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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13860#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1533 fasta sequence
[TAAAGGAAAATCTTCCGTGTCGTCGTCTCCTCCGCTCCTTGCGCCAAGACGAGTCGCGGCTCAACAGCGGAGAGGCGGCGATCTCCCATCTGGCGAGCAGAGCAGGGGAGGGGAAGGGATCTTGTTAGAGTGGCATGGCTGCTGAATGTGGAAGTGGCAACTGTGATGCTTGGGCAGCGAGAGATCCTTCAGGGATCCTCTCCCCGTACAAGTTCAACCGCAGGGCTGTACAAAGTGACGATGTTTCCTTGAGGATCACACACTGTGGTGTTTGTTATGCTGATGTTGCATGGACAA-GGAATATACTCAACAATTCGATGTA-CCCTTTAGTCCCTGGGCATGAGATAGCAGGAGTTGTAACTGAGGTTGGTGCAGACGTCAAGAGCTTCAAAGTGGGTGACCATGTAGGTGTTGGCACATACGTGAATTCATGCCGGGACTGTGAGAACTGCAATAGCTCTCTAGAGAACTACTGCTCACAACATGTCTTCACTTTCAATGGTGTTGACACTGATGGGACTGTCACAAAGGGAGGATATTCTACTCACATAGTAGTACATGAGAGGTATTGCTTTAAAATACCTGATGGCTACCCTTTGGAAAAGGCAGCACCTTTACTTTGTGCTGGCATCACTGTATATAGTCCGATGATGCGGCATAATATGAACCAGCCAGGGAAGTCACTCGGCGTCATTGGACTTGGTGGCTTGGGTCACATGGCAGTAAAATTTGGGAAAGCCTTTGGACTGAAAGTCACAGTTATTAGTACTAGTGAATCAAAGAGAAAAGAAGCTATTGACCTTCTTGGTGCAGATAATTTCGTGGTGTCATCGGATGAAAATCAGATGGAGACCTTGAAAAGCTCTCTGAACTTCATTATTGACACAGCCTCCGGCGATCACCCATTCGATCCTTATCTCACGCTTCTGAAAGTTGGTGGTGTAATGGCACTACTTAGCTTCCCAAGTGAAATCAAAGTGCATCCTGCAAACCTTAATCTCGGTGGGCGGAGTTTATCTGGTAGTGTAACTGGAGGTACGAAGGACATCCAGGAGATGATAAACTTCTGTGCGGCAAACAAAATCTACCCAGATATCGAGATGATCAAGATAGATTACATCAACGAGGCTCTTCAGAGGCTTGTTGACCGGGATGTCAGATTTCGCTTTGTAATCGACATTGAGAACTCGTTCAAGTAGTATCTTGATATCTTCAGTACACCATTAATGATAGAAGTGTATGCAATAATAATAAGTTTAAATGTCCTACAAGATGATGAGACCATGAGACAGTTCCAGAACAAAATGTTCCATTTTAAGAAGCAATTTGGTTCTGTTTTCAGTTATTTTCAGGAGTAAATTGTATTGGTGGTACACAAACTTATTTGGTGGGTGTAATTTAATACATAAACTTGTTTGTTGGGTGTAATTTAGTATATAAATTTGTTTGTTGGGTGTAGTTTAGTACATAAACTAAACTTGTGAAGTACTTATTTTGGTACATGAACTTATCTAATTCGTATGAATCCCAATC]
[+] EMBL AK068221 [TAAAGGAAAATCTTCCGTGTCGTCGTCTCCTCCGCTCCTTGCGCCAAGACGAGTCGCGGCTCAACAGCGGAGAGGCGGCGATCTCCCATCTGGCGAGCAGAGCAGGGGAGGGGAAGGGATCTTGTTAGAGTGGCATGGCTGCTGAATGTGGAAGTGGCAACTGTGATGCTTGGGCAGCGAGAGATCCTTCAGGGATCCTCTCCCCGTACAAGTTCAACCGCAGGGCTGTACAAAGTGACGATGTTTCCTTGAGGATCACACACTGTGGTGTTTGTTATGCTGATGTTGCATGGACAA GGAATATACTCAACAATTCGATGTA CCCTTTAGTCGCTGGGCATGAGATAGCAGGAGTTGTAACTGAGGTTGGTGCAGACGTCAAGAGCTTCAAAGTGGGTGACCATGTAGGTGTTGGCACATACGTGAATTCATGCCGGGACTGTGAGAACTGCAATAGCTCTCTAGAGAACTACTGCTCACAACATGTCTTCACTTTCAATGGTGTTGACACTGATGGGACTGTCACAAAGGGAGGATATTCTACTCACATAGTAGTACATGAGAGGTATTGCTTTAAAATACCTGATGGCTACCCTTTGGAAAAGGCAGCACCTTTACTTTGTGCTGGCATCACTGTATATAGTCCGATGATGCGGCATAATATGAACCAGCCAGGGAAGTCACTCGGCGTCATTGGACTTGGTGGCTTGGGTCACATGGCAGTAAAATTTGGGAAAGCCTTTGGACTGAAAGTCACAGTTATTAGTACTAGTGAATCAAAGAGAAAAGAAGCTATTGACCTTCTTGGTGCAGATAATTTCGTGGTGTCATCGGATGAAAATCAGATGGAGACCTTGAAAAGCTCTCTGAACTTCATTATTGACACAGCCTCCGGCGATCACCCATTCGATCCTTATCTCACGCTTCTGAAAGTTGGTGGTGTAATGGCACTACTTAGCTTCCCAAGTGAAATCAAAGTGCATCCTGCAAACCTTAATCTCGGTGGGCGGAGTTTATCTGGTAGTGTAACTGGAGGTACGAAGGACATCCAGGAGATGATAAACTTCTGTGCGGCAAACAAAATCTACCCAGATATCGAGATGATCAAGATAGATTACATCAACGAGGCTCTTCAGAGGCTTGTTGACCGGGATGTCAGATTTCGCTTTGTAATCGACATTGAGAACTCGTTCAAGTAGTATCTTGATATCTTCAGTACACCATTAATGATAGAAGTGTATGCAATAATAATAAGTTTAAATGTCCTACAAGATGATGAGACCATGAGACAGTTCCAGAACAAAATGTTCCATTTTAAGAAGCAATTTGGTTCTGTTTTCAGTTATTTTCAGGAGTAAATTGTATTGGTGGTACACAAACTTATTTGGTGGGTGTAATTTAATACATAAACTTGTTTGTTGGGT ]
