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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13865#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 601 fasta sequence
[TTTTTTTTTTTTTTTAGGCAGGCAAAACACCGTC-AGATATATATCTCTCTGATGATATTAGTACAAACAAGAAGTGAAAATCCCTCTTTGTTCTAATAATTTCACTGCATAAATCTCATAGTATATATGGTACAAAATATATATGGACTAGCATTTAAAGAGGGAGATCAAGTCCCTTGCCGACTTCC--ACACCAATCATCTGAAGAATGCCCTTGTTCAGCACCAGCTCCACGATGAAGGTGCCAATGAGGCCAATCATGCAGGCCCTGGAGTTCCATATCTCTGCAGTCCTGGTGAAACCCAGGAAGGGCTCACTCAGCTTTGGCTGCTTCCTCGGCACCTCAA-CCCCTGCAGGCAGCTTTGCAGCTCTAATTTTGACAGATCTGGTTCTTGGCAGTTCCAGGGATAGACCAAGCTTCCTCAGAGGCTTGTGGCTCAAGATCGACTGATGTGCCAAGAAGGAGGGGGCAGCAAGTGTAGCTGTCGCCGCCATTGGTTCTGGCCTTGTTCTTGCTGTGCCCTGCTAGCCTAGCAAGGTTTTCTCTTGGGCCAATGATTTTCAGCTTCCTCTCTCCTATCTTCCCCCCTTGTCTCGTCCTCT]
[+] EMBL CA762718 [TTTTTTTTTTTTTTTAGGCAGGCAAAACACCGTC AGATATATATCTCTCTGATGATATTAGTACAAACAAGAAGTGAAAATCCCTCTTTGTTCTAATAATTTCACTGCATAAATCTCATAGTATATATGGTACAAAATATATATGGACTAGCATTTAAAGAGGGAGATCAAGTCCCTTGCCGACTTCC ACACCAATCATCTGAAGAATGCCCTTGTTCAGCACCAGCTCCACGATGAAGGTGCCAATGAGGCCAATCATGCAGGCCCTGGAGTTCCATATCTCTGCAGTCCTGGTGAAACCCAGGAAGGGCTCACTCAGCTTTGGCTGCTTCCTCGGCACCTCAA CCCCTGCAGGCAGCTTTGCAGCTCTAATTTTGACAGATCTGGTTCTTGGCAGTTCCAGGGATAGACCAAGCTTCCTCAGAGGCTTGTGGCTCAAGATCGACTGATGTGCCAAGAAGGAGGGGGCAGCAAGTGTAGCTGTCGCCGCCATTGGTTCTGGCCTTGTTCTTGCTGTGCCCTGCTAGCCTAGCAAGGTTTTCTCTTGGGCCAATGATTTTCAGCTTCCTCTCTCCTATCTTCCCCCCTTGTCTCGTCCTCT]
[+] EMBL CF312193 [ TTTTTTTTAGGCAGGCAAAACACCGTC AGATATATATCTCTCTGATGATATTAGTACAAACAAGAAGTGAAAATCCCTCTTTGTTCTAATAATTTCACTGCATAAATCTCATAGTATATATGGTACAAAATATATATG ]
[-] EMBL CF312192 [ TTTTTTTAGGCAGGCAAAACACCGTC AGATATATATCTCTCTGATGATATTAGTACAAACAAGAAGTGAAAATCCCTCTTTGTTCTAATAATTTCACTGCATAAATCTCATAGTATATATGGTACAAAATATATATGG ]
[-] EMBL BE229909 [ AGGCAAAACACCGTCAAGATATATATCTCTCTGATGATATTAGTACAAACAAGAAGTGAAAATCCCTCTTTGTTCTAATAATTTCACTGCATAAATCTCATAGTATATATGGTACAAAATATATATGGACTAGCATTTAAAGAGGGAGATCAAGTCCCTTGCCGACTTCC ACACCAATCATCTGAAGAATGCCCTTGTTCAGCACCAGCTCCACGATGAAGGTGCCAATGAGGCCAATCATGCAGGCCCTGGAGTTCCATATCTCTGCAGTCCTGGTGAAACCCAGGAAGGGCTCACTCAGCTTTGGCTGCTTCCTCGGCACCTCAA CCCCTGCAGGCAGCTTTGCAGCTCTAATTTTGACAGATCTGGTTCTTGGCAGTTCCAGGGATAGACCAAGCTTCCTCAGAGGCTTGTGGCTCAAGATCGACTGATGTGCCAAGAAGGAGGGGGCAGCAAGTGTAGCTGTCGCCGCCATTGGTTCTGGCCTTGTTCTTGCTGTGCCCTGCTAGCCTAGCAAGGTTT ]
