|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13888#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1050 fasta sequence
[GCAGCAACGTACGCGTACTGTCTAGTTAGCTAGCTTCTTAGCTTCGAACCTTCGATCTCTCGATCACAGGCTAATCAAGCTTAGCTTGATGGCAACTTGGTCCAATGCGTCGTCTCTGATCGTCGCCGCCGTAATTCTGCTTGGCCTCAGCTCGGCAAGCGTCGCGCATGGCCGCCGCGGCAGGAGGAGCTTCGTCTCCAGCTACGACGAGCCGTGCATGGAGATGAGGCTGTACCTCCACGACATCATCTACGACTACAGTAACAGCACCTCCAACTCCACGTCGGCGGCGGCCACCAAGCCGACGCCGCTGAGCACCGCCGTGTCCAACCCCGGCTACTTCTTCGGCGAGATGGTGGTGTTCAACGACCCCATGACGGAGGGGAGGGCGCTGCCGCCGTCGCCGGCGATGGAGGAGGAGACGGCAGTGCGCGCGCAGGGGGTCTACCTCTACGACAAGAAGGAGGCGCCCAACGCGTGGTTCGCCTTCTCCGTGGTGTTCAACTCCACGGGGCGCCGCGGCACGCTCAACCTGATGGGCGCCGACCTCATGTCGGAGAAGACGAGGGACCTCTCCGTCGTGGGTGGCACCGGCGACTTCTTCATGTCCCGCGGCGTCGCCACGCTCAGCACCGACGAGGCCTCGGCGGACTTGTCATACTTCCGGGTGAAGGTGGACATCAAGCTCTACGAATGCTACGTCTGATCCCATGCATACGTACGCTTGCTCTTTCATGGCCGTGGATCGGATCATCGCGTGTCCTAAATATGCGCTTGTATTTGTGTGATTGTGTGTGTTGAATTTCCTTCTTGACATTCATCATCTTTGCGTGACGAGTCATATGCACGGAGAAATGTGCAAAATGTGTTTTTTTTTTCGTGTTTTGGATTTGCATCTCATGTATTGTTTGAGTGACGAGTCAGCGATCGGCTTGGCGTGGTGGTTTGTTTTGTCTTTCTTTTTCCTGGTTATAATCTTCATAGTTATAATCTTATAATTTTTTTTCTACATCAATATAAAATCTTGTATTAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK108983 [GCAGCAACGTACGCGTACTGTCTAGTTAGCTAGCTTCTTAGCTTCGAACCTTCGATCTCTCGATCACAGGCTAATCAAGCTTAGCTTGATGGCAACTTGGTCCAATGCGTCGTCTCTGATCGTCGCCGCCGTAATTCTGCTTGGCCTCAGCTCGGCAAGCGTCGCGCATGGCCGCCGCGGCAGGAGGAGCTTCGTCTCCAGCTACGACGAGCCGTGCATGGAGATGAGGCTGTACCTCCACGACATCATCTACGACTACAGTAACAGCACCTCCAACTCCACGTCGGCGGCGGCCACCAAGCCGACGCCGCTGAGCACCGCCGTGTCCAACCCCGGCTACTTCTTCGGCGAGATGGTGGTGTTCAACGACCCCATGACGGAGGGGAGGGCGCTGCCGCCGTCGCCGGCGATGGAGGAGGAGACGGCAGTGCGCGCGCAGGGGGTCTACCTCTACGACAAGAAGGAGGCGCCCAACGCGTGGTTCGCCTTCTCCGTGGTGTTCAACTCCACGGGGCGCCGCGGCACGCTCAACCTGATGGGCGCCGACCTCATGTCGGAGAAGACGAGGGACCTCTCCGTCGTGGGTGGCACCGGCGACTTCTTCATGTCCCGCGGCGTCGCCACGCTCAGCACCGACGAGGCCTCGGCGGACTTGTCATACTTCCGGGTGAAGGTGGACATCAAGCTCTACGAATGCTACGTCTGATCCCATGCATACGTACGCTTGCTCTTTCATGGCCGTGGATCGGATCATCGCGTGTCCTAAATATGCGCTTGTATTTGTGTGATTGTGTGTGTTGAATTTCCTTCTTGACATTCATCATCTTTGCGTGACGAGTCATATGCACGGAGAAATGTGCAAAATGTGTTTTTTTTTTCGTGTTTTGGATTTGCATCTCATGTATTGTTTGAGTGACGAGTCAGCGATCGGCTTGGCGTGGTGGTTTGTTTTGTCTTTCTTTTTCCTGGTTATAATCTTCATAGTTATAATCTTATAATTTTTTTTCTACATCAATATAAA ]