[+] EMBL CF318418 [ AATCTTCCGTGTCGTCGTCTCCTCCGCTCCTTGCGCCAAGACGAGTCGCGGCTCAACAGCGGAGAGGCGGCGATCTCCCATCTGGCGAGCAGAGCAGGGGAGGGGAAGGGATCTTGTTAGAGTGGCATGGCTGCTGAATGTGGAAGTGGCAACTGTGATGCTTGGGCAGCGAGAGATCCTTCAGGGATCCTCTCCCCGTACAAGTTCAACCGCAGGGCTGTACAAAGTGACGATGTTTCCTTGAGGATCACACACTGTGGTGTTTGTTATGCTGATGTTGCATGGACAA GGAATATACTCAACAATTCGATGTA CCCTTTAGTCCCTGGGCATGAGATAGCAGGAGTTGTAACTGAGGTTGGTGCAGACGTCAAGAGCTTCAAAGTGGGTGACCATGTAGGTGTTGGCACATACGTGAATTCATGCCGGGACTGTGAGAACTGCAATAGCTCTCTAGAGAACTACTGCTCACAACATGTCTTCACTTTCAATGGTGTTGACACTGATGGGACTGTCACAAAGGGAGGATATTCTACTCACATAG ]
[+] EMBL CB653863 [ TCCGCTCCTTGCGCCAAGACGAGTCGCGGCTCAACAGCGGAGAGGCGGCGATCTCCCATCTGGCGAGCAGAGCAGGGGAGGGGAAGGGATCTTGTTAGAGTGGCATGGCTGCTGAATGTGGAAGTGGCAACTGTGATGCTTGGGCAGCGAGAGATCCTTCAGGGATCCTCTCCCCGTACAAGTTCAACCGCAGGGCTGTACAAAGTGACGATGTTTCCTTGAGGATCACACACTGTGGTGTTTGTTATGCTGATGTTGCATGGACAA GGAATATACTCAACAATTCGATGTA CCCTTTAGTCCCTGGGCATGAGATAGCAGGAGTTGTAACTGAGGTTGGTGCAGACGTCAAGAGCTTCAAAGTGGGTGACCATGTAGGTGTTGGCACATACGTGAATTCATGCCGGGACTGTGAGAACTGCAATAGCTCTCTAGAGAACTACTGCTCACAACATGTCTTCACTTTCAATGGTGTTGACACTGATGGGACTGTCACAAAGGGAGGATATTCTACTCACATAGTAGTACATGAGAGGTATTGCTTTAAAATACCTGATGGCTACCCTTTGGAAAAGGCAGCACCTTTACTTTGTGCTGGCATCACTGTATATAGTCCGATGATGCGGCATAATATGAACCAGCCAGGGAAGTCACTCGGCGTCATTGGACTTGGTGGCTTGGGTCCCATGGCAGTAAAATTTGGGAAAG ]
[+] EMBL C73572 [ GGAGAGGCGGCGATCTCCCATCTGGCGAGCAGAGCAGGGGAGGGGAAGGGATCTTGTTAGAGTGGCATGGCTGCTGAATGTGGAAGTGGCAACTGTGATGCTTGGGCAGCGAGAGANCCTTCAGGGATCCTCTTCCCGTACAAGTTCAACCGCA GGCTGTACAAAGTGACGATGTTTCCTTGAGGATCACACACTGTGGTGTTTGTNATGCTGATGTTGCATGGACAANGGAATATACTCAACAATTCGATGTACCCCTTTAat ]
[-] EMBL CB618829 [ AAATTTGGGAAAGCCTTTGGACTGAAAGTCACAGTTATTAGTACTAGTGAATCAAAGAGAAAAGAAGCTATTGACCTTCTTGGTGCAGATAATTTCGTGGTGTCATCGGATGAAAATCAGATGGAGACCTTGAAAAGCTCTCTGAACTTCATTATTGACACAGCCTCCGGCGATCACCCATTCGATCCTTATCTCACGCTTCTGAAAGTTGGTGGTGTAATGGCACTACTTAGCTTCCCAAGTGAAATCAAAGTGCATCCTGCAAACCTTAATCTCGGTGGGCGGAGTTTATCTGGTAGTGTAACTGGAGGTACGAAGGACATCCAGGAGATGATAAACTTCTGTGCGGCAAACAAAATCTACCCAGATATCGAGATGATCAAGATAGATTACATCAACGAGGCTCTTCAGAGGCTTGTTGACCGGGATGTCAGATTTCGCTTTGTAATCGACATTGAGAACTCGTTCAAGTAGTATCTTGATATCTTCAGTACACCATTAATGATAGAAGTGTATGCAATAATAATAAGTTTAAATGTCCTACAAGATGATGAGACCATGAGACAGTTCCAGAACAAAATGTTCCATTTTAAGAAGCAATTTGGTTCTGTTTTCAGTTATTTTCAGGAGTAAATTGTATTGGTGGTACTCAGAGGTATTTGGTGGGTGTAATTT ]
