGGCAAATCGACACACCAGCCAGCTCATCTCTGGGACAAATGTGGAGCTGCTAGTAATACTGAATGCTGTTCACCTGTGATGTGTCTTTGGGACTTGCAGCCCGTCGTTTTGATTGGCCTAC GGTATATGCTACGGCTTGCTGTGTTGAATGCTGGGTTTTGTGCAGGTCTCCCCAGATTCATATGCTCAATGCAATGTGGCGTTTAATGCTGTACATCTCCAGGTTAATTGCTGAATAGTGGTGGTACTAGATGGTTTGATGGATTCGCTGAGCGAGATGCGTGGAGTTAAGCGCGCGTGCATGTGGATCAGTACTACGATCTTGATGGATGTACCAAATGATTTGGTAATGTACTGATATTTTGGACCTAAATGTTGGATCTTTCC]
[+] EMBL AK061402 [ ACCCTCCCGTCCCATCCCCTCCTTGTGTAGTTGTGTTGTTTGCGGCGAAACCCTAGGATTGTCTCCGGCGGCGGCGGCGGAAGGATCATGGAGCGGGCGGCAGGCGGCGTGTCGTACCAGCGGTTCCCGCGGGTGCGGATCCGCGAGCTGAAGGACGACTACGCCAAGTTCGAGCTCCGCGACACCGACGCCAGCATGGCCAACGCCCTCCGCCGCGTCATGATCGCCGAGGTCCCCACCGTCGCCATCGACCTCGTCGAGATCGAGGTCAACTCCTCCGTCCTCAACGACGAGTTCATCGCCCACCGCC TCGGCCTCATCCCCCTCACCTCCGCCGCCGCCATGGCCATGCGCTTCTCCCGCGACTGCGACGCCTGCGACGGCGACGGCTCCTGCGAGTACTGCTCCGTCGAGTTCCACCTCGCCGCCCGCGCCACCGACTCCGACCAGACCCTCGAGGTCACCTCCAACGACCTCCGCTCCACCGACCCCAAGGTCTGCCCCGTCGACCAGGCTAGGGCCTACCAGCACGCCCTCGGCGGAACTGAACCCTTCGACACCGCCGCTGCTGCTGACCAGAGGGGCATACTAATTGTAAAGCTGCGTCGGGGCCAAGAGCTCAGGCTCCGAGCAATTGCTAGGAAGGGAATTGGCAAGGACCATGCCAAGTGGTCCCCCGCCGCTACTGTGACTTTCATGTATGAGCCTGAAATACGTATCAATGAAGAACTCATGGAAACATTGACACTCGAGGAAAAACGAAATTTGGTGGAGAGTAGCCCTACAAAAGTGTTCAACATTGATCCCAACACTCAACAGGTGGTAGTTGAGGATGCAGAGGCATATACATATGATGATGAGGTCATCAAGAAAGCAGATGCCATGGGAAAGCCCGGATTGATAGAGATCAATGCCAAGGAGGACAGCTTTATCTTCACTGTTGAAACAACTGGCGCTATCACAGCTTATGAGCTGATCATGAACGCTATCACGGTC TTGAGGCAAAAG TTAGATGCTGTTCGTCTACAAGATGACGATGCTGACCTTGGCG AGCTTGGTGCCCACCTTGTTGGAGGCT AAGCGCAGAGCTGC TTGTCTTGTG TTACCCACAAAG TAGGTTTCTCTAA CT ATCGTGCTAGA GGC AAAACATGA TGGTTT CTTC GTTT GGA TC AATCT AGT ACAT GT AATCT CCC TGATC TGT GCC ATT AAAT CTGTG CTGGAACTTTGTGTGGACGCACCAGACTACTGTTCAATTTGATGGCAAATCGACACACCAGCCAGCTCATCTCTGGGACAAATGTGGAGCTGCTAGTAATACTGAATGCTG ]
[+] EMBL AK120034 [ ACCCTCCCGTCCCATCCCCTCCTTGTGTAGTTGTGTTGTTTGCGGCGAAACCCTAGGATTGTCTCCGGCGGCGGCGGCGGAAGGATCATGGAGCGGGCGGCAGGCGGCGTGTCGTACCAGCGGTTCCCGCGGGTGCGGATCCGCGAGCTGAAGGACGACTACGCCAAGTTCGAGCTCCGCGACACCGACGCCAGCATGGCCAACGCCCTCCGCCGCGTCATGATCGCCGAGGTCCCCACCGTCGCCATCGACTTCGTCGAGATCGAGGTCAACTCCTCCGTCCTCAACGACGAGTTCATCGCCCACCGCC TCGGCCTCATCCCCCTCACCTCCGCCGCCGCCATGGCCATGCGCTTCTCCCGCGACTGCGACGCCTGCGACGGCGACGGCTCCTGCGAGTACTGCTCCGTCGAGTTCCACCTCGCCGCCCGCGCCACCGACTCCGACCAGACCCTCGAGGTCACCTCCAACGACCTCCGCTCCACCGACCCCAAGGTCTGCCCCGTCGACCAGGCTAGGGCCTACCAGCACGCCCTCGGCGGAACTGAACCCTTCGACACCGCCGCTGCTGCTGACCAGAGGGGCATACTAATTGTAAAGCTGCGTCGGGGCCAAGAGCTCAGGCTCCGAGCAATTGCTAGGAAGGGAATTGGCAAGGACCATGCCAAGTGGTCCCCCGCCGCTACTGTGACTTTCATGTATGAGCCTGAAATACGTATCAATGAAGAACTCATGGAAACATTGACACTCGAGGAAAAACGAAATTTGGTGGAGAGTAGCCCTACAAAAGTGTTCAACATTGATCCCAACACTCAACAGGTGGTAGTTGAGGATGCAGAGGCATATACATATGATGATGAGGTCATCAAGAAAGCAGATGCCATGGGAAAGCCCGGATTGATAGAGATCAATGCCAAGGAGGACAGCTTTATCTTCACTGTTGAAACAACTGGCGCTATCACAGCTTATGAGCTGATCATGAACGCTATCACGGTC