These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13851#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1689 fasta sequence [CTATAGTGTTGGGTTTGGGTGTTGGTTTTTCCCCAAATCAAAAACCCTCCCGTCCCATCCCCTCCTTGTGTAGTTGTGTTGTTTGCGGCGAAACCCTAGGATTGTCTCCGGCGGCGGCGGCGGAAGGATCATGGAGCGGGCGGCAGGCGGCGTGTCGTACCAGCGGTTCCCGCGGGTGCGGATCCGCGAGCTGAAGGACGACTACGCCAAGTTCGAGCTCCGCGACACCGACGCCAGCATGGCCAACGCCCTCCGCCGCGTCATGATCGCCGAGGTCCCCACCGTCGCCATCGACCTCGTCGAGATCGAGGTCAACTCCTCCGTCCTCAACGACGAGTTCATCGCCCACCGCC-TCGGCCTCATCCCCCTCACCTCCGCCGCCGCCATGGCCATGCGCTTCTCCCGCGACTGCGACGCCTGCGACGGCGACGGCTCCTGCGAGTACTGCTCCGTCGAGTTCCACCTCGCCGCCCGCGCCACCGACTCCGACCAGACCCTCGAGGTCACCTCCAACGACCTCCGCTCCACCGACCCCAAGGTCTGCCCCGTCGACCAGGCTAGGGCCTACCAGCACGCCCTCGGCGGAACTGAACCCTTCGACACCGCCGCTGCTGCTGACCAGAGGGGCATACTAATTGTAAAGCTGCGTCGGGGCCAAGAGCTCAGGCTCCGAGCAATTGCTAGGAAGGGAATTGGCAAGGACCATGCCAAGTGGTCCCCCGCCGCTACTGTGACTTTCATGTATGAGCCTGAAATACGTATCAATGAAGAACTCATGGAAACATTGACACTCGAGGAAAAACGAAATTTGGTGGAGAGTAGCCCTACAAAAGTGTTCAACATTGATCCCAACACTCAACAGGTGGTAGTTGAGGATGCAGAGGCATATACATATGATGATGAGGTCATCAAGAAAGCAGATGCCATGGGAAAGCCCGGATTGATAGAGATCAATGCCAAGGAGGACAGCTTTATCTTCACTGTTGAAACAACTGGCGCTATCACAGCTTATGAGCTGATCATGAACGCTATCACGGTC-TTGAGGCAAAAG-TTAGATGCTGTTCGTCTACAAGATGACGATGCTGACCTTGGCG-AGCTTGGTGCCCACCTTGTTGGAGGCT-AAGCGCAGAGCTGC-TTGTCTTGTG-TTACCCACAAAG-TAGGTTTCTCTAA-CT-ATCGTGCTAGA--GGC-AAAACATGA-TGGTTT-CTTC-GTTT-GGA-TC-AATCT-AGT-ACAT-GT-AATCT-CCC-TGATC-TGT-GCC-ATT-AAAT-CTGTG-CTGGAACTTTGTGTGGACGCACCAGACTACTGTTCAATTTGATGGCAAATCGACACACCAGCCAGCTCATCTCTGGGACAAATGTGGAGCTGCTAGTAATACTGAATGCTGTTCACCTGTGATGTGTCTTTGGGACTTGCAGCCCGTCGTTTTGATTGGCCTAC-GGTANAAGANACGGCTTGCTGTGTTGAATGCTGGGTTTTGTGCAGGTCTCCCCAGATTCATATGCTCAATGCAATGTGGCGTTTAATGCTGTACATCTCCAGGTTAATTGCTGAATAGTGGTGGTACTAGATGGTTTGATGGATTCGCTGAGCGAGATGCGTGGAGTTAAGCGCGCGTGCATGTGGATCAGTACTACGATCTTGATGGATGTACCAAATGATTTGGTAATGTACTGATATTTTGGACCTAAATGTTGGATCTTTCC] [+] EMBL AK121793 [CTATAGTGTTGGGTTTGGGTGTTGGTTTTTCCCCAAATCAAAAACCCTCCCGTCCCATCCCCTCCTTGTGTAGTTGTGTTGTTTGCGGCGAAACCCTAGGATTGTCTCCGGCGGCGGCGGCGGAAGGATCATGGAGCGGGCGGCAGGCGGCGTGTCGTACCAGCGGTTCCCGCGGGTGCGGATCCGCGAGCTGAAGGACGACTACGCCAAGTTCGAGCTCCGCGACACCGACGCCAGCATGGCCAACGCCCTCCGCCGCGTCATGATCGCCGAGGTCCCCACCGTCGCCATCGACCTCGTCGAGATCGAGGTCAACTCCTCCGTCCTCAACGACGAGTTCATCGCCCACCGCC TCGGCCTCATCCCCCTCACCTCCGCCGCCGCCATGGCCATGCGCTTCTCCCGCGACTGCGACGCCTGCGACGGCGACGGCTCCTGCGAGTACTGCTCCGTCGAGTTCCACCTCGCCGCCCGCGCCACCGACTCCGACCAGACCCTCGAGGTCACCTCCAACGACCTCCGCTCCACCGACCCCAAGGTCTGCCCCGTCGACCAGGCTAGGGCCTACCAGCACGCCCTCGGCGGAACTGAACCCTTCGACACCGCCGCTGCTGCTGACCAGAGGGGCATACTAATTGTAAAGCTGCGTCGGGGCCAAGAGCTCAGGCTCCGAGCAATTGCTAGGAAGGGAATTGGCAAGGACCATGCCAAGTGGTCCCCCGCCGCTACTGTGACTTTCATGTATGAGCCTGAAATACGTATCAATGAAGAACTCATGGAAACATTGACACTCGAGGAAAAACGAAATTTGGTGGAGAGTAGCCCTACAAAAGTGTTCAACATTGATCCCAACACTCAACAGGTGGTAGTTGAGGATGCAGAGGCATATACATATGATGATGAGGTCATCAAGAAAGCAGATGCCATGGGAAAGCCCGGATTGATAGAGATCAATGCCAAGGAGGACAGCTTTATCTTCACTGTTGAAACAACTGGCGCTATCACAGCTTATGAGCTGATCATGAACGCTATCACGGTC TTGAGGCAAAAG TTAGATGCTGTTCGTCTACAAGATGACGATGCTGACCTTGGCG AGCTTGGTGCCCACCTTGTTGGAGGCT AAGCGCAGAGCTGC TTGTCTTGTG TTACCCACAAAG TAGGTTTCTCTAA CT ATCGTGCTAGA GGC AAAACATGA TGGTTT CTTC GTTT GGA TC AATCT AGT ACAT GT AATCT CCC TGATC TGT GCC ATT AAAT CTGTG