[-] EMBL CB653864 [ TGGGAAAGCCTTTGGACTGAAAGTCACAGTTATTAGTACTAGTGAATCAAAGAGAAAAGAAGCTATTGACCTTCTTGGTGCAGATAATTTCGTGGTGTCATCGGATGAAAATCAGATGGAGACCTTGAAAAGCTCTCTGAACTTCATTATTGACACAGCCTCCGGCGATCACCCATTCGATCCTTATCTCACGCTTCTGAAAGTTGGTGGTGTAATGGCACTACTTAGCTTCCCAAGTGAAATCAAAGTGCATCCTGCAAACCTTAATCTCGGTGGGCGGAGTTTATCTGGTAGTGTAACTGGAGGTACGAAGGACATCCAGGAGATGATAAACTTCTGTGCGGCAAACAAAATCTACCCAGATATCGAGATGATCAAGATAGATTACATCAACGAGGCTCTTCAGAGGCTTGTTGACCGGGATGTCAGATTTCGCTTTGTAATCGACATTGAGAACTCGTTCAAGTAGTATCTTGATATCTTCAGTACACCATTAATGATAGAAGTGTATGCAATAATAATAAGTTTAAATGTCCTACAAGATGATGAGACCATGAGACAGTTCCAGAACAAAATGTTCCATTTTAAGAAGCAATTTGGTTCTGTTTTCAGTTATTTTCAGGAGTAAATTGTATTGGTGGTACACAAACTTATTTGGTGGGTGTAATTTAATACATAAACTTGTTTGTTGGGTGTAATTTAGTATATAAATTTGTTTGTTGGGTGTAGTTTAGTACATAAACTAAACTTGTGAAGTACTTATTTTGGTACATGAACTTATCTAATTCGTATGAATCCCAATC]
consensusID : consensus_13860#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 797 fasta sequence
[ATGCGGCATAATATGAACCAGCCAGGGAAGTCACTCGGCGTCATTGGACTTGGTGGCTTGGGTCACATGGCAGTAAAATTTGGGAAAGCCTTTGGACTGAAAGTCACAGTTATTAGTACTAGTGAATCAAAGAGAAAAGAAGCTATTGACCTTCTTGGTGCAGATAATTTCGTGGTGTCATCGGATGAAAATCAGATGGAGACCTTGAAAAGCTCTCTGAACTTCATTATTGACACATCCTCCGGCGATCACCCATTCGATCCTTATCTCACGCTTCTGAAAGTTGGTGGTGTAATGGCACTACTTAGCTTCCCAAGTGAAATCAAAGTGCATCCTGCAAACCTTAATCTCGGTGGGCGGAGTTTATCTGGTAGTGTAACTGGAGGTACGAAGGACATCCAGGAGATGATAAACTTCTGTGCGGCAAACAAAATCTACCCAGATATCGAGATGATCAAGATAGATTACATCAACGAGGCTCTTCAGAGGCTTGTTGACCGGGATGTCAGATTTCGCTTTGTAATCGACATTGAGAACTCGTTCAA-GTAGTATC-TTGATATCTTCAGTACACCATTAATGATAGAAGTGTATGCAATAATAATAAGTTTAAATGTCCTACAAGATGATGAGACCATGAGACAGTTCCAGAACAAAATGTTCCATTTTAAGAAGCAATTTGGTTCTGTTTTCAGTTATTTTCAGGAGTAAATTGTATTGGTGGTACACAAACTTATTTGGTGGGTGTAATTTAATACATAAAACTTGTTTGTTGGGGTGTAAAAAAAAAAAAAAAAAAA]
[+] EMBL CB000206 [ATGCGGCATAATATGAACCAGCCAGGGAAGTCACTCGGCGTCATTGGACTTGGTGGCTTGGGTCACATGGCAGTAAAATTTGGGAAAGCCTTTGGACTGAAAGTCACAGTTATTAGTACTAGTGAATCAAAGAGAAAAGAAGCTATTGACCTTCTTGGTGCAGATAATTTCGTGGTGTCATCGGATGAAAATCAGATGGAGACCTTGAAAAGCTCTCTGAACTTCATTATTGACACATCCTCCGGCGATCACCCATTCGATCCTTATCTCACGCTTCTGAAAGTTGGTGGTGTAATGGCACTACTTAGCTTCCCAAGTGAAATCAAAGTGCATCCTGCAAACCTTAATCTCGGTGGGCGGAGTTTATCTGGTAGTGTAACTGGAGGTACGAAGGACATCCAGGAGATGATAAACTTCTGTGCGGCAAACAAAATCTACCCAGATATCGAGATGATCAAGATAGATTACATCAACGAGGCTCTTCAGAGGCTTGTTGACCGGGATGTCAGATTTCGCTTTGTAATCGACATTGAGAACTCGTTCAA GTAGTATC TTGATATCTTCAGTACACCATTAATGATAGAAGTGTATGCAATAATAATAAGTTTAAATGTCCTACAAGATGATGAGACCATGAGACAGTTCCAGAACAAAATGTTCCATTTTAAGAAGCAATTTGGTTCTGTTTTCAGTTATTTTCAGGAGTAAATTGTATTGGTGGTACACAAACTTATTTGGTGGGTGTAATTTAATACATAAAACTTGTTTGTTGGGGTGTAAAAAAAAAAAAAAAAAAA]
[+] EMBL CB000195 [ATGCGGCATAATATGAACCAGCCAGGGAAGTCACTCGGCGTCATTGGACTTGGTGGCTTGGGTCACATGGCAGTAAAATTTGGGAAAGCCTTTGGACTGAAAGTCACAGTTATTAGTACTAGTGAATCAAAGAGAAAAGAAGCTATTGACCTTCTTGGTGCAGATAATTTCGTGGTGTCATCGGATGAAAATCAGATGGAGACCTTGAAAAGCTCTCTGAACTTCATTATTGACACATCCTCCGGCGATCACCCATTCGATCCTTATCTCACGCTTCTGAAAGTTGGTGGTGTAATGGCACTACTTAGCTTCCCAAGTGAAATCAAAGTGCATCCTGCAAACCTTAATCTCGGTGGGCGGAGTTTATCTGGTAGTGTAACTGGAGGTACGAAGGACATCCAGGAGATGATAAACTTCTGTGCGGCAAACAAAATCTACCCAGATATCGAGATGATCAAGATAGATTACATCAACGAGGCTCTTCAGAGGCTTGTTGACCGGGATGTCAGATTTCGCTTTGTAATCGACATTGAGAACTCGTTCAA GTAGTATC TTGATATCTTCAGTACACCATTAATGATAGAAGTGTATGCAATAATAATAAGTTTAAATGTCCTACAAGATGATGAGACCATGAGACAGTTCCAGAACAAAATGTTCCATTTTAAGAAGCAATTTGGTTCTGTTTTCAGTTATTTTCAGGAGTAAATTGTATTGGTGGTACACAAACTTATTTGGTGGGTGTAATTTAATACAT AAACTTG ]
