cluster # 13866

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Oryza sativa
cluster # 13866 cluster # 13866 Sequences # 14 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13866#0 length = 941 sequences # 13

consensus_13866#1 length = 415 sequences # 1

consensusID : consensus_13866#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 13
consensus length = 941
fasta sequence

                              [TCGCCACGCTTCCACTCTGCTCGTCCTCCTCCTCCTCCCCTTCTCCGCAGCAACAGCCCAAACGGGCGCGGGCGCCAATGGAGACCGCGGCGATGCCAAGATCTCCGTGCTGCTCCCTCCCCTCCGCCCGTGTCCTCCCCTCCCGCCTTCCCCTCCTGCCCCGCCCCGCGCCGGCGGCTCTCTCGGCCCCGGCCGCCAGGCCGGTCGTGGCCCGGTGCGCCGCCGCCGCCGGCCACGGGGGCGAGGGCGAGATGCCCATAGAGAAGAGGTTTCCTCCCTTCCCGGCTGTGATGGACATCA-ACCAAATCCGCGATAT-CTTGCCGCACAGGTTTCCATTCCTTCTGGTTGATAGAGTGATTGATTACAAGCCAGGGGAATATGCTGTTGGGATCAAGAATGTTACAATAAATGATAACTTCTTCCCAGGGCATTTTCCGGAGAGACCTATAATGCCTGGTGTTCTTATGGTGGAGGCAATGGCCCAGGTTGGAGGTCTGGTTATGTTGCAACCTGAAGTTGGTGGATCTCGAGAGAACTTCTTTTTTGCAGGGATTGATAAAGTGAGATTTCGTAAGCCTGTGATTGCTGGAGACACCTTGATTATAAGGATGACTCTGATCAAGTTGCAGAAGAGGTTTGGAATCGCAAAGATGGAAGGAAAAGCATATGTTGGAGGCGACCTAGTATGTGAGGGAGAGTTCTTGATGGCAACCGGATCTGAATAAGGTACAAGGCAATGGTGCAGCTTCATTGCCTACCACAATCAAGTTTTGGACCATGTTTGTAACAGTGTACTGTAGCTCCTATAGTCTAGTCTCGATGGTGATGCTTAATGCAGGACTGCTGAGCTATAAAATGCTTTTTATGCCGATGATGGTAAAATTGAATCAACCAGATATGTATATGGACGACGTCTTTGCTTTTTGAAAATAATCCTGCAA]