CTGGAACTTTGTGTGGACGCACCAGACTACTGTTCAATTTGATGGCAAATCGACACACCAGCCAGCTCA ] [+] EMBL C91765 [ TTCCCCAAATCAAAAACCCTCCCGTCCCATCCCCTCCTTGTGTAGTTGTGTTGTTTGCGGCGAAACCCTAGGATTGTCTCCGGCGGCGGCGGCGGAAGGATCATGGAGCGGGCGGCAGGCGGCGTGTCGTACCAGCGGTTCCCGCGGGTGCGGATCCGCGAGCTGAAGGACGACTACGCCAAGTTCGAGCTCCGCGACANCGACGCCAGCATGGNCAACGCCCTCCGNCGCGTCATGATCGNCGAGGTCCCCACCGTCGCCATCGACCTCGTCGAGATCGAGGTCAACTTCTCCGTCCTCAACGACGAGTTCATCGNCCACCGCCTTGGGCCTCATC ] [+] EMBL AK068844 [ AACCCTCCCGTCCCATCCCCTCCTTGTGTAGTTGTGTTGTTTGCGGCGAAACCCTAGGATTGTCTCCGGCGGCGGCGGCGGAAGGATCATGGAGCGGGCGGCAGGCGGCGTGTCGTACCAGCGGTTCCCGCGGGTGCGGATCCGCGAGCTGAAGGACGACTACGCCAAGTTCGAGCTCCGCGACACCGACGCCAGCATGGCCAACGCCCTCCGCCGCGTCATGATCGCCGAGGTCCCCACCGTCGCCATCGACCTCGTCGAGATCGAGGTCAACTCCTCCGTCCTCAACGACGAGTTCATCGCCCACCGCC TCGGCCTCATCCCCCTCACCTCCGCCGCCGCCATGGCCATGCGCTTCTCCCGCGACTGCGACGCCTGCGACGGCGACGGCTCCTGCGAGTACTGCTCCGTCGAGTTCCACCTCGCCGCCCGCGCCACCGACTCCGACCAGACCCTCGAGGTCACCTCCAACGACCTCCGCTCCACCGACCCCAAGGTCTGCCCCGTCGACCAGGCTAGGGCCTACCAGCACGCCCTCGGCGGAACTGAACCCTTCGACACCGCCGCTGCTGCTGACCAGAGGGGCATACTAATTGTAAAGCTGCGTCGGGGCCAAGAGCTCAGGCTCCGAGCAATTGCTAGGAAGGGAATTGGCAAGGACCATGCCAAGTGGTCCCCCGCCGCTACTGTGACTTTCATGTATGAGCCTGAAATACGTATCAATGAAGAACTCATGGAAACATTGACACTCGAGGAAAAACGAAATTTGGTGGAGAGTAGCCCTACAAAAGTGTTCAACATTGATCCCAACACTCAACAGGTGGTAGTTGAGGATGCAGAGGCATATACATATGATGATGAGGTCATCAAGAAAGCAGATGCCATGGGAAAGCCCGGATTGATAGAGATCAATGCCAAGGAGGACAGCTTTATCTTCACTGTTGAAACAACTGGCGCTATCACAGCTTATGAGCTGATCATGAACGCTATCACGGTC TTGAGGCAAAAG TTAGATGCTGTTCGTCTACAAGATGACGATGCTGACCTTGGCG AGCTTGGTGCCCACCTTGTTGGAGGCT AAGCGCAGAGCTGC TTGTCTTGTG TTACCCACAAAG TAGGTTTCTCTAA CT ATCGTGCTAGA GGC AAAACATGA TGGTTT CTTC GTTT GGA TC AATCT AGT ACAT GT AATCT CCC TGATC TGT GCC ATT AAAT CTGTG CTGGAACTTTGTGTGGACGCACCAGACTACTGTTCAATTTGATGGCAAATCGACACACCAGCCAGCTCATCTCTGGGACAAATGTGGAGCTGCTAGTAATACTGAATGCTGTTCACCTGTGATGTGTCTTTGGGACTTGCAGCCCGTCGTTTTGATTGGCCTAC GGTATATGCTACGGCTTGCTGTGTTGAATGCTGGGTTTTGTGCAGGTCTCCCCAGATTCATATGCTCAATGCAATGTGGCGTTTAATGCTGTACATCTCCAGGTTAATTGCTGAATAGTGGTGGTACTAGATGGTTTGATGGATTCGCTGAGCGAGATGCGTGGAGTTAAGCGCGCGTGCATGTGGATCAGTACTACGATCTTGATGGATGTACCAAATGATTTGGTAATGTACTGATATTTTGGACCTAAATGTTGGATCTTTCC] [+] EMBL AK061402 [ ACCCTCCCGTCCCATCCCCTCCTTGTGTAGTTGTGTTGTTTGCGGCGAAACCCTAGGATTGTCTCCGGCGGCGGCGGCGGAAGGATCATGGAGCGGGCGGCAGGCGGCGTGTCGTACCAGCGGTTCCCGCGGGTGCGGATCCGCGAGCTGAAGGACGACTACGCCAAGTTCGAGCTCCGCGACACCGACGCCAGCATGGCCAACGCCCTCCGCCGCGTCATGATCGCCGAGGTCCCCACCGTCGCCATCGACCTCGTCGAGATCGAGGTCAACTCCTCCGTCCTCAACGACGAGTTCATCGCCCACCGCC TCGGCCTCATCCCCCTCACCTCCGCCGCCGCCATGGCCATGCGCTTCTCCCGCGACTGCGACGCCTGCGACGGCGACGGCTCCTGCGAGTACTGCTCCGTCGAGTTCCACCTCGCCGCCCGCGCCACCGACTCCGACCAGACCCTCGAGGTCACCTCCAACGACCTCCGCTCCACCGACCCCAAGGTCTGCCCCGTCGACCAGGCTAGGGCCTACCAGCACGCCCTCGGCGGAACTGAACCCTTCGACACCGCCGCTGCTGCTGACCAGAGGGGCATACTAATTGTAAAGCTGCGTCGGGGCCAAGAGCTCAGGCTCCGAGCAATTGCTAGGAAGGGAATTGGCAAGGACCATGCCAAGTGGTCCCCCGCCGCTACTGTGACTTTCATGTATGAGCCTGAAATACGTATCAATGAAGAACTCATGGAAACATTGACACTCGAGGAAAAACGAAATTTGGTGGAGAGTAGCCCTACAAAAGTGTTCAACATTGATCCCAACACTCAACAGGTGGTAGTTGAGGATGCAGAGGCATATACATATGATGATGAGGTCATCAAGAAAGCAGATGCCATGGGAAAGCCCGGATTGATAGAGATCAATGCCAAGGAGGACAGCTTTATCTTCACTGTTGAAACAACTGGCGCTATCACAGCTTATGAGCTGATCATGAACGCTATCACGGTC TTGAGGCAAAAG TTAGATGCTGTTCGTCTACAAGATGACGATGCTGACCTTGGCG