[-] EMBL AK059562 [ AACACCGTC AGATATATATCTCTCTGATGATATTAGTACAAACAAGAAGTGAAAATCCCTCTTTGTTCTAATAATTTCACTGCATAAATCTCATAGTATATATGGTACAAAATATATATGGACTAGCATTTAAAGAGGGAGATCAAGTCCCTTGCCGACTTCC ACACCAATCATCTGAAGAATGCCCTTGTTCAGCACCAGCTCCACGATGAAGGTGCCAATGAGGCCAATCATGCAGGCCCTGGAGTTCCATATCTCTGCAGTCCTGGTGAAACCCAGGAAGGGCTCACTCAGCTTTGGCTGCTTCCTCGGCACCTCAA CCCCTGCAGGCAGCTTTGCAGCTCTAATTTTGACAGATCTGGTTCTTGGCAGTTCCAGGGATAGACCAAGCTTCCTCAGAGGCTTGTGGCTCAAGATCGACTGATGTGCCAAGAAGGAGGGGGCAGCAAGTGTAGCTGTCGCCGCCATTGGTTCTGGCCTTGTTCTTGCTGTGCCCTGCTAGCCTAGCAAGGTTTTCTCTTGGGCCAATGAT ]
[-] EMBL CA766945 [ AACACCGTC AGATATATATCTCTCTGATGATATTAGTACAAACAAGAAGTG AAATCCCTCTTTGTTCTAATAATCACACTGCATAAATCTCATAGTATATATGGTACAAAATATATATGGACTAGCATTTAAAGAGGGAGATCAAGTCCCTTGCCGACTTCC ACACCAATCATCTGAAGAATGCCCTTGTTCAGCACCAGCTCCACGATGAAGGTGCCAATGAGGCCAATCATGCAGGCCCTGGAGTTCCATATCTCTGCAGTCCTGGCGAAACCCAGGAAGGGCTCACTCAGCTTTGGCTGCTTCCTCGGCACCTCAA CCCCTGCAGGCAGCTTTGCAGCTCTAATTTTGACAGATCTGGTTCTTGGCAGTTCCAGGGATAGACCAAGCTTCCTCAGAGGCTTGTGGCTCAAGATCGACTGATGTGCCAAGAAGGAGGGGGCAGCAAGTGTAGCTGTCGCCGCCATTGGTTCTGGCCTTGTTCTTGCTGTGCCCTGCTAGCCTAGCAAGGTTTTCTCTTGGGCCAAT ]
[-] EMBL CF301833 [ ATGATATTAGTACAAACAAGAAGTGAAAATCCCTCTTTGTTCTAATAATTTCACTGCATAAATCTCATAGTATATATGGTACAAAATATATATGGACTAGCATTTAAAGAGGGAGATCAAGTCCCTTGCCGACTTCCCNAC CCAATCATCCGAAGAATGCCCTTGTTCAGCACCAGCTCCACGATGAAGGTGCCAATGAGGCCAATCATGCAGGCCCTGGAGTTCCATATCTCTGCAGTCCTGGTGAAACCCAGGAAGGGCTCACTCAGCTTTGGCTGCTTCCTCGGCACCTCAACCCCCTGCAGGCAGCTTTGCAGCTCTAATTTTGACAGATCTGGTTCTTGGCAGTTCCAGGGATAGACCAAGCTTCCTCAGAGGCTTG GGCTCAAGATCGACTGATGTGCCAAGAAGGAGGGGGCAGCAAGTGTAGCTGTCGCCGCCATTGGTTCTGGCCTTGTTCTT ]
[-] EMBL BE229957 [ AAATCCCTCTTTGTTCTAATAATTTCACTGCATAAATCTCATAGTATATATGGTACAAAATATATATGGACTAGCATTTAAAGAGGGAGATCAAGTCCCTTGCCGACTTCC ACACCAATCATCTGAAGAATGCCCTTGTTCAGCACCAGCTCCACGATGAAGGTGCCAATGAGGCCAATCATGCAGGCCCTGGAGTTCCATATCTCTGCAGTCCTGGTGAAACCCAGGAAGGGCTCACTCAGCTTTGGCTGCTTCCTCGGCACCTCAA CCCCTGCAGGCAGCTTTGCAGCTCTAATTTTGACAGATCTGGTTCTTGGCAGTTCCAGGGATAGACCAAGCTTCCTCAGAGGCTTGTGGCTCAAGATCGACTGATGTGCCAAGAAGGAGGGGGCAGCAAGTGTAGCTGTCGCCGCCATTGGTTCTGGCCTTGTTCTTGCTGTGCCCTGCTAGCCTAGCAAGGTTT ]