[+] EMBL AK069677             [TCGCCACGCTTCCACTCTGCTCGTCCTCCTCCTCCTCCCCTTCTCCGCAGCAACAGCCCAAACGGGCGCGGGCGCCAATGGAGACCGCGGCGATGCCAAGATCTCCGTGCTGCTCCCTCCCCTCCGCCCGTGTCCTCCCCTCCCGCCTTCCCCTCCTGCCCCGCCCCGCGCCGGCGGCTCTCTCGGCCCCGGCCGCCAGGCCGGTCGTGGCCCGGTGCGCCGCCGCCGCCGGCCACGGGGGCGAGGGCGAGATGCCCATAGAGAAGAGGTTTCCTCCCTTCCCGGCTGTGATGGACATCA ACCAAATCCGCGATAT CTTGCCGCACAGGTTTCCATTCCTTCTGGTTGATAGAGTGATTGATTACAAGCCAGGGGAATATGCTGTTGGGATCAAGAATGTTACAATAAATGATAACTTCTTCCCAGGGCATTTTCCGGAGAGACCTATAATGCCTGGTGTTCTTATGGTGGAGGCAATGGCCCAGGTTGGAGGTCTGGTTATGTTGCAACCTGAAGTTGGTGGATCTCGAGAGAACTTCTTTTTTGCAGGGATTGATAAAGTGAGATTTCGTAAGCCTGTGATTGCTGGAGACACCTTGATTATAAGGATGACTCTGATCAAGTTGCAGAAGAGGTTTGGAATCGCAAAGATGGAAGGAAAAGCATATGTTGGAGGCGACCTAGTATGTGAGGGAGAGTTCTTGATGGCAACCGGATCTGAATAAGGTACAAGGCAATGGTGCAGCTTCATTGCCTACCACAATCAAGTTTTGGACCATGTTTGTAACAGTGTACTGTAGCTCCTATAGTCTAGTCTCGATGGTGATGCTTAATGCAGGACTGCTGAGCTATAAAATGCTTTTTATGCCGATGATGGTAAAATTGAATCAACCAGATATGTATATGGACGACGTCTTTGCTTTTTGAAAATAATCCTGCAA]
[+] EMBL CF339703             [TCGCCACGCTTCCACTCTGCTCGTCCTCCTCCTCCTCCCCTTCTCCGCAGCAACAGCCCAAACGGGCGCGGGCGCCAATGGAGACCGCGGCGATGCCAAGATCTCCGTGCTGCTCCCTCCCCTCCGCCCGTGTCCTCCCCTCCCGCCTTCCCCTCCTGCCCCGCCCCGCGCCGGCGGCTCTCTCGGCCCCGGCCGCCAGGCCGGTCGTGGCCCGGTGCGCCGCCGCCGCCGGCCACGGGGGCGAGGGCGAGATGCCCATAGAGAAGAGGTACCCTCCCTTCCCGGCTGTGATGGACATCA ACCAAATCCGCGATAT CTTGCCGCACAGGTTTCCATTCCTTCTGGTTGATAGAGTGATTGATTACAAGCCAGGGGAATATGCTGTTGGGATCAAGAATGTTACAATAAATGATAACTTCTTCCCAGGGCATTTTCCGGAGAGACCTATAATGCCTGGTGTTCTTATGGTGGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CF339262             [TCGCCACGCTTCCACTCTGCTCGTCCTCCTCCTCCTCCCCTTCTCCGCAGCAACAGCCCAAACGGGCGCGGGCGCCAATGGAGACCGCGGCGATGCCAAGATCTCCGTGCTGCTCCCTCCCCTCCGCCCGTGTCCTCCCCTCCCGCCTTCCCCTCCTGCCCCGCCCCGCGCCGGCGGCTCTCTCGGCCCCGGCCGCCAGGCCGGTCGTGGCCCGGTGCGCCGCCGCCGCCGGCCACGGGGGCGAGGGCGAGATGCCCATAGAGAAGAGGTTTCCTCCCTTCCCGGCTGTGATGGACATCA ACCAAATCCGCGATAT CTTGCCGCACAGGTTTCCATTCCTTCTGGTTGATAGAGTGATTGATTACAAGCCAGGGGAATATGCTGTTGGGATCAAGAATGTTACAATAAATGATAACTTCTTCCCAGGGCATTTTCCGGAGAGACCTATAATGCCTGGTGTTCTTATGGTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CF338625             [TCGCCACGCTTCCACTCTGCTCGTCCTCCTCCTCCTCCCCTTCTCCGCAGCAACAGCCCAAACGGGCGCGGGCGCCAATGGAGACCGCGGCGATGCCAAGATCTCCGTGCTGCTCCCTCCCCTCCGCCCGTGTCCTCCCCTCCCGCCTTCCCCTCCTGCCCCGCCCCGCGCCGGCGGCTCTCTCGGCCCCGGCCGCCAGGCCGGTCGTGGCCCGGTGCGCCGCCGCCGCCGGCCACGGGGGCGAGGGCGAGATGCCCATAGAGAAGAGGTTTCCTCCCTTCCCGGCTGTGATGGACATCA ACCAAATCCGCGATAT CTTGCCGCACAGGTTTCCATTCCTTCTGGTTGATAGAGTGATTGATTACAAGCCAGGGGAATATGCTGTTGGGATCAAGAATGTTACAATAAATGATAACTTCTTCCCAGGGCATTTTCCGGAGAGACCTATAATGCCTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CF338301             [TCGCCACGCTTCCACTCTGCTCGTCCTCCTCCTCCTCCCCTTCTCCGCAGCAACAGCCCAAACGGGCGCGGGCGCCAATGGAGACCGCGGCGATGCCAAGATCTCCGTGCTGCTCCCTCCCCTCCGCCCGTGTCCTCCCCTCCCGCCTTCCCCTCCTGCCCCGCCCCGCGCCGGCGGCTCTCTCGGCCCCGGCCGCCAGGCCGGTCGTGGCCCGGTGCGCCGCCGCCGCCGGCCACGGGGGCGAGGGCGAGATGCCCATAAAGAAGAGGTTTCCTCCCTTCCCGGCTGTGATGGACATCA ACCAAATCCGCGATAT CTTGCCGCACAGGTTACCATTCCTTCTGGGTGATAGAGTGATTGATTACAAGCCAGGGGAATATGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CF338305             [TCGCCACGCTTCCACTCTGCTCGTCCTCCTCCTCCTCCCCTTCTCCGCAGCAACAGCCCAAACGGGCGCGGGCGCCAATGGAGACCGCGGCGATGCCAAGATCTCCGTGCTGCTCCCTCCCCTCCGCCCGTGTCCTCCCCTCCCGCCTTCCCCTCCTGCCCCGCCCCGCGCCGGCGGCTCTCTCGGCCCCGGCCGCCATGCCGGTCGTGGCCCGGTGCGCCGCCGCCGCCGGCCACGGGGGCGAGGGCGAGATGCCCATAGAGAAGAGGTTTCCTCCCTTCCCGGCTGTGATGGACATGAGACCAAATCCGCGATATCCTTGCCGCACAGGTTTCCATTCCTTCTGGTTGATAGAGTGATTGATTACAAGCCAt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CF339085             [TCGCCACGCTTCCACTCTGCTCGTCCTCCTCCTCCTCCCCTTCTCCGCAGCAACAGCCCAAACGGGCGCGGGCGCCAATGGAGACCGCGGCGATGCCAAGATCTCCGTGCTGCTCCCTCCCCTCCGCCCGTGTCCTCCCCTCCCGCCTTCCCCTCCTGCCCCGCCCCGCGCCGGCGGCTCTCTCGGCCCCGGCCGCCAGGCCGGTCGTGGCCCGGTGCGCCGCCGCCGCCGGCCACGGGGGCGAGGGCGAGATGCCCATAGAGAAGAGGTTACCTCCCTTCCCGGCTGTGATGGAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CF339717             [TCGCCACGCTTCCACTCTGCTCGTCCTCCTCCTCCTCCCCTTCTCCGCAGCAACAGCCCAAACGGGCGCGGGCGCCAATGGAGACCGCGGCGATGCCAAGATCTCCGTGCTGCTCCCTCCCCTCCGCCCGTGTCCTCCCCTCCCGCCTTCCCCTCCTGCCCCGCCCCGCGCCGGCGGCTCTCTCGGCCCCGGCCGCCAGGCCGGTCGTGGCCCGGTGCGCCGCCGACGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CF340527             [TCGCCACGCTTCCACTCTGCTCGTCCTCCTCCTCCTCCCCTTCTCCGCAGCAACAGCCCAAACGGGCGCGGGCGCCAATGGAGACCGCGGCGATGCCAAGATCTCCGTGCTGCTCCCTCCCCTCCGCCCGTGTNCTCCCCTCCCGCCTTCCCCTCCTGCCCCGCCCCGCGCCGGCGGCTCTCTCGGTCCCGGCCGTCAGGCCCGCCGTGGCCCGGTGCGCCGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CF340533             [TCGCCACGCTTCCACTCTGCTCGTCCTCCTCCTCCTCCCCTTCTCCGCAGCAACAGCCCAAACGGGCGCGGGCGCCAATGGAGACCGCGGCGATGCCAAGATCTCCGTGCTGCTCCCTCCCCTCCGCCCGTGTNCTCCCCTCCCGCCTTCCCCTTCTGCCCCGCCCCGCGCCGGCGGCTCTCTCGGTCCCGGCCGCCAGGCCGGTCGTGGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CF339210             [TCGCCACGCTTCCACTCTGCTCGTCCTCCTCCTCCTCCCCTTCTCCGCAGCAACAGCCCAAACGGGCGCGGGCGCCAATGGAGACCGCGGCGATGCCAAGATCTCCGTGCTGCTCCCTCCCCTCCGCCCGTGTCCTCCCCTCCCGCCTTCCCCTCCTGCCCCGCCCCGCGCCGGCGGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CF339623             [TCGCCACGCTTCCACTCTGCTCGTCCTCCTCCTCCTCCCCTTCTCCGCAGCAACAGCCCAAACGGGCGCGGGCGCCAATGGAGACCGCGGCGATGCCAAGATCTCCGTGCTGCTCCCTCCCCTCCGCCCGTGTCCTCCCCTCCCGCCTTCCCCTCCTGCCCCGCCCCGCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CF338713             [             ACTCTGCTCGTCCTCCTCCTCCTTCCCTTCTCCGCAGCAACAGCCCAAACGGGCGCGGGCGCCAATGGAGACCGCGGCGATGCCAAGATCTCCGTGCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]