[+] EMBL CB000858 [ GCGGCATAATATGAACCAGCCAGGGAAGTCACTCGGCGTCATTGGACTTGGTGGCTTGGGTCACATGGCAGTAAAATTTGGGAAAGCCTTTGGACTGAAAGTCACAGTTATTAGTACTAGTGAATCAAAGAGAAAAGAAGCTATTGACCTTCTTGGTGCAGATAATTTCGTGGTGTCATCGGATGAAAATCAGATGGAGACCTTGAAAAGCTCTCTGAACTTCATTATTGACACATCCTCCGGCGATCACCCATTCGATCCTTATCTCACGCTTCTGAAAGTTGGTGGTGTAATGGCACTACTTAGCTTCCCAAGTGAAATCAAAGTGCATCCTGCAAACCTTAATCTCGGTGGGCGGAGTTTATCTG ]
[+] EMBL CA999443 [ GCGGCATAATATGAACCAGCCAGGGAAGTCACTCGGCGTCATTGGACTTGGTGGCTTGGGTCACATGGCAGTAAAATTTGGGAAAGCCTTTGGACTGAAAGTCACAGTTATTAGTACTAGTGAATCAAAGAGAAAAGAAGCTATTGACCTTCTTGGTGCAGATAATTTCGTGGTGTCATCGGATGAAAATCAGATGGAGACCTTGAAAAGCTCTCTGAACTTCATTATT ]
[-] EMBL CB483490 [ AAGATAGATTACATCAACGAGGCTCTTCAGAGGCTTGTTGACCGGGATGTCAGATTTCGCTTTGTAATCGACATTGAGAACTCGTTCAAGGTAGTNTCGTNGATATGTNCAGTA ]
consensusID : consensus_13860#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 641 fasta sequence
[GCCCCTACAAGTGCGCGGCTCAACAGCGGAGAGGCGGCGATCTCCCATCTGGCGAGCAGAGCAGGGGAGGGGAAGGGATCTTGTTAGAGTGGCATGGCTGCTGAATGTGGAAGTGGCAACTGTGATGCTTGGGCGGCGAGAGATCCTTCACGGATCCTCTCCCCGTACAAGTTCAACCGCAGGGCTGTACAAAGTGACGATGTTTCCTTGAGGATCACACACTGTGGTGTTTGTTATGCTGATGTTGCATGGACAAGGAATATACTCAACAATTCGATGTACCCTTTAGTCCCTGGGTAAAATTATTAACTTTGTTACTTGAATTTTAACAAAAGTATGGAAAAGAATAAACTTCTGTTACAGACTATAAATTCATCCATTTACCTACTGTATTTGGTGTAAAGATAAAAGTTCATGAAATTGTGTCTAAATTTCAATATGAGTAGGCATGACATATCACGAGTTGTAACTGAGGTTGGTGCAGACGTCAAGAGCTTCAGAGTGGGTGACCATGTAGGTGTTGGCACATACGTGAATTCCTGCCGGGACTGTGAGAACTGCAATAGCTCTCTATAGAACTACTGCTCGCAACATGTCTTCACTTTCAATGGTGTTGACACTGATGGGACTGTCACAAAGGG]
[+] EMBL CB618828 [GCCCCTACAAGTGCGCGGCTCAACAGCGGAGAGGCGGCGATCTCCCATCTGGCGAGCAGAGCAGGGGAGGGGAAGGGATCTTGTTAGAGTGGCATGGCTGCTGAATGTGGAAGTGGCAACTGTGATGCTTGGGCGGCGAGAGATCCTTCACGGATCCTCTCCCCGTACAAGTTCAACCGCAGGGCTGTACAAAGTGACGATGTTTCCTTGAGGATCACACACTGTGGTGTTTGTTATGCTGATGTTGCATGGACAAGGAATATACTCAACAATTCGATGTACCCTTTAGTCCCTGGGTAAAATTATTAACTTTGTTACTTGAATTTTAACAAAAGTATGGAAAAGAATAAACTTCTGTTACAGACTATAAATTCATCCATTTACCTACTGTATTTGGTGTAAAGATAAAAGTTCATGAAATTGTGTCTAAATTTCAATATGAGTAGGCATGACATATCACGAGTTGTAACTGAGGTTGGTGCAGACGTCAAGAGCTTCAGAGTGGGTGACCATGTAGGTGTTGGCACATACGTGAATTCCTGCCGGGACTGTGAGAACTGCAATAGCTCTCTATAGAACTACTGCTCGCAACATGTCTTCACTTTCAATGGTGTTGACACTGATGGGACTGTCACAAAGGG]
consensusID : consensus_13860#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 531 fasta sequence
[GAGGTCGTCTCCTCCGCTCCTTGCGCCANGGACGAGTCGCGGCTCAACAGCGGAAGAGGCGGCGATCTCCCATCTGGCGAGCANAGCANGGGAAAGGGAANGGATCTTGTTANANTGGCATGGCTGCTGAATGTGGAAGTGGCAACTGTGATGCTTGGGCAGCGAGAGATCCTTCAAGGATCCTCTCCCCGTACAAGTTCAACCGCAGGGCTGTNCAAAGTGACCATGTTTCCTTGAGGATCACACACTGTGGTGTTTGTTATGCTGATGTTGCATGGACAANGAATATACTCNACAATTCNATGTNCCCTTTAGTCCCTGGGCATGAAATACANGAGTTGTAACTGANGTTGGTGCANACGTCCAGANCTTCAAANTGGGTGACCNTGTNNGTGTTGGCNCATACNTNAATTCNTGCCGGGACTGTGANAACTGCCATANCTCTCTANAAAACTACTGCTCNCAACNTGTCTTCNCTTTTCCATGGGTGTTTGACNCNGAATGGGACTGTCCCNAAGGGGAGGATATTCC]
