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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13867#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1940 fasta sequence
[GAGTAGAAAACTGCCCCACACATCCATCGCCGGATTCGCCTCCGCCTCTCCCTTCCTCTCGTCGGCGGCAGCAAGCGGCGGCGGCGGCGGAGCTCCGGATTCGAGGGGACCAAGCATCGCCTGCAGAGGAATCCGCCTGAAGGATTGGACTTCGATTCCGGGAGGATCCCCGCCCGGATCCGAATTTTGGCCGACCGGGATCCCCGTCTCCTCCGCCGAGATGGGGAGCACCTCGTCGATGCTGACGCAGTACGACATCGAGGAGGTCCAGGACCACTGCGACCACGCCTTCTCGCAGCAGGAGATCGTGTCGCTGTACCACCGGTTCTGCCAGCTCGACCGGAATGGGGGCGGATTCGTCTCCGCCGAGGAATTCATGACCGTCCCCGAGTTCGCCGTGAACCCTCTCTCTCAGAGGCTTCTGAGGATGCTCGATGGGCTGAACTTTAAGGAGTTCGTGGCGTTCTTATCGGCGTTTAGTCCCCGCGCAAGCCTGCAGCAAAAAATTGAATGGTTTATGACACTGACTGCAATGGGAAGGTGGCATTTGATGATATCTTGAGCATCTTGCGGGATCTGTCTGGTTCTTTTATGACTGAGCAGCAGAGGCAGAAAGTTTTGATCCATGTTTTAGAAGAAGCTGGCTATACAAAAGATTCAAATTTTACTCTGCCAGACTTTATGAAGATTCTTGACAATTCTGATGTGAAGATGGAGGTTGAAGTTCCTATTGACTAAGTACTTGTGTCATTGTTCTGTGCCCCGGCATGCTTAATTAACTTTTACCACCCGTGCATCCTATGACCTTTCAGGTACTGTTACCCTGTAAGGTCCCCTTCATTTTTTCCTAACATCTTTTCATATTGAAAACGTCTGTGATATTATGGCTTATTAATCCTTTCTAGTACCTTCCATTATGAGTGAAAAAAATGTTCTTTGTTCTCTCGCATCGAGGATATCTGCAAATTGGAGCAGGAACAATTTGGGCTTGCTTGGATCATTGTCAATCCATGCCTTACCAAAATATTGGCATGCTAAATTTTTTTTGGTGGAGTATGATTGGTTGGTTTGTTGCCAAGTTGTTTGAGCTCATGGTTCTCTTGCCATTTTTTTTTTGATCCCCAGAGGCCCAGTTCAAATGCACGTCTAGCTTCTCCAGCTACTAATCTTCTGCATGGCAAGTTTAGAGGCAGTAATCCAAAAACAAGCCCTTTATCTCGTCGTACAATGGGCAATGCAACAATATTCATTTCTCTAGGTCAATATGGCTAACCAAAGGACATGCTGCTCTGGCTTTTTATCTGCCATCCTCATGTTTGTTGGTATTCCAGGCAGACTGGTGAAGAGTAAATAGGTTTGCTCAGCTCAGATGACTCCAAATTCACATCCCAAAAATAAGGAACACCTTCCTGTCTTTCTCCCTCTAAAGTTGAGGTCATCAATGTTTTCTCCTATTAATAGACGCTAAGCTGATTACCTGCACTTCTCCCTAGCAGGGAGGAAGGAATGGCAGAACCATTGGAGAATTGGATCTTTGGCTCATCGTTGGGGGGTTTCAAATATCGGTTCAATAGATGAATTTAATAGATTCTAAGGCAAATAGTAAACCATATACTAATCAGAGCCTTTGAGAAAGATGGCAGAAACTGAAGATACTCAGTTACAAAAAGCAATATTCGCACAGTACATTATGATGAAGAAGTTATTCATGGAGTTGGAAGAGGAGAGAGAAGCTTCAGCAACTTCTGCAAGTGCAGCCTTGTCAATGATTCGAAAGCTTCAGAAGGAGAAGGAGGAGCAGAGGATGGAAGCATGGCAGTACAAGAGGATAGCTGAGGAAAAGATTAGCCACAGTGACAAAGCACTGGAGATTCTACAGGAAGTCCTTCAACAGAAGGAACTGGAGAATTTTTATCTGAGAAACCAATTGCTGGTGTATA]
[+] EMBL CF318009 [GAGTAGAAAACTGCCCCACACATCCATCGCCGGATTCGCCTCCGCCTCTCCCTTCCTCTCGTCGGCGGCAGCAAGCGGCGGCGGCGGCGGAGCTCCGGATTCGAGGGGACCAAGCATCGCCTGCAGAGGAATCCGCCTGAAGGATTGGACTTCGATTCCGGGAGGATCCCCGCCCGGATCCGAATTTTGGCCGACCGGGATCCCCGTCTCCTCCGCCGAGATGGGGAGCACCTCGTCGATGCTGACGCAGTACGACATCGAGGAGGTCCAGGACCACTGCGACCACGCCTTCTCGCAGCAGGAGATCGTGTCGCTGTACCACCGGTTCTGCCAGCTCGACCGGAATGGGGGCGGATTCGTCTCCGCCGAGGAATTCATGACCGTCCCCGAGTTCGCCGTGAACCCTCTCTCTCAGAGGCTTCTGAGGATGCTCGATGGGCTGAACTTTAAGGAGTTCGTGGCGTTCTTATCGGCGTTTAGTCCCCGCGCAAGCCTGCAGCAAAAAATTGAATGGTTTATGACACTGACTGCAATGGGAAGGTGGCATTTGATGATATCTTGAGCATCTTGCGGGATCTGTCTGGTTCT ]
[+] EMBL AK071719 [ TGCCCCACACATCCATCGCCGGATTCGCCTCCGCCTCTCCCTTCCTCTCGTCGGCGGCAGCAAGCGGCGGCGGCGGCGGAGCTCCGGATTCGAGGGGACCAAGCATCGCCTGCAGAGGAATCCGCCTGAAGGATTGGACTTCGATTCCGGGAGGATCCCCGCCCGGATCCGAATTTTGGCCGACCGGGATCCCCGTCTCCTCCGCCGAGATGGGGAGCACCTCGTCGATGCTGACGCAGTACGACATCGAGGAGGTCCAGGACCACTGCGACCACGCCTTCTCGCAGCAGGAGATCGTGTCGCTGTACCACCGGTTCTGCCAGCTCGACCGGAATGGGGGCGGATTCGTCTCCGCCGAGGAATTCATGACCGTCCCCGAGTTCGCCGTGAACCCTCTCTCTCAGAGGCTTCTGAGGATGCTCGATGGGCTGAACTTTAAGGAGTTCGTGGCGTTCTTATCGGCGTTTAGTCCCCGCGCAAGCCTGCAGCAAAAAATTGAATGGTTTATGACACTGACTGCAATGGGAAGGTGGCATTTGATGATATCTTGAGCATCTTGCGGGATCTGTCTGGTTCTTTTATGACTGAGCAGCAGAGGCAGAAAGTTTTGATCCATGTTTTAGAAGAAGCTGGCTATACAAAAGATTCAAATTTTACTCTGCCAGACTTTATGAAGATTCTTGACAATTCTGATGTGAAGATGGAGGTTGAAGTTCCTATTGACTAAGTACTTGTGTCATTGTTCTGTGCCCCGGCATGCTTAATTAACTTTTACCACCCGTGCATCCTATGACCTTTCAGGTACTGTTACCCTGTAAGGTCCCCTTCATTTTTTCCTAACATCTTTTCATATTGAAAACGTCTGTGATATTATGGCTTATTAATCCTTTCTAGTACCTTCCATTATGAGTGAAAAAAATGTTCTTTGTTCTCTCGCATCGAGGATATCTGCAAATTGGAGCAGGAACAATTTGGGCTTGCTTGGATCATTGTCAATCCATGCCTTACCAAAATATTGGCATGCTAAATTTTTTTTGGTGGAGTATGATTGGTTGGTTTGTTGCCAAGTTGTTTGAGCTCATGGTTCTCTTGCCATTTTTTTTTTGATCCCCAGAGGCCCAGTTCAAATGCACGTCTAGCTTCTCCAGCTACTAATCTTCTGCATGGCAAGTTTAGAGGCAGTAATCCAAAAACAAGCCCTTTATCTCGTCGTACAATGGGCAATGCAACAATATTCATTTCTCTAGGTCAATATGGCTAACCAAAGGACATGCTGCTCTGGCTTTTTATCTGCCATCCTCATGTTTGTTGGTATTCCAGGCAGACTGGTGAAGAGTAAATAGGTTTGCTCAGCTCAGATGACTCCAAATTCACATCCCAAAAATAAGGAACACCTTCCTGTCTTTCTCCCTCTAAAGTTGAGGTCATCAATGTTTTCTCCTATTAATAGACGCTAAGCTGATTACCTGCACTTCTCCCTAGCAGGGAGGAAGGAATGGCAGAACCATTGGAGAATTGGATCTTTGGCTCATCGTTGGGGGGTTTCAAATATCGGTTCAATAGATGAATTTAATAGATTCTAAGGCAAATAGTAAACCATATACTAATCAGAGCCTTTGAGAAAGATGGCAGAAACTGAAGATACTCAGTTACAAAAAGCAATATTCGCACAGTACATTATGATGAAGAAGTTATTCATGGAGTTGGAAGAGGAGAGAGAAGCTTCAGCAACTTCTGCAAGTGCAGCCTTGTCAATGATTCGAAAGCTTCAGAAGGAGAAGGAGGAGCAGAGGATGGAAGCATGGCAGTACAAGAGGATAGCTGAGGAAAAGATTAGCCACAGTGACAAAGCACTGGAGATTCTACAGGAAGTCCTTCAACAGAAGGAACTGGAGAATTTTTATCTGAGAAACCAATTGCTGGTGTATA]
consensusID : consensus_13867#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1040 fasta sequence
[CCACACTGCCCCACACATCCATCGCCGGATTCGCCTCCGCCTCTCCCTTCCTCTCGTCGGCGGCAGCAAGCGGCGGCGGCGGCGGAGCTCCGGATTCGAGGGGACCAAGCATCGCCTGCAGAGGAATCCGCCTGAAGGATTGGACTTCGATTCCGGGAGGATCCCCGCCCGGATCCGAATTTTGGCCGACCGGGATCCCCGTCTCCTCCGCCGAGATGGGGAGCACCTCGTCGATGCTGACGCAGTACGACATCGAGGAGGTCCAGGACCACTGCGACCACGCCTTCTCGCAGCAGGAGATCGTGTCGCTGTACCACCGGTTCTGCCAGCTCGACCGGAATGGGGGCGGATTCGTCTCCGCCGAGGAATTCATGACCGTCCCCGAGTTCGCCGTGAACCCTCTCTCTCAGAGGCTTCTGAGGATGCTCGATGGGCTGAACTT-TAAGGAGTTCGTGGCGTTCTTATCGGCGTTTAGTCCCCGCGCAAGCCTGCAG-CAAAAAATTGAATTTATTTTCAGGGTTTATGACACTGACTGCAATGGGAAGGTGGCATTTGATGATATCTTGAGCATCTTGCGGGATCTGTCTGGTTCTTTTATGACTGAGCAGCAGAGGCAGAAAGTTTTGATCCATGTTTTAGAAGAAGCTGGCTATACAAAAGATTCAAATTTTACTCTGCCAGACTTTATGAAGATTCTTGACAATTCTGATGTGAAGATGGAGGTTGAAGTTCCTATTGACTAAGTACTTGTGTCATTGTTCTGTGCCCCGGCATGTATGTCAGCTTGAGAAGATGGATTAATTAGACCCTACTAGTAC--T----TTT--TTTATCATGTATTAAGCTGTAATTAGTGAAACATCTGTATTTGATCATTTTCAGGCTTAATTAACTTTTACCACCCGTGCATCCTATGACCTTTCAGGTACTGTTACCCTGTAAGGTCCCCTTCATTTTTTCCTAACAT-CTTTTCATATTGAAAACGTCTGTGATATTATGGCTTATTAATCCTTTCTAGTACCTTCCAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK059843 [CCACACTGCCCCACACATCCATCGCCGGATTCGCCTCCGCCTCTCCCTTCCTCTCGTCGGCGGCAGCAAGCGGCGGCGGCGGCGGAGCTCCGGATTCGAGGGGACCAAGCATCGCCTGCAGAGGAATCCGCCTGAAGGATTGGACTTCGATTCCGGGAGGATCCCCGCCCGGATCCGAATTTTGGCCGACCGGGATCCCCGTCTCCTCCGCCGAGATGGGGAGCACCTCGTCGATGCTGACGCAGTACGACATCGAGGAGGTCCAGGACCACTGCGACCACGCCTTCTCGCAGCAGGAGATCGTGTCGCTGTACCACCGGTTCTGCCAGCTCGACCGGAATGGGGGCGGATTCGTCTCCGCCGAGGAATTCATGACCGTCCCCGAGTTCGCCGTGAACCCTCTCTCTCAGAGGCTTCTGAGGATGCTCGATGGGCTGAACTT TAAGGAGTTCGTGGCGTTCTTATCGGCGTTTAGTCCCCGCGCAAGCCTGCAG CAAAAAATTGAATTTATTTTCAGGGTTTATGACACTGACTGCAATGGGAAGGTGGCATTTGATGATATCTTGAGCATCTTGCGGGATCTGTCTGGTTCTTTTATGACTGAGCAGCAGAGGCAGAAAGTTTTGATCCATGTTTTAGAAGAAGCTGGCTATACAAAAGATTCAAATTTTACTCTGCCAGACTTTATGAAGATTCTTGACAATTCTGATGTGAAGATGGAGGTTGAAGTTCCTATTGACTAAGTACTTGTGTCATTGTTCTGTGCCCCGGCATGTATGTCAGCTTGAGAAGATGGATTAATTAGACCCTACTAGTAC T TTT TTTATCATGTATTAAGCTGTAATTAGTGAAACATCTGTATTTGATCATTTTCAGGCTTAATTAACTTTTACCACCCGTGCATCCTATGACCTTTCAGGTACTGTTACCCTGTAAGGTCCCCTTCATTTTTTCCTAACAT CTTTTCATATTGAAAACGTCTGTGA ]