[+] EMBL CF290880 [GCAGCAACGTACGCGTACTGTCTAGTTAGCTAGCTTCTTAGCTTCGAACCTTCGATCTCTCGATCACAGGCTAATCAAGCTTAGCTTGATGGCAACTTGGTCCAATGCGTCGTCTCTGATCGTCGCCGCCGTAATTCTGCTTGGCCTCAGCTCGGCAAGCGTCGCGCATGGCCGCCGCGGCAGGAGGAGCTTCGTCTCCAGCTACGACGAGCCGTGCATGGAGATGAGGCTGTACCTCCACGACATCATCTACGACTACAGTAACAGCACCTCCAACTCCACGTCGGCGGCGGCCACCAAGCCGACGCCGCTGAGCACCGCCGTGTCCAACCCCGGCTACTTCTTCGGCGAGATGGTGGTGTTCAACG ]
[-] EMBL CF290879 [ CTTGTCATACTTCCGGGTGAAGGTGGACATCAAGCTTTACGAATGGTACGTTTGATCCCATGCATACGTACGCTTGCTTTTTCATGGCCGTGGATCGGATCATCGCGTGTCCTAAATATGCGCTTGTATTTGTGTGATTGTGTGTGTTGAATTTCCTTCTTGACATTCATCATCTTTGCGTGACGAGTCATATGCCCGGAGAAATGTGCAAAATGTGTTTTTTTTTTCGTGTTTTGGATTTGCATCTCATGTATTGTTTGAGTGACGAGTCAGCGATCGGCTTGGCGTGGTGGTTTGTTTTGTCTTTCTTTTTCCTGGTTATAATCTTCATAGTTATAATCTTATAATTTTTTTTCTACATCAATATAAAATCTTGTATTAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_13888#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 994 fasta sequence
[CTGCAGCTAGCTAGCTAAGCTTGGATAACAGTGCAAGGGCGCCGGACGGCTACTTGGTCCATGGCGTCTCTGACGATCGTCGTCGCCACCATCTTCCTGCTCAGCCTCACCTCGGCGAGCGTCGCCGTCCATGGCCGGAGCAGCAGGAGGAGGTTCGTCAGGAGCTACGACGAGCCGTGCATGGAGATGAGGCTGTACCTCCACGACATCCTCTACGACTACAGCAACAGCACCTCCAACTCCACGGCGGCGGCGGCCACCAAGCCGACGGCGCTGGCCAACGCCGTGCCGTCGACCGGCGGCACCTTCTTCGGCGAGGTGGTGGTGTTCAACGACCCGGTGACGGAGGGGAGGGCGCTGCCGCCGTCGCTGGAGGAGACGGCGGTGAGGGCGCAGGGGCTCTACCTCTACAACAGCAAGGAGGCGTTCAACGCGTGGCTCGCCTTCTCCATCGTGTTCAACTCCACGGGGCGCCGCGGCACGCTCAACCTCATGGGCGCCGACATCATCGCCGAGAAGACGAGGGACATCTCCGTCGTGGGCGGCACCGGCGACTTCTTCATGTCGCGCGGCGTCGCCACCCTCCGCACCGACGCTTTCGAGGGCTTCACCTACTTCAGGCTGCAGATGGACATCAAGCTCTACGAGTGCTACGTATGATGCATCCATCCATGGTCGTATAATATATACTCCATCCGTTCTAAAATATAAGTATTTTTAGCTATGAACGCTTATATTTTAAGACGGAGGGAGTACCAAACACTATTCATTATTGTCGATGCAAATTTCAGTGAAGATGTGACATCTTTGGTCAGGGAG-ACAAATGATCAGCCAATTGACAAGGTG-ATCTGATGCTCCTAGCTTCGTCTACCTATAGATTTATTTGTTGCTGCTCCCATCATCAGATCAGACCACCAGCTGTATGAGTATATACACAGTTTGTATGCTAAATTCTTTCTAAATAAACATCCTTATGCAAATGTGTTGATAAAAA]
[+] EMBL AK103858 [CTGCAGCTAGCTAGCTAAGCTTGGATAACAGTGCAAGGGCGCCGGACGGCTACTTGGTCCATGGCGTCTCTGACGATCGTCGTCGCCACCATCTTCCTGCTCAGCCTCACCTCGGCGAGCGTCGCCGTCCATGGCCGGAGCAGCAGGAGGAGGTTCGTCAGGAGCTACGACGAGCCGTGCATGGAGATGAGGCTGTACCTCCACGACATCCTCTACGACTACAGCAACAGCACCTCCAACTCCACGGCGGCGGCGGCCACCAAGCCGACGGCGCTGGCCAACGCCGTGCCGTCGACCGGCGGCACCTTCTTCGGCGAGGTGGTGGTGTTCAACGACCCGGTGACGGAGGGGAGGGCGCTGCCGCCGTCGCTGGAGGAGACGGCGGTGAGGGCGCAGGGGCTCTACCTCTACAACAGCAAGGAGGCGTTCAACGCGTGGCTCGCCTTCTCCATCGTGTTCAACTCCACGGGGCGCCGCGGCACGCTCAACCTCATGGGCGCCGACATCATCGCCGAGAAGACGAGGGACATCTCCGTCGTGGGCGGCACCGGCGACTTCTTCATGTCGCGCGGCGTCGCCACCCTCCGCACCGACGCTTTCGAGGGCTTCACCTACTTCAGGCTGCAGATGGACATCAAGCTCTACGAGTGCTACGTATGATGCATCCATCCATGGTCGTATAATATATACTCCATCCGTTCTAAAATATAAGTATTTTTAGCTATGAACGCTTATATTTTAAGACGGAGGGAGTACCAAACACTATTCATTATTGTCGATGCAAATTTCAGTGAAGATGTGACATCTTTGGTCAGGGAG ACAAATGATCAGCCAATTGACAAGGTG ATCTGATGCTCCTAGCTTCGTCTACCTATAGATTTATTTGTTGCTGCTCCCATCATCAGATCAGACCACCAGCTGTATGAGTATATACACAGTTTGTATGCTAAATTCTTTCTAAATAAACA ]
