cluster # 13873

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Oryza sativa
cluster # 13873 cluster # 13873 Sequences # 14 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13873#0 length = 1229 sequences # 8
consensus_13873#1 length = 683 sequences # 1

consensus_13873#2 length = 617 sequences # 2
consensus_13873#3 length = 357 sequences # 2
consensus_13873#4 length = 249 sequences # 1

consensusID : consensus_13873#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1229
fasta sequence

                              [TCCTCCACCGCCACCCCCACCGCCGCAGCATCGCCGACGAGCTAGCCCGCCGCCGCTCGAGCGCAAGTTGAGGAGAGGAGGGATGGATCGGTACCAGAGGGTGGAGAAGCCGAGGGAGGAGGCGCCCATCAAGGAGAACGAGATCCGCATCACCACGCAGGGGAGGATGCGCAACTACATCACCTACGCGACCACC-TTGCTCCAGGATAAAGGTTCCGATGAAGTTGTATTCAAGGCAATGGGGAGGGCAATCAACAAAACTGTGATGATTGCAGAGC-TGATCAAGAGAAGAATTGTTGGTCTCCACCAAAACACCACCACTGGATCTAC-TGATATCACTGATATG-TGGGAGCCACTGGAGGAAGGCTTGCTCCCACTT-GAGACAACAAGGCATGTATCTATGATAACTATTACCCTTTC-AAAGAAGGAGCTTGACACATCCTCCATCGGATATCAATCTCCGTTGCCTGCTGATAAGGTTAAGCCTTTGGTTGAATACGAGAACGAAGAAGATGCTCCCTCACCTGCTGGCCGAGGGAGAGGCCGTGGTGGTCAAGGTCGTGGAAGGGGAAGAGGCAGAGGCACACGTGGAAATGGTTACATGGACTATGCTGATGGTGGATGGGAGGATGACCATGCTCCTCCTGCATATGCGGGCAACGGGTACACCCGTGGAAGAGGGCGTGGTTTTAGGGGCCGTGGCAGGAGAGGTGGCGGCTATGGAGCACAACCTGATTATCAGCAAGATGGAGGATACTATGATGAGGCACCAGTTCACGCGCCGCCCCGAGGCCGTGGTCGTGGTCGAGGCCGTGGGAGAGGCCCGGTCCGAGGTAGAGGACGCGGTGGCAACGTCAATGGCGTTATGCATGCTACTGCAGTTGGCGCCTAAGCTGGCTGCTGCTATTCCAAAGCTGTTGTTTGTTGGATGCCTGCTCCAAGTATGAAGATGTATCATCTGTGTTGTTTATGGGTTAACACCATACTCTGTATAAGCTTGACA-TTCTGTTAGAATGCTGCCGGATTTTGATTTTTAACTAGGTTTGTAGGATAGTCTCTATAATGTTTGTTTTTCTTCCAGTAGTAGTTGCAAACTAATTGTAGTGTTCAG-TTGGTAAAGGTTTAGAGCAGTGCATTCTTTCAATTTTTATATAAACCGAAATCCTGTTGCCATCTTATAATGTGCCAGCTTCAAATAGTGAACGCGCAAATGCAGTTGGATTAAAAAA]

