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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13880#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1222 fasta sequence
[CCCCTCCCCTTCCCCCCTCCCCTCCGGCGAACTCCGAGCTCTTCCCGGTGAGCGCCGCCGATTCGGCCGGAGAGGCTCGCCGGAGTCGCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAGCGACCGGGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTATTTGGCATCAAAGGTGGAAGAGAGCACAGTGCAAGCAAGACTTCTTGTCTTTTACATAAAAAAGATGTGTGCTTCTGATGAGAAGTACCGGTTTGAAATCAAGGATATCCTTGAAATGGAAATGAAGCTCCTGGAGGCACTTGACTATTATTTAGTTGTTTACCACCCATATCGTCCTCTTTTACAGTTATTGCAGGATGCTGGCATAACAGATCTGACACAATTTGCCTGGGGAATTGTCAATGATACTTACAAGATGGATCTTATTCTCATACACCCACCATATATGATAGCATTAGCCTGCATCTACATTGCAAGCGTTCTTAAAGACAAGGACATAACTCTGTGGTTTGAAGAGCTCCGTGTTGACATGAACATTGTCAAGAATATCTCGATGGAAATTTTGGACTTCTATGACACCTAC-AAGATTGATCCTCAAAGAGGGCTCCCAGAGGACAAAATAGCCCCTGTGATGAACAAACTGCCTTCAAAGGCCTAAAGCAGACTGAGCCCTAGTTCAGTTGTTATCAGTCTGAGCGTCAAATCACCTTATGCTCGTACAACAGGAAATATGTGTCACCTTCCTTGGAGAACTTTATATTTCAAAGCC--ATATATATATATAGTATCAGAATTCAGAATTGCCCCTAACGAACGATTTAATTCAGAATTCCGAACTATATACAGCTGTTCCTGTTGCAGCA-GCTTGCGAGGCAAATCATTTACAATGAAGATCCCAACGGGTTGGGAATGGTCTGTATCTGTATGTGTTTTTGATGTGTAAAAAAAAACATGGCTTTGGTACTATTTAGTTTCTATAGCAAATGAAATCCTGAAAAATTCT]
[+] EMBL AK072415 [CCCCTCCCCTTCCCCCCTCCCCTCCGGCGAACTCCGAGCTCTTCCCGGTGAGCGCCGCCGATTCGGCCGGAGAGGCTCGCCGGAGTCGCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAGCGACCGGGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTATTTGGCATCAAAGGTGGAAGAGAGCACAGTGCAAGCAAGACTTCTTGTCTTTTACATAAAAAAGATGTGTGCTTCTGATGAGAAGTACCGGTTTGAAATCAAGGATATCCTTGAAATGGAAATGAAGCTCCTGGAGGCACTTGACTATTATTTAGTTGTTTACCACCCATATCGTCCTCTTTTACAGTTATTGCAGGATGCTGGCATAACAGATCTGACACAATTTGCCTGGGGAATTGTCAATGATACTTACAAGATGGATCTTATTCTCATACACCCACCATATATGATAGCATTAGCCTGCATCTACATTGCAAGCGTTCTTAAAGACAAGGACATAACTCTGTGGTTTGAAGAGCTCCGTGTTGACATGAACATTGTCAAGAATATCTCGATGGAAATTTTGGACTTCTATGACACCTAC AAGATTGATCCTCAAAGAGGGCTCCCAGAGGACAAAATAGCCCCTGTGATGAACAAACTGCCTTCAAAGGCCTAAAGCAGACTGAGCCCTAGTTCAGTTGTTATCAGTCTGAGCGTCAAATCACCTTATGCTCGTACAACAGGAAATATGTGTCACCTTCCTTGGAGAACTTTATATTTCAAAGCC ATATATATATATAGTATCAGAATTCAGAATTGCCCCTAACGAACGATTTAATTCAGAATTCCGAACTATATACAGCTGTTCCTGTTGCAGCA GCTTGCGAGGCAAATCATTTACAATGAAGATCCCAACGGGTTGGGAATGGTCTGTATCTGTATGTGTTTTTGATGTGTAAAAAAAAACATGGCTTTGGTACTATTTAGTTTCTATAGCAAATGAAATCCTGAAAAATTC ]
[+] EMBL OSD925 [ CCCCTCCGGCGAACTCCGAGCTCTTCCCGGTGAGCGCCGCCGATTCGGCCGGAGAGGCTCGCCGGAGTCGCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAGCGACCGGGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTATTTGGCATCAAAGGTGGAAGAGAGCACAGTGCAAGCAAGACTTCTTGTCTTTTACATAAAAAAGATGTGTGCTTCTGATGAGAAGTACCGGTTTGAAATCAAGGATATCCTTGAAATGGAAATGAAGCTCCTGGAGGCACTTGACTATTATTTAGTTGTTTACCACCCATATCGTCCTCTTTTACAGTTATTGCAGGATGCTGGCATAACAGATCTGACACAATTTGCCTGGGGAATTGTCAATGATACTTACAAGATGGATCTTATTCTCATACACCCACCATATATGATAGCATTAGCCTGCATCTACATTGCAAGCGTTCTTAAAGACAAGGACATAACTCTGTGGTTTGAAGAGCTCCGTGTTGACATGAACATTGTCAAGAATATCTCGATGGAAATTTTGGACTTCTATGACACCTAC AAGATTGATCCTCAAAGAGGGCTCCCAGAGGACAAAATAGCCCCTGTGATGAACAAACTGCCTTCAAAGGCCTAAAGCAGACTGAGCCCTAGTTCAGTTGTTATCAGTCTGAGCGTCAAATCACCTTATGCTCGTACAACAGGAAATATGTGTCACCTTCCTTGGAGAACTTTATATTTCAAAGCC ATATATATATATAGTATCAGAATTCAGAATTGCCCCTAACGAACGATTTAATTCAGAATTCCGAACTATATACAGCTGTTCCTGTTGCAGCA GCTTGCGAGGCAAATCATTTACAATGAAGATCCCAACGGGTTGGGAATGGTCTGTATCTGTATGTGTTTTTGATGTGTAAAAAAAAACATGGCTTTGGTACTATTTAGTTTCTATAGCAAATGAAATCCTGAAAAATTCT]