TTGAGGCAAAAG TTAGATGCTGTTCGTCTACAAGATGACGATGCTGACCTTGGCG AGCTTGGTGCCCACCTTGTTGGAGGCT AAGCGCAGAGCTGC TTGTCTTGTG TTACCCACAAAG TAGGTTTCTCTAA CT ATCGTGCTAGA GGC AAAACATGA TGGTTT CTTC GTTT GGA TC AATCT AGT ACAT GT AATCT CCC TGATC TGT GCC ATT AAAT CTGTG CTGGAACTTTCTGTGGACGCACCAGACTACTGTTCAATTTGATGGCAAATCGACACACCAGCCAGCTCATCTCTGGGACAAATGTGGAGCTGCTAGTAATACTGAAc ]
[+] EMBL AK103978 [ TGTTGTTTGCGGCGAAACCCTAGGATTGTCTCCGGCGGCGGCGGCGGAAGGATCATGGAGCGGGCGGCAGGCGGCGTGTCGTACCAGCGGTTCCCGCGGGTGCGGATCCGCGAGCTGAAGGACGACTACGCCAAGTTCGAGCTCCGCGACACCGACGCCAGCATGGCCAACGCCCTCCGCCGCGTCATGATCGCCGAGGTCCCCACCGTCGCCATCGACCTCGTCGAGATCGAGGTCAACTCCTCCGTCCTCAACGACGAGTTCATCGCCCACCGCC TCGGCCCCATCCCCCTCACCTCCGCCGCCGCCATGGCCATGCGCTTCTCCCGCGACTGCGACGCCTGCGACGGCGACGGCTCCTGCGAGTACTGCTCCGTCGAGTTCCACCTCGCCGCCCGCGCCACCGACTCCGACCAGACCCTCGAGGTCACCTCCAACGACCTCCGCTCCACCGACCCCAAGGTCTGCCCCGTCGACCAGGCTAGGGCCTACCAGCACGCCCTCGGCGGAACTGAACCCTTCGACACCGCCGCTGCTGCTGACCAGAGGGGCATACTAATTGTAAAGCTGCGTCGGGGCCAAGAGCTCAGGCTCCGAGCAATTGCTAGGAAGGGAATTGGCAAGGACCATGCCAAGTGGTCCCCCGCCGCTACTGTGACTTTCATGTATGAGCCTGAAATACGTATCAATGAAGAACTCATGGAAACATTGACACTCGAGGAAAAACGAAATTTGGTGGAGAGTAGCCCTACAAAAGTGTTCAACATTGATCCCAACACTCAACAGGTGGTAGTTGAGGATGCAGAGGCATATACATATGATGATGAGGTCATCAAGAAAGCAGATGCCATGGGAAAGCCCGGATTGATAGAGATCAATGCCAAGGAGGACAGCTTTATCTTCACTGTTGAAACAACTGGCGCTATCACAGCTTATGAGCTGATCATGAACGCTATCACGGTC TTGAGGCAAAAG TTAGATGCTGTTCGTCTACAAGATGACGATGCTGACCTTGGCG AGCTTGGTGCCCACCTTGTTGGAGGCT AAGCGCAGAGCTGC TTGTCTTGTG TTACCCACAAAG TAGGTTTCTCTAA CT ATCGTGCTAGA GGC AAAACATGA TGGTTT CTTC GTTT GGA TC AATCT AGT ACAT GT AATCT CCC TGATC TGT GCC ATT AAAT CTGTG CTGGAACTTTGTGTGGACGCACCAGACTACTGTTCAATTTGATGGCAAATCGACACACCAGCCAGCTCATCTCTGGGACAAATGTGGAGCTGCTAGTAATACTG ]
[+] EMBL AU160827 [ GCTCCGTCGAGTTCCACCTCGCCGCCCGCGCCACCGACTCCGACCAGACCCTCGAGGTCACCTCCAACGACCTCCGCTCCACCGACCCCAAGGTCTGCCCCGTCGACCAGGCTAGGGCCTACCAGCACGCCCTCGGCGGAACTGAACCCTTCGACACCGCCGCTGCTGCTGACCAGAGGGGCATACTAATTGTAAAGCTGCGTCGGGGCCAAGAGCTCAGGCTCCGAGCAATTGCTAGGAAGGGAATTGGCAAGGACCATGCCAAGTGGTCCCCCGCCGCTACTGTGACTTTCATGTATGAGCCTGAAATACGTATCAATGAAGAACTCATGGAAACATTGACACTCGAGGAAAAACGAAATTTGGTGGAGAGTAGCCCTACAAAAGTGTTCAACATTGATCCCAACACTCAACAGGTGGTAGTTGAGGATGCAGAGGCATATACATATGATGATGAGGTCATCAAGAAAGCAGATGCCATGGGAAAGCCCGGATTGATAGAGATCAATGCCAAGGAGGACAGCTTTATCTTCACTGTTGAAACAACTGGCGCTATCACAGCTTATGAGCTGATCATGAACGCTATCACGGTC TTGAGGCAAAAGTTTAGATGCTGTTCGTCTACAAGATGACGATGCTGA CTTGGCGNAGCTTGGTGCCCAACTTGTTGGAAGCTAAAGCGCANAANTGCTTTGTCTTGTGTTTACCCACAAAGNAAGNTTTCTCTAANCTAATCGTGCTAGAAGGGCAAAAACATGATTGGTTTCCTTCGGTTTGGGATTCAAACCTAAGTAACATGGTNAATCTNCCCTTGANCTTGTGGCCAATTAAAATCCTGTGCCTGGgaa ]