[+] EMBL AK102114             [TCCTCCACCGCCACCCCCACCGCCGCAGCATCGCCGACGAGCTAGCCCGCCGCCGCTCGAGCGCAAGTTGAGGAGAGGAGGGATGGATCGGTACCAGAGGGTGGAGAAGCCGAGGGAGGAGGCGCCCATCAAGGAGAACGAGATCCGCATCACCACGCAGGGGAGGATGCGCAACTACATCACCTACGCGACCACC TTGCTCCAGGATAAAGGTTCCGATGAAGTTGTATTCAAGGCAATGGGGAGGGCAATCAACAAAACTGTGATGATTGCAGAGC TGATCAAGAGAAGAATTGTTGGTCTCCACCAAAACACCACCACTGGATCTAC TGATATCACTGATATG TGGGAGCCACTGGAGGAAGGCTTGCTCCCACTT GAGACAACAAGGCATGTATCTATGATAACTATTACCCTTTC AAAGAAGGAGCTGGACACATCCTCCATCGGATATCAATCTCCGTTGCCTGCTGATAAGGTTAAGCCTTTGGTTGAATACGAGAACGAAGAAGATGCTCCCTCACCTGCTGGCCGAGGGAGAGGCCGTGGTGGTCAAGGTCGTGGAAGGGGAAGAGGCAGAGGCACACGTGGAAATGGTTACATGGACTATGCTGATGGTGGATGGGAGGATGACCATGCTCCTCCTGCATATGCGGGCAACGGGTACACCCGTGGAAGAGGGCGTGGTTTTAGGGGCCGTGGCAGGAGAGGTGGCGGCTATGGAGCACAACCTGATTATCAGCAAGATGGAGGATACTATGATGAGGCACCAGTTCACGCGCCGCCCCGAGGCCGTGGTCGTGGTCGAGGCCGTGGGAGAGGCCCGGTCCGAGGTAGAGGACGCGGTGGCAACGTCAATGGCGTTATGCATGCTACTGCAGTTGGCGCCTAAGCTGGCTGCTGCTATTCCAAAGCTGTTGTTTGTTGGATGCCTGCTCCAAGTATGAAGATGTATCATCTGTGTTGTTTATGGGTTAACACCATACTCTGTATAAGCTTGACA TTCTGTTAGAATGCTGCCGGATTTTGATTTTTAACTAGGTTTGTAGGATAGTCTCTATAATGTTTGTTTTTCTTCCAGTAGTAGTTGCAAACTAATTGTAGTGTTCAG TTGGTAAAGGTTTAGAGCAGTGCATTCTTTCAATTTTTATATAAACCGAAATCCTGTTGCCATCTTATAATGTGCCAGCTTCAAATAGTGAACGCGCAAATGCAG             ]
[+] EMBL C91862               [         GCCACCCCCACCGCCGCAGCATCGCCGACGAGCTAGCCCGCCGCCGCTCGAGCGCAAGTTGAGGAGAGGAGGGATGGATCGGTACCAGAGGGTGGAGAAGCCGAGGGAGGAGGCGCCCATCAAGGAGAACGAGATCCGCATCACCACGCAGGGGAGGATGCGCAACTACANCANCTACGCGACCACCTTTGCTCCAGGATAAAGGTTCCGATGAAGTTGTATT AAGGCAATNGGGAGGGCAAT AACAAAACTNTGATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL C98672               [             CCCCCACCGCCGCAGCATCGCCGACGAGCTAGCCCGCCGCCGCTCGAGCGCAAGTTGAGGAGAGGAGGGATGGATCGGTACCAGAGGGTGGAGAAGCCGAGGGAGGAGGCGCCCATCAAGGAGAACGAGATCCGCATCACCACGCAGGGGAGGATGCGCAACTACATCACCTACGCGACCACC TTGCTCCAGGATAAAGGTTCCGATGAAGTTGTATTCAAGGCAATGGGGAGGGCAATCAACAAAACTGTGATGATTGCAGAGN TGATCAAGAGAAGAATTGTTGGTCTNCACCAAAACANCACCACTGGATCTACTTGATATCACTGATATG TGGGAGCCACTGGAGGAAGGTTTGCTTCCACTT GAGACAACAAGGCATGTATCTATGATAACTATTACCCTTTCAAAAGAAGGAGCTTGACACATCCTCCATCGGta                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AU162299             [              naCCACCGCCGNAACATCGCCGACGAACTANCCCGCCGCCGNTCGAGNGAAAGTTGAGNAGANGAGGGATGGATCGGTACCAGAGGGTGGAGAANCCGAGGGANGAGGCGCCCATCAAGGAGAACGAGATCCGCATCACCACGCAGGGGAGGATGCGCAACTACATCACCTACGCGACCACC TTGCTCCAGGATAAAGGTTCCGATGAAGTTGTATTCAAGGCAATGGGGAGGGCAATCAACAAAACTGTGATGATTGCAGAGCTTGATCAAGAGAAGATTTTTTGGTCTCCACCAAAACACCACCACTGGGTCTAC TGATATCACTGATATGTTGGGA CCCTTGGGGGAA GTTTGTTCCCct                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL C27068               [                           GCATCGCCGACGAGCTAGCCCGCCGCCGCTCGAGCGCAAGTTGAGGAGAGGAGGGATGGATCGGTACCAGAGGGTGGAGAAGCCGAGGGAGGAGGCGCCCATCAAGGAGAACGAGATCCGCATCACCACGCAGGGGAGGATGCGCAACTACATCACCTACGCGACCACC TTGCTCCAGGATAAAGGTTCCGATGAAGTTGTATTCAAGGCAATGGGGAGGGCAATCAAC  AACTGTNATGATTGCAGAGC TGATCAAGAGAAGAATTGTTGGTCTNCACCAAAACACCACCACTGGATCTAC TGATATCACTGATATG TGGGAGCCACTTGAGGAAGGCTTTCTTCCACTTNNGGACAACAAGGCATGTATCTATGATAACTATTACCCTTTC AAAGAAGGAGCTTGACAAATCCTCCATCGGGTATTAATTTCCGTTGCCTTCTGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AU085854             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GGAAGAGCCCNTGTTGGTCAA GTCNTGGAAGGGGAAGAGGCAGAGGCACACGTGGAAATGGTTACATGGACTATGCTGATGGTGGATGGGAGGATGACCATGCTCCTCCTGCATATGCGGGCAACGGGTACACCCGTGGAAGAGGGCGTGGTTTTAGGGGCCGTGGCAGGAGAGGTGGCGGCTATGGAGCACAACCTGATTATCAGCAAGATGGAGGATACTATGATGAGGCACCAGTTCACGCGCCGCCCCGAGGCCGTGGTCGTGGTCGAGGCCGTGGGAGAGGCCCGGTCCGAGGTAGAGGACGCGGTGGCAACGTCAATGGCGTTATGCATGCTACTGCAGTTGGCGCCTAAGCTGGCTGCTGCTATTCCAAAGCTGTTGTTTGTTGGATGCCTGCTCCAAGTATGAAGATGTATCATCTGTGTTGTTTATGGGTTAACACCATACTCTGTATAAGCTTGACA TTCTGTTAGAATGCTGCCGGATTTTGATTTTTAACTAGGTTTGTAGGATAGTCTCTATAATGTTTGTTTTTCTTCCAGTAGTAGTTGCAAACTAATTGTAGTGTTCAG TTGGTAAAGGTTTAGAGCAGTGCATTCTTTCAATTTTTATATAAACCGAAATCCTGTTGCCATCTTATAATGTGCCAGCTTCAAATAGTGAACGCGCAAATGCAGTTGGATTAAAAAA]
[+] EMBL AU108758             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AGAGGGCGTGGTTTTAGGGGCCGTGGCAGGAGAGGTGGCGGCTATGGAGCACAACCTGATTATCAGCAAGATGGAGGATACTATGATGAGGCACCAGTTCACGCGCCGCCCCGAGGCCGTGGTCGTGGTCGAGGCCGTGGGAGAGGCCCGGTCCGAGGTAGAGGACGCGGTGGCAACGTCAATGGCGTTATGCATGCTACTGCAGTTGGCGCCTAAGCTGGCTGCTGCTATTCCAAAGCTGTTGTTTGTTGGATGCCTGCTCCAAGTATGAAGATGTATCATCTGTGTTGTTTATGGGTTAACACCATACTCTGTATAAGCTTGACA TTCTGTTAGAATGCTGCCGGATTTTGATTTTTAACTAGGTTTGTAGGATAGTCTCTATAATGTTTGTTTTTCTTCCAGTAGTAGTTGCAAACTAATTGTAGTGTTCAG TTGGTAAAGGTTTAGAGCAGTGCATTCTTTCAATTTTTATATAAACCGAAATCCTGTTGCCATCTAAAAAa                                               ]
[+] EMBL BM420097             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TGTTTTTA GGGCC T GCAGGAGA GT GC GCTATGGGGCGCAACCTGATTATCAGCAAGATGGAGGATACTATGATGAGGCACCAGTTCACGC CCGCCCCGA GCCGTGGTCGTGGTCGA GCCGTGGGAGAGGCCCGGTCCGAGGTAGAGGAC CGGTGGCAACGTCAATGGCGTTATGCATGCTACTGCAGTTGGCGCCTAAGCTGGCTGCTGCTATTCCCAAGCTGTTGTTTGTTGGATGCCTGCTCCAAGTATGAAGATGTATCATCTGTGTTGTTTATGGGTTAACACCATACTCTGTATAAGCTTGACACTTCTGTTAGAATGCTGCCGGATTTTGATTTTTAACTAGGTTTGTAGGATAGTCTCTATAATGTTTGTTTTTCTTCCAGTAGTAGTT C AACTAATTGTAGTGTTCAGTTTGGTAAAGGTTTAGA C GTCCATTCTTTC ATTTTTATAAAAAa                                                                        ]