[+] EMBL CB656502 [ TCCGAGCTCTTCCCGGTGAGCGCCGCCGATTCGGCCGGAGAGGCTCGCCGGAGTCGCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAGCGACCGGGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTATTTGGCATCAAAGGTGGAAGAGAGCACAGTGCAAGCAAGACTTCTTGTCTTTTACATAAAAAAGATGTGTGCTTCTGATGAGAAGTACCGGTTTGAAATCAAGGATATCCTTGAAATGGAAATGAAGCTCCTGGAGGCACTTGACTATTATTTAGTTGTTTACCACCCATATCGTCCTCTTTTACAGTTATTGCAGGATGCTGGCATAACAGATCTGACACAATTTGCCTGGGGAATTGTCAATGATACTTACAAGATGGATCTTATTCTCATACACCCACCATATATGATAGCATTAGCCTGCATCTACATTGCAAGCGTTCTTAAAGACAAGGACATAACTCTGTGGTTTGAAGAGCTCCGTGTTGACATGAACATTGTCAAGAATATCTCGATGGAAATTTTGGACTTCTATGACACCTAC AAGATTGATCCTC ]
[+] EMBL CA765583 [ cGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCATATCTGGCGATTGGCACAACAGGTGAAGGTTAGACAAAGGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGAAAGAGCATGACTGAATAGGATCCTCGTCTGGTAGCACCAACCTGTTTGTATTTGGCATCAAAGGTGGAAGAGAGCACAGTGCAAGCAAGACTTCTTGTCTTTTACATAAAAAAGATGTGTGCTTCTGATGAGAAGTACCGGTTTGAAATCAAGGATATCCTTGAAATGGAAATGAAGCTCCTGGAGGCACTTGACTATTATTTAGTTGTTTACCACCCATATCGTCCTCTTTTACAGTTATTGCAGGATGCTGGCATAACAGATCTGACACAATTTGCCTGGGGAATTGTCAATGATACTTACAAGATGGATCTTATTCTCATACACCCACCATATATGATAGCTTTAGCCTGCATCTACATTGCAAGCGTTCTTAAAGACAAGGACATAACTCTGTGGTTTGAAGAGCTCCGTGTTGACATGAACATTGTCAAGAATATCTCGATGGAAATTTTGGACTTCTATGACACCTACNAGGATTGATCCTCAAAGAGGGCTCCCAGAGGACAAAATAGCCCCTGTGATGAACAAACTGNCTTCAAAGGCCTAAAGCAGACTGAGCCCTAATTCAGTTGNTATCAGTCTGAGCGTCAAATCACCTTATGCTCGTACAACAGGAAATATGTGTCA NCNTGGAAAACNTTTTATTTCAATGNC ATATATA ]
[+] EMBL OS0589A [ GTTTGTATTTGGCATCAAAGGTGGAAGAGAGCACAGTGCAAGCAAGACTTCTTGTCTTTTACATAAAAAAGATGTGTGCTTCTGATGAGAAGTACCGGTTTGAAATCAAGGATATCCTTGAAATGGAAATGAAGCTCCTGGAGGCACTTGACTATTATTTAGTTGTTTACCACCCATATCGTCCTCTTTTACAGTTATTGCAGGATGCTGGCATAACAGATCTGACACAATTTGCCTGGGGAATTGTCAATGATACTTACAAGATGGATCTTATTCTCATACACCCACCATATATGATAGCATTAGCCTGCATCTACATTGCAAGCGTTCTTAAAGACAAGGACATAACTCTGTGGTTTG AGAGCTCCGTGTTGACATGAACATTGTCAGGANTATCTCGGTGGGAA TTTGGNCTTCTATGACACCTAC Aggtt ]
[-] EMBL CB656503 [ AAAGATGTGTGCTTCTGATGAGAAGTACCGGTTTGAAATCAAGGATATCCTTGAAATGGAAATGAAGCTCCTGGAGGCACTTGACTATTATTTAGTTGTTTACCACCCATATCGTCCTCTTTTACAGTTATTGCAGGATGCTGGCATAACAGATCTGACACAATTTGCCTGGGGAATTGTCAATGATACTTACAAGATGGATCTTATTCTCATACACCCACCATATATGATAGCATTAGCCTGCATCTACATTGCAAGCGTTCTTAAAGACAAGGACATAACTCTGTGGTTTGAAGAGCTCCGTGTTGACATGAACATTGTCAAGAATATCTCGATGGAAATTTTGGACTTCTATGACACCTAC AAGATTGATCCTCAAAGAGGGCTCCCAGAGGACAAAATAGCCCCTGTGATGAACAAACTGCCTTCAAAGGCCTAAAGCAGACTGAGCCCTAGTTCAGTTGTTATCAGTCTGAGCGTCAAATCACCTTATGCTCGTACAACAGGAAATATGTGTCACCTTCCTTGGAGAACTTTATATTTCAAAGCC ATATATATATATAGTATCAGAATTCAGAATTGCCCCTAACGAACGATTTAATTCAGAATTCCGAACTATATACAGCTGTTCCTGTTGCAGCA GCTTGCGAGGCAAATCATTTACAATGAAGATCCCAACGGGTTGGGAATGGTCTGTATCTGTATGTGTTTTTGATGTGTAAAAAAAAACATGGCTTTGGTACTAaaaaaaaga ]