[+] EMBL CA756489 [ GCCTCCGCCTCTCCCTTCCTCTCGTCGGCGGCAGCAAGCGGCGGCGGCGGCGGAGCTCCGGATTCGAGGGGACCAAGCATCGCCTGCAGAGGAATCCGCCTGAAGGATTGGACTTCGATTCCGGGAGGATCCCCGCCCGGATCCGAATTTTGGCCGACCGGGATCCCCGTCTCCTCCGCCGAGATGGGGAGCACCTCGTCGATGCTGACGCAGTACGACATCGAGGAGGTCCAGGACCACTGCGACCACGCCTTCTCGCAGCAGGAGATCGTGTCGCTGTACCACCGGTTCTGCCAGCTCGACCGGAATGGGGGCGGATTCGTCTCCGCCGAGGAATTCATGACCGTCCCCGAGTTCGCCGTGAACCCTCTCTCTCAGAGGCTTCTGAGGATGCTCGATGGGCTGAACTT TAAGGAGTTCGTGGCGTTCTTATCGGCGTTTAGTCCCCGCGCAAGCCTGCAG CANAAAATTGAATTTATTTTCAGGGTTTATGACACTGACTGCAATGGGAAGGTGGCATTTGATGATATCTTGAGCATCTTGCGGGATCTGTCTGGTTCTTTTATGACTGAGCAGCAGAGGCAGAAAGTTTTGATC ]
[+] EMBL AK102411 [ TCCGGATTCGAGGGGACCAAGCATCGCCTGCAGAGGAATCCGCCTGAAGGATTGGACTTCGATTCCGGGAGGATCCCCGCCCGGATCCGAATTTTGGCCGACCGGGATCCCCGTCTCCTCCGCCGAGATGGGGAGCACCTCGTCGATGCTGACGCAGTACGACATCGAGGAGGTCCAGGACCACTGCGACCACGCCTTCTCGCAGCAGGAGATCGTGTCGCTGTACCACCGGTTCTGCCAGCTCGACCGGAATGGGGGCGGATTCGTCTCCGCCGAGGAATTCATGACCGTCCCCGAGTTCGCCGTGAACCCTCTCTCTCAGAGGCTTCTGAGGATGCTCGATGGGCTGAACTT TAAGGAGTTCGTGGCGTTCTTATCGGCGTTTAGTCCCCGCGCAAGCCTGCAG CAAAAAATTGAATTTATTTTCAGGGTTTATGACACTGACTGCAATGGGAAGGTGGCATTTGATGATATCTTGAGCATCTTGCGGGATCTGTCTGGTTCTTTTATGACTGAGCAGCAGAGGCAGAAAGTTTTGATCCATGTTTTAGAAGAAGCTGGCTATACAAAAGATTCAAATTTTACTCTGCCAGACTTTATGAAGATTCTTGACAATTCTGATGTGAAGATGGAGGTTGAAGTTCCTATTGACTAAGTACTTGTGTCATTGTTCTGTGCCCCGGCATGTATGTCAGCTTGAGAAGATGGATTAATTAGACCCTACTAGTAC T TTT TTTATCATGTATTAAGCTGTAATTAGTGAAACATCTGTATTTGATCATTTTCAGGCTTAATTAACTTTTACCACCCGTGCATCCTATGACCTTTCAGGTACTGTTACCCTGTAAGGTCCCCTTCATTTTTTCCTAACAT CTTTTCATATTGAAAACGTCTGTGATATTATGGCTTATTAATCCTTTCTAGTACCTTCC ]
[+] EMBL BI799197 [ TCTCAGAGGCTTCTGAGGATGCTAGATGGCCTGAACTTCCAAGGAGTTCGTGGCGTTCTAATCGGCGTTTAGTCCCCGCGCAAGCCTGCAGCCTAAAAATTGAATTTATTTTCAGGGTTTATGACACCGACTGCAATGGGAAGGTGGCATTTGATGATATCTTGAGCATCTTGCGGGATCTGACTGGTTCTTTTATGACTGAGCAGCAGAGGCAGAAAGTTTTGATCCATGTTTTAGAAGAAGCTGGCTATACCAAAGATTCAAAATTTACTCTGCCAGACTTTATGAAGATTCTTGACAATTCTGATGTGAAGATGGAGGTTGAAGTTCCAATTGACTAAGTACTTGTGTCATTGTTCTGTGCCCCGGCATGTATGTCAGCTTGAGAAGATGGATTAATTAGACCCTACTAGTACTTT TTT TTTATCATGTATTAAGCTGTAATTAGTGAAACATCTGTATTTGATCATTTTCAGGCTTAATTAACTTTTACCACCCGTGCATCCTATGACCTTTCAGGTACTGTTACCCTGTAAGGTCCCCTTCATTTTTTCCTAACAT CTTTTCATATTGAAAACGTCTGTGATATTAaaaa ]
[+] EMBL BI804298 [ CAGA GCTTCTGAGGATGCTAGAT GGCTGAACTT CAAGGAGTTCGTGGCGTTCTTATCGGCGTTTAGTCCCCGCGCAAGCCTGCAG C AAAAATTGAATTTATTTTCAGGGTTTATGACACCGACTGCAATGGGAAGGTGGCATTTGATGATATCTTGAGCATCTTGCGGGATCTGACTGGTTCTTTTATGACTGAGCAGCAGAGGCAGAAAGTTTTGATCCATGTTTTAGAAGAAGCTGGCTATACCAAAGATTCAAAATTTACTCTGCCAGACTTTATGAAGATTCTTGAC ATTCTGATGTGAAGATGGAGGTTGAAGTTCCAATTGACTAAGTACTTGTGTCATTGTTCTGTGCCCCGGCATGTATGTCAGCTTGAGAAGATGGATTAATTAGACCCTACTAGTAC TTCTCTTT TTTATCATGTATTAAGCTGTAATTAGTGAAACATCTGTATTTGATCATTTTCAGGCTTAATTAACTTTTACCACCCGTGCATCCTATGACCTTTCAGGTACTGTTACCCTGTAAGGTCCCCTTCATTTTTTCCTAACAT CTTTTCATATTGAAAACGTCTGTGATATTAaaaa ]