[+] EMBL AU089664 [ TCAGGGAGTACAAATGATCAGCCAATTGACAAGGTGCATCTGATGCTCCTAGCTTCGTCTACCTATACATTTATTTGTTGCTGCTCCCATCATCAGATCAGACCACCAGCTGTATGAGTATATACACAGTTTGTATGCTAAATTCTTTCTAAATAAACATCCTTATGCAAATGTGTTGATAAAAA]
consensusID : consensus_13888#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 929 fasta sequence
[AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCCAGCATTGACAGGCACTTAGCTAAGTACGTAGCTATATAGCTTCTCCTGCTTGTTCATAATAAGCAAATAATTAACAATGCAAGGCCGGATGGTGACATGGTCCATGGCGTCTGTGATCGTCGCCGCGGCCTGCATCTTCCTCAGCTGCTCTGCGAGCGTCGCCCATGGAAGGAGATTCGTCAGGAGTAGTAGCTACGACAAGCCGTGCAAGGAGATGAGGCTCTACCTCCACGACATCCTCTACGACTACAGCAACAGCACCTCCAACTCCACGTCGGCGGCGGCCACCAAGCCGACGGCGC-TGGCCACCGCCGTGCCGTCGACCGGCGGCACCTTCTTCGGGCAGGTGGTGGTGTTCAACGACCCGATGACGGAGGGGAGGGCGCTGCCGCCGTCGCTGGAGGAGACGGCGGTGCGCGCGCAGGGGGTCTACCTCTACAACAGCAAGGAGGCGTTCAACGCGTGGTTCGCCTTCTCCATCGTGTTCAACTCCACGGGGCGCCGCGGCACGCTCAACCTCATGGGCGCCGACATCATCGCCGAGAAGACGAGGGACATCTCCGTCGTGGGCGGCACCGGCGACTTCTTCATGTCCCGCGGCGTCGCCACCCTCCGCACCGACGCCTTCGAGGGCTTCACCTACTTCCGGCTGCAGATGGACATCAAGCTCTACGAATGCTACGTCGTCTGATTACGTTGCTCTGAATTCTGATAGATGGTAATTAACATATAATACTGCTATACACGGTGTGATGCGTGATTTATTTCCATCGCGAAATATACTTGTTTGCTTGACGAGTTATATGCACCGATGAATGTGC-AAAATGTATCCCAAC-TTTGTTT-ATTTTCATTCAATAAA-GATGAA-GTTTGCTNTAAAAAAAAAAAAAAAAAAAAAG]
[+] EMBL AK106022 [AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCCAGCATTGACAGGCACTTAGCTAAGTACGTAGCTATATAGCTTCTCCTGCTTGTTCATAATAAGCAAATAATTAACAATGCAAGGCCGGATGGTGACATGGTCCATGGCGTCTGTGATCGTCGCCGCGGCCTGCATCTTCCTCAGCTGCTCTGCGAGCGTCGCCCATGGAAGGAGATTCGTCAGGAGTAGTAGCTACGACAAGCCGTGCAAGGAGATGAGGCTCTACCTCCACGACATCCTCTACGACTACAGCAACAGCACCTCCAACTCCACGTCGGCGGCGGCCACCAAGCCGACGGCGC TGGCCACCGCCGTGCCGTCGACCGGCGGCACCTTCTTCGGGCAGGTGGTGGTGTTCAACGACCCGATGACGGAGGGGAGGGCGCTGCCGCCGTCGCTGGAGGAGACGGCGGTGCGCGCGCAGGGGGTCTACCTCTACAACAGCAAGGAGGCGTTCAACGCGTGGTTCGCCTTCTCCATCGTGTTCAACTCCACGGGGCGCCGCGGCACGCTCAACCTCATGGGCGCCGACATCATCGCCGAGAAGACGAGGGACATCTCCGTCGTGGGCGGCACCGGCGACTTCTTCATGTCCCGCGGCGTCGCCACCCTCCGCACCGACGCCTTCGAGGGCTTCACCTACTTCCGGCTGCAGATGGACATCAAGCTCTACGAATGCTACGTCGTCTGATTACGTTGCTCTGAATTCTGATAGATGGTAATTAACATATAATACTGCTATACACGGTGTGATGCGTGATTTATTTCCATCGCGAAATATACTTGTTTGCTTGACGAGTTATATGCACCGATGAATGTGC AAAATGTATCCCAAC TTTGTTT ATTTTCATTCAATAAA GATGA ]