consensusID : consensus_13865#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 565 fasta sequence
[CACTGCATAAATCTCATAGTATATATGGTACAAAATATATATGGACTAGCATTTAAAGAGGGAGATCAAGTCCCTTGCCGACTTCCACACCAATCATCTGAAGAATGCCCTTGTTCAGCACCAGCTCCACGATGAAGGTGCCAATGAGGCCAATCATGCAGGCCCTGGAGTTCCATATCTCTGCAGTCCTGGTGAAACCCAGGAAGGGCTCACTCAGCTTTGGCTGCTTCCTCGGCACCTCAACCCCTGCAGGCAGCTTTGCAGCTCTAATTTTGACAGATCTGGTTCTTGGCAGTTCCAGGGATAGACCAAGCTTCCTCAGAGGCTTGTGGCTCAAGATCGACTGATGTGCCAAGAAGGAGGGGGCAGCAAGTGTAGCTGTCGCCGCCATTGGTTCTGGCCTTGTTCTTGCTGTGCCCTGCTAGCCTAGCAAGGTTTTCTCTTGGGCCAATGATTTTCAGCTTCCTCTCTCCTATCTTCTTTGCAAGACGAGATGGGCAATCGTGCGTTGGTAGTCCAGTCGTTGGAGAGGCCACCATCGCTCATACGTGGCCACACTGGAGAC]
[-] EMBL CB685346 [CACTGCATAAATCTCATAGTATATATGGTACAAAATATATATGGACTAGCATTTAAAGAGGGAGATCAAGTCCCTTGCCGACTTCCACACCAATCATCTGAAGAATGCCCTTGTTCAGCACCAGCTCCACGATGAAGGTGCCAATGAGGCCAATCATGCAGGCCCTGGAGTTCCATATCTCTGCAGTCCTGGTGAAACCCAGGAAGGGCTCACTCAGCTTTGGCTGCTTCCTCGGCACCTCAACCCCTGCAGGCAGCTTTGCAGCTCTAATTTTGACAGATCTGGTTCTTGGCAGTTCCAGGGATAGACCAAGCTTCCTCAGAGGCTTGTGGCTCAAGATCGACTGATGTGCCAAGAAGGAGGGGGCAGCAAGTGTAGCTGTCGCCGCCATTGGTTCTGGCCTTGTTCTTGCTGTGCCCTGCTAGCCTAGCAAGGTTTTCTCTTGGGCCAATGATTTTCAGCTTCCTCTCTCCTATCTTCTTTGCAAGACGAGATGGGCAATCGTGCGTTGGTAGTCCAGTCGTTGGAGAGGCCACCGGCGCT ]
[-] EMBL BE229906 [ gATAGTATATATGGTACAAAATATATATGGACTAGCATTTAAAGAGGGAGATCAAGTCCCTTGCCGACTTCCACACCAATCATCTGAAGAATGCCCTTGTTCAGCACCAGCTCCACGATGAAGGTGCCAATGAGGCCAATCATGCAGGCCCTGGAGTTCCATATCTCTGCAGTCCTGGTGAAACCCAGGAAGGGCTCACTCAGCTTTGGCTGCTTCCTCGGCACCTCAACCCCTGCAGGCAGCTTTGCAGCTCTAATTTTGACAGATCTGGTTCTTGGCAGTTCCAGGGATAGACCAAGCTTCCTCAGAGGCTTGTGGCTCAAGATCGACTGATGTGCCAAGAAGGAGGGGGCAGCAAGTGTAGCTGTCGCCGCCATTGGTTCTGGCCTTGTTCTTGCTGTGCCCTGCTAGCCTAGCAAGGTTT ]
[+] EMBL CB685347 [ ACTAGCATTTAAAGAGGGAGATCCAGTCCCTTGCCGACTTCCACACCAATCATCTGAAAAATGCCCTTGTTCAGCACCACCTCCACGATGAAGGTGCCAATGAGGCCAATCATGCAGGCCCTGTAGTTCCATATCTCTGCATTCCTGGTGAAACCCAGGAAGGGCTCACTCAGCTTTGGCTGCTTCCTCGGCACCTCAACCCCTGCAGGCAGCTTTGCATCTCTAATTTTGACAGATCTGGTTCTTGGCAGTTCCAGGGATAGACCAAGCTTCCTCAGAGGCTTGTGGCTCAAGATCGACTGATGTGCCAAGAAGGAGGGGGCAGCAAGTGTAGCTGTCGCCCCCATTGGTTCTGGCCTTGGTCTTGCTGGGCCCTGCTAGCCTAGCAAGGTTTTCTCTTGGGCCAATGATTTTCAGCTTCCTCTCTCCTATCTTCTTTGCAAGACGATATGGGCAATCGTGCGTTGGTAGTCCAGTCGTTGGAGAGGCCACCATCGCTCATACGTG ]