[-] EMBL CB620409 [ ATGTGTGCTTCTGATGAGAAGTACCGGTTTGAAATCAAGGATATCCTTGAAATGGAAATGAAGCTCCTGGAGGCACTTGACTATTATTTAGTTGTTTACCACCCATATCGTCCTCTTTTACAGTTATTGCAGGATGCTGGCATAACAGATCTGACACAATTTGCCTGGGGAATTGTCAATGATACTTACAAGATGGATCTTATTCTCATACACCCACCATATATGATAGCTTTAGCCTGCATCTACATTGCAAGCGTTCTTAAAGACAAGGACATAACTCTGTGGTTTGAAGAGCTCCGTGTTGACATGAACATTGTCAAGAATATCTCGATGGAAATTTTGGACTTCTATGACACCTAC AAGATTGATCCTCAAAGAGGGCTCCCAGAGGACAAAATAGCCCCTGTGATGAACAAACTGCCTTCAAAGGCCTAAAGCAGACTGAGCCCTAGTTCAGTTGTTATCAGTCTGAGCGTCAAATCACCTTATGCTCGTACAACAGGAAATATGTGT CC CCTTGGAGAACTTTATATTTCAATGCCATATATATATATATAGTATCAGAATTCAGAATTGCCCCTAACGAACGATTTAATTCAGAATTCCGAACTATATACAGCTGTTCCTGTTGCAGCA GCTTGCGAGGCAAATCATTTACAATGAAGATCCCAACGGGTTGGGAATGGTCTGTATCTGTATGTGTTTTTGATGTGTAAAAAAAAAGATGGCTTTGGTACTAT ]
[-] EMBL CA305725 [ AAATCAAGGATATCCTTGAAATGGAAATGAAGCTCCTGGAGGCACTTGACTATTATTTAGTTGTTTACCACCCATATCGTCCTCTTTTACAGTTATTGCAGGATGCTGGCATAACAGATCTGACACAATTTGCCTGGGGAATTGTCAATGATACTTACAAGATGGATCTTATTCTCATACACCCACCATATATGATAGCTTTAGCCTGCATCTACATTGCAAGCGTTCTTAAAGACAAGGACATAACTCTGTGGTTTGAAGAGCTCCGTGTTGACATGAACATTGTCAAGAATATCTCGATGGAAATTTTGGACTTCTATGACACCTAC AAGATTGATCCTCAAAGAGGGCTCCCAGAGGACAAAATAGCCCCTGTGATGAACAAACTGCCTTCAAAGGCCTAAAGCAGACTGAGCCCTAGTTCAGTTGTTATCAGTCTGAGTGTCAAATCACCT ]
[+] EMBL BI809262 [ GAGAACTTTATATTTCAATGCCATATATATATATATAGTATCAGAATTCAGAATTGCCCCTAACGAACGATTTAATTCAGAATTCCGAACTATATACAGCTGTTCCTGTTGCAGCACGCTTGCGAGGCCAATCATTTACCATGAAGATCCCCACGGGTTGGGAATGGTCTGTATCTGTATGTGTTTTTGATGTGTAAAAAAAAACCTGGCTTTGGTACTAaaaaaaaaa ]
consensusID : consensus_13880#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 783 fasta sequence
[CCTTCCCCCCCTCAAGCGGCGAACTCCGAGCTCTTCCCGGTGAGCGCCGCCGATTCGGCCGGAGAGGCTCGCCGGAGTCGCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGGTAAGCGTCCAACCTCCCCCACGTTTCCCCCCCTCTCGATTCGGTTTCTTGGGCTGCGAATCCGTGAGCTGAGCTGCTGCTGATTTGGGGGGTGTTCGTTCGTGTGTGATCCCGCGGCGAGCGAGGGCAGCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAGCGACCGGGGCATCACGCCGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTATTTGGCATCAAAGGTGGAAGAGAGCACAGTGCAAGCAAGACTTCTTGTCTTTTACATAAAAAAGATGTGTGCTTCTGATGAGAAGTACCGGTTTGAAATCAAGGATATCCTTGAAATGGAAATGAAGCTCCTGGAGGCACTTGACTATTATTTAGTTGTTTACCACCCATATCGTCCTCTTTTACAGTTATTGCAGGATGCTGGCATAACAGATCTGACACAATTTGCCTGGGGAATTGTCAATGATACTTACAAGATGGATCTTATTCTCATACACCCAC]
[+] EMBL CB620408 [CCTTCCCCCCCTCAAGCGGCGAACTCCGAGCTCTTCCCGGTGAGCGCCGCCGATTCGGCCGGAGAGGCTCGCCGGAGTCGCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGGTAAGCGTCCAACCTCCCCCACGTTTCCCCCCCTCTCGATTCGGTTTCTTGGGCTGCGAATCCGTGAGCTGAGCTGCTGCTGATTTGGGGGGTGTTCGTTCGTGTGTGATCCCGCGGCGAGCGAGGGCAGCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAGCGACCGGGGCATCACGCCGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTATTTGGCATCAAAGGTGGAAGAGAGCACAGTGCAAGCAAGACTTCTTGTCTTTTACATAAAAAAGATGTGTGCTTCTGATGAGAAGTACCGGTTTGAAATCAAGGATATCCTTGAAATGGAAATGAAGCTCCTGGAGGCACTTGACTATTATTTAGTTGTTTACCACCCATATCGTCCTCTTTTACAGTTATTGCAGGATGCTGGCATAACAGATCTGACACAATTTGCCTGGGGAATTGTCAATGATACTTACAAGATGGATCTTATTCTCATACACCCAC]