>consensus_13873#0
TCCTCCACCGCCACCCCCACCGCCGCAGCATCGCCGACGAGCTAGCCCGCCGCCGCTCGA
GCGCAAGTTGAGGAGAGGAGGGATGGATCGGTACCAGAGGGTGGAGAAGCCGAGGGAGGA
GGCGCCCATCAAGGAGAACGAGATCCGCATCACCACGCAGGGGAGGATGCGCAACTACAT
CACCTACGCGACCACCTTGCTCCAGGATAAAGGTTCCGATGAAGTTGTATTCAAGGCAAT
GGGGAGGGCAATCAACAAAACTGTGATGATTGCAGAGCTGATCAAGAGAAGAATTGTTGG
TCTCCACCAAAACACCACCACTGGATCTACTGATATCACTGATATGTGGGAGCCACTGGA
GGAAGGCTTGCTCCCACTTGAGACAACAAGGCATGTATCTATGATAACTATTACCCTTTC
AAAGAAGGAGCTTGACACATCCTCCATCGGATATCAATCTCCGTTGCCTGCTGATAAGGT
TAAGCCTTTGGTTGAATACGAGAACGAAGAAGATGCTCCCTCACCTGCTGGCCGAGGGAG
AGGCCGTGGTGGTCAAGGTCGTGGAAGGGGAAGAGGCAGAGGCACACGTGGAAATGGTTA
CATGGACTATGCTGATGGTGGATGGGAGGATGACCATGCTCCTCCTGCATATGCGGGCAA
CGGGTACACCCGTGGAAGAGGGCGTGGTTTTAGGGGCCGTGGCAGGAGAGGTGGCGGCTA
TGGAGCACAACCTGATTATCAGCAAGATGGAGGATACTATGATGAGGCACCAGTTCACGC
GCCGCCCCGAGGCCGTGGTCGTGGTCGAGGCCGTGGGAGAGGCCCGGTCCGAGGTAGAGG
ACGCGGTGGCAACGTCAATGGCGTTATGCATGCTACTGCAGTTGGCGCCTAAGCTGGCTG
CTGCTATTCCAAAGCTGTTGTTTGTTGGATGCCTGCTCCAAGTATGAAGATGTATCATCT
GTGTTGTTTATGGGTTAACACCATACTCTGTATAAGCTTGACATTCTGTTAGAATGCTGC
CGGATTTTGATTTTTAACTAGGTTTGTAGGATAGTCTCTATAATGTTTGTTTTTCTTCCA
GTAGTAGTTGCAAACTAATTGTAGTGTTCAGTTGGTAAAGGTTTAGAGCAGTGCATTCTT
TCAATTTTTATATAAACCGAAATCCTGTTGCCATCTTATAATGTGCCAGCTTCAAATAGT
GAACGCGCAAATGCAGTTGGATTAAAAAA

consensusID : consensus_13873#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 683
fasta sequence