[-] EMBL CB001036 [ ATCATCTGAAGAATGCCCTTGTTCAGCACCAGCTCCACGATGAAGGTGCCAATGAGGCCAATCATGCAGGCCCTGGAGTTCCATATCTCTGCAGTCGTGGTGAAACCCAGGAAGGGCTCACTCAGCTTTGGCTGCTTCCTAGGCACCTCAACCCCTGCAGGCAGCTATGCAGCTGTAATTTTGACAGATCTGGTTCTTGGCAGTTCCAGGGATAGACCAAGCTTCGTCAGAGGCTCGTGGCTCAAGATCGACAGATGTTCCAAGAAGGAGGGGGCAGCAAGTGTAGCTGTCGCCGCCATTGGTTGTGACATCGTTCTTGCTGTGCCCTGCTAGCCTAGCAAGGTTTTCTCTAGGGCCAATGATAGTCAGCTTCCTCTATCATATATTGTTAGCAAGACGAGATGGGCAATCGTGCGTAGGTAGTCCAGTCGTAGGAGAGGCCACCATCGTTCAGACGTGGCCACACTGGAGAC]
[-] EMBL BE230005 [ CCCCTGCAGGCAGCTTTGCAGCTCTAATTTTGACAGATCTGGTTCTTGGCAGTTCCAGGGATAGACCAAGCTTCCTCAGAGGCTTGTGGCTCAAGATCGACTGATGTGCCAAGAAGGAGGGGGCAGCAAGTGTAACTGTCGCCGCCATTGGTTATGGCCTTGTTCTTGCTGTGTCCTGCTAGCCTAGCAAGGTTT ]
consensusID : consensus_13865#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 119 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGATATATATCTCTCTGATGATATTAGTCCCAACAAGAAGGGAAAATCCCTCTTTGGTCTAATAATTTCACTGCATAAATCTCAT]
[+] EMBL CF301834 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGATATATATCTCTCTGATGATATTAGTCCCAACAAGAAGGGAAAATCCCTCTTTGGTCTAATAATTTCACTGCATAAATCTCAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13865#0 TTTTTTTTTTTTTTTAGGCAGGCAAAACACCGTCAGATATATATCTCTCTGATGATATTA 60
consensus_13865#1 ------------------------------------------------------------
consensus_13865#2 ------------------------------------------------------------
consensus_13865#0 GTACAAACAAGAAGTGAAAATCCCTCTTTGTTCTAATAATTTCACTGCATAAATCTCATA 120
consensus_13865#1 ------------------------------------------CACTGCATAAATCTCATA 18
consensus_13865#2 ------------------------------------------------------------
consensus_13865#0 GTATATATGGTACAAAATATATATGGACTAGCATTTAAAGAGGGAGATCAAGTCCCTTGC 180
consensus_13865#1 GTATATATGGTACAAAATATATATGGACTAGCATTTAAAGAGGGAGATCAAGTCCCTTGC 78
consensus_13865#2 ------------------------------------------------------------