[+] EMBL BE229846 [GAGGTCGTCTCCTCCGCTCCTTGCGCCANGGACGAGTCGCGGCTCAACAGCGGAAGAGGCGGCGATCTCCCATCTGGCGAGCANAGCANGGGAAAGGGAANGGATCTTGTTANANTGGCATGGCTGCTGAATGTGGAAGTGGCAACTGTGATGCTTGGGCAGCGAGAGATCCTTCAAGGATCCTCTCCCCGTACAAGTTCAACCGCAGGGCTGTNCAAAGTGACCATGTTTCCTTGAGGATCACACACTGTGGTGTTTGTTATGCTGATGTTGCATGGACAANGAATATACTCNACAATTCNATGTNCCCTTTAGTCCCTGGGCATGAAATACANGAGTTGTAACTGANGTTGGTGCANACGTCCAGANCTTCAAANTGGGTGACCNTGTNNGTGTTGGCNCATACNTNAATTCNTGCCGGGACTGTGANAACTGCCATANCTCTCTANAAAACTACTGCTCNCAACNTGTCTTCNCTTTTCCATGGGTGTTTGACNCNGAATGGGACTGTCCCNAAGGGGAGGATATTCC]
consensusID : consensus_13860#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 199 fasta sequence
[GAGGCTTGTTGACCGGGATGTCAGATTTCGCTTTGTAATCGACATTGAGAACTCGTTCCAAGTAAGTATCTTGATATCTTCAGTACACCATTAATGATAGAAGTGTATGCAATAATAATAAGTTTAAATGTCCTACAAGATGATGNGACCATGAGACAGTTCCAGAACAAAATGTTCCATTTTAAGAAAAAAAAAAAAA]
[+] EMBL AU101335 [GAGGCTTGTTGACCGGGATGTCAGATTTCGCTTTGTAATCGACATTGAGAACTCGTTCCAAGTAAGTATCTTGATATCTTCAGTACACCATTAATGATAGAAGTGTATGCAATAATAATAAGTTTAAATGTCCTACAAGATGATGNGACCATGAGACAGTTCCAGAACAAAATGTTCCATTTTAAGAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13860#1 ------------------------------------------------------------
consensus_13860#4 ------------------------------------------------------------
consensus_13860#0 TAAAGGAAAATCTTCCGTGTCGTCGTCTCCTCCGCTCCTTGCGCCAAGACGAGTCGCGGC 60
consensus_13860#2 ------------------------------------------------------------
consensus_13860#3 ------------------------------------------------------------
consensus_13860#1 ------------------------------------------------------------
consensus_13860#4 ------------------------------------------------------------
consensus_13860#0 TCAACAGCGGAGAGGCGGCGATCTCCCATCTGGCGAGCAGAGCAGGGGAGGGGAAGGGAT 120
consensus_13860#2 ------------------------------------------------------------
consensus_13860#3 ------------------------------------------------------------
consensus_13860#1 ------------------------------------------------------------
consensus_13860#4 ------------------------------------------------------------
consensus_13860#0 CTTGTTAGAGTGGCATGGCTGCTGAATGTGGAAGTGGCAACTGTGATGCTTGGGCAGCGA 180
consensus_13860#2 ------------------------------------------------------------
consensus_13860#3 ------------------------------------------------------------
consensus_13860#1 ------------------------------------------------------------
consensus_13860#4 ------------------------------------------------------------
consensus_13860#0 GAGATCCTTCAGGGATCCTCTCCCCGTACAAGTTCAACCGCAGGGCTGTACAAAGTGACG 240
consensus_13860#2 ------------------------------------------------------------
consensus_13860#3 ------------------------------------------------------------
consensus_13860#1 ------------------------------------------------------------
consensus_13860#4 ------------------------------------------------------------
consensus_13860#0 ATGTTTCCTTGAGGATCACACACTGTGGTGTTTGTTATGCTGATGTTGCATGGACAAGGA 300