                              [GCACGGGACAAGGGGANGAGGCTGAGGCACACGTGGAANNGGTTNCATGGACTGTGCTGNTGGTGGATGGNNGGNTGACCTGCTCCTCCTGCATATGCGGGCAACGNGTACACCCGTGGNAGAGGNCGTGNGTTTAGGGGCCGTGGCAGGAGAGGTGGCGGCCTATGGGGCGCAACCTGATTATCAGCAAGATGGAGGATACTATGATGAGGCACCAGTTCACGCGCCGCCCCGAGGCCGNGGTCGAGGTCGAGGCCGTGGGAGAGGCCCGGTCCGAGGTAGAGGACGCAGTGGCANCGTCAATGGCGTTATGCATGCTACTGCAAGTTGGCGCCTAAGCTGGCTGCTGCTATTCCAAAGCTGTTGTTTGTTGGATGCCTGCTCCAAGTATGAANATGTATCATCTGNGTTGTTTATGGNTTAACACCATACTCTGTATAAGCTNGACGTTCTGTTAGAATGCTGCCGGATTTTGATTTTTAACTAGGTTTGTAGGATAGGCTCTATAATGTTTGCTNTTCTTCCAGNAGTAGTTGCAAACTAATTGTAGCGCNCAGCTGNTAAAGGTTTATAGCAGTGCATTCTTTCAATTTTTATATAAACCAAAATCCTGTTGCCATCTTANAATGTGCCAGCCTTCAAATAGTGAACNCGCAAGNGCAGATTGGATTTTCAAAAAAAAA]

[+] EMBL CA764993             [GCACGGGACAAGGGGANGAGGCTGAGGCACACGTGGAANNGGTTNCATGGACTGTGCTGNTGGTGGATGGNNGGNTGACCTGCTCCTCCTGCATATGCGGGCAACGNGTACACCCGTGGNAGAGGNCGTGNGTTTAGGGGCCGTGGCAGGAGAGGTGGCGGCCTATGGGGCGCAACCTGATTATCAGCAAGATGGAGGATACTATGATGAGGCACCAGTTCACGCGCCGCCCCGAGGCCGNGGTCGAGGTCGAGGCCGTGGGAGAGGCCCGGTCCGAGGTAGAGGACGCAGTGGCANCGTCAATGGCGTTATGCATGCTACTGCAAGTTGGCGCCTAAGCTGGCTGCTGCTATTCCAAAGCTGTTGTTTGTTGGATGCCTGCTCCAAGTATGAANATGTATCATCTGNGTTGTTTATGGNTTAACACCATACTCTGTATAAGCTNGACGTTCTGTTAGAATGCTGCCGGATTTTGATTTTTAACTAGGTTTGTAGGATAGGCTCTATAATGTTTGCTNTTCTTCCAGNAGTAGTTGCAAACTAATTGTAGCGCNCAGCTGNTAAAGGTTTATAGCAGTGCATTCTTTCAATTTTTATATAAACCAAAATCCTGTTGCCATCTTANAATGTGCCAGCCTTCAAATAGTGAACNCGCAAGNGCAGATTGGATTTTCAAAAAAAAA]




>consensus_13873#1
GCACGGGACAAGGGGANGAGGCTGAGGCACACGTGGAANNGGTTNCATGGACTGTGCTGN
TGGTGGATGGNNGGNTGACCTGCTCCTCCTGCATATGCGGGCAACGNGTACACCCGTGGN
AGAGGNCGTGNGTTTAGGGGCCGTGGCAGGAGAGGTGGCGGCCTATGGGGCGCAACCTGA
TTATCAGCAAGATGGAGGATACTATGATGAGGCACCAGTTCACGCGCCGCCCCGAGGCCG
NGGTCGAGGTCGAGGCCGTGGGAGAGGCCCGGTCCGAGGTAGAGGACGCAGTGGCANCGT
CAATGGCGTTATGCATGCTACTGCAAGTTGGCGCCTAAGCTGGCTGCTGCTATTCCAAAG
CTGTTGTTTGTTGGATGCCTGCTCCAAGTATGAANATGTATCATCTGNGTTGTTTATGGN
TTAACACCATACTCTGTATAAGCTNGACGTTCTGTTAGAATGCTGCCGGATTTTGATTTT
TAACTAGGTTTGTAGGATAGGCTCTATAATGTTTGCTNTTCTTCCAGNAGTAGTTGCAAA
CTAATTGTAGCGCNCAGCTGNTAAAGGTTTATAGCAGTGCATTCTTTCAATTTTTATATA
AACCAAAATCCTGTTGCCATCTTANAATGTGCCAGCCTTCAAATAGTGAACNCGCAAGNG
CAGATTGGATTTTCAAAAAAAAA

consensusID : consensus_13873#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 617
fasta sequence

                              [AGCATCGCCGACGAGCTAGCCCGCCGCCGCTCGAGCGCAAGTTGAGGAGAGGAGGGATGGATCGGTACCAGAGGGTGGAGAAGCCGAGGGAGGAGGCGCCCATCAAGGAGAACGAGATCCGCATCACCACGCAGGGGAGGATGCGCAACTACATCACCTACGCGACCACCTTGCTCCAGGATAAAGGTTCCGATGAAGTTGTATTCAAGGCAATGGGGAGGGCAATCAACAAAACTGTGATGATTGCAGAGCTGATCAAGGTACCTATGGTTGCTCCTTGTAAACACTACTTTTGACATTTTTTAAGTGTTGGATTCTCCTTTGTTCTCCAGAGAAGAATTGTTGGTCTCCACCAAAACACCACCACTGGATCTACTGATATCACTGATATGTGGGAGCCACTGGAGGAAGGCTTGCTCCCACTTGAGACAACAAGGCATGTATGTATGATAACTATTACCCTTTCAAAGAAGGAGCTGGACACATGCTGCATGGNATATGAGTCTGCGGTGCCTGCTGATAAGGGTAAGGCTTTGGGTGAATACGACAACGAACAAGATGCTGGCTGACCTGGTGCGCGAGCGACAGGTCGCCTGTGATGGGCGTCGGTTAGGTGG]

[+] EMBL CA757104             [AGCATCGCCGACGAGCTAGCCCGCCGCCGCTCGAGCGCAAGTTGAGGAGAGGAGGGATGGATCGGTACCAGAGGGTGGAGAAGCCGAGGGAGGAGGCGCCCATCAAGGAGAACGAGATCCGCATCACCACGCAGGGGAGGATGCGCAACTACATCACCTACGCGACCACCTTGCTCCAGGATAAAGGTTCCGATGAAGTTGTATTCAAGGCAATGGGGAGGGCAATCAACAAAACTGTGATGATTGCAGAGCTGATCAAGGTACCTATGGTTGCTCCTTGTAAACACTACTTTTGACATTTTTTAAGTGTTGGATTCTCCTTTGTTCTCCAGAGAAGAATTGTTGGTCTCCACCAAAACACCACCACTGGATCTACTGATATCACTGATATGTGGGAGCCACTGGAGGAAGGCTTGCTCCCACTTGAGACAACAAGGCATGTATGTATGATAACTATTACCCTTTCAAAGAAGGAGCTGGACACATGCTGCATGGNATATGAGTCTGCGGTGCCTGCTGATAAGGGTAAGGCTTTGGGTGAATACGACAACGAACAAGATGCTGGCTGACCTGGTGCGCGAGCGACAGGTCGCCTGTGATGGGCGTCGGTTAGGTGG]
[-] EMBL AW070004             [                                                                                                                                                                                                                                                              gccgAGGTACCTATGGTTGCTCCTTGTAAACACTACTTTTGACATTTTTTAAGTGTTGGATTCTCCTTTGTTCTCCAGAGAAGAATTGTTGGTCTCCACCAAAACACCACCACTGGATCTACTGATATCACTGATATGTGGGAGCCACTGGAGGAAGGCTTGCTCCCACTTGAGACAACAAGGCATGTATCTATGATAACTATTACCCTTTCAAAGAAGGAGCTGGACACATCCTCCATCGGATATCAATCTCCGTTGCCTGCTGATAAGGTTAAGCCTTTGGTTGAATACGAGAACGAAGAAGAT                                                         ]




>consensus_13873#2
AGCATCGCCGACGAGCTAGCCCGCCGCCGCTCGAGCGCAAGTTGAGGAGAGGAGGGATGG
ATCGGTACCAGAGGGTGGAGAAGCCGAGGGAGGAGGCGCCCATCAAGGAGAACGAGATCC
GCATCACCACGCAGGGGAGGATGCGCAACTACATCACCTACGCGACCACCTTGCTCCAGG
ATAAAGGTTCCGATGAAGTTGTATTCAAGGCAATGGGGAGGGCAATCAACAAAACTGTGA
TGATTGCAGAGCTGATCAAGGTACCTATGGTTGCTCCTTGTAAACACTACTTTTGACATT
TTTTAAGTGTTGGATTCTCCTTTGTTCTCCAGAGAAGAATTGTTGGTCTCCACCAAAACA
CCACCACTGGATCTACTGATATCACTGATATGTGGGAGCCACTGGAGGAAGGCTTGCTCC
CACTTGAGACAACAAGGCATGTATGTATGATAACTATTACCCTTTCAAAGAAGGAGCTGG
ACACATGCTGCATGGNATATGAGTCTGCGGTGCCTGCTGATAAGGGTAAGGCTTTGGGTG
AATACGACAACGAACAAGATGCTGGCTGACCTGGTGCGCGAGCGACAGGTCGCCTGTGAT
GGGCGTCGGTTAGGTGG

consensusID : consensus_13873#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 357
fasta sequence