[+] EMBL BI802981 [ CTGAGGATGCTAGATGGGCTGAACTT CAAGGAGTTCGTGGCGTTCTTATCGGCGTTTAGTCCCCGCGCAAGCCTGCA C AAAAATTGAATTTATTTTCAGGGTTTATGACACCGACTGCAATGGGAAGGTGGCATTTGATGATATCTTGAGCATCTTGCGGGATCTGACTGGTTCTTTTATGACTGAGCAGCAGAGGCAGAAAGTTTTGATCCATGTTTTAGAAGAAGCTGGCTATACCAAAGATTCAAAATTTACTCTGCCAGACTTTATGAAGATTCTTGAC ATTCTGATGTGAAGATGGAGGTTGAAGTTCCCATTGACTAAGTACTTGTGTCATTGTTCTGTGCCCCGGCATGTATGTCAGCTTGAGAAGATGGATTAATTAGACCCTACTAGTAC T TTTCCCCTATCATGTATTAAGCTGTAATTAGTGAAACATCTGTATTTGATCATTTTCAGGCTTAATTAACTTTTACCACCCGTGCATCCTATGACCTTTCAGGTACTGTTACCCTGTAAGGTCCCCTTCATTTTTTCCTAACATCCCCCTCATATTGAACACGTCTGTGATATTAaaaa ]
[+] EMBL CB000355 [ TGCAG CAAAAAATTGAATTTATTTTCAGGGTTCATGACACTGACTGCAATGGGAAGGTGGCATTTGATGATATCTTGAGCATCTTGCGGGATCTGTCTGGTTCTTTTATGACTGAGCAGCAGAGGCAGAAAGTTTTGATCCATGTTTTAGAAGAAGCTGGCTATACAAAAGATTCAAATTTTACTCTGCCAGACTTTATGAAGATTCTTGACAATTCTGATGTGAAGATGGAGGTTGAAGTTCCTATTGACTAAGTACTTGTGTCATTGTTCTGTGCCCCGGCATGTATGTCAGCTTGAGAAGATGGATTAATTAGACCCTACTAGTAC T TTT TTTATCATGTATTAAGCTGTAATTAGTGAAACATCTGTATTTGATCATTTTCAGGCTTAATTAACTTTTACCACCCGTGCATCCTATGACCTTTCAGGTACTGTTACCCTGTAAGGTCCCCTTCATTTTTTCCTAACAT CTTTTCATATTGAAAACGTCTGTGATATTATGGCTTATTAATCCTTTCTAGTACCTTCCAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CB000170 [ TGCAG CAAAAAATTGAATTTATTTTCAGGGTTTCTGACACTGACTGCAATGGGAAGGTGGCATTTGATGATATCTTGAGCATCTTGCGGGATCTGTCTGGTTCTTTTATGACTGAGCAGCAGAGGCAGAAAGTTTTGATCCATGTTTTAGAAGAAGCTGGCTATACAAAAGATTCAAATTTTACTCTGCCAGACTTTATGAAGATTCTTGACAATTCTGATGTGAAGATGGAGGTTGAAGTTCCTATTGACTAAGTACTTGTGTCATTGTTCTGTGCCCCGGCATGTATGTCAGCTTGAGAAGATGGATTAATTAGACCCTACTAGTAC T TTT TTTATCATGTATTAAGCTGTAATTAGTGAAACATCTGTATTTGATCATTTTCAGGCTTAATTAACTTTTACCACCCGTGCATCCTATGACCTTTCAGGTACTGTTACCCTGTAAGGTCCCCTTCATTTTTTCCTAACAT CTTTTCATATTGAAAACGTCTGTGATATTATGGCTTATTAATCCTTTCTAGTACCTTCCAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CB000675 [ GCAG CAAAAAATTGAATTTATTTTCAGGGTTTATGACACTGACTGCAATGGGAAGGTGGCATTTGATGATATCTTGAGCATCTTGCGGGATCTGTCTGGTTCTTTTATGACTGAGCAGCAGAGGCAGAAAGTTTTGATCCATGTTTTAGAAGAAGCTGGCTATACAAAAGATTCAAATTTTACTCTGCCAGACTTTATGAAGATTCTTGACAATTCTGATGTGAAGATGGAGGTTGAAGTTCCTATTGACTAAGTACTTGTGTCATTGTTCTGTGCCCCGGCATGTATGTCAGCTTGAGAAGATGGATTAATTAGACCCTACTAGTAC T TTT TTTATCATGTATTAAGCTGTAATTAGTGAAACATCTGTATTTGATCATTTTCAGGCTTAATTAACTTTTACCACCCGTGCATCCTATGACCTTTCAGGTACTGTTACCCTGTAAGGTCCCCTTCATTTTTTCCTAACAT CTTTTCATATTGAAAACGTCTGTGATATTATGGCTTATTAATCCTTTCTAGTACCTTCCAAAANAAAAAAAAAAAAAAA]
[-] EMBL CF337469 [ attgaatGGTTTATGACACTGACTGCAATGGGAAGGTGGCATTTGATGATATCTTGAGCATCTTGCGGGATCTGTCTGGTTCTTTTATGACTGAGCAGCAGAGGCAAAAAGTTTTGATCCATGTTTTAGAAGAAGCTGGCTATACAAAAGATTCAAATTTTACTCTGCCAGACTTTATGAAGATTCTTGACAATTCTGATGTGAAGATGGAGGTTGAAGTTCCTATTGACTAAGTACTTGTGTCATTGTTCTGTGCCCCGGCATGTATGTCAGCTTGAGAAGATGGATTAATTAGACCCTACTAGTACT T TTT TTTATCATGTATTAAGCTGTAATTAGTGAAACATCTGTATTTGATCATTTTCAGGCTTAATTAACTTTTACCAaaaaa ]
consensusID : consensus_13867#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 675 fasta sequence
[TGCCCCCCGGTTCCCGGTTCGCCGATGGGGCGCGATTCTTCTCCCCGGGAATTCTCTGCCTCCCGGTTTCCCTGGACCCTTTCTCTCAAAAACTTTTTAAGAATCTTAAAATGCCTGAACTTCCAAGAATTTCTGCCTTCTTATCGGCGTTTAGTCCCCGCGCAACCTGCACAAAAAATTGAATTTATTTTCAGGGTTTATGACACCGACTCCAATGGGAAGGTGGCATTTGATGATATCTTGAGCATCTTGCGGGATCTGACTGGTTCTTTTATGACTGAGCAGCAGAGGCAGAAAGTTTTGATCCATGTTTTAGAAGAAGCTGGCTATACCAAAGATTCAAATTTACTCTGCCAGACTTTATGAAGATTCTTGACATTCTGATGTGAAGATGGAGGTTGAAGTTCCATTGACTAAGTACTTGTGTCATTGTTCTGTGCCCCGGCATGTATGTCAGCCTTGAGAAGATGGATTAATTAGACCCTACTAGTACTTTTTCTCTTTATCATGTATTAAGCTGTAATTAGTGAAACATCTGTATTTGATCATTTTCAGGCTTAATTAACTTTTACCACCCGTGCATCCTATGACCTTTCAGGTACTGTTACCCTGTAAGGTCCCCTTCATTTTTTCCTAACATCTTCTTCATATTGAAAACGTCTGTGATATTAAAAA]