[+] EMBL OSR05571A [ ACAGGCACTTAGCTAAGTACGTAGCTATATAGCTTCTCCTGATTGTTCATAATAAGCAAATAATTAACAATGCAAGGCCGGATGGTGACATGGTCCATGGCGTCTGTGATCGTCGCCGCGGCCTGCATCTTCCTCAGCTGCTCTGCGAGCGTCGCCCATGGAAGGAGATTCGTCAGGAGTAGTAGCTACGACAAGCCGTGCAAGGNGATGNGGCTCTACCTCCACGACATCCTCTACGACTACAGCAACAGCACCTCCAACTCCANGTNGGCGGCGGCCACCAAGCCGNCGGCGCTTGGCCACCGCCGTGCCGT ]
[+] EMBL AU065923 [ CTACAACAGCAAGGAGGCGTTCAACGCGTGGTTCGCCTTCTCCATCGTGTTCAACTCCACGGGGCGCCGCGGCACGCTCAACCTCATGGGCGCCGACATCATCGCCGAGAAGACGAGGGACATCTCCGTCGTGGGCGGCACCGGCGACTTCTTCATGTCCCGCGGCGTCGCCACCCTCCGCACCGACGCCTTCGAGGGCTTCACCTACTTCCGGCTGCAGATGGACATCAAGCTCTACGAATGCTACGTCGTCTGATTACGTTGCTCTGAATTCTGATAGATGGTAATTAACATATAATACTGCTATACACGGTGTGATGCGTGATTTATTTCCATCGGGAAATATACTTGTTTGCTTTACGAGTTATATGCACCGATGAATTTTCAAAAATGTATCCCAACTTTTGTTTAATTTTAATTCAATAAAGGNTGAAGGTTTGCTNTAAAAAAAAAAAAAAAAAAAAAG]
[+] EMBL AU164576 [ ATGGGCGCCGACATCATCGCCGAGAAGACGAGGGACATCTCCGTCGT GGCGGCACCGGCGACTTCTTCATGTCCCGCGGCGTCGCCACCCTCCGCACCGACGCCTTCGAGGGCTTCACCTACTTCCGGCTGCAGATGGACATCAAGCTCTACGAATGCTACGTCGTCTGATTACGTTGCTCTGAATTCTGATAGATGGTAATTAACATATAATACTGCTATACACGGTGTGATGCGTGATTTATTTCCATCGCGAAATATACTTGTTTGCTTGACGAGTTATATGCACCGATGAATGTGC AAAATGTATCCCAAC TTTGTTT ATTTTCATTCAATAAA GATGAA GTTTGCTCTAAAAAAAAA ]
consensusID : consensus_13888#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 718 fasta sequence
[GCATGTGCGCGTTAGCTTANTTCTCACNAGCTGATCGATCACAGGTTATTCNATTAGTTAAGTTCAGCTACTTAATTAGCTAGCTCCATTACACTGCAAGCTAAGCCCANATCGATGGCAGCTTGGTCCATGGCGTCTCTGATGATCGTCGCCGCCATCTTCCTGCTCAGCCTCACCTCGGCGANCGTCGTCCATGGCCGGANCAACAGGAAGAAGTTCGTCAGGAGCTACGANGAACCGTGCATGGANATGANGCTCTNCCTCCACNACATCCTCTNCGANTNCAGCAACAGCACCACCAACTCCACGTTNGGGGGGGGCTCCAAGCCNACNGCGCTGAACACCCCGTGTCNAACCCCGGCTACTTCTTCCGCAGGGTGGTGGTGTTCAACCAACCCATNACAGANGGGAAGGCCTCCCCGTCCCTTGAAGAAACGGCNGTTNAAGGCGCAAGGGGCTCTTACCTTCTCCACAAGAAAGGANGANTTCCNNCNCCGTTGGTTCCCCCTTCCTCCATNCGTTGTTTCCAAATCCCACCGGGGNCGCCCCCCGGGNACCCCTCTAACCCTCCCNTTGGGGCGCCCCNAACCCCCCAAACCNCCCNNCNAAACAAAANGGGAANCTTCCTNCCCCTTTGGGTTTGGGGGGCGGGGNAANCCCNGGGGCNAAANATTCCCCTCCCCNTTNTTTCNCCGCCCGGGGGGTTTTTNNCCCNANC]