                              [NTGGCAACGTCAATGGCGTTATGCATGCTACTGCAGTTGGCGCCTAAGCTGGCTGNTGCTATTCCAAAGCTGTTGTTTGTTGGATGCCTGCTCCAAGTATGAAGATGTNTCATCTGTGTTGTTTATGGGTTAACACCATACTCTGTATAAGCTTGACATTNTGTTAGAATGCTGCCGGATTTTGATTTTTAACTAGGTTTGTAGGATAGTCTCTATAATGTTTGTTTTTCTTCCAGTAGTAGTTGCAAACTAATTGTAGTGTTCAGTTGGTAAAGGTTTAGAGCAGTGCATTCTTTCAATTTTTATATAAACCGAAATCCTGTTGCNATNTTAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU030444             [NTGGCAACGTCAATGGCGTTATGCATGCTACTGCAGTTGGCGCCTAAGCTGGCTGNTGCTATTCCAAAGCTGTTGTTTGTTGGATGCCTGCTCCAAGTATGAAGATGTNTCATCTGTGTTGTTTATGGGTTAACACCATACTCTGTATAAGCTTGACATTNTGTTAGAATGCTGCCGGATTTTGATTTTTAACTAGGTTTGTAGGATAGTCTCTATAATGTTTGTTTTTCTTCCAGTAGTAGTTGCAAACTAATTGTAGTGTTCAGTTGGTAAAGGTTTAGAGCAGTGCATTCTTTCAATTTTTATATAAACCGAAATCCTGTTGCNATNTTAAAAAAAAAAAAAAAAAA       ]
[+] EMBL AU166146             [       CGTCAATGGCGTTATGCATGCTACTGCAGTTGGCGCCTAAGCTGGCTGCTGCTATTCCAAAGCTGNTGTTTGTTGGATGCCTGCTCCAAGTATGAAGATGTATCATCTGTGTTGTTTATGGGTTAACACCATACTCTGTATAAGCTTGACATTCTGTTAGAATGCTGCCGGATTTTGATTTTTAACTAGGTTTGTAGGATAGTCTCTATAATGTTTGTTTTTCTTCCAGTAGTAGTTGCAAACTAATTGTAGTGTTCAGTTGGTAAAGGTTTAGAGCAGTGCATTCTTTCAATTTTTATATAAACCGAAATCCTGTTGCCATCAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_13873#3
NTGGCAACGTCAATGGCGTTATGCATGCTACTGCAGTTGGCGCCTAAGCTGGCTGNTGCT
ATTCCAAAGCTGTTGTTTGTTGGATGCCTGCTCCAAGTATGAAGATGTNTCATCTGTGTT
GTTTATGGGTTAACACCATACTCTGTATAAGCTTGACATTNTGTTAGAATGCTGCCGGAT
TTTGATTTTTAACTAGGTTTGTAGGATAGTCTCTATAATGTTTGTTTTTCTTCCAGTAGT
AGTTGCAAACTAATTGTAGTGTTCAGTTGGTAAAGGTTTAGAGCAGTGCATTCTTTCAAT
TTTTATATAAACCGAAATCCTGTTGCNATNTTAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_13873#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 249
fasta sequence

                              [GTATAAGCTTGACATTCTGTTAGAATGCTGCCGGATTTTGATTTTTAACTAGGTTTGTAGGATAGTCTCTATAATGTTTGTTTTTCTTCCAGTAGTAGTTGCAAACTAATTGTAGTGTTCAGTTGGTAAAGGTTTAGAGCAGTGCATTCTTTCAATTTTTATATAAACCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAA]

[+] EMBL CF328232             [GTATAAGCTTGACATTCTGTTAGAATGCTGCCGGATTTTGATTTTTAACTAGGTTTGTAGGATAGTCTCTATAATGTTTGTTTTTCTTCCAGTAGTAGTTGCAAACTAATTGTAGTGTTCAGTTGGTAAAGGTTTAGAGCAGTGCATTCTTTCAATTTTTATATAAACCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAA]




>consensus_13873#4
GTATAAGCTTGACATTCTGTTAGAATGCTGCCGGATTTTGATTTTTAACTAGGTTTGTAG
GATAGTCTCTATAATGTTTGTTTTTCTTCCAGTAGTAGTTGCAAACTAATTGTAGTGTTC
AGTTGGTAAAGGTTTAGAGCAGTGCATTCTTTCAATTTTTATATAAACCGAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGA
AAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13873#3      ------------------------------------------------------------
consensus_13873#4      ------------------------------------------------------------
consensus_13873#1      ------------------------------------------------------------
consensus_13873#0      TCCTCCACCGCCACCCCCACCGCCGCAGCATCGCCGACGAGCTAGCCCGCCGCCGCTCGA 60
consensus_13873#2      ------------------------------------------------------------
                                                                                   

consensus_13873#3      ------------------------------------------------------------
consensus_13873#4      ------------------------------------------------------------
consensus_13873#1      ------------------------------------------------------------
consensus_13873#0      GCGCAAGTTGAGGAGAGGAGGGATGGATCGGTACCAGAGGGTGGAGAAGCCGAGGGAGGA 120
consensus_13873#2      ------------------------------------------------------------
                                                                                   

consensus_13873#3      ------------------------------------------------------------
consensus_13873#4      ------------------------------------------------------------
consensus_13873#1      ------------------------------------------------------------
consensus_13873#0      GGCGCCCATCAAGGAGAACGAGATCCGCATCACCACGCAGGGGAGGATGCGCAACTACAT 180
consensus_13873#2      ------------------------------------------------------------
                                                                                   