[+] EMBL BI803303 [TGCCCCCCGGTTCCCGGTTCGCCGATGGGGCGCGATTCTTCTCCCCGGGAATTCTCTGCCTCCCGGTTTCCCTGGACCCTTTCTCTCAAAAACTTTTTAAGAATCTTAAAATGCCTGAACTTCCAAGAATTTCTGCCTTCTTATCGGCGTTTAGTCCCCGCGCAACCTGCACAAAAAATTGAATTTATTTTCAGGGTTTATGACACCGACTCCAATGGGAAGGTGGCATTTGATGATATCTTGAGCATCTTGCGGGATCTGACTGGTTCTTTTATGACTGAGCAGCAGAGGCAGAAAGTTTTGATCCATGTTTTAGAAGAAGCTGGCTATACCAAAGATTCAAATTTACTCTGCCAGACTTTATGAAGATTCTTGACATTCTGATGTGAAGATGGAGGTTGAAGTTCCATTGACTAAGTACTTGTGTCATTGTTCTGTGCCCCGGCATGTATGTCAGCCTTGAGAAGATGGATTAATTAGACCCTACTAGTACTTTTTCTCTTTATCATGTATTAAGCTGTAATTAGTGAAACATCTGTATTTGATCATTTTCAGGCTTAATTAACTTTTACCACCCGTGCATCCTATGACCTTTCAGGTACTGTTACCCTGTAAGGTCCCCTTCATTTTTTCCTAACATCTTCTTCATATTGAAAACGTCTGTGATATTAAAAA]
consensusID : consensus_13867#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 514 fasta sequence
[TTTTCAGGTTTATGACCCCGACTGCAATGGGAAGGTGCCACTTTGATGATATCTTGAGCATCTTCGCGGGATCTGACTGGTTCTTTTATGACTGGACACGCAGAGGCAGAAAGTCTTTGGATCCATGGTTTTAGAAGAAGCTGGGCTATACCAAAGATTCCAAAATGTTGACTCTGGCCAGACTTTATGGAAGATTCTGTGGACAATTGCTGGATGGTGGAAGATGGGAGGTTGAAGTGTGCCAATTGGACTAAGTACTTGTGTCATTGTTCTGTGCCCCGGCATGTATGTCAGCTTGAGAAGATGGGATTAATTAGACCCTACTAGTACTTTTTTTGTGTATCATGTATTAAGCTGGTAATTAGTGAAACATCTGGTATTTGGATCATTTTCAGGCTTAATTAACTTTTACCACCCGTGCATCCTATGACCTTTCAGGTACTGTTACCCTGTAAGGTCCCCTTCATTTTTTCCTAACATCTTTTCATATTGAAAACGTCTGTGATATTAAAAA]
[+] EMBL BI803232 [TTTTCAGGTTTATGACCCCGACTGCAATGGGAAGGTGCCACTTTGATGATATCTTGAGCATCTTCGCGGGATCTGACTGGTTCTTTTATGACTGGACACGCAGAGGCAGAAAGTCTTTGGATCCATGGTTTTAGAAGAAGCTGGGCTATACCAAAGATTCCAAAATGTTGACTCTGGCCAGACTTTATGGAAGATTCTGTGGACAATTGCTGGATGGTGGAAGATGGGAGGTTGAAGTGTGCCAATTGGACTAAGTACTTGTGTCATTGTTCTGTGCCCCGGCATGTATGTCAGCTTGAGAAGATGGGATTAATTAGACCCTACTAGTACTTTTTTTGTGTATCATGTATTAAGCTGGTAATTAGTGAAACATCTGGTATTTGGATCATTTTCAGGCTTAATTAACTTTTACCACCCGTGCATCCTATGACCTTTCAGGTACTGTTACCCTGTAAGGTCCCCTTCATTTTTTCCTAACATCTTTTCATATTGAAAACGTCTGTGATATTAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13867#2 ------------------------------------------------------------
consensus_13867#3 ------------------------------------------------------------
consensus_13867#1 -----CCACACTGCCCCACACATCCATCGCCGGATTCGCCTCCGCCTCTCCCTTCCTCTC 55
consensus_13867#0 GAGTAGAAAACTGCCCCACACATCCATCGCCGGATTCGCCTCCGCCTCTCCCTTCCTCTC 60
consensus_13867#2 ------------------------------------------------------------
consensus_13867#3 ------------------------------------------------------------
consensus_13867#1 GTCGGCGGCAGCAAGCGGCGGCGGCGGCGGAGCTCCGGATTCGAGGGGACCAAGCATCGC 115
consensus_13867#0 GTCGGCGGCAGCAAGCGGCGGCGGCGGCGGAGCTCCGGATTCGAGGGGACCAAGCATCGC 120
consensus_13867#2 ------------------------------------------------------------
consensus_13867#3 ------------------------------------------------------------
consensus_13867#1 CTGCAGAGGAATCCGCCTGAAGGATTGGACTTCGATTCCGGGAGGATCCCCGCCCGGATC 175
consensus_13867#0 CTGCAGAGGAATCCGCCTGAAGGATTGGACTTCGATTCCGGGAGGATCCCCGCCCGGATC 180
consensus_13867#2 ------------------------------------------------------------
consensus_13867#3 ------------------------------------------------------------
consensus_13867#1 CGAATTTTGGCCGACCGGGATCCCCGTCTCCTCCGCCGAGATGGGGAGCACCTCGTCGAT 235
consensus_13867#0 CGAATTTTGGCCGACCGGGATCCCCGTCTCCTCCGCCGAGATGGGGAGCACCTCGTCGAT 240