[+] EMBL BE229782 [GCATGTGCGCGTTAGCTTANTTCTCACNAGCTGATCGATCACAGGTTATTCNATTAGTTAAGTTCAGCTACTTAATTAGCTAGCTCCATTACACTGCAAGCTAAGCCCANATCGATGGCAGCTTGGTCCATGGCGTCTCTGATGATCGTCGCCGCCATCTTCCTGCTCAGCCTCACCTCGGCGANCGTCGTCCATGGCCGGANCAACAGGAAGAAGTTCGTCAGGAGCTACGANGAACCGTGCATGGANATGANGCTCTNCCTCCACNACATCCTCTNCGANTNCAGCAACAGCACCACCAACTCCACGTTNGGGGGGGGCTCCAAGCCNACNGCGCTGAACACCCCGTGTCNAACCCCGGCTACTTCTTCCGCAGGGTGGTGGTGTTCAACCAACCCATNACAGANGGGAAGGCCTCCCCGTCCCTTGAAGAAACGGCNGTTNAAGGCGCAAGGGGCTCTTACCTTCTCCACAAGAAAGGANGANTTCCNNCNCCGTTGGTTCCCCCTTCCTCCATNCGTTGTTTCCAAATCCCACCGGGGNCGCCCCCCGGGNACCCCTCTAACCCTCCCNTTGGGGCGCCCCNAACCCCCCAAACCNCCCNNCNAAACAAAANGGGAANCTTCCTNCCCCTTTGGGTTTGGGGGGCGGGGNAANCCCNGGGGCNAAANATTCCCCTCCCCNTTNTTTCNCCGCCCGGGGGGTTTTTNNCCCNANC]
consensusID : consensus_13888#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 635 fasta sequence
[AGCTAACACGTACTGTTTTGCATGCGCGCGCTTAGCTTAATTCTCACGAGCTGATCGATCACAGGTTATTCAATTAGTTAAGTTCAGCTACTTAATTAGCTAGCTCCATTACACTGCAAGCTAGGCCCAGATCGATGGCAGCTTGGTCCATGGCGTCTCTGATGATCGTCGCCGCCATCTTCCTGCTCAGCCTCACCTCGGCGAGCGTCGTCCATGGCCGGAGCAGCAGGAGGAGGTTCGTCAGGAGCTACGACGAGCCGTGCATGGAGATGAGGCTCTACCTCCACGACATCCTCTACGACTACAGCAACAGCACCACCAACTCCACGTCGGCGGCGGCCACCAAGCCGAAGGCGCTGAGCACCGCCGTGTCGAGCCCCGGCTACTTCTTCGGGCGGGTGGTGGTGTTCAACNACCCNATNACCGANGGGANGGCGCTGCCGCCGTCCCTNGAAGAAACGGCGGTGAAGGCGCATGGGCTCTACCTTCTCNACNAGAANGACNACTTCNGCGCGTGGTTCGCCTTCTCCCTCGTGTTCAACTCCACGGGGCGCCGCGGNACGCTCAACCTCCNTGGGGCGCCGAACCCAACCCCGCGAACAAAGGGACATCTCCNTGGTGGGNGGGCACCCGNC]
[+] EMBL AU096400 [AGCTAACACGTACTGTTTTGCATGCGCGCGCTTAGCTTAATTCTCACGAGCTGATCGATCACAGGTTATTCAATTAGTTAAGTTCAGCTACTTAATTAGCTAGCTCCATTACACTGCAAGCTAGGCCCAGATCGATGGCAGCTTGGTCCATGGCGTCTCTGATGATCGTCGCCGCCATCTTCCTGCTCAGCCTCACCTCGGCGAGCGTCGTCCATGGCCGGAGCAGCAGGAGGAGGTTCGTCAGGAGCTACGACGAGCCGTGCATGGAGATGAGGCTCTACCTCCACGACATCCTCTACGACTACAGCAACAGCACCACCAACTCCACGTCGGCGGCGGCCACCAAGCCGAAGGCGCTGAGCACCGCCGTGTCGAGCCCCGGCTACTTCTTCGGGC ]
[+] EMBL BE229773 [ gTTAGCTTAATTCTCACGAGCTGATCGATCACNGGTTATTCNATTAGTTANGTTCAGCTACTTAATTAGCTNGCTCCATTACNCTGCAAGCTAAGCCCAGATCGATGGCAGCTTGGTCCATGGCGTCTCTGATGATCGTCGCCGCCATCTTCCTGCTCAGCCTCACCTCGGCGAGCGTCGTCCATGGCCGGAGCANCAGGANGAGGTTCGTCAGGAGCTACCACGANCCGTGCATGGAGATGAGGCTCTACCTCCACGACATCCTCTACGACTNCAGCAACAGCACCNCCAACTCCACGTCGGCGGCGGCCACCAAGCCGACGGCGCTGANCACCGCCGTGTCNANCCCCGGCTACTTCTTCGGCAGGGTGGTGGTGTTCAACNACCCNATNACCGANGGGANGGCGCTGCCGCCGTCCCTNGAAGAAACGGCGGTGAAGGCGCATGGGCTCTACCTTCTCNACNAGAANGACNACTTCNGCGCGTGGTTCGCCTTCTCCCTCGTGTTCAACTCCACGGGGCGCCGCGGNACGCTCAACCTCCNTGGGGCGCCGAACCCAACCCCGCGAACAAAGGGACATCTCCNTGGTGGGNGGGCACCCGNC]
consensusID : consensus_13888#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 328 fasta sequence