[-] EMBL OSC655 [ TTATNA CTGATCATGAACGCTATCACGGTCTTTGAGGCAAAAG TTAGATGCTGTCCGTCTACAAGATGACGATGCTGACCTTGGCG AGCTTGGTGCCCACCTTGTTGGAGGCTAAAGCGCAGAGCTGC TTGTCTTGTG TTACCCACAAAG TAGGTTTCTCTAA CT ATCGTGCTAGA GGC AAAACATGA TGGTTT CTTC GTTT GGA TC AATCT AGT ACAT GT AATCT CCC TGATC TGT GCC ATT AAAT CTGTG CTGGAACTTTGTGTGGACGCACCAGACTACTGTTCAATTTGATGGCAAATCGACACACCAGCCAGCTCATCTCTGGGACAAATGTGGAGCTGCTAGTAATACTGAATGCTGTTCACCTGTGATGTGTCTTTGGGACTTGCAGCCCGTCGTTTTGATTGGCCTACNGGTANNANANA ]
[+] EMBL BQ907794 [ GTCTACAAGATGACGATGCTGACCTTGGCG AGCTTGGTGCCCACCTTGTTGGAGGCT AAGCGCAGAGCTGC TTGTCTTGTG TTACCCACAAAG TAGGTTTCTCTAA CT ATCGTGCTAGA GGC AAAACATGA TGGTTT CTTC GTTT GGA TC AATCT AGT ACAT GT AATCT CCC TGATC TGTGGCC ATT AAAT CTGTG CTGGAACTTTGTGTGGACGCACCAGACTACTGTTCAATTTGAT GC AATCGACACACCAGCCAGCTCATCTCTGGGACAAATGTGGAGCTGCTAGTAATACTGAATGCTGTTCACCTGTGATGTGTCTTTGGGACTTGCAGCCCGTCGTTTTGATT GCCTAC GGTAAAAaaa ]
consensusID : consensus_13851#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 712 fasta sequence
[GGGNAATTGGCAAGGNCCATGCCAANGTGGTCCCCCGCCGCTTACTGTGACTTTNCATGTATGAGCCCTGAAATACGTATCAATGAGGAACTCATGGAACCATTGACACTCGNGGAAAANCGAAATTTGGTGGAGAGTANCCCTACAAAAGTGTTCAACATTGATCCCAACACTCAACAGGTGGTAGTTGAGGATNCAGAGGCATATACATATGATGATGAGGTCATCAAGAAAGCAGATNCCATGGGAAAGCCCGGATTGATAGAGATCAATGCCAAGGAGGACAGCTTTATCTTCACTGTTGAAACAACTGGCGCTATCACAGCTTATGAGCTGATCATGAACGCTATCACGGTCTTGAGGCAAAAGTTAGATGCTGTTCGTCTACAAGATGACGATGCTGNCCTTGGCGAGCTTGGTGCCCNCCTTGTTGGAGGCTAAGCGCAGAGCTGCTTGTCTTGTGTTNCCCACAAAGTAGGTTTCTCTAACTATCGTGCTAGAGGCAAAACATGATGGTTTCTTCGTTTGGATCAATCTAGTACATGTAATCTCCCTGATCTGTGCCATTAAATCTGTGCTGGAACTTTGTGTGGACGCACCAGACTACTGTTCAATTTGATGGCAAATCGACACACCAGCCAGCTCATCTCTGGGACAAATGTGGAGCTGCTAGTAATACTGAATGCTGTTCAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU108696 [GGGNAATTGGCAAGGNCCATGCCAANGTGGTCCCCCGCCGCTTACTGTGACTTTNCATGTATGAGCCCTGAAATACGTATCAATGAGGAACTCATGGAACCATTGACACTCGNGGAAAANCGAAATTTGGTGGAGAGTANCCCTACAAAAGTGTTCAACATTGATCCCAACACTCAACAGGTGGTAGTTGAGGATNCAGAGGCATATACATATGATGATGAGGTCATCAAGAAAGCAGATNCCATGGGAAAGCCCGGATTGATAGAGATCAATGCCAAGGAGGACAGCTTTATCTTCACTGTTGAAACAACTGGCGCTATCACAGCTTATGAGCTGATCATGAACGCTATCACGGTCTTGAGGCAAAAGTTAGATGCTGTTCGTCTACAAGATGACGATGCTGNCCTTGGCGAGCTTGGTGCCCNCCTTGTTGGAGGCTAAGCGCAGAGCTGCTTGTCTTGTGTTNCCCACAAAGTAGGTTTCTCTAACTATCGTGCTAGAGGCAAAACATGATGGTTTCTTCGTTTGGATCAATCTAGTACATGTAATCTCCCTGATCTGTGCCATTAAATCTGTGCTGGAACTTTGTGTGGACGCACCAGACTACTGTTCAATTTGATGGCAAATCGACACACCAGCCAGCTCATCTCTGGGACAAATGTGGAGCTGCTAGTAATACTGAATGCTGTTCAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CB000078 [ TATGAG CCTGAAATACGTATCAATGAAGAACTCCTTGAAACATTGACACTCGAGGAAAAACGAAATTTGGTGGAGAGTAGCCCTACAAAAGTGTTCAACATTGATCCCAACACTCAACAGGTGGTAGTTGAGGATGCAGAGGCATATACATATGATGATGAGGTCATCAAGAAAGCAGATGCCATGGGAAAGCCCGGATTGATAGAGATCAATGCCAAGGAGGACAGCTTTATCTTCACTGTTGAAACAACTGGCGCTATCACAGCTTATGAGCTGATCATGAACGCTATCACGGTCTTGAGGCAAAAGTTAGATGCTGTTCGTCTACAAGATGACGATGCTGACCTTGGCGAGCTTGGTGCCCACCTTGTTGGAGGCTAAGCGCAGAGCTGCTTGTCTTGTGTTACCCACAAAGTAGGTTTCTCTAACTATCGTGCTAGAGGCAAAACATGATGGTTTCTTCGTTTGGATCAATCTAGTACATGTAATCTCCCTGATCTGTGCCATTAAATCTGTGCTGGAACTTTGTGTGGACGCACCAGACTACTGTTCAATTTGATGGCAAATCGACACACCAGCCAGCTCATCTCTGGGACAAATGTGGAGCTGCTAGTAATACTGAATGCTGTTCACCAAAAAAAAAA ]
consensusID : consensus_13851#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 695 fasta sequence
[AATTTTAAAGCTGCTTCGGGCCCAAGAGCTCAGGCTCCGAGCATTTGCTAGGAAGGGAATTGGCAAGGACCATGCCAAGTGNTCCCCCGCCGCTACTGTGACTTTCATGTATGANCCTGAAATACGTATCAATGAAGAACTCATGGAAACATTGACACTCGAGGAAAAACGAAATTTGGTGGAGAGTANCCCTACA-AAAGTGTTCAACATTGATCCCAACACTCAACAGGTGGTAGTTGAGGATGCAGAGGCATATACATATGATGATGAGGTCATCAAGAAAGCAGATGCCATGGGAAAGCCCGGATTGATAGAGATCAATGCCAAGGAGGACAGCTTTATCTTCACTGTTGAAACAACTGGCGCTATCACAGCTTATGAGCTGATCATGAACGCTATCACGGTCTTGAGGCAAAAGTTAGATGCTGTTCGTCTACAAGATGACGATGCTGACCTTGGCGAGCTTGGTGCCCA-CCTTGTTGGAGGCTAAGCGCAGAGCTGCTTGTCTTGTGTTACCCACA-AAGTAGGTTTCTCTAACTATCGTGCTAGAGGCAAAACATGATGGTTTCTTCGTTTGGATCAATCTAGTACATGTAATCTCCCTGATCTGTGCCATTAAATCTGTGCTGGAACTTTGTGTGGACGCACCAGACTACTGTTCAATTTGATGGCAAATCGACACAAAAAAAAAAAAA]
[+] EMBL AU101433 [AATTTTAAAGCTGCTTCGGGCCCAAGAGCTCAGGCTCCGAGCATTTGCTAGGAAGGGAATTGGCAAGGACCATGCCAAGTGNTCCCCCGCCGCTACTGTGACTTTCATGTATGANCCTGAAATACGTATCAATGAAGAACTCATGGAAACATTGACACTCGAGGAAAAACGAAATTTGGTGGAGAGTANCCCTACA AAAGTGTTCAACATTGATCCCAACACTCAACAGGTGGTAGTTGAGGATGCAGAGGCATATACATATGATGATGAGGTCATCAAGAAAGCAGATGCCATGGGAAAGCCCGGATTGATAGAGATCAATGCCAAGGAGGACAGCTTTATCTTCACTGTTGAAACAACTGGCGCTATCACAGCTTATGAGCTGATCATGAACGCTATCACGGTCTTGAGGCAAAAGTTAGATGCTGTTCGTCTACAAGATGACGATGCTGACCTTGGCGAGCTTGGTGCCCA CCTTGTTGGAGGCTAAGCGCAGAGCTGCTTGTCTTGTGTTACCCACA AAGTAGGTTTCTCTAACTATCGTGCTAGAGGCAAAACATGATGGTTTCTTCGTTTGGATCAATCTAGTACATGTAATCTCCCTGATCTGTGCCATTAAATCTGTGCTGGAACTTTGTGTGGACGCACCAGACTACTGTTCAATTTGATGGCAAATCGACACAAAAAAAAAAAAA]