AGCTTGGTGCCCACCTTGTTGGAGGCT AAGCGCAGAGCTGC TTGTCTTGTG TTACCCACAAAG TAGGTTTCTCTAA CT ATCGTGCTAGA GGC AAAACATGA TGGTTT CTTC GTTT GGA TC AATCT AGT ACAT GT AATCT CCC TGATC TGT GCC ATT AAAT CTGTG CTGGAACTTTGTGTGGACGCACCAGACTACTGTTCAATTTGATGGCAAATCGACACACCAGCCAGCTCATCTCTGGGACAAATGTGGAGCTGCTAGTAATACTGAATGCTG ] [+] EMBL AK120034 [ ACCCTCCCGTCCCATCCCCTCCTTGTGTAGTTGTGTTGTTTGCGGCGAAACCCTAGGATTGTCTCCGGCGGCGGCGGCGGAAGGATCATGGAGCGGGCGGCAGGCGGCGTGTCGTACCAGCGGTTCCCGCGGGTGCGGATCCGCGAGCTGAAGGACGACTACGCCAAGTTCGAGCTCCGCGACACCGACGCCAGCATGGCCAACGCCCTCCGCCGCGTCATGATCGCCGAGGTCCCCACCGTCGCCATCGACTTCGTCGAGATCGAGGTCAACTCCTCCGTCCTCAACGACGAGTTCATCGCCCACCGCC TCGGCCTCATCCCCCTCACCTCCGCCGCCGCCATGGCCATGCGCTTCTCCCGCGACTGCGACGCCTGCGACGGCGACGGCTCCTGCGAGTACTGCTCCGTCGAGTTCCACCTCGCCGCCCGCGCCACCGACTCCGACCAGACCCTCGAGGTCACCTCCAACGACCTCCGCTCCACCGACCCCAAGGTCTGCCCCGTCGACCAGGCTAGGGCCTACCAGCACGCCCTCGGCGGAACTGAACCCTTCGACACCGCCGCTGCTGCTGACCAGAGGGGCATACTAATTGTAAAGCTGCGTCGGGGCCAAGAGCTCAGGCTCCGAGCAATTGCTAGGAAGGGAATTGGCAAGGACCATGCCAAGTGGTCCCCCGCCGCTACTGTGACTTTCATGTATGAGCCTGAAATACGTATCAATGAAGAACTCATGGAAACATTGACACTCGAGGAAAAACGAAATTTGGTGGAGAGTAGCCCTACAAAAGTGTTCAACATTGATCCCAACACTCAACAGGTGGTAGTTGAGGATGCAGAGGCATATACATATGATGATGAGGTCATCAAGAAAGCAGATGCCATGGGAAAGCCCGGATTGATAGAGATCAATGCCAAGGAGGACAGCTTTATCTTCACTGTTGAAACAACTGGCGCTATCACAGCTTATGAGCTGATCATGAACGCTATCACGGTC TTGAGGCAAAAG TTAGATGCTGTTCGTCTACAAGATGACGATGCTGACCTTGGCG AGCTTGGTGCCCACCTTGTTGGAGGCT AAGCGCAGAGCTGC TTGTCTTGTG TTACCCACAAAG TAGGTTTCTCTAA CT ATCGTGCTAGA GGC AAAACATGA TGGTTT CTTC GTTT GGA TC AATCT AGT ACAT GT AATCT CCC TGATC TGT GCC ATT AAAT CTGTG CTGGAACTTTCTGTGGACGCACCAGACTACTGTTCAATTTGATGGCAAATCGACACACCAGCCAGCTCATCTCTGGGACAAATGTGGAGCTGCTAGTAATACTGAAc ] [+] EMBL AK103978 [ TGTTGTTTGCGGCGAAACCCTAGGATTGTCTCCGGCGGCGGCGGCGGAAGGATCATGGAGCGGGCGGCAGGCGGCGTGTCGTACCAGCGGTTCCCGCGGGTGCGGATCCGCGAGCTGAAGGACGACTACGCCAAGTTCGAGCTCCGCGACACCGACGCCAGCATGGCCAACGCCCTCCGCCGCGTCATGATCGCCGAGGTCCCCACCGTCGCCATCGACCTCGTCGAGATCGAGGTCAACTCCTCCGTCCTCAACGACGAGTTCATCGCCCACCGCC TCGGCCCCATCCCCCTCACCTCCGCCGCCGCCATGGCCATGCGCTTCTCCCGCGACTGCGACGCCTGCGACGGCGACGGCTCCTGCGAGTACTGCTCCGTCGAGTTCCACCTCGCCGCCCGCGCCACCGACTCCGACCAGACCCTCGAGGTCACCTCCAACGACCTCCGCTCCACCGACCCCAAGGTCTGCCCCGTCGACCAGGCTAGGGCCTACCAGCACGCCCTCGGCGGAACTGAACCCTTCGACACCGCCGCTGCTGCTGACCAGAGGGGCATACTAATTGTAAAGCTGCGTCGGGGCCAAGAGCTCAGGCTCCGAGCAATTGCTAGGAAGGGAATTGGCAAGGACCATGCCAAGTGGTCCCCCGCCGCTACTGTGACTTTCATGTATGAGCCTGAAATACGTATCAATGAAGAACTCATGGAAACATTGACACTCGAGGAAAAACGAAATTTGGTGGAGAGTAGCCCTACAAAAGTGTTCAACATTGATCCCAACACTCAACAGGTGGTAGTTGAGGATGCAGAGGCATATACATATGATGATGAGGTCATCAAGAAAGCAGATGCCATGGGAAAGCCCGGATTGATAGAGATCAATGCCAAGGAGGACAGCTTTATCTTCACTGTTGAAACAACTGGCGCTATCACAGCTTATGAGCTGATCATGAACGCTATCACGGTC TTGAGGCAAAAG TTAGATGCTGTTCGTCTACAAGATGACGATGCTGACCTTGGCG AGCTTGGTGCCCACCTTGTTGGAGGCT AAGCGCAGAGCTGC TTGTCTTGTG TTACCCACAAAG TAGGTTTCTCTAA CT ATCGTGCTAGA GGC AAAACATGA TGGTTT CTTC GTTT GGA TC AATCT AGT ACAT GT AATCT CCC TGATC TGT GCC ATT AAAT CTGTG CTGGAACTTTGTGTGGACGCACCAGACTACTGTTCAATTTGATGGCAAATCGACACACCAGCCAGCTCATCTCTGGGACAAATGTGGAGCTGCTAGTAATACTG ] [+] EMBL AU160827 [ GCTCCGTCGAGTTCCACCTCGCCGCCCGCGCCACCGACTCCGACCAGACCCTCGAGGTCACCTCCAACGACCTCCGCTCCACCGACCCCAAGGTCTGCCCCGTCGACCAGGCTAGGGCCTACCAGCACGCCCTCGGCGGAACTGAACCCTTCGACACCGCCGCTGCTGCTGACCAGAGGGGCATACTAATTGTAAAGCTGCGTCGGGGCCAAGAGCTCAGGCTCCGAGCAATTGCTAGGAAGGGAATTGGCAAGGACCATGCCAAGTGGTCCCCCGCCGCTACTGTGACTTTCATGTATGAGCCTGAAATACGTATCAATGAAGAACTCATGGAAACATTGACACTCGAGGAAAAACGAAATTTGGTGGAGAGTAGCCCTACAAAAGTGTTCAACATTGATCCCAACACTCAACAGGTGGTAGTTGAGGATGCAGAGGCATATACATATGATGATGAGGTCATCAAGAAAGCAGATGCCATGGGAAAGCCCGGATTGATAGAGATCAATGCCAAGGAGGACAGCTTTATCTTCACTGTTGAAACAACTGGCGCTATCACAGCTTATGAGCTGATCATGAACGCTATCACGGTC TTGAGGCAAAAGTTTAGATGCTGTTCGTCTACAAGATGACGATGCTGA CTTGGCGNAGCTTGGTGCCCAACTTGTTGGAAGCTAAAGCGCANAANTGCTTTGTCTTGTGTTTACCCACAAAGNAAGNTTTCTCTAANCTAATCGTGCTAGAAGGGCAAAAACATGATTGGTTTCCTTCGGTTTGGGATTCAAACCTAAGTAACATGGTNAATCTNCCCTTGANCTTGTGGCCAATTAAAATCCTGTGCCTGGgaa ] [-] EMBL OSC655 [ TTATNA CTGATCATGAACGCTATCACGGTCTTTGAGGCAAAAG TTAGATGCTGTCCGTCTACAAGATGACGATGCTGACCTTGGCG AGCTTGGTGCCCACCTTGTTGGAGGCTAAAGCGCAGAGCTGC TTGTCTTGTG TTACCCACAAAG TAGGTTTCTCTAA CT ATCGTGCTAGA GGC AAAACATGA TGGTTT CTTC GTTT GGA TC AATCT AGT ACAT GT AATCT CCC TGATC TGT GCC ATT AAAT CTGTG CTGGAACTTTGTGTGGACGCACCAGACTACTGTTCAATTTGATGGCAAATCGACACACCAGCCAGCTCATCTCTGGGACAAATGTGGAGCTGCTAGTAATACTGAATGCTGTTCACCTGTGATGTGTCTTTGGGACTTGCAGCCCGTCGTTTTGATTGGCCTACNGGTANNANANA ] [+] EMBL BQ907794 [ GTCTACAAGATGACGATGCTGACCTTGGCG AGCTTGGTGCCCACCTTGTTGGAGGCT AAGCGCAGAGCTGC TTGTCTTGTG TTACCCACAAAG TAGGTTTCTCTAA CT ATCGTGCTAGA GGC AAAACATGA TGGTTT CTTC GTTT GGA TC AATCT AGT ACAT GT AATCT CCC TGATC TGTGGCC ATT AAAT CTGTG CTGGAACTTTGTGTGGACGCACCAGACTACTGTTCAATTTGAT GC AATCGACACACCAGCCAGCTCATCTCTGGGACAAATGTGGAGCTGCTAGTAATACTGAATGCTGTTCACCTGTGATGTGTCTTTGGGACTTGCAGCCCGTCGTTTTGATT GCCTAC GGTAAAAaaa ] consensusID : consensus_13851#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 712 fasta sequence [GGGNAATTGGCAAGGNCCATGCCAANGTGGTCCCCCGCCGCTTACTGTGACTTTNCATGTATGAGCCCTGAAATACGTATCAATGAGGAACTCATGGAACCATTGACACTCGNGGAAAANCGAAATTTGGTGGAGAGTANCCCTACAAAAGTGTTCAACATTGATCCCAACACTCAACAGGTGGTAGTTGAGGATNCAGAGGCATATACATATGATGATGAGGTCATCAAGAAAGCAGATNCCATGGGAAAGCCCGGATTGATAGAGATCAATGCCAAGGAGGACAGCTTTATCTTCACTGTTGAAACAACTGGCGCTATCACAGCTTATGAGCTGATCATGAACGCTATCACGGTCTTGAGGCAAAAGTTAGATGCTGTTCGTCTACAAGATGACGATGCTGNCCTTGGCGAGCTTGGTGCCCNCCTTGTTGGAGGCTAAGCGCAGAGCTGCTTGTCTTGTGTTNCCCACAAAGTAGGTTTCTCTAACTATCGTGCTAGAGGCAAAACATGATGGTTTCTTCGTTTGGATCAATCTAGTACATGTAATCTCCCTGATCTGTGCCATTAAATCTGTGCTGGAACTTTGTGTGGACGCACCAGACTACTGTTCAATTTGATGGCAAATCGACACACCAGCCAGCTCATCTCTGGGACAAATGTGGAGCTGCTAGTAATACTGAATGCTGTTCAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU108696 [GGGNAATTGGCAAGGNCCATGCCAANGTGGTCCCCCGCCGCTTACTGTGACTTTNCATGTATGAGCCCTGAAATACGTATCAATGAGGAACTCATGGAACCATTGACACTCGNGGAAAANCGAAATTTGGTGGAGAGTANCCCTACAAAAGTGTTCAACATTGATCCCAACACTCAACAGGTGGTAGTTGAGGATNCAGAGGCATATACATATGATGATGAGGTCATCAAGAAAGCAGATNCCATGGGAAAGCCCGGATTGATAGAGATCAATGCCAAGGAGGACAGCTTTATCTTCACTGTTGAAACAACTGGCGCTATCACAGCTTATGAGCTGATCATGAACGCTATCACGGTCTTGAGGCAAAAGTTAGATGCTGTTCGTCTACAAGATGACGATGCTGNCCTTGGCGAGCTTGGTGCCCNCCTTGTTGGAGGCTAAGCGCAGAGCTGCTTGTCTTGTGTTNCCCACAAAGTAGGTTTCTCTAACTATCGTGCTAGAGGCAAAACATGATGGTTTCTTCGTTTGGATCAATCTAGTACATGTAATCTCCCTGATCTGTGCCATTAAATCTGTGCTGGAACTTTGTGTGGACGCACCAGACTACTGTTCAATTTGATGGCAAATCGACACACCAGCCAGCTCATCTCTGGGACAAATGTGGAGCTGCTAGTAATACTGAATGCTGTTCAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CB000078 [ TATGAG CCTGAAATACGTATCAATGAAGAACTCCTTGAAACATTGACACTCGAGGAAAAACGAAATTTGGTGGAGAGTAGCCCTACAAAAGTGTTCAACATTGATCCCAACACTCAACAGGTGGTAGTTGAGGATGCAGAGGCATATACATATGATGATGAGGTCATCAAGAAAGCAGATGCCATGGGAAAGCCCGGATTGATAGAGATCAATGCCAAGGAGGACAGCTTTATCTTCACTGTTGAAACAACTGGCGCTATCACAGCTTATGAGCTGATCATGAACGCTATCACGGTCTTGAGGCAAAAGTTAGATGCTGTTCGTCTACAAGATGACGATGCTGACCTTGGCGAGCTTGGTGCCCACCTTGTTGGAGGCTAAGCGCAGAGCTGCTTGTCTTGTGTTACCCACAAAGTAGGTTTCTCTAACTATCGTGCTAGAGGCAAAACATGATGGTTTCTTCGTTTGGATCAATCTAGTACATGTAATCTCCCTGATCTGTGCCATTAAATCTGTGCTGGAACTTTGTGTGGACGCACCAGACTACTGTTCAATTTGATGGCAAATCGACACACCAGCCAGCTCATCTCTGGGACAAATGTGGAGCTGCTAGTAATACTGAATGCTGTTCACCAAAAAAAAAA ] consensusID : consensus_13851#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 695 fasta sequence [AATTTTAAAGCTGCTTCGGGCCCAAGAGCTCAGGCTCCGAGCATTTGCTAGGAAGGGAATTGGCAAGGACCATGCCAAGTGNTCCCCCGCCGCTACTGTGACTTTCATGTATGANCCTGAAATACGTATCAATGAAGAACTCATGGAAACATTGACACTCGAGGAAAAACGAAATTTGGTGGAGAGTANCCCTACA-AAAGTGTTCAACATTGATCCCAACACTCAACAGGTGGTAGTTGAGGATGCAGAGGCATATACATATGATGATGAGGTCATCAAGAAAGCAGATGCCATGGGAAAGCCCGGATTGATAGAGATCAATGCCAAGGAGGACAGCTTTATCTTCACTGTTGAAACAACTGGCGCTATCACAGCTTATGAGCTGATCATGAACGCTATCACGGTCTTGAGGCAAAAGTTAGATGCTGTTCGTCTACAAGATGACGATGCTGACCTTGGCGAGCTTGGTGCCCA-CCTTGTTGGAGGCTAAGCGCAGAGCTGCTTGTCTTGTGTTACCCACA-AAGTAGGTTTCTCTAACTATCGTGCTAGAGGCAAAACATGATGGTTTCTTCGTTTGGATCAATCTAGTACATGTAATCTCCCTGATCTGTGCCATTAAATCTGTGCTGGAACTTTGTGTGGACGCACCAGACTACTGTTCAATTTGATGGCAAATCGACACAAAAAAAAAAAAA] [+] EMBL AU101433 [AATTTTAAAGCTGCTTCGGGCCCAAGAGCTCAGGCTCCGAGCATTTGCTAGGAAGGGAATTGGCAAGGACCATGCCAAGTGNTCCCCCGCCGCTACTGTGACTTTCATGTATGANCCTGAAATACGTATCAATGAAGAACTCATGGAAACATTGACACTCGAGGAAAAACGAAATTTGGTGGAGAGTANCCCTACA AAAGTGTTCAACATTGATCCCAACACTCAACAGGTGGTAGTTGAGGATGCAGAGGCATATACATATGATGATGAGGTCATCAAGAAAGCAGATGCCATGGGAAAGCCCGGATTGATAGAGATCAATGCCAAGGAGGACAGCTTTATCTTCACTGTTGAAACAACTGGCGCTATCACAGCTTATGAGCTGATCATGAACGCTATCACGGTCTTGAGGCAAAAGTTAGATGCTGTTCGTCTACAAGATGACGATGCTGACCTTGGCGAGCTTGGTGCCCA CCTTGTTGGAGGCTAAGCGCAGAGCTGCTTGTCTTGTGTTACCCACA AAGTAGGTTTCTCTAACTATCGTGCTAGAGGCAAAACATGATGGTTTCTTCGTTTGGATCAATCTAGTACATGTAATCTCCCTGATCTGTGCCATTAAATCTGTGCTGGAACTTTGTGTGGACGCACCAGACTACTGTTCAATTTGATGGCAAATCGACACAAAAAAAAAAAAA] [+] EMBL BI809980 [ AGAGTAGCCCTACAGAAAGTGTTCAACATTGATCCCAACACTCAACAGGTGTT TTGAGGAT CAGAGGCATATACATATGATGATGAGGTCATCAAGAAA CAGAT CCATGGGAAAGCCCGGATTGATAGAGATCAATGCCAAGGAGGACAGCTTTATCTTCACTGTTGAAACAACTGGCGCTATCACAGCTTATGAGCTGATCATGAACGCTATCACGGTCTTGAGGCAGAAGTTAGATGCTGTTCGTCTACAAGATGACGATGCTGACCTTGGCGAGCTTGGTGCCCACCCTTGTTGGAGGCTAAGCGCAGAGCTGCTTGTCTTGTGTTACCCACACAAGTAGGTTTCTCTAACTATCGTGCTAGAGGC AAACATGATGGTTTCTTCGTTTGGATCAATCTAGTACATGTAATCTCCCTGATCTGTGCCATTAAATCTGTGCTGGAACTTTGTGTGGACGCACCAGACTACTGTTCAATTTGATGGC AATCGACACAAAAAAAAAA ] consensusID : consensus_13851#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 205 fasta sequence [GCGGACGNTGGACTNCCCGTCCCATCCCCTCCTTGTGTAGTTGTGTTGTTTGCGGCGAAACCCTAGGATTGTCTCCGGCGGCGGCGGCGGAAGGATCATGGAGCGGGCGGCAGGCGGCGTGTCGTACCAGCGGTTCCCGCGGGTGCGGATCCGCGAGCTGAAGGACGACTACGCCAAGTTCGAGCTCCGCGACACCGACGCCAGC] [-] EMBL AU197304 [GCGGACGNTGGACTNCCCGTCCCATCCCCTCCTTGTGTAGTTGTGTTGTTTGCGGCGAAACCCTAGGATTGTCTCCGGCGGCGGCGGCGGAAGGATCATGGAGCGGGCGGCAGGCGGCGTGTCGTACCAGCGGTTCCCGCGGGTGCGGATCCGCGAGCTGAAGGACGACTACGCCAAGTTCGAGCTCCGCGACACCGACGCCAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13851#1 ------------------------------------------------------------ consensus_13851#2 ------------------------------------------------------------ consensus_13851#0 CTATAGTGTTGGGTTTGGGTGTTGGTTTTTCCCCAAATCAAAAACCCTCCCGTCCCATCC 60 consensus_13851#3 ------------------------------------------------------------ consensus_13851#1 ------------------------------------------------------------ consensus_13851#2 ------------------------------------------------------------ consensus_13851#0 CCTCCTTGTGTAGTTGTGTTGTTTGCGGCGAAACCCTAGGATTGTCTCCGGCGGCGGCGG 120 consensus_13851#3 ------------------------------------------------------------ consensus_13851#1 ------------------------------------------------------------ consensus_13851#2 ------------------------------------------------------------ consensus_13851#0 CGGAAGGATCATGGAGCGGGCGGCAGGCGGCGTGTCGTACCAGCGGTTCCCGCGGGTGCG 180 consensus_13851#3 ------------------------------------------------------------ consensus_13851#1 ------------------------------------------------------------ consensus_13851#2 ------------------------------------------------------------ consensus_13851#0 GATCCGCGAGCTGAAGGACGACTACGCCAAGTTCGAGCTCCGCGACACCGACGCCAGCAT 240 consensus_13851#3 ------------------------------------------------------------ consensus_13851#1 ------------------------------------------------------------ consensus_13851#2 ------------------------------------------------------------ consensus_13851#0 GGCCAACGCCCTCCGCCGCGTCATGATCGCCGAGGTCCCCACCGTCGCCATCGACCTCGT 300 consensus_13851#3 ------------------------------------------------------------ consensus_13851#1 ------------------------------------------------------------ consensus_13851#2 ------------------------------------------------------------ consensus_13851#0 CGAGATCGAGGTCAACTCCTCCGTCCTCAACGACGAGTTCATCGCCCACCGCCTCGGCCT 360 consensus_13851#3 ------------------------------------------------------------ consensus_13851#1 ------------------------------------------------------------ consensus_13851#2 ------------------------------------------------------------ consensus_13851#0 CATCCCCCTCACCTCCGCCGCCGCCATGGCCATGCGCTTCTCCCGCGACTGCGACGCCTG 420 consensus_13851#3 ------------------------------------------------------------ consensus_13851#1 ------------------------------------------------------------ consensus_13851#2 ------------------------------------------------------------ consensus_13851#0 CGACGGCGACGGCTCCTGCGAGTACTGCTCCGTCGAGTTCCACCTCGCCGCCCGCGCCAC 480 consensus_13851#3 ------------------------------------------------------------ consensus_13851#1 ------------------------------------------------------------ consensus_13851#2 ------------------------------------------------------------ consensus_13851#0 CGACTCCGACCAGACCCTCGAGGTCACCTCCAACGACCTCCGCTCCACCGACCCCAAGGT 540 consensus_13851#3 ------------------------------------------------------------ consensus_13851#1 ------------------------------------------------------------ consensus_13851#2 ------------------------------------------------------------ consensus_13851#0 