[GAGATGAGGGACATCTCCGTCGTGGGCGGCACCGGTGACTTCTTCATGTCCCGCGGCGTCGCCACGCTCCGCACCGACGCCTTCGAGGGATTCACCTACTTCCGGCTGCAGATGGACATCAAACTCTATGAATGCTACGTCTGATAACTAATTAATCGATGCATGCATGGTGTGTGTGTGTGTGTATAGTAAACGTTTTATATGTCGATTGATGTGGTGTTTATTTAAAAGGAATTTGTTTCTCGATATTAGTATTTACTTGATGACGAGTACCTGCAGTATCTGTATGCACCGATGAGTGTGCAAATAAATGTAAACCAAACCCATT]
[+] EMBL BE530925 [GAGATGAGGGACATCTCCGTCGTGGGCGGCACCGGTGACTTCTTCATGTCCCGCGGCGTCGCCACGCTCCGCACCGACGCCTTCGAGGGATTCACCTACTTCCGGCTGCAGATGGACATCAAACTCTATGAATGCTACGTCTGATAACTAATTAATCGATGCATGCATGGTGTGTGTGTGTGTGTATAGTAAACGTTTTATATGTCGATTGATGTGGTGTTTATTTAAAAGGAATTTGTTTCTCGATATTAGTATTTACTTGATGACGAGTACCTGCAGTATCTGTATGCACCGATGAGTGTGCAAATAAATGTAAACCAAACCCATT]
consensusID : consensus_13888#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 316 fasta sequence
[GCCGACCCCAACACCNAGATGAGGGACATCTCCGTCGTGGGCGGCACCGGTGACTTCTTCATGTCCCGCGGCGTCGCCACNTCCGCACCGACNCCTTCGAGGGATTCACCTACTTCCGGCTGCAGATGGACATCAAACTCTATGAATGCTACGTCTGATAACTAATTAATCGATGATGTGGTGTTTATTTAAAAGGAATTTGTTTCTCGATATTAGTATTTACTTGATGACGAGTACCTGCAGTATCTGTATGCACCGATGAGTGTGCAAATAAATGTAACCCAAACCCATTTATNTTTAAAAAAAAAAAAAAAAA]
[+] EMBL AU033250 [GCCGACCCCAACACCNAGATGAGGGACATCTCCGTCGTGGGCGGCACCGGTGACTTCTTCATGTCCCGCGGCGTCGCCACNTCCGCACCGACNCCTTCGAGGGATTCACCTACTTCCGGCTGCAGATGGACATCAAACTCTATGAATGCTACGTCTGATAACTAATTAATCGATGATGTGGTGTTTATTTAAAAGGAATTTGTTTCTCGATATTAGTATTTACTTGATGACGAGTACCTGCAGTATCTGTATGCACCGATGAGTGTGCAAATAAATGTAACCCAAACCCATTTATNTTTAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13888#3 ------------------------------------------------------------
consensus_13888#4 ------------------------------------------------------------
consensus_13888#1 ------------------------------------------------------------
consensus_13888#0 ------------------------------------------------------------
consensus_13888#5 ------------------------------------------------------------
consensus_13888#6 ------------------------------------------------------------
consensus_13888#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCCAGCATTGACAGGCACTTAGCTAAGTAC 60
consensus_13888#3 ------------------------------------------------------------
consensus_13888#4 ------------------------------------------------------------
consensus_13888#1 ------------------------------------------------------------
consensus_13888#0 ------------------------------------------------------------
consensus_13888#5 ------------------------------------------------------------
consensus_13888#6 ------------------------------------------------------------
consensus_13888#2 GTAGCTATATAGCTTCTCCTGCTTGTTCATAATAAGCAAATAATTAACAATGCAAGGCCG 120