[+] EMBL BI809980 [ AGAGTAGCCCTACAGAAAGTGTTCAACATTGATCCCAACACTCAACAGGTGTT TTGAGGAT CAGAGGCATATACATATGATGATGAGGTCATCAAGAAA CAGAT CCATGGGAAAGCCCGGATTGATAGAGATCAATGCCAAGGAGGACAGCTTTATCTTCACTGTTGAAACAACTGGCGCTATCACAGCTTATGAGCTGATCATGAACGCTATCACGGTCTTGAGGCAGAAGTTAGATGCTGTTCGTCTACAAGATGACGATGCTGACCTTGGCGAGCTTGGTGCCCACCCTTGTTGGAGGCTAAGCGCAGAGCTGCTTGTCTTGTGTTACCCACACAAGTAGGTTTCTCTAACTATCGTGCTAGAGGC AAACATGATGGTTTCTTCGTTTGGATCAATCTAGTACATGTAATCTCCCTGATCTGTGCCATTAAATCTGTGCTGGAACTTTGTGTGGACGCACCAGACTACTGTTCAATTTGATGGC AATCGACACAAAAAAAAAA ]
consensusID : consensus_13851#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 205 fasta sequence
[GCGGACGNTGGACTNCCCGTCCCATCCCCTCCTTGTGTAGTTGTGTTGTTTGCGGCGAAACCCTAGGATTGTCTCCGGCGGCGGCGGCGGAAGGATCATGGAGCGGGCGGCAGGCGGCGTGTCGTACCAGCGGTTCCCGCGGGTGCGGATCCGCGAGCTGAAGGACGACTACGCCAAGTTCGAGCTCCGCGACACCGACGCCAGC]
[-] EMBL AU197304 [GCGGACGNTGGACTNCCCGTCCCATCCCCTCCTTGTGTAGTTGTGTTGTTTGCGGCGAAACCCTAGGATTGTCTCCGGCGGCGGCGGCGGAAGGATCATGGAGCGGGCGGCAGGCGGCGTGTCGTACCAGCGGTTCCCGCGGGTGCGGATCCGCGAGCTGAAGGACGACTACGCCAAGTTCGAGCTCCGCGACACCGACGCCAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13851#1 ------------------------------------------------------------
consensus_13851#2 ------------------------------------------------------------
consensus_13851#0 CTATAGTGTTGGGTTTGGGTGTTGGTTTTTCCCCAAATCAAAAACCCTCCCGTCCCATCC 60
consensus_13851#3 ------------------------------------------------------------
consensus_13851#1 ------------------------------------------------------------
consensus_13851#2 ------------------------------------------------------------
consensus_13851#0 CCTCCTTGTGTAGTTGTGTTGTTTGCGGCGAAACCCTAGGATTGTCTCCGGCGGCGGCGG 120
consensus_13851#3 ------------------------------------------------------------
consensus_13851#1 ------------------------------------------------------------
consensus_13851#2 ------------------------------------------------------------
consensus_13851#0 CGGAAGGATCATGGAGCGGGCGGCAGGCGGCGTGTCGTACCAGCGGTTCCCGCGGGTGCG 180
consensus_13851#3 ------------------------------------------------------------
consensus_13851#1 ------------------------------------------------------------
consensus_13851#2 ------------------------------------------------------------
consensus_13851#0 GATCCGCGAGCTGAAGGACGACTACGCCAAGTTCGAGCTCCGCGACACCGACGCCAGCAT 240
consensus_13851#3 ------------------------------------------------------------
consensus_13851#1 ------------------------------------------------------------
consensus_13851#2 ------------------------------------------------------------
consensus_13851#0 GGCCAACGCCCTCCGCCGCGTCATGATCGCCGAGGTCCCCACCGTCGCCATCGACCTCGT 300
consensus_13851#3 ------------------------------------------------------------
consensus_13851#1 ------------------------------------------------------------