consensus_13860#2 ------------------------------------------------------------
consensus_13860#3 ------------------------------------------------------------
consensus_13860#1 ------------------------------------------------------------
consensus_13860#4 ------------------------------------------------------------
consensus_13860#0 ATATACTCAACAATTCGATGTACCCTTTAGTCCCTGGGCATGAGATAGCAGGAGTTGTAA 360
consensus_13860#2 ------------------------------------------------------------
consensus_13860#3 ------------------------------------------------------------
consensus_13860#1 ------------------------------------------------------------
consensus_13860#4 ------------------------------------------------------------
consensus_13860#0 CTGAGGTTGGTGCAGACGTCAAGAGCTTCAAAGTGGGTGACCATGTAGGTGTTGGCACAT 420
consensus_13860#2 ------------------------------------------------------------
consensus_13860#3 ------------------------------------------------------------
consensus_13860#1 ------------------------------------------------------------
consensus_13860#4 ------------------------------------------------------------
consensus_13860#0 ACGTGAATTCATGCCGGGACTGTGAGAACTGCAATAGCTCTCTAGAGAACTACTGCTCAC 480
consensus_13860#2 ------------------------------------------------------------
consensus_13860#3 ------------------------------------------------------------
consensus_13860#1 ------------------------------------------------------------
consensus_13860#4 ------------------------------------------------------------
consensus_13860#0 AACATGTCTTCACTTTCAATGGTGTTGACACTGATGGGACTGTCACAAAGGGAGGATATT 540
consensus_13860#2 ------------------------------------------------------------
consensus_13860#3 ------------------------------------------------------------
consensus_13860#1 ------------------------------------------------------------
consensus_13860#4 ------------------------------------------------------------
consensus_13860#0 CTACTCACATAGTAGTACATGAGAGGTATTGCTTTAAAATACCTGATGGCTACCCTTTGG 600
consensus_13860#2 ------------------------------------------------------------
consensus_13860#3 ------------------------------------------------------------
consensus_13860#1 --------------------------------------------------ATGCGGCATA 10
consensus_13860#4 ------------------------------------------------------------
consensus_13860#0 AAAAGGCAGCACCTTTACTTTGTGCTGGCATCACTGTATATAGTCCGATGATGCGGCATA 660
consensus_13860#2 ------------------------------------------------------------
consensus_13860#3 ------------------------------------------------------------
consensus_13860#1 ATATGAACCAGCCAGGGAAGTCACTCGGCGTCATTGGACTTGGTGGCTTGGGTCACATGG 70
consensus_13860#4 ------------------------------------------------------------
consensus_13860#0 ATATGAACCAGCCAGGGAAGTCACTCGGCGTCATTGGACTTGGTGGCTTGGGTCACATGG 720
consensus_13860#2 ------------------------------------GCCCCT-ACAAGTGCGCGGCTCAA 23