consensus_13888#3 ------------------------------------------------------------
consensus_13888#4 ------------------------------------------------------------
consensus_13888#1 ------------------------------------------------------------
consensus_13888#0 ------------------------------------------------------------
consensus_13888#5 ------------------------------------------------------------
consensus_13888#6 ------------------------------------------------------------
consensus_13888#2 GATGGTGACATGGTCCATGGCGTCTGTGATCGTCGCCGCGGCCTGCATCTTCCTCAGCTG 180
consensus_13888#3 ------------------------------------------------------------
consensus_13888#4 ------------------------------------------------------------
consensus_13888#1 ------------------------------------------------------------
consensus_13888#0 ------------------------------------------------------------
consensus_13888#5 ------------------------------------------------------------
consensus_13888#6 ------------------------------------------------------------
consensus_13888#2 CTCTGCGAGCGTCGCCCATGGAAGGAGATTCGTCAGGAGTAGTAGCTACGACAAGCCGTG 240
consensus_13888#3 ------------------------------------------------------------
consensus_13888#4 ------------------------------------------------------------
consensus_13888#1 ------------------------------------------------------------
consensus_13888#0 ------------------------------------------------------------
consensus_13888#5 ------------------------------------------------------------
consensus_13888#6 ------------------------------------------------------------
consensus_13888#2 CAAGGAGATGAGGCTCTACCTCCACGACATCCTCTACGACTACAGCAACAGCACCTCCAA 300
consensus_13888#3 ------------------------------------------------------------
consensus_13888#4 ------------------------------------------------------------
consensus_13888#1 ------------------------------------------------------------
consensus_13888#0 ------------------------------------------------------------
consensus_13888#5 ------------------------------------------------------------
consensus_13888#6 ------------------------------------------------------------
consensus_13888#2 CTCCACGTCGGCGGCGGCCACCAAGCCGACGGCGCTGGCCACCGCCGTGCCGTCGACCGG 360
consensus_13888#3 ------------------------------------------------------------
consensus_13888#4 ------------------------------------------------------------
consensus_13888#1 ------------------------------------------------------------