CTGCCCCGTCGACCAGGCTAGGGCCTACCAGCACGCCCTCGGCGGAACTGAACCCTTCGA 600 consensus_13851#3 ------------------------------------------------------------ consensus_13851#1 ------------------------------------------------------------ consensus_13851#2 ---------------------------------AATTTTAAAGCTGCTTCGGGCCCAAGA 27 consensus_13851#0 CACCGCCGCTGCTGCTGACCAGAGGGGCATACTAATTGTAAAGCTGCGTCGGGGCCAAGA 660 consensus_13851#3 ------------------------------------------------------------ consensus_13851#1 --------------------------GGGNAATTGGCAAGGNCCATGCCAANGTGGTCCC 34 consensus_13851#2 GCTCAGGCTCCGAGCATTTGCTAGGAAGGGAATTGGCAAGGACCATGCCAAG-TGNTCCC 86 consensus_13851#0 GCTCAGGCTCCGAGCAATTGCTAGGAAGGGAATTGGCAAGGACCATGCCAAG-TGGTCCC 719 consensus_13851#3 ------------------------------------------------------------ consensus_13851#1 CCGCCGCTTACTGTGACTTTNCATGTATGAGCCCTGAAATACGTATCAATGAGGAACTCA 94 consensus_13851#2 CCGCCGCT-ACTGTGACTTTC-ATGTATGANCC-TGAAATACGTATCAATGAAGAACTCA 143 consensus_13851#0 CCGCCGCT-ACTGTGACTTTC-ATGTATGAGCC-TGAAATACGTATCAATGAAGAACTCA 776 consensus_13851#3 --------------------------------------------GCGGACGNTGGACTNC 16 * * * *** consensus_13851#1 TGGAACCATTGACACTCGNGGAAAANCGAAATTTGGTGGAGAGTANCCCTACAAAAGTGT 154 consensus_13851#2 TGGAAACATTGACACTCGAGGAAAAACGAAATTTGGTGGAGAGTANCCCTACAAAAGTGT 203 consensus_13851#0 TGGAAACATTGACACTCGAGGAAAAACGAAATTTGGTGGAGAGTAGCCCTACAAAAGTGT 836 consensus_13851#3 CCGTCCCATC--CCCTCCTTGTGTAGTTGTGTTGTTTGCGGCGAAACCCTAGGATTGTCT 74 * *** * *** * * ** ** * * * ***** * ** * consensus_13851#1 TCAACATTGATCCCAACACTCAACAGGTGGTAGTTGAGGATNCAGA-GGCATATACATAT 213 consensus_13851#2 TCAACATTGATCCCAACACTCAACAGGTGGTAGTTGAGGATGCAGA-GGCATATACATAT 262 consensus_13851#0 TCAACATTGATCCCAACACTCAACAGGTGGTAGTTGAGGATGCAGA-GGCATATACATAT 895 consensus_13851#3 CCGGCG------GCGGCGGCGGAAGGATCATGGAGCGGGCGGCAGGCGGCGTGT-CGTAC 127 * * * * * * * * * ** *** *** * * * ** consensus_13851#1 GATGATGAGGTCATCAAGAAAGCAGATNC-CATGGGAAAGCCCGGATTGATAGAGATCAA 272 consensus_13851#2 GATGATGAGGTCATCAAGAAAGCAGATGC-CATGGGAAAGCCCGGATTGATAGAGATCAA 321 consensus_13851#0 GATGATGAGGTCATCAAGAAAGCAGATGC-CATGGGAAAGCCCGGATTGATAGAGATCAA 954 consensus_13851#3 CA----GCGGTTCCCGCGGGTGCGGATCCGCGAGCTGAAGGACGACTACGCCAAGTTCGA 183 * * *** * * ** *** * * * *** ** * ** ** * consensus_13851#1 TGCCAAGGAGGACAGCTTTATCTTCACTGTTGAAACAACTGGCGCTATCACAGCTTATGA 332 consensus_13851#2 TGCCAAGGAGGACAGCTTTATCTTCACTGTTGAAACAACTGGCGCTATCACAGCTTATGA 381 consensus_13851#0 TGCCAAGGAGGACAGCTTTATCTTCACTGTTGAAACAACTGGCGCTATCACAGCTTATGA 1014 consensus_13851#3 GCTCCGCGACACCGACGCCAGC-------------------------------------- 205 * ** * * * * consensus_13851#1 GCTGATCATGAACGCTATCACGGTCTTGAGGCAAAAGTTAGATGCTGTTCGTCTACAAGA 392 consensus_13851#2 GCTGATCATGAACGCTATCACGGTCTTGAGGCAAAAGTTAGATGCTGTTCGTCTACAAGA 441 consensus_13851#0 GCTGATCATGAACGCTATCACGGTCTTGAGGCAAAAGTTAGATGCTGTTCGTCTACAAGA 1074 consensus_13851#3 ------------------------------------------------------------ consensus_13851#1 TGACGATGCTGNCCTTGGCGAGCTTGGTGCCCNCCTTGTTGGAGGCTAAGCGCAGAGCTG 452 consensus_13851#2 TGACGATGCTGACCTTGGCGAGCTTGGTGCCCACCTTGTTGGAGGCTAAGCGCAGAGCTG 501 consensus_13851#0 TGACGATGCTGACCTTGGCGAGCTTGGTGCCCACCTTGTTGGAGGCTAAGCGCAGAGCTG 1134 