consensus_13860#3 ------------GAGGTCGTCTCCTCCGCTCCTTGCGCCANGGACGAGT-CGCGGCTCAA 47
consensus_13860#1 CAGTAAAATTTGGGAAAGCCTTTGGACTGAAAGTCACAGTTATTAGT-ACTAGTGAATCA 129
consensus_13860#4 ------------------------------------------------------------
consensus_13860#0 CAGTAAAATTTGGGAAAGCCTTTGGACTGAAAGTCACAGTTATTAGT-ACTAGTGAATCA 779
consensus_13860#2 CAGCGGA-GAGGCGGCGATCTCCCATCTGGCGAGCAGAGCAGGGGAG-GGGAAGGGATCT 81
consensus_13860#3 CAGCGGAAGAGGCGGCGATCTCCCATCTGGCGAGCANAGCANGGGAAAGGGAANGGATCT 107
consensus_13860#1 AAGAGAAAAGAAGCTATTGACCTTCTTGGTGCAGATAATTTCGTGGTGTCATCGGATGAA 189
consensus_13860#4 ------------------------------------------------------------
consensus_13860#0 AAGAGAAAAGAAGCTATTGACCTTCTTGGTGCAGATAATTTCGTGGTGTCATCGGATGAA 839
consensus_13860#2 TGTTAGAGTGGCATGGCTGCTGAATGTGGAAGTGGCAACTGTGATGCTTGGGCGGCGAGA 141
consensus_13860#3 TGTTANANTGGCATGGCTGCTGAATGTGGAAGTGGCAACTGTGATGCTTGGGCAGCGAGA 167
consensus_13860#1 AATCAGATGGAGACCTTGAAAAGCTCTCTGAACTTCATTATTGACACATCCTCCGGCGAT 249
consensus_13860#4 ------------------------------------------------------------
consensus_13860#0 AATCAGATGGAGACCTTGAAAAGCTCTCTGAACTTCATTATTGACACAGCCTCCGGCGAT 899
consensus_13860#2 GATCCTTCACGGATCCTCT---CCCCGTACAAGTTCAACCGCAGGGCTGTACAAAGTGAC 198
consensus_13860#3 GATCCTTCAAGGATCCTCT---CCCCGTACAAGTTCAACCGCAGGGCTGTNCAAAGTGAC 224
consensus_13860#1 CACCCATTCGATCCTTATCTCACGCTTCTGAAAGT-TGGTGGTGTAATGGCACTACTTAG 308
consensus_13860#4 ------------------------------------------------------------
consensus_13860#0 CACCCATTCGATCCTTATCTCACGCTTCTGAAAGT-TGGTGGTGTAATGGCACTACTTAG 958
consensus_13860#2 GATGT-TTCCTTGAGGATCACACACTGTGGTGTTTGTTATGCTGATGTTGCATGGACAAG 257
consensus_13860#3 CATGT-TTCCTTGAGGATCACACACTGTGGTGTTTGTTATGCTGATGTTGCATGGACAAN 283
consensus_13860#1 CTTCCCAAGTGAAATCAAAGTGCATCCTGCAAACCTTAATCTCGGTGGGCGGAGTTTATC 368
consensus_13860#4 ------------------------------------------------------------
consensus_13860#0 CTTCCCAAGTGAAATCAAAGTGCATCCTGCAAACCTTAATCTCGGTGGGCGGAGTTTATC 1018
consensus_13860#2 GAATATACTCAACAATTCGATGTACCCTTTAGTCCCTGGGTAAAATTATTAACTTTGTTA 317
consensus_13860#3 GAATATACTCNACAATTCNATGTNCCCTTTAGTCCCTGGG-------------------- 323
consensus_13860#1 TGGTAGTGTAACTGGAGGTACGAAGGACATCCAGGAGATGATAAACTTCTGTGCGGCAAA 428
consensus_13860#4 ------------------------------------------------------------
consensus_13860#0 TGGTAGTGTAACTGGAGGTACGAAGGACATCCAGGAGATGATAAACTTCTGTGCGGCAAA 1078
consensus_13860#2 CTTGAATTTTAACAAAAGTATGGAAAAGAATAAACTTCTGTTACAGACTATAAATTCATC 377
consensus_13860#3 ------------------------------------------------------------
consensus_13860#1 CAAAATCTACCCAGATATCGAGATGATCAAGATAGATTACATCAACGAGGCTCTTCAGAG 488
consensus_13860#4 ---------------------------------------------------------GAG 3
consensus_13860#0 CAAAATCTACCCAGATATCGAGATGATCAAGATAGATTACATCAACGAGGCTCTTCAGAG 1138
consensus_13860#2 CA---TTTACCTACTGTATTTGGTGTAAAGATAAAAGTTCATGAAATTGTGTCTAAATTT 434
consensus_13860#3 ---------------------------------------CATGAAATA------------ 332