consensus_13873#3      ------------------------------------------------------------
consensus_13873#4      ------------------------------------------------------------
consensus_13873#1      ------------------------------------------------------------
consensus_13873#0      CACCTACGCGACCACCTTGCTCCAGGATAAAGGTTCCGATGAAGTTGTATTCAAGGCAAT 240
consensus_13873#2      ------------------------------------------------------------
                                                                                   

consensus_13873#3      ------------------------------------------------------------
consensus_13873#4      ------------------------------------------------------------
consensus_13873#1      ------------------------------------------------------------
consensus_13873#0      GGGGAGGGCAATCAACAAAACTGTGATGATTGCAGAGCTGATCAAGAGAAGAATTGTTGG 300
consensus_13873#2      ------------------------------------------------------------
                                                                                   

consensus_13873#3      ------------------------------------------------------------
consensus_13873#4      ------------------------------------------------------------
consensus_13873#1      ------------------------------------------------------------
consensus_13873#0      TCTCCACCAAAACACCACCACTGGATCTACTGATATCACTGATATGTGGGAGCCACTGGA 360
consensus_13873#2      ------------------------------------------------------------
                                                                                   

consensus_13873#3      ------------------------------------------------------------
consensus_13873#4      ------------------------------------------------------------
consensus_13873#1      ------------------------------------------------------------
consensus_13873#0      GGAAGGCTTGCTCCCACTTGAGACAACAAGGCATGTATCTATGATAACTATTACCCTTTC 420
consensus_13873#2      ------------------------------------------------------------
                                                                                   

consensus_13873#3      ------------------------------------------------------------
consensus_13873#4      ------------------------------------------------------------
consensus_13873#1      ------------------------------------------------------------
consensus_13873#0      AAAGAAGGAGCTTGACACATCCTCCATCGGATATCAATCTCCGTTGCCTGCTGATAAGGT 480
consensus_13873#2      ------------------------------------------------------------
                                                                                   

consensus_13873#3      ------------------------------------------------------------
consensus_13873#4      ------------------------------------------------------------
consensus_13873#1      ------------------------------------------------------------
consensus_13873#0      TAAGCCTTTGGTTGAATACGAGAACGAAGAAGATGCTCCCTCACCTGCTGGCCGAGGGAG 540
consensus_13873#2      ------------------------------------------------------------
                                                                                   

consensus_13873#3      ------------------------------------------------------------
consensus_13873#4      ------------------------------------------------------------
consensus_13873#1      ---------------GCACGGGACAAGGGGANGAGGCTGAGGCACACGTGGAANNGGTTN 45
consensus_13873#0      AGGCCGTGGTGGTCAAGGTCGTGGAAGGGGAAGAGGCAGAGGCACACGTGGAAATGGTTA 600
consensus_13873#2      ------------------------------------------------------------
                                                                                   

consensus_13873#3      ------------------------------------------------------------
consensus_13873#4      ------------------------------------------------------------
consensus_13873#1      CATGGACTGTGCTGNTGGTGGATGGNNGGNTGACC-TGCTCCTCCTGCATATGCGGGCAA 104
consensus_13873#0      CATGGACTATGCTGATGGTGGATGGGAGGATGACCATGCTCCTCCTGCATATGCGGGCAA 660
consensus_13873#2      --------------AGCATCGCCGACGAGCTAGCCCGCCGCCGCTCGAGCGCAAGTTGAG 46
                                                                                   

consensus_13873#3      ------------------------------------------------------------
consensus_13873#4      ------------------------------------------------------------
consensus_13873#1      CGNGTACACCCGTGGNAGAGGNCGTGNGTTTAGGGGCCGTGGCAGGAGAGGTGGCGGCCT 164
consensus_13873#0      CGGGTACACCCGTGGAAGAGGGCGTGGTTTTAGGGGCCGTGGCAGGAGAGGTGGCGGC-T 719
consensus_13873#2      GAGAGGAGGGATGGATCGGTACCAGAGGGTGGAGAAGCCGAGGGAGGAGGCGCCCATCAA 106
                                                                                   

consensus_13873#3      ------------------------------------------------------------
consensus_13873#4      ------------------------------------------------------------
consensus_13873#1      ATGGGGCGCAACCTGATTATCAGCAAGATGGAGGATACTATGATGAGGCACCAGTTCACG 224
consensus_13873#0      ATGGAGCACAACCTGATTATCAGCAAGATGGAGGATACTATGATGAGGCACCAGTTCACG 779
consensus_13873#2      GGAGAACGAGATCCGCATCACCACGCAGGGGAGGATGCGCAACTACATCACCTACGCGAC 166
                                                                                   

consensus_13873#3      ------------------------------------------------------------
consensus_13873#4      ------------------------------------------------------------
consensus_13873#1      CGCCGC-CCCGAGGCCGNGGTCGAGGTCGAGGCCGTGGGAGAGGCCCGGTCCGAGGTAGA 283
consensus_13873#0      CGCCGC-CCCGAGGCCGTGGTCGTGGTCGAGGCCGTGGGAGAGGCCCGGTCCGAGGTAGA 838
consensus_13873#2      CACCTTGCTCCAGGATAAAGGTTCCGATGAAGTTGTATTCAAGGCAATGGGGAGGGCAAT 226
                                                                                   