>consensus_13866#0
TCGCCACGCTTCCACTCTGCTCGTCCTCCTCCTCCTCCCCTTCTCCGCAGCAACAGCCCA
AACGGGCGCGGGCGCCAATGGAGACCGCGGCGATGCCAAGATCTCCGTGCTGCTCCCTCC
CCTCCGCCCGTGTCCTCCCCTCCCGCCTTCCCCTCCTGCCCCGCCCCGCGCCGGCGGCTC
TCTCGGCCCCGGCCGCCAGGCCGGTCGTGGCCCGGTGCGCCGCCGCCGCCGGCCACGGGG
GCGAGGGCGAGATGCCCATAGAGAAGAGGTTTCCTCCCTTCCCGGCTGTGATGGACATCA
ACCAAATCCGCGATATCTTGCCGCACAGGTTTCCATTCCTTCTGGTTGATAGAGTGATTG
ATTACAAGCCAGGGGAATATGCTGTTGGGATCAAGAATGTTACAATAAATGATAACTTCT
TCCCAGGGCATTTTCCGGAGAGACCTATAATGCCTGGTGTTCTTATGGTGGAGGCAATGG
CCCAGGTTGGAGGTCTGGTTATGTTGCAACCTGAAGTTGGTGGATCTCGAGAGAACTTCT
TTTTTGCAGGGATTGATAAAGTGAGATTTCGTAAGCCTGTGATTGCTGGAGACACCTTGA
TTATAAGGATGACTCTGATCAAGTTGCAGAAGAGGTTTGGAATCGCAAAGATGGAAGGAA
AAGCATATGTTGGAGGCGACCTAGTATGTGAGGGAGAGTTCTTGATGGCAACCGGATCTG
AATAAGGTACAAGGCAATGGTGCAGCTTCATTGCCTACCACAATCAAGTTTTGGACCATG
TTTGTAACAGTGTACTGTAGCTCCTATAGTCTAGTCTCGATGGTGATGCTTAATGCAGGA
CTGCTGAGCTATAAAATGCTTTTTATGCCGATGATGGTAAAATTGAATCAACCAGATATG
TATATGGACGACGTCTTTGCTTTTTGAAAATAATCCTGCAA

consensusID : consensus_13866#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 415
fasta sequence

                              [TCCCGCCTTCCCCTCCTGCCCCGCCCCGCGCCGGCGGNTCTCTCGGCCCCGGCCGCCAGGCCGGTCGTGGCCCGGTGCGCCGCCGCCGCCGGCCACGGGGGCGAGGGCGAGATGCCCATAGAGAAGAGGTTTCCTCCCTTCCCGGCTGTGATGGACATCAACCAAATCCGCGATATCTTGCCGCACAGGTTTCCATTCCTTCTGGTTGATAGAGTGATTGATTACAAGCCAGGGGAATATGCTGTTGGGATCAAGAATGTTACAATAAATGATAACTTCTTCCCAGGGCATTTTCCGGAGAGACCTATAATGCCTGGTGTTCTTATGGTGGAGGCAATGGTGGATCTCGAGAGAACTTCTTTTTTGCAGGGATTGATAAAGTGAGATTTCGTAAGCCTGTGATTGCTGGAGACAC]

[+] EMBL AU172784             [TCCCGCCTTCCCCTCCTGCCCCGCCCCGCGCCGGCGGNTCTCTCGGCCCCGGCCGCCAGGCCGGTCGTGGCCCGGTGCGCCGCCGCCGCCGGCCACGGGGGCGAGGGCGAGATGCCCATAGAGAAGAGGTTTCCTCCCTTCCCGGCTGTGATGGACATCAACCAAATCCGCGATATCTTGCCGCACAGGTTTCCATTCCTTCTGGTTGATAGAGTGATTGATTACAAGCCAGGGGAATATGCTGTTGGGATCAAGAATGTTACAATAAATGATAACTTCTTCCCAGGGCATTTTCCGGAGAGACCTATAATGCCTGGTGTTCTTATGGTGGAGGCAATGGTGGATCTCGAGAGAACTTCTTTTTTGCAGGGATTGATAAAGTGAGATTTCGTAAGCCTGTGATTGCTGGAGACAC]




>consensus_13866#1
TCCCGCCTTCCCCTCCTGCCCCGCCCCGCGCCGGCGGNTCTCTCGGCCCCGGCCGCCAGG
CCGGTCGTGGCCCGGTGCGCCGCCGCCGCCGGCCACGGGGGCGAGGGCGAGATGCCCATA
GAGAAGAGGTTTCCTCCCTTCCCGGCTGTGATGGACATCAACCAAATCCGCGATATCTTG
CCGCACAGGTTTCCATTCCTTCTGGTTGATAGAGTGATTGATTACAAGCCAGGGGAATAT
GCTGTTGGGATCAAGAATGTTACAATAAATGATAACTTCTTCCCAGGGCATTTTCCGGAG
AGACCTATAATGCCTGGTGTTCTTATGGTGGAGGCAATGGTGGATCTCGAGAGAACTTCT
TTTTTGCAGGGATTGATAAAGTGAGATTTCGTAAGCCTGTGATTGCTGGAGACAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13866#0      TCGCCACGCTTCCACTCTGCTCGTCCTCCTCCTCCTCCCCTTCTCCGCAGCAACAGCCCA 60
consensus_13866#1      ------------------------------------------------------------
                                                                                   