consensus_13860#1 GCTTGTTGACCGGGATGTCAGATTTCGCTTTGTAATCGACATTGA-GAACTCGTTC-AAG 546
consensus_13860#4 GCTTGTTGACCGGGATGTCAGATTTCGCTTTGTAATCGACATTGA-GAACTCGTTCCAAG 62
consensus_13860#0 GCTTGTTGACCGGGATGTCAGATTTCGCTTTGTAATCGACATTGA-GAACTCGTTC-AAG 1196
consensus_13860#2 CAATATGAGTAGGCATGACATATCACGAGTTGTAACTGAGGTTGGTGCAGACGTCAAGAG 494
consensus_13860#3 -----------------------CANGAGTTGTAACTGANGTTGGTGCANACGTCCAGAN 369
* ****** ** *** * * *** *
consensus_13860#1 TA-GTATCTTGAT-ATCTTCAGTACACCATTAATGATAGAAGTGTATGCAATAATAATAA 604
consensus_13860#4 TAAGTATCTTGAT-ATCTTCAGTACACCATTAATGATAGAAGTGTATGCAATAATAATAA 121
consensus_13860#0 TA-GTATCTTGAT-ATCTTCAGTACACCATTAATGATAGAAGTGTATGCAATAATAATAA 1254
consensus_13860#2 CTTCAGAGTGGGTGACCATGTAGGTGTTGGCACATACGTGAATTCCTGCCGGGACTGTGA 554
consensus_13860#3 CTTCAAANTGGGTGACCNTGTNNGTGTTGGCNCATACNTNAATTCNTGCCGGGACTGTGA 429
* * * * * * * * * *** * * *
consensus_13860#1 GTTTAAATGTCCTACAAGATGATGAGACCATGAGACAGTTCCAGAACAAAATGTTCCATT 664
consensus_13860#4 GTTTAAATGTCCTACAAGATGATGNGACCATGAGACAGTTCCAGAACAAAATGTTCCATT 181
consensus_13860#0 GTTTAAATGTCCTACAAGATGATGAGACCATGAGACAGTTCCAGAACAAAATGTTCCATT 1314
consensus_13860#2 G---AACTGCAATAGCTCTCTATAGAACTACTG------CTCGCAACATG-TCTTCACTT 604
consensus_13860#3 N---AACTGCCATANCTCTCTANAAAACTACTG------CTCNCAACNTG-TCTTCNCTT 479
** ** ** * ** * * *** * *** **
consensus_13860#1 TTAAGAAGCAATTTGGTTCTGTTTTCAGTTATTTTCAGGAGTAAATTGTATTGGTGGTAC 724
consensus_13860#4 TTAAGAAAAAAAAAAAAA------------------------------------------ 199
consensus_13860#0 TTAAGAAGCAATTTGGTTCTGTTTTCAGTTATTTTCAGGAGTAAATTGTATTGGTGGTAC 1374
consensus_13860#2 T--CAATGGTGTT-GACACTGA-TGGGACTGTCACAAAGGG------------------- 641
consensus_13860#3 TTCCATGGGTGTTTGACNCNGAATGGGACTGTCCCNAAGGGGAGGATATTCC-------- 531
*
consensus_13860#1 ACAAACTTATTTGGTGGGTGTAATTTAATACATAAAACTTGTTTGTTGGGGTGTAAAAAA 784
consensus_13860#4 ------------------------------------------------------------
consensus_13860#0 ACAAACTTATTTGGTGGGTGTAATTTAATACATAAA-CTTGTTTGTTGGG-TGTAATTTA 1432
consensus_13860#2 ------------------------------------------------------------
consensus_13860#3 ------------------------------------------------------------
consensus_13860#1 AAAAAAAAAAAAA----------------------------------------------- 797
consensus_13860#4 ------------------------------------------------------------
consensus_13860#0 GTATATAAATTTGTTTGTTGGGTGTAGTTTAGTACATAAACTAAACTTGTGAAGTACTTA 1492
consensus_13860#2 ------------------------------------------------------------
consensus_13860#3 ------------------------------------------------------------
consensus_13860#1 -----------------------------------------
consensus_13860#4 -----------------------------------------
consensus_13860#0 TTTTGGTACATGAACTTATCTAATTCGTATGAATCCCAATC 1533
consensus_13860#2 -----------------------------------------
consensus_13860#3 -----------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||