consensus_13851#2 ------------------------------------------------------------
consensus_13851#0 CGAGATCGAGGTCAACTCCTCCGTCCTCAACGACGAGTTCATCGCCCACCGCCTCGGCCT 360
consensus_13851#3 ------------------------------------------------------------
consensus_13851#1 ------------------------------------------------------------
consensus_13851#2 ------------------------------------------------------------
consensus_13851#0 CATCCCCCTCACCTCCGCCGCCGCCATGGCCATGCGCTTCTCCCGCGACTGCGACGCCTG 420
consensus_13851#3 ------------------------------------------------------------
consensus_13851#1 ------------------------------------------------------------
consensus_13851#2 ------------------------------------------------------------
consensus_13851#0 CGACGGCGACGGCTCCTGCGAGTACTGCTCCGTCGAGTTCCACCTCGCCGCCCGCGCCAC 480
consensus_13851#3 ------------------------------------------------------------
consensus_13851#1 ------------------------------------------------------------
consensus_13851#2 ------------------------------------------------------------
consensus_13851#0 CGACTCCGACCAGACCCTCGAGGTCACCTCCAACGACCTCCGCTCCACCGACCCCAAGGT 540
consensus_13851#3 ------------------------------------------------------------
consensus_13851#1 ------------------------------------------------------------
consensus_13851#2 ------------------------------------------------------------
consensus_13851#0 CTGCCCCGTCGACCAGGCTAGGGCCTACCAGCACGCCCTCGGCGGAACTGAACCCTTCGA 600
consensus_13851#3 ------------------------------------------------------------
consensus_13851#1 ------------------------------------------------------------
consensus_13851#2 ---------------------------------AATTTTAAAGCTGCTTCGGGCCCAAGA 27
consensus_13851#0 CACCGCCGCTGCTGCTGACCAGAGGGGCATACTAATTGTAAAGCTGCGTCGGGGCCAAGA 660
consensus_13851#3 ------------------------------------------------------------
consensus_13851#1 --------------------------GGGNAATTGGCAAGGNCCATGCCAANGTGGTCCC 34
consensus_13851#2 GCTCAGGCTCCGAGCATTTGCTAGGAAGGGAATTGGCAAGGACCATGCCAAG-TGNTCCC 86
consensus_13851#0 GCTCAGGCTCCGAGCAATTGCTAGGAAGGGAATTGGCAAGGACCATGCCAAG-TGGTCCC 719
consensus_13851#3 ------------------------------------------------------------
consensus_13851#1 CCGCCGCTTACTGTGACTTTNCATGTATGAGCCCTGAAATACGTATCAATGAGGAACTCA 94
consensus_13851#2 CCGCCGCT-ACTGTGACTTTC-ATGTATGANCC-TGAAATACGTATCAATGAAGAACTCA 143
consensus_13851#0 CCGCCGCT-ACTGTGACTTTC-ATGTATGAGCC-TGAAATACGTATCAATGAAGAACTCA 776
consensus_13851#3 --------------------------------------------GCGGACGNTGGACTNC 16
* * * ***
consensus_13851#1 TGGAACCATTGACACTCGNGGAAAANCGAAATTTGGTGGAGAGTANCCCTACAAAAGTGT 154