consensus_13867#2 ------------------------------------------------------------
consensus_13867#3 ------------------------------------------------------------
consensus_13867#1 GCTGACGCAGTACGACATCGAGGAGGTCCAGGACCACTGCGACCACGCCTTCTCGCAGCA 295
consensus_13867#0 GCTGACGCAGTACGACATCGAGGAGGTCCAGGACCACTGCGACCACGCCTTCTCGCAGCA 300
consensus_13867#2 ---------------------TGCCCCCCGGTTCCCGGTTCGCCGATGGGGCGCGATTCT 39
consensus_13867#3 ------------------------------------------------------------
consensus_13867#1 GGAGATCGTGTCGCTGTACCACCGGTTCTGCCAGCTCGACCGGAATGGGGGCGGATTCGT 355
consensus_13867#0 GGAGATCGTGTCGCTGTACCACCGGTTCTGCCAGCTCGACCGGAATGGGGGCGGATTCGT 360
consensus_13867#2 TCTCCCCGGGAATTCTCTG-----CCTCCCGGTTTCCCTGGACCCTTTCTCTCAAAAACT 94
consensus_13867#3 ------------------------------------------------------------
consensus_13867#1 CTCCGCCGAGGAATTCATGACCGTCCCCGAGTTCGCCGTGAACCCTCTCTCTCAGAGGCT 415
consensus_13867#0 CTCCGCCGAGGAATTCATGACCGTCCCCGAGTTCGCCGTGAACCCTCTCTCTCAGAGGCT 420
consensus_13867#2 TTTTAAGAATCTTAAAATGCCTGAACTTCCAAGAATTTCTGCCTTCTTATCGGCGTTTAG 154
consensus_13867#3 ------------------------------------------------------------
consensus_13867#1 TCTGAGGATGCTCGATGGGCTGAACTTTAAGGAGTTCGTGGCGTTCTTATCGGCGTTTAG 475
consensus_13867#0 TCTGAGGATGCTCGATGGGCTGAACTTTAAGGAGTTCGTGGCGTTCTTATCGGCGTTTAG 480
consensus_13867#2 TCCCCGCGCAA-CCTGCA-CAAAAAATTGAATTTATTTTCAGGGTTTATGACACCGACTC 212
consensus_13867#3 -----------------------------------TTTTCAGG-TTTATGACCCCGACTG 24
consensus_13867#1 TCCCCGCGCAAGCCTGCAGCAAAAAATTGAATTTATTTTCAGGGTTTATGACACTGACTG 535
consensus_13867#0 TCCCCGCGCAAGCCTGCAGCAAAAAA----------TTGAATGGTTTATGACACTGACTG 530
** * * ******** * ****
consensus_13867#2 CAATGGGAAGGTGGCA-TTTGATGATATCTTGAGCATCTT-GCGGGATCTGACTGGTTCT 270
consensus_13867#3 CAATGGGAAGGTGCCACTTTGATGATATCTTGAGCATCTTCGCGGGATCTGACTGGTTCT 84
consensus_13867#1 CAATGGGAAGGTGGCA-TTTGATGATATCTTGAGCATCTT-GCGGGATCTGTCTGGTTCT 593
consensus_13867#0 CAATGGGAAGGTGGCA-TTTGATGATATCTTGAGCATCTT-GCGGGATCTGTCTGGTTCT 588
************* ** *********************** ********** ********
consensus_13867#2 TTTATGACTGAGCA-GCAGAGGCAGAAAGTTTT--GATCCATG-TTTTAGAAGAAGCTGG 326
consensus_13867#3 TTTATGACTGGACACGCAGAGGCAGAAAGTCTTTGGATCCATGGTTTTAGAAGAAGCTGG 144
consensus_13867#1 TTTATGACTGAGCA-GCAGAGGCAGAAAGTTTT--GATCCATG-TTTTAGAAGAAGCTGG 649
consensus_13867#0 TTTATGACTGAGCA-GCAGAGGCAGAAAGTTTT--GATCCATG-TTTTAGAAGAAGCTGG 644
********** ** *************** ** ******** ****************
consensus_13867#2 -CTATACCAAAGATTCAAA----TTTACTCTG-CCAGACTTTATG-AAGATTCT--TGAC 377
consensus_13867#3 GCTATACCAAAGATTCCAAAATGTTGACTCTGGCCAGACTTTATGGAAGATTCTGTGGAC 204
consensus_13867#1 -CTATACAAAAGATTCAAAT---TTTACTCTG-CCAGACTTTATG-AAGATTCT--TGAC 701
consensus_13867#0 -CTATACAAAAGATTCAAAT---TTTACTCTG-CCAGACTTTATG-AAGATTCT--TGAC 696
****** ******** ** ** ****** ************ ******** ***
consensus_13867#2 ATTC------TGATGTGAAGATGGAGGTTGAAGT---TCCATTG-ACTAAGTACTTGTGT 427
consensus_13867#3 AATTGCTGGATGGTGGAAGATGGGAGGTTGAAGTGTGCCAATTGGACTAAGTACTTGTGT 264
consensus_13867#1 AATTC-----TGATGTGAAGATGGAGGTTGAAGT--TCCTATTG-ACTAAGTACTTGTGT 753
consensus_13867#0 AATTC-----TGATGTGAAGATGGAGGTTGAAGT--TCCTATTG-ACTAAGTACTTGTGT 748
* * ** ** * ************ * **** ***************
consensus_13867#2 CATTGTTCTGTGCCCCGGCATGTATG-TCAGCCTTGAGAAGATGG-ATTAATTAGACCCT 485