consensus_13865#0 CGACTTCCACACCAATCATCTGAAGAATGCCCTTGTTCAGCACCAGCTCCACGATGAAGG 240
consensus_13865#1 CGACTTCCACACCAATCATCTGAAGAATGCCCTTGTTCAGCACCAGCTCCACGATGAAGG 138
consensus_13865#2 ------------------------------------------------------------
consensus_13865#0 TGCCAATGAGGCCAATCATGCAGGCCCTGGAGTTCCATATCTCTGCAGTCCTGGTGAAAC 300
consensus_13865#1 TGCCAATGAGGCCAATCATGCAGGCCCTGGAGTTCCATATCTCTGCAGTCCTGGTGAAAC 198
consensus_13865#2 ------------------------------------------------------------
consensus_13865#0 CCAGGAAGGGCTCACTCAGCTTTGGCTGCTTCCTCGGCACCTCAACCCCTGCAGGCAGCT 360
consensus_13865#1 CCAGGAAGGGCTCACTCAGCTTTGGCTGCTTCCTCGGCACCTCAACCCCTGCAGGCAGCT 258
consensus_13865#2 ------------------------------------------------------------
consensus_13865#0 TTGCAGCTCTAATTTTGACAGATCTGGTTCTTGGCAGTTCCAGGGATAGACCAAGCTTCC 420
consensus_13865#1 TTGCAGCTCTAATTTTGACAGATCTGGTTCTTGGCAGTTCCAGGGATAGACCAAGCTTCC 318
consensus_13865#2 ------------------------------------------------------------
consensus_13865#0 TCAGAGGCTTGTGGCTCAAGATCGACTGATGTGCCAAGAAGGAGGGGGCAGCAAGTGTAG 480
consensus_13865#1 TCAGAGGCTTGTGGCTCAAGATCGACTGATGTGCCAAGAAGGAGGGGGCAGCAAGTGTAG 378
consensus_13865#2 ------------------------------------------------------------
consensus_13865#0 CTGTCGCCGCCATTGGTTCTGGCCTTGTTCTTGCTGTGCCCTGCTAGCCTAGCAAGGTTT 540
consensus_13865#1 CTGTCGCCGCCATTGGTTCTGGCCTTGTTCTTGCTGTGCCCTGCTAGCCTAGCAAGGTTT 438
consensus_13865#2 ---------------------------------------TTTTTTTTTTTTTTTTTTTTT 21
* * * ***
consensus_13865#0 TCTCTTGGGCCAATGATTTTCAGCTTCCTCTCTCCTATCTTCCCCCCTTGTCTCGTCCTC 600
consensus_13865#1 TCTCTTGGGCCAATGATTTTCAGCTTCCTCTCTCCTATCTTCTTTGCAAGACGAGATGGG 498
consensus_13865#2 TTTTTTTTTTTTTTGATATATATCTCTCTGATGATATTAGTCCCAACAAGAAGGGAAAAT 81
* * ** **** * * ** ** * ** * * *
consensus_13865#0 T----------------------------------------------------------- 601
consensus_13865#1 CAATCGTGCGTTGGTAGTCCAGTCGTTGGAGAGGCCACCATCGCTCATACGTGGCCACAC 558
consensus_13865#2 CCCTCTTTGGTC--TAATAATTTCACTGCATAAATC-TCAT------------------- 119
consensus_13865#0 -------
consensus_13865#1 TGGAGAC 565
consensus_13865#2 -------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||