consensus_13851#3 ------------------------------------------------------------ consensus_13851#1 CTTGTCTTGTGTTNCCCACAAAGTAGGTTTCTCTAACTATCGTGCTAGAGGCAAAACATG 512 consensus_13851#2 CTTGTCTTGTGTTACCCACAAAGTAGGTTTCTCTAACTATCGTGCTAGAGGCAAAACATG 561 consensus_13851#0 CTTGTCTTGTGTTACCCACAAAGTAGGTTTCTCTAACTATCGTGCTAGAGGCAAAACATG 1194 consensus_13851#3 ------------------------------------------------------------ consensus_13851#1 ATGGTTTCTTCGTTTGGATCAATCTAGTACATGTAATCTCCCTGATCTGTGCCATTAAAT 572 consensus_13851#2 ATGGTTTCTTCGTTTGGATCAATCTAGTACATGTAATCTCCCTGATCTGTGCCATTAAAT 621 consensus_13851#0 ATGGTTTCTTCGTTTGGATCAATCTAGTACATGTAATCTCCCTGATCTGTGCCATTAAAT 1254 consensus_13851#3 ------------------------------------------------------------ consensus_13851#1 CTGTGCTGGAACTTTGTGTGGACGCACCAGACTACTGTTCAATTTGATGGCAAATCGACA 632 consensus_13851#2 CTGTGCTGGAACTTTGTGTGGACGCACCAGACTACTGTTCAATTTGATGGCAAATCGACA 681 consensus_13851#0 CTGTGCTGGAACTTTGTGTGGACGCACCAGACTACTGTTCAATTTGATGGCAAATCGACA 1314 consensus_13851#3 ------------------------------------------------------------ consensus_13851#1 CACCAGCCAGCTCATCTCTGGGACAAATGTGGAGCTGCTAGTAATACTGAATGCTGTTCA 692 consensus_13851#2 CAAAAAAAAAAAAA---------------------------------------------- 695 consensus_13851#0 CACCAGCCAGCTCATCTCTGGGACAAATGTGGAGCTGCTAGTAATACTGAATGCTGTTCA 1374 consensus_13851#3 ------------------------------------------------------------ consensus_13851#1 AAAAAAAAAAAAAAAAAAAA---------------------------------------- 712 consensus_13851#2 ------------------------------------------------------------ consensus_13851#0 CCTGTGATGTGTCTTTGGGACTTGCAGCCCGTCGTTTTGATTGGCCTACGGTANAAGANA 1434 consensus_13851#3 ------------------------------------------------------------ consensus_13851#1 ------------------------------------------------------------ consensus_13851#2 ------------------------------------------------------------ consensus_13851#0 CGGCTTGCTGTGTTGAATGCTGGGTTTTGTGCAGGTCTCCCCAGATTCATATGCTCAATG 1494 consensus_13851#3 ------------------------------------------------------------ consensus_13851#1 ------------------------------------------------------------ consensus_13851#2 ------------------------------------------------------------ consensus_13851#0 CAATGTGGCGTTTAATGCTGTACATCTCCAGGTTAATTGCTGAATAGTGGTGGTACTAGA 1554 consensus_13851#3 ------------------------------------------------------------ consensus_13851#1 ------------------------------------------------------------ consensus_13851#2 ------------------------------------------------------------ consensus_13851#0 TGGTTTGATGGATTCGCTGAGCGAGATGCGTGGAGTTAAGCGCGCGTGCATGTGGATCAG 1614 consensus_13851#3 ------------------------------------------------------------ consensus_13851#1 ------------------------------------------------------------ consensus_13851#2 ------------------------------------------------------------ consensus_13851#0 TACTACGATCTTGATGGATGTACCAAATGATTTGGTAATGTACTGATATTTTGGACCTAA 1674 consensus_13851#3 ------------------------------------------------------------ consensus_13851#1 --------------- consensus_13851#2 --------------- consensus_13851#0 ATGTTGGATCTTTCC 1689 consensus_13851#3 --------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||