consensus_13867#3 CATTGTTCTGTGCCCCGGCATGTATG-TCAGC-TTGAGAAGATGGGATTAATTAGACCCT 322
consensus_13867#1 CATTGTTCTGTGCCCCGGCATGTATG-TCAGC-TTGAGAAGATGG-ATTAATTAGACCCT 810
consensus_13867#0 CATTGTTCTGTGCCCCGGCATGCTTAATTAACTTTTACCACCCGTGCATCCTATGACCTT 808
********************** * * * * ** * * * * * **** *
consensus_13867#2 ACTAGTACTTTTTCTCTTTA---------TCATGTATTA-----AGCTG-TAATTAGTGA 530
consensus_13867#3 ACTAGTACTTTTTTTGTGTA---------TCATGTATTA-----AGCTGGTAATTAGTGA 368
consensus_13867#1 ACTAGTACTTTTTTT----A---------TCATGTATTA-----AGCTG-TAATTAGTGA 851
consensus_13867#0 TCAGGTACTGTTACCCTGTAAGGTCCCCTTCATTTTTTCCTAACATCTTTTCATATTGAA 868
* ***** ** * **** * ** * ** * ** *
consensus_13867#2 AACATCTG---TATT-TG-ATCATTTTCAGGCTTAATTAACTTTTACCACCCGTGCA--- 582
consensus_13867#3 AACATCTGG--TATT-TGGATCATTTTCAGGCTTAATTAACTTTTACCACCCGTGCA--- 422
consensus_13867#1 AACATCTG---TATT-TG-ATCATTTTCAGGCTTAATTAACTTTTACCACCCGTGCA--- 903
consensus_13867#0 AACGTCTGTGATATTATGGCTTATTAATCCTTTCTAGTACCTTCCATTATGAGTGAAAAA 928
*** **** **** ** * *** * * ** *** * * *** *
consensus_13867#2 ----TCCTATGACCTTTCAGGTACTGTTACCCTGTAAGGTCCCCTTCATTTTTTCCTAAC 638
consensus_13867#3 ----TCCTATGACCTTTCAGGTACTGTTACCCTGTAAGGTCCCCTTCATTTTTTCCTAAC 478
consensus_13867#1 ----TCCTATGACCTTTCAGGTACTGTTACCCTGTAAGGTCCCCTTCATTTTTTCCTAAC 959
consensus_13867#0 AATGTTCTTTGTTCTCTCGCATCGAGGATATCTGCAAATTGGAGCAGGAACAATTTGGGC 988
* ** ** ** ** * * *** ** * * *
consensus_13867#2 ATCTTCTTCATATTGAAAACGTCTGTGATATTAAAAA----------------------- 675
consensus_13867#3 ATCTT-TTCATATTGAAAACGTCTGTGATATTAAAAA----------------------- 514
consensus_13867#1 ATCTT-TTCATATTGAAAACGTCTGTGATATTATGGCTTATTAATCCTTTCTAGTACCTT 1018
consensus_13867#0 TTGCTTGGATCATTGTCAATCCATGCCTTACCAAAATATTGGCATGCTAAATTTTTTTTG 1048
* * **** ** ** ** *
consensus_13867#2 ------------------------------------------------------------
consensus_13867#3 ------------------------------------------------------------
consensus_13867#1 CCAAAAAAAAAAAAAAAAAAAA-------------------------------------- 1040
consensus_13867#0 GTGGAGTATGATTGGTTGGTTTGTTGCCAAGTTGTTTGAGCTCATGGTTCTCTTGCCATT 1108
consensus_13867#2 ------------------------------------------------------------
consensus_13867#3 ------------------------------------------------------------
consensus_13867#1 ------------------------------------------------------------
consensus_13867#0 TTTTTTTTGATCCCCAGAGGCCCAGTTCAAATGCACGTCTAGCTTCTCCAGCTACTAATC 1168
consensus_13867#2 ------------------------------------------------------------
consensus_13867#3 ------------------------------------------------------------
consensus_13867#1 ------------------------------------------------------------
consensus_13867#0 TTCTGCATGGCAAGTTTAGAGGCAGTAATCCAAAAACAAGCCCTTTATCTCGTCGTACAA 1228
consensus_13867#2 ------------------------------------------------------------
consensus_13867#3 ------------------------------------------------------------
consensus_13867#1 ------------------------------------------------------------
consensus_13867#0 TGGGCAATGCAACAATATTCATTTCTCTAGGTCAATATGGCTAACCAAAGGACATGCTGC 1288
consensus_13867#2 ------------------------------------------------------------
consensus_13867#3 ------------------------------------------------------------
consensus_13867#1 ------------------------------------------------------------