consensus_13851#2 TGGAAACATTGACACTCGAGGAAAAACGAAATTTGGTGGAGAGTANCCCTACAAAAGTGT 203
consensus_13851#0 TGGAAACATTGACACTCGAGGAAAAACGAAATTTGGTGGAGAGTAGCCCTACAAAAGTGT 836
consensus_13851#3 CCGTCCCATC--CCCTCCTTGTGTAGTTGTGTTGTTTGCGGCGAAACCCTAGGATTGTCT 74
* *** * *** * * ** ** * * * ***** * ** *
consensus_13851#1 TCAACATTGATCCCAACACTCAACAGGTGGTAGTTGAGGATNCAGA-GGCATATACATAT 213
consensus_13851#2 TCAACATTGATCCCAACACTCAACAGGTGGTAGTTGAGGATGCAGA-GGCATATACATAT 262
consensus_13851#0 TCAACATTGATCCCAACACTCAACAGGTGGTAGTTGAGGATGCAGA-GGCATATACATAT 895
consensus_13851#3 CCGGCG------GCGGCGGCGGAAGGATCATGGAGCGGGCGGCAGGCGGCGTGT-CGTAC 127
* * * * * * * * * ** *** *** * * * **
consensus_13851#1 GATGATGAGGTCATCAAGAAAGCAGATNC-CATGGGAAAGCCCGGATTGATAGAGATCAA 272
consensus_13851#2 GATGATGAGGTCATCAAGAAAGCAGATGC-CATGGGAAAGCCCGGATTGATAGAGATCAA 321
consensus_13851#0 GATGATGAGGTCATCAAGAAAGCAGATGC-CATGGGAAAGCCCGGATTGATAGAGATCAA 954
consensus_13851#3 CA----GCGGTTCCCGCGGGTGCGGATCCGCGAGCTGAAGGACGACTACGCCAAGTTCGA 183
* * *** * * ** *** * * * *** ** * ** ** *
consensus_13851#1 TGCCAAGGAGGACAGCTTTATCTTCACTGTTGAAACAACTGGCGCTATCACAGCTTATGA 332
consensus_13851#2 TGCCAAGGAGGACAGCTTTATCTTCACTGTTGAAACAACTGGCGCTATCACAGCTTATGA 381
consensus_13851#0 TGCCAAGGAGGACAGCTTTATCTTCACTGTTGAAACAACTGGCGCTATCACAGCTTATGA 1014
consensus_13851#3 GCTCCGCGACACCGACGCCAGC-------------------------------------- 205
* ** * * * *
consensus_13851#1 GCTGATCATGAACGCTATCACGGTCTTGAGGCAAAAGTTAGATGCTGTTCGTCTACAAGA 392
consensus_13851#2 GCTGATCATGAACGCTATCACGGTCTTGAGGCAAAAGTTAGATGCTGTTCGTCTACAAGA 441
consensus_13851#0 GCTGATCATGAACGCTATCACGGTCTTGAGGCAAAAGTTAGATGCTGTTCGTCTACAAGA 1074
consensus_13851#3 ------------------------------------------------------------
consensus_13851#1 TGACGATGCTGNCCTTGGCGAGCTTGGTGCCCNCCTTGTTGGAGGCTAAGCGCAGAGCTG 452
consensus_13851#2 TGACGATGCTGACCTTGGCGAGCTTGGTGCCCACCTTGTTGGAGGCTAAGCGCAGAGCTG 501
consensus_13851#0 TGACGATGCTGACCTTGGCGAGCTTGGTGCCCACCTTGTTGGAGGCTAAGCGCAGAGCTG 1134
consensus_13851#3 ------------------------------------------------------------
consensus_13851#1 CTTGTCTTGTGTTNCCCACAAAGTAGGTTTCTCTAACTATCGTGCTAGAGGCAAAACATG 512
consensus_13851#2 CTTGTCTTGTGTTACCCACAAAGTAGGTTTCTCTAACTATCGTGCTAGAGGCAAAACATG 561
consensus_13851#0 CTTGTCTTGTGTTACCCACAAAGTAGGTTTCTCTAACTATCGTGCTAGAGGCAAAACATG 1194
consensus_13851#3 ------------------------------------------------------------
consensus_13851#1 ATGGTTTCTTCGTTTGGATCAATCTAGTACATGTAATCTCCCTGATCTGTGCCATTAAAT 572
consensus_13851#2 ATGGTTTCTTCGTTTGGATCAATCTAGTACATGTAATCTCCCTGATCTGTGCCATTAAAT 621
consensus_13851#0 ATGGTTTCTTCGTTTGGATCAATCTAGTACATGTAATCTCCCTGATCTGTGCCATTAAAT 1254