consensusID : consensus_13880#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 674 fasta sequence
[TGCCCCCATTTGCCTGGGGAATGGTCCATGATCCTTACCAGATGGGTTTTTTTTTCCTACCCCCCCCCTATTTTATAGCTTTAGCCTGGATTTCCCTTGCAAGCGTTTTTAAAGACAAGGGCATAACTTTGTGGTTTGAAAAGCTCCGTGTTTACATGAACCTTGTCAAGAATATCTCGATGGAAATTTTGGGCTTTTTTGACCCCTCCAAGATTGATCCTCAAAGAGGGCTCCCCGAGGGCAAAATAGCCCCTGTGATGAACAAACTGCCTTCAAAGGCCTAAAGCCGGCTGAGCCCTAGTTCCGTTGTTTTCCGTTTGAGGGTCAAATCCCCTTTTGGTTGTACCCCCGGAAATTTGGGTCCCCCTGGGGAACTTTTTTTTTCCATGCCCTTTTTTTTTTTTTTGTTTCCGAATTCCGAATTGCCCCTAACGAACGGTTTTATTTAGAATTCCGAACTTTTTTCAGCTGTTCCTGTTTCACCAGCTTTCGGGGCCAATCTTTTTCCATGAAGATTCCCCCGGGTTGGGAATGGTCGGTTTCTGTATGGGTTTTTGATGGGTAAAAAAAAACCTGGCTTTGGGGCTTTTTTGTTTTTTTAGCCAATGAAATCCTGAAAAATTTTTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA759976 [TGCCCCCATTTGCCTGGGGAATGGTCCATGATCCTTACCAGATGGGTTTTTTTTTCCTACCCCCCCCCTATTTTATAGCTTTAGCCTGGATTTCCCTTGCAAGCGTTTTTAAAGACAAGGGCATAACTTTGTGGTTTGAAAAGCTCCGTGTTTACATGAACCTTGTCAAGAATATCTCGATGGAAATTTTGGGCTTTTTTGACCCCTCCAAGATTGATCCTCAAAGAGGGCTCCCCGAGGGCAAAATAGCCCCTGTGATGAACAAACTGCCTTCAAAGGCCTAAAGCCGGCTGAGCCCTAGTTCCGTTGTTTTCCGTTTGAGGGTCAAATCCCCTTTTGGTTGTACCCCCGGAAATTTGGGTCCCCCTGGGGAACTTTTTTTTTCCATGCCCTTTTTTTTTTTTTTGTTTCCGAATTCCGAATTGCCCCTAACGAACGGTTTTATTTAGAATTCCGAACTTTTTTCAGCTGTTCCTGTTTCACCAGCTTTCGGGGCCAATCTTTTTCCATGAAGATTCCCCCGGGTTGGGAATGGTCGGTTTCTGTATGGGTTTTTGATGGGTAAAAAAAAACCTGGCTTTGGGGCTTTTTTGTTTTTTTAGCCAATGAAATCCTGAAAAATTTTTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_13880#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 518 fasta sequence
[TTCCTTAAAGACAAGGACATAACTCTGTGGCTCTTGTAAGACGCTCCGTCGCTTCGACATGAACATTGGTCAAGAATATCGTCGATGGACAATTTCTGGACTTCTATGACACCTACCATAGATTTGATCCTCAAAGAGGGCTCCCAGAGGACTAAATAGCCCCTGTGATGAACAACTGCCTTCAAAGGCCTAAAGCAGATCTGAGCCCTAGTTCACGTTCGTTATCAGTCTGAGCGCTCAAATCACCTTATGCTCGTACAACACGGAAATACTGTGTCACCTTCGGAGAACTTTATATGTTCAATGCCCACTATATATATATATAGTATCAGCAACTTCACCATTGCCCCTAACGAACGATTTAATTCAGAATTCCGAACTATATACCAGCTGTTCCTGTTGCAGCAGCTTGTCGAGGCCAATCACTTTACAATGAAGATCCCAACGGGTTGGGAATGGTCTGTATCTGTATGTGTTTTTGATCCCCTCCAAAAAAACCTGGCTTTGGTACTAAAAAA]
[+] EMBL BI797993 [TTCCTTAAAGACAAGGACATAACTCTGTGGCTCTTGTAAGACGCTCCGTCGCTTCGACATGAACATTGGTCAAGAATATCGTCGATGGACAATTTCTGGACTTCTATGACACCTACCATAGATTTGATCCTCAAAGAGGGCTCCCAGAGGACTAAATAGCCCCTGTGATGAACAACTGCCTTCAAAGGCCTAAAGCAGATCTGAGCCCTAGTTCACGTTCGTTATCAGTCTGAGCGCTCAAATCACCTTATGCTCGTACAACACGGAAATACTGTGTCACCTTCGGAGAACTTTATATGTTCAATGCCCACTATATATATATATAGTATCAGCAACTTCACCATTGCCCCTAACGAACGATTTAATTCAGAATTCCGAACTATATACCAGCTGTTCCTGTTGCAGCAGCTTGTCGAGGCCAATCACTTTACAATGAAGATCCCAACGGGTTGGGAATGGTCTGTATCTGTATGTGTTTTTGATCCCCTCCAAAAAAACCTGGCTTTGGTACTAAAAAA]
consensusID : consensus_13880#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 322 fasta sequence
[GTTTNTATTTNGNATCAAAGGTGGAAGAAAGCACAGTGCAAGCAAGAATNCTTATATTTTACATAAAAAANATGTGTACTTCTAATGAGAAGTACCGGTTTGAANTCAANNATATCCTTGAAATGGANATAAAGCTCCTGGAGGCACTTGACTATTATTTAGTTGTNTACCACCCATATCGTCCTCTTTTACAGTTATTNCAGGATGCTGGCATAACANNTCTGNCACAATTAGCCTGGGGAATTGTCANTGGTACTTGCANGNTGGATCTTATTCTCATNCACCCTCCNTNTGTGNTAGCATTAGCCTGCATCTNCATTGC]
[+] EMBL OSC04631 [GTTTNTATTTNGNATCAAAGGTGGAAGAAAGCACAGTGCAAGCAAGAATNCTTATATTTTACATAAAAAANATGTGTACTTCTAATGAGAAGTACCGGTTTGAANTCAANNATATCCTTGAAATGGANATAAAGCTCCTGGAGGCACTTGACTATTATTTAGTTGTNTACCACCCATATCGTCCTCTTTTACAGTTATTNCAGGATGCTGGCATAACANNTCTGNCACAATTAGCCTGGGGAATTGTCANTGGTACTTGCANGNTGGATCTTATTCTCATNCACCCTCCNTNTGTGNTAGCATTAGCCTGCATCTNCATTGC]
consensusID : consensus_13880#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 195 fasta sequence
[AATTCAGAATTGCCCCCTAACGACCGNTTTNATTCAGNNTTCCGAACTNTATNCGGCTGCTCCTGTTGCAGCCGCTTGCGAGGCAAANCATTTACANTGNAGATCCCANACGGGTTGGGAATGGTCTGTATCTGTATGTGTTTTTGNTGTGTAAAAAAAAACCTGGCTTTGGTACTATTTAGTTTCTATAGCAAA]
[+] EMBL D42896 [AATTCAGAATTGCCCCCTAACGACCGNTTTNATTCAGNNTTCCGAACTNTATNCGGCTGCTCCTGTTGCAGCCGCTTGCGAGGCAAANCATTTACANTGNAGATCCCANACGGGTTGGGAATGGTCTGTATCTGTATGTGTTTTTGNTGTGTAAAAAAAAACCTGGCTTTGGTACTATTTAGTTTCTATAGCAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13880#2 ------------------------------------------------------------
consensus_13880#3 ------------------------------------------------------------
consensus_13880#5 ------------------------------------------------------------
consensus_13880#0 CCCCTCCCCTTCCCCCCTCCCCTCCGGCGAACTCCGAGCTCTTCCCGGTGAGCGCCGCCG 60
consensus_13880#1 ------------------------------------------------------------
consensus_13880#4 ------------------------------------------------------------
consensus_13880#2 ------------------------------------------------------------
consensus_13880#3 ------------------------------------------------------------
consensus_13880#5 ------------------------------------------------------------
consensus_13880#0 ATTCGGCCGGAGAGGCTCGCCGGAGTCGCCTCCGCCCTGCCCACGATGGCCGCCAACTTC 120
consensus_13880#1 ------------------------------------------------------------
consensus_13880#4 ------------------------------------------------------------
consensus_13880#2 ------------------------------------------------------------
consensus_13880#3 ------------------------------------------------------------
consensus_13880#5 ------------------------------------------------------------
consensus_13880#0 TGGACGTCGTCGCACTGCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAG 180
consensus_13880#1 ------------------------------------------------------------
consensus_13880#4 ------------------------------------------------------------
consensus_13880#2 ------------------------------------------------------------
consensus_13880#3 ------------------------------------------------------------
consensus_13880#5 ------------------------------------------------------------
consensus_13880#0 GCGGACAGCGACCGGGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCC 240
consensus_13880#1 ------------------------------------------------------------
consensus_13880#4 ------------------------------------------------------------
consensus_13880#2 ------------------------------------------------------------
consensus_13880#3 ------------------------------------------------------------
consensus_13880#5 ------------------------------------------------------------
consensus_13880#0 TTCCATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGGGTGATAGCTACTGCT 300
consensus_13880#1 ------------------------------------------------------------
consensus_13880#4 ------------------------------------------------------------
consensus_13880#2 ------------------------------------------------------------
consensus_13880#3 ------------------------------------------------------------
consensus_13880#5 ------------------------------------------------------------
consensus_13880#0 GTTACTTATTTCAGGCGTGTATACACAAGAAAGAGCATGACTGAATATGATCCTCGTCTG 360
consensus_13880#1 ------------------------------------------------------------
consensus_13880#4 ------------------------------------------------------------
consensus_13880#2 ------------------------------------------------------------
consensus_13880#3 ------------------------------------------------------------
consensus_13880#5 ------------------------------------------------------------
consensus_13880#0 GTAGCACCAACCTGTTTGTATTTGGCATCAAAGGTGGAAGAGAGCACAGTGCAAGCAAGA 420
consensus_13880#1 ------------------------------------------------------------
consensus_13880#4 ------------------------------------------------------------
consensus_13880#2 ------------------------------------------------------------
consensus_13880#3 ------------------------------------------------------------
consensus_13880#5 ------------------------------------------------------------
consensus_13880#0 CTTCTTGTCTTTTACATAAAAAAGATGTGTGCTTCTGATGAGAAGTACCGGTTTGAAATC 480
consensus_13880#1 ----------------------------CCTTCCCCCCCTCAAGCGGCGAACTCCGAGCT 32
consensus_13880#4 ------------------------------------------------------------
consensus_13880#2 ------------------------------------------------------------
consensus_13880#3 ------------------------------------------------------------
consensus_13880#5 ------------------------------------------------------------
consensus_13880#0 AAGGATATCCTTGAAATGGAAATGAAGCTCCTGGAGGCACTTGACTATTATTTAGTTGTT 540
consensus_13880#1 CTTCCCGGTGAGCGCCGCCGATTCGGCCGGAGAGGCTCGCCGGAGTCGCCTCCGCCCTGC 92
consensus_13880#4 ------------------------------------------------------------
consensus_13880#2 -------------------------------------------------------TGCCC 5
consensus_13880#3 ------------------------------------------------------------
consensus_13880#5 ------------------------------------------------------------
consensus_13880#0 TACCACCCATATCGTCCTCTTTTACAGTTATTGCAGGATGCTGGCATAACAGATCTGACA 600
consensus_13880#1 CCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGGTAAGCGTCCAACCTCCCCCACG 152
consensus_13880#4 ------------------------------------------------------------
consensus_13880#2 CCATTTGCCTGGGGAATGGTCCATGATCCTTACCAGATGGGTTTTTTTTTCCTACCCCCC 65
consensus_13880#3 ------------------------------------------------------------
consensus_13880#5 ------------------------------------------------------------
consensus_13880#0 CAATTTGCCTGGGGAATTGTCAATGATACTTACAAGATGGATCTTATTCTCATACACCCA 660
consensus_13880#1 TTTCCCCCCCTCTCGATTCGGTTTCTTGGGCTGCGAATCCGTGAGCTGAGCTGCTGCTGA 212
consensus_13880#4 ------------------------------------------------------------
consensus_13880#2 CCCTATTTTATAGCTTTAGCCTGGATTTCCCTTGCAAGCGTTTTTAAAGACAAGGGCATA 125
consensus_13880#3 ---------------------------------------TTCCTTAAAGACAAGGACATA 21
consensus_13880#5 ------------------------------------------------------------
consensus_13880#0 CCATATATGATAGCATTAGCCTGCATCTACATTGCAAGCGTTCTTAAAGACAAGGACATA 720
consensus_13880#1 TTTGGGGGGTGTTCGTTCGTGTGTGATCCCGCGGCGAGCGAGGGCAGCAAGCAGCTGCTG 272
consensus_13880#4 ------------------------------------------------------------
consensus_13880#2 ACTTTGTGGTT----TGAAAAGCTCCGT-GTTT--ACATGAACCTTG-TCAAGAATATC- 176
consensus_13880#3 ACTCTGTGGCTCTTGTAAGACGCTCCGTCGCTTCGACATGAACATTGGTCAAGAATATCG 81
consensus_13880#5 ------------------------------------------------------------
consensus_13880#0 ACTCTGTGGTT----TGAAGAGCTCCGT---GTTGACATGAACATTG-TCAAGAATATC- 771
consensus_13880#1 GACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAGCGACCGGGGCATCACGCCGGAG 332
consensus_13880#4 ------------------------------------------------------------
consensus_13880#2 TCGATGGAAA--TTTTGGGCTTTTTTGACCCCTCCAAGA---TTGATCCTCAAAGAGGGC 231
consensus_13880#3 TCGATGGACAATTTCTGGACTTCTATGACACCTACCATAGATTTGATCCTCAAAGAGGGC 141
consensus_13880#5 ------------------------------------------------------------
consensus_13880#0 TCGATGGAAA--TTTTGGACTTCTATGACACCTACAAGA---TTGATCCTCAAAGAGGGC 826
consensus_13880#1 GAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCATATCTG-GCGATTGGCACAACAGGT 391
consensus_13880#4 ------------------------------------------------------------
consensus_13880#2 TCCCCGAGGGCAAAATAGCCCCTGTGATGAACAAACTGCCTTCAAAGGCCTAAAGCCGG- 290
consensus_13880#3 TCCCAGAGGACTAAATAGCCCCTGTGATGAACAA-CTGCCTTCAAAGGCCTAAAGCAGAT 200
consensus_13880#5 ------------------------------------------------------------
consensus_13880#0 TCCCAGAGGACAAAATAGCCCCTGTGATGAACAAACTGCCTTCAAAGGCCTAAAGCAGA- 885
consensus_13880#1 GAAAGTTAGACAAAGGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG 451
consensus_13880#4 ------------------------------------------------------------
consensus_13880#2 CTGAGCCCTAGTTC-CGTT-GTTTTCCGTTTGAGGG-TCAAATCCCCTTTTGGTTGTACC 347
consensus_13880#3 CTGAGCCCTAGTTCACGTTCGTTATCAGTCTGAGCGCTCAAATCACCTTATGCTCGTACA 260
consensus_13880#5 ------------------------------------------------------------
consensus_13880#0 CTGAGCCCTAGTTC--AGTTGTTATCAGTCTGAGCG-TCAAATCACCTTATGCTCGTACA 942
consensus_13880#1 AAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTATTTGGCATC 511
consensus_13880#4 --------------------------------------------GTTTNTATTTNGNATC 16
consensus_13880#2 CC-CGGAA-AT-TTGGGTCCCCCT-GGGGAACTTTTTTT-TTCCATGCCCTTTTTTTTTT 402
consensus_13880#3 ACACGGAA-ATACTGTGTCACCTTCGGAGAACTTTATATGTTCAATGCCCACTATATATA 319
consensus_13880#5 ------------------------------------------------------------
consensus_13880#0 ACAGGAAATATGTGTCACCTTCCTTGGAGAACTTTATAT-TTCAAAGCCATATATATATA 1001
consensus_13880#1 AAAGGTGGAAGAGAGCACAGTGCAAGCAAGACTTCTTGTCTTTTACATAAAAAAGATGTG 571
consensus_13880#4 AAAGGTGGAAGAAAGCACAGTGCAAGCAAGAATNCTTATATTTTACATAAAAAANATGTG 76
consensus_13880#2 TTT----TGTTTCCGAATTCCGAATTGCCCC-TAACGAACGGTTTTATTTAGAATTCCGA 457
consensus_13880#3 TATATAGTATCAGCAACTTCACCATTGCCCC-TAACGAACGATTTAATTCAGAATTCCGA 378
consensus_13880#5 ---------------AATTCAGAATTGCCCCCTAACGACCGNTTTNATTCAGNNTTCCGA 45
consensus_13880#0 TA------GTATCAGAATTCAGAATTGCCCC-TAACGAACGATTTAATTCAGAATTCCGA 1054
consensus_13880#1 TGCTTC-TGATGAGAAGTACCGGTTTGAAATCAAGGATATCCTTGAAATGGAAATGAAGC 630
consensus_13880#4 TACTTC-TAATGAGAAGTACCGGTTTGAANTCAANNATATCCTTGAAATGGANATAAAGC 135
* * * *** * ** * * * *
consensus_13880#2 ACTTTTT-TCAGCTGTTCCTGTTTCACCAGCTT-TCGGGGCCAATCTTTTTCCA-TGAAG 514
consensus_13880#3 ACTATATACCAGCTGTTCCTGTTGCAGCAGCTTGTCGAGGCCAATCACTTTACAATGAAG 438
consensus_13880#5 ACTNTAT-NCGGCTGCTCCTGTTGCAGCCGCTT-GCGAGGCAAANCA-TTTACANTGNAG 102
consensus_13880#0 ACTATAT-ACAGCTGTTCCTGTTGCAGCAGCTT-GCGAGGCAAATCA-TTTACAATGAAG 1111
consensus_13880#1 TCCTGGAGGCACTTGACTATTATTTAGTTGTTT-ACCACCCATATCGTCCTCTTTTACAG 689
consensus_13880#4 TCCTGGAGGCACTTGACTATTATTTAGTTGTNT-ACCACCCATATCGTCCTCTTTTACAG 194
* * ** * * * * * * * * * * * **
consensus_13880#2 ATTCCCC-CGGGTTGGGAATGGTCGGTTTCTGTATGGGTTTTTGATGGG-TAAAAAAAAA 572
consensus_13880#3 ATCCCAA-CGGGTTGGGAATGGTCTGTATCTGTATGTGTTTTTGATCCCCTCCAAAAAAA 497
consensus_13880#5 ATCCCANACGGGTTGGGAATGGTCTGTATCTGTATGTGTTTTTGNTGTG-TAAAAAAAAA 161
consensus_13880#0 ATCCCAA-CGGGTTGGGAATGGTCTGTATCTGTATGTGTTTTTGATGTG-TAAAAAAAAA 1169
consensus_13880#1 TTATTGCAGGATGCTGGCATAACAGATCTGACACAATTTGCCTGGGGAATTGTCAATGAT 749
consensus_13880#4 TTATTNCAGGATGCTGGCATAACANNTCTGNCACAATTAGCCTGGGGAATTGTCANTGGT 254
* * ** ** * * ** * *
consensus_13880#2 CCTGGCTTTGGGGCTTTTTTGTTTTTTTAGCCAATGAAATCCTGAAAAATTTTTGCCAAA 632
consensus_13880#3 CCTGGCTTTGGTACTAAAAAA--------------------------------------- 518
consensus_13880#5 CCTGGCTTTGGTACTATTTAGTTTCTATAGCAAA-------------------------- 195
consensus_13880#0 CATGGCTTTGGTACTATTTAGTTTCTATAGCAAATGAAATCCTGAAAAATTCT------- 1222
consensus_13880#1 ACTTACAAGATGGATCTTATTCTCATACACCCAC-------------------------- 783
consensus_13880#4 ACTTGCANGNTGGATCTTATTCTCATNCACCCTCCNTNTGTGNTAGCATTAGCCTGCATC 314
* * *
consensus_13880#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 674
consensus_13880#3 ------------------------------------------
consensus_13880#5 ------------------------------------------
consensus_13880#0 ------------------------------------------
consensus_13880#1 ------------------------------------------
consensus_13880#4 TNCATTGC---------------------------------- 322
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||