consensus_13867#0 TCTGGCTTTTTATCTGCCATCCTCATGTTTGTTGGTATTCCAGGCAGACTGGTGAAGAGT 1348
consensus_13867#2 ------------------------------------------------------------
consensus_13867#3 ------------------------------------------------------------
consensus_13867#1 ------------------------------------------------------------
consensus_13867#0 AAATAGGTTTGCTCAGCTCAGATGACTCCAAATTCACATCCCAAAAATAAGGAACACCTT 1408
consensus_13867#2 ------------------------------------------------------------
consensus_13867#3 ------------------------------------------------------------
consensus_13867#1 ------------------------------------------------------------
consensus_13867#0 CCTGTCTTTCTCCCTCTAAAGTTGAGGTCATCAATGTTTTCTCCTATTAATAGACGCTAA 1468
consensus_13867#2 ------------------------------------------------------------
consensus_13867#3 ------------------------------------------------------------
consensus_13867#1 ------------------------------------------------------------
consensus_13867#0 GCTGATTACCTGCACTTCTCCCTAGCAGGGAGGAAGGAATGGCAGAACCATTGGAGAATT 1528
consensus_13867#2 ------------------------------------------------------------
consensus_13867#3 ------------------------------------------------------------
consensus_13867#1 ------------------------------------------------------------
consensus_13867#0 GGATCTTTGGCTCATCGTTGGGGGGTTTCAAATATCGGTTCAATAGATGAATTTAATAGA 1588
consensus_13867#2 ------------------------------------------------------------
consensus_13867#3 ------------------------------------------------------------
consensus_13867#1 ------------------------------------------------------------
consensus_13867#0 TTCTAAGGCAAATAGTAAACCATATACTAATCAGAGCCTTTGAGAAAGATGGCAGAAACT 1648
consensus_13867#2 ------------------------------------------------------------
consensus_13867#3 ------------------------------------------------------------
consensus_13867#1 ------------------------------------------------------------
consensus_13867#0 GAAGATACTCAGTTACAAAAAGCAATATTCGCACAGTACATTATGATGAAGAAGTTATTC 1708
consensus_13867#2 ------------------------------------------------------------
consensus_13867#3 ------------------------------------------------------------
consensus_13867#1 ------------------------------------------------------------
consensus_13867#0 ATGGAGTTGGAAGAGGAGAGAGAAGCTTCAGCAACTTCTGCAAGTGCAGCCTTGTCAATG 1768
consensus_13867#2 ------------------------------------------------------------
consensus_13867#3 ------------------------------------------------------------
consensus_13867#1 ------------------------------------------------------------
consensus_13867#0 ATTCGAAAGCTTCAGAAGGAGAAGGAGGAGCAGAGGATGGAAGCATGGCAGTACAAGAGG 1828
consensus_13867#2 ------------------------------------------------------------
consensus_13867#3 ------------------------------------------------------------
consensus_13867#1 ------------------------------------------------------------
consensus_13867#0 ATAGCTGAGGAAAAGATTAGCCACAGTGACAAAGCACTGGAGATTCTACAGGAAGTCCTT 1888
consensus_13867#2 ----------------------------------------------------
consensus_13867#3 ----------------------------------------------------
consensus_13867#1 ----------------------------------------------------
consensus_13867#0 CAACAGAAGGAACTGGAGAATTTTTATCTGAGAAACCAATTGCTGGTGTATA 1940
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||