consensus_13851#3 ------------------------------------------------------------
consensus_13851#1 CTGTGCTGGAACTTTGTGTGGACGCACCAGACTACTGTTCAATTTGATGGCAAATCGACA 632
consensus_13851#2 CTGTGCTGGAACTTTGTGTGGACGCACCAGACTACTGTTCAATTTGATGGCAAATCGACA 681
consensus_13851#0 CTGTGCTGGAACTTTGTGTGGACGCACCAGACTACTGTTCAATTTGATGGCAAATCGACA 1314
consensus_13851#3 ------------------------------------------------------------
consensus_13851#1 CACCAGCCAGCTCATCTCTGGGACAAATGTGGAGCTGCTAGTAATACTGAATGCTGTTCA 692
consensus_13851#2 CAAAAAAAAAAAAA---------------------------------------------- 695
consensus_13851#0 CACCAGCCAGCTCATCTCTGGGACAAATGTGGAGCTGCTAGTAATACTGAATGCTGTTCA 1374
consensus_13851#3 ------------------------------------------------------------
consensus_13851#1 AAAAAAAAAAAAAAAAAAAA---------------------------------------- 712
consensus_13851#2 ------------------------------------------------------------
consensus_13851#0 CCTGTGATGTGTCTTTGGGACTTGCAGCCCGTCGTTTTGATTGGCCTACGGTANAAGANA 1434
consensus_13851#3 ------------------------------------------------------------
consensus_13851#1 ------------------------------------------------------------
consensus_13851#2 ------------------------------------------------------------
consensus_13851#0 CGGCTTGCTGTGTTGAATGCTGGGTTTTGTGCAGGTCTCCCCAGATTCATATGCTCAATG 1494
consensus_13851#3 ------------------------------------------------------------
consensus_13851#1 ------------------------------------------------------------
consensus_13851#2 ------------------------------------------------------------
consensus_13851#0 CAATGTGGCGTTTAATGCTGTACATCTCCAGGTTAATTGCTGAATAGTGGTGGTACTAGA 1554
consensus_13851#3 ------------------------------------------------------------
consensus_13851#1 ------------------------------------------------------------
consensus_13851#2 ------------------------------------------------------------
consensus_13851#0 TGGTTTGATGGATTCGCTGAGCGAGATGCGTGGAGTTAAGCGCGCGTGCATGTGGATCAG 1614
consensus_13851#3 ------------------------------------------------------------
consensus_13851#1 ------------------------------------------------------------
consensus_13851#2 ------------------------------------------------------------
consensus_13851#0 TACTACGATCTTGATGGATGTACCAAATGATTTGGTAATGTACTGATATTTTGGACCTAA 1674
consensus_13851#3 ------------------------------------------------------------
consensus_13851#1 ---------------
consensus_13851#2 ---------------
consensus_13851#0 ATGTTGGATCTTTCC 1689
consensus_13851#3 ---------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||