consensus_13866#0      AACGGGCGCGGGCGCCAATGGAGACCGCGGCGATGCCAAGATCTCCGTGCTGCTCCCTCC 120
consensus_13866#1      ------------------------------------------------------------
                                                                                   

consensus_13866#0      CCTCCGCCCGTGTCCTCCCCTCCCGCCTTCCCCTCCTGCCCCGCCCCGCGCCGGCGGCTC 180
consensus_13866#1      --------------------TCCCGCCTTCCCCTCCTGCCCCGCCCCGCGCCGGCGGNTC 40
                                           ************************************* **

consensus_13866#0      TCTCGGCCCCGGCCGCCAGGCCGGTCGTGGCCCGGTGCGCCGCCGCCGCCGGCCACGGGG 240
consensus_13866#1      TCTCGGCCCCGGCCGCCAGGCCGGTCGTGGCCCGGTGCGCCGCCGCCGCCGGCCACGGGG 100
                       ************************************************************

consensus_13866#0      GCGAGGGCGAGATGCCCATAGAGAAGAGGTTTCCTCCCTTCCCGGCTGTGATGGACATCA 300
consensus_13866#1      GCGAGGGCGAGATGCCCATAGAGAAGAGGTTTCCTCCCTTCCCGGCTGTGATGGACATCA 160
                       ************************************************************

consensus_13866#0      ACCAAATCCGCGATATCTTGCCGCACAGGTTTCCATTCCTTCTGGTTGATAGAGTGATTG 360
consensus_13866#1      ACCAAATCCGCGATATCTTGCCGCACAGGTTTCCATTCCTTCTGGTTGATAGAGTGATTG 220
                       ************************************************************

consensus_13866#0      ATTACAAGCCAGGGGAATATGCTGTTGGGATCAAGAATGTTACAATAAATGATAACTTCT 420
consensus_13866#1      ATTACAAGCCAGGGGAATATGCTGTTGGGATCAAGAATGTTACAATAAATGATAACTTCT 280
                       ************************************************************

consensus_13866#0      TCCCAGGGCATTTTCCGGAGAGACCTATAATGCCTGGTGTTCTTATGGTGGAGGCAATGG 480
consensus_13866#1      TCCCAGGGCATTTTCCGGAGAGACCTATAATGCCTGGTGTTCTTATGGTGGAGGCAATGG 340
                       ************************************************************

consensus_13866#0      CCCAGGTTGGAGGTCTGGTTATGTTGCAACCTGAAGTTGGTGGATCTCGAGAGAACTTCT 540
consensus_13866#1      ----------------------------------------TGGATCTCGAGAGAACTTCT 360
                                                               ********************

consensus_13866#0      TTTTTGCAGGGATTGATAAAGTGAGATTTCGTAAGCCTGTGATTGCTGGAGACACCTTGA 600
consensus_13866#1      TTTTTGCAGGGATTGATAAAGTGAGATTTCGTAAGCCTGTGATTGCTGGAGACAC----- 415
                       *******************************************************     

consensus_13866#0      TTATAAGGATGACTCTGATCAAGTTGCAGAAGAGGTTTGGAATCGCAAAGATGGAAGGAA 660
consensus_13866#1      ------------------------------------------------------------
                                                                                   

consensus_13866#0      AAGCATATGTTGGAGGCGACCTAGTATGTGAGGGAGAGTTCTTGATGGCAACCGGATCTG 720
consensus_13866#1      ------------------------------------------------------------
                                                                                   

consensus_13866#0      AATAAGGTACAAGGCAATGGTGCAGCTTCATTGCCTACCACAATCAAGTTTTGGACCATG 780
consensus_13866#1      ------------------------------------------------------------
                                                                                   

consensus_13866#0      TTTGTAACAGTGTACTGTAGCTCCTATAGTCTAGTCTCGATGGTGATGCTTAATGCAGGA 840
consensus_13866#1      ------------------------------------------------------------
                                                                                   

consensus_13866#0      CTGCTGAGCTATAAAATGCTTTTTATGCCGATGATGGTAAAATTGAATCAACCAGATATG 900
consensus_13866#1      ------------------------------------------------------------
                                                                                   

consensus_13866#0      TATATGGACGACGTCTTTGCTTTTTGAAAATAATCCTGCAA 941
consensus_13866#1      -----------------------------------------