consensus_13873#3      -------NTGGCAACGTCAATGGCGTTATGCATGCTACTGCA-GTTGGCGCCTAAGCTGG 52
consensus_13873#4      ------------------------------------------------------------
consensus_13873#1      GGACGCAGTGGCANCGTCAATGGCGTTATGCATGCTACTGCAAGTTGGCGCCTAAGCTGG 343
consensus_13873#0      GGACGCGGTGGCAACGTCAATGGCGTTATGCATGCTACTGCA-GTTGGCGCCTAAGCTGG 897
consensus_13873#2      CAACAAAACTGTGATGATTGCAGAGCTGATCAAGGTACCTATGGTTGCTCCTTGTAAACA 286
                                                                                   

consensus_13873#3      CTGNTGCTATTCCAAAGCTGTTGTTTGTTGGATGCCTGCTCCAAGTATGAAGATGTNTCA 112
consensus_13873#4      ------------------------------------------------------------
consensus_13873#1      CTGCTGCTATTCCAAAGCTGTTGTTTGTTGGATGCCTGCTCCAAGTATGAANATGTATCA 403
consensus_13873#0      CTGCTGCTATTCCAAAGCTGTTGTTTGTTGGATGCCTGCTCCAAGTATGAAGATGTATCA 957
consensus_13873#2      CTACT----TTTGACATTTTTTAAGTGTTGGATTCTCCTTTGTTCTCCAGAGAAGAATTG 342
                                                                                   

consensus_13873#3      TCTGTGTTGTTTATGGGTTAACACCATACTCTGTATAAGCTTGACATTNTGTTAGAAT-G 171
consensus_13873#4      --------------------------------GTATAAGCTTGACATTCTGTTAGAAT-G 27
consensus_13873#1      TCTGNGTTGTTTATGGNTTAACACCATACTCTGTATAAGCTNGACGTTCTGTTAGAAT-G 462
consensus_13873#0      TCTGTGTTGTTTATGGGTTAACACCATACTCTGTATAAGCTTGACATTCTGTTAGAAT-G 1016
consensus_13873#2      TTGGTCTCCACCAAAACACCACCACTGGATCTAC-TGATATCACTGATATGTGGGAGCCA 401
                                                          * *  *      * ***  **    

consensus_13873#3      CTGCCGGATT-TTGATTTTTAACTAGGTTTGTAGGATA-GTCTCTATAATGTTTGTTTTT 229
consensus_13873#4      CTGCCGGATT-TTGATTTTTAACTAGGTTTGTAGGATA-GTCTCTATAATGTTTGTTTTT 85
consensus_13873#1      CTGCCGGATT-TTGATTTTTAACTAGGTTTGTAGGATA-GGCTCTATAATGTTTGCTNTT 520
consensus_13873#0      CTGCCGGATT-TTGATTTTTAACTAGGTTTGTAGGATA-GTCTCTATAATGTTTGTTTTT 1074
consensus_13873#2      CTGGAGGAAGGCTTGCTCCCACTTGAGACAACAAGGCATGTATGTATGATAACTATTACC 461
                       ***  ***    *   *   *  *  *     * *  * *  * *** **   *  *   

consensus_13873#3      CTTCCA--GTAGTAGTTGCAAACTAATTGTAGTGTTCAGTTGGTAAAGGTTTAGAGCAGT 287
consensus_13873#4      CTTCCA--GTAGTAGTTGCAAACTAATTGTAGTGTTCAGTTGGTAAAGGTTTAGAGCAGT 143
consensus_13873#1      CTTCCA--GNAGTAGTTGCAAACTAATTGTAGCGCNCAGCTGNTAAAGGTTTATAGCAGT 578
consensus_13873#0      CTTCCA--GTAGTAGTTGCAAACTAATTGTAGTGTTCAGTTGGTAAAGGTTTAGAGCAGT 1132
consensus_13873#2      CTTTCAAAGAAGGAGCTGGACACATGCTGCATGGNATATGAGTCTGCGGTGCCTGCTGAT 521
                       *** **  * ** ** ** * **    ** *  *   *   *     ***         *

consensus_13873#3      GCATTCTTTCAATTTTTATATAAACCGAAATCCTGTTGCNATNTTAAAAAAAAAAAAAAA 347
consensus_13873#4      GCATTCTTTCAATTTTTATATAAACCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 203
consensus_13873#1      GCATTCTTTCAATTTTTATATAAACCAAAATCCTGTTGCCATCTTANAATGTGCCAGCCT 638
consensus_13873#0      GCATTCTTTCAATTTTTATATAAACCGAAATCCTGTTGCCATCTTATAATGTGCCAGC-T 1191
consensus_13873#2      AAGGG---TAAGGCTTTGGGTGAATACGACAACGAACAAGATGCTGGCTGACCTGGTGCG 578
                               * *   ***   * **    *           *                   

consensus_13873#3      AAAAAAAAAA------------------------------------ 357
consensus_13873#4      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAA 249
consensus_13873#1      TCAAATAGTGAACNCGCAAGNGCAGATTGGATTTTCAAAAAAAAA- 683
consensus_13873#0      TCAAATAGTGAACGCGCAAATGCAGTTGGATTAAAAAA-------- 1229
consensus_13873#2      CGAGCGACAGGTCGCCTGTGATGGGCGTCGGTTAGGTGG------- 617
                         *   *