consensus_13888#0 ------------------------------------------------------------
consensus_13888#5 ------------------------------------------------------------
consensus_13888#6 ------------------------------------------------------------
consensus_13888#2 CGGCACCTTCTTCGGGCAGGTGGTGGTGTTCAACGACCCGATGACGGAGGGGAGGGCGCT 420
consensus_13888#3 -------------------------------GCATGTGCGCG-TTAGCTTANTTCTCACN 28
consensus_13888#4 ------------AGCTAACACGTACTGTTTTGCATGCGCGCGCTTAGCTTAATTCTCACG 48
consensus_13888#1 ------------------------------------------------------------
consensus_13888#0 ------------------------------------------------------------
consensus_13888#5 ------------------------------------------------------------
consensus_13888#6 ------------------------------------------------------------
consensus_13888#2 GCCGCCGTCGCTGGAGGAGACGGCGGTGCGCGCGCAGGGGGTCTACCTCTACAACAGCAA 480
consensus_13888#3 AGCTGATCGATCACAGGTTATTCNATTAGTTAAGTTC--AGCTACTTAA-TTAGCTAGCT 85
consensus_13888#4 AGCTGATCGATCACAGGTTATTCAATTAGTTAAGTTC--AGCTACTTAA-TTAGCTAGCT 105
consensus_13888#1 ---------------------------------CTGC--AGCTAGCTAG-CTAAGC--TT 22
consensus_13888#0 GCAGCAACGTACGCGTACTGTCTAGTTAGCTAGCTTCTTAGCTTCGAACCTTCGATCTCT 60
consensus_13888#5 ------------------------------------------------------------
consensus_13888#6 ------------------------------------------------------------
consensus_13888#2 GGAGGCGTTCAACGCGTGGTTCGCCTTCTCCATCGTGTTCAACTCCACGGGGCGCCGCGG 540
consensus_13888#3 CCATTACACTGCAAGCTAAGCCCANATCGATGGCAGCTTGGTCCATGGCGTCTCTGATGA 145
consensus_13888#4 CCATTACACTGCAAGCTAGGCCCAGATCGATGGCAGCTTGGTCCATGGCGTCTCTGATGA 165
consensus_13888#1 GGATAACAGTGCAAG---GGCGCCG---GACGGCTACTTGGTCCATGGCGTCTCTGACGA 76
consensus_13888#0 CGATCACAG-GCTAATCAAGCTTAGCTTGATGGCAACTTGGTCCAATGCGTCGTCTCTGA 119
consensus_13888#5 ----------------------------------GAGA---TGAGGGACATCTCCGTCG- 22
consensus_13888#6 -------------------GCCGACCCCAACACCNAGA---TGAGGGACATCTCCGTCG- 37
consensus_13888#2 CACGCTCAACCTCATGGGCGCCGACATCATCGCCGAGAAGACGAGGGACATCTCCGTCG- 599
* ** *
consensus_13888#3 TCGTCGCCGCCA---TCTTCCTGCTCAGCCTCACCTCGGCGANCGTCG---TCCATGGCC 199
consensus_13888#4 TCGTCGCCGCCA---TCTTCCTGCTCAGCCTCACCTCGGCGAGCGTCG---TCCATGGCC 219
consensus_13888#1 TCGTCGTCGCCACCATCTTCCTGCTCAGCCTCACCTCGGCGAGCGTCGCCGTCCATGGCC 136
consensus_13888#0 TCGTCGCCGCCG---TAATTCTGCTTGGCCTCAGCTCGGCAAGCGTCG---CGCATGGCC 173
consensus_13888#5 TGGGCGGCACCG----GTGACTTCTTCATGTC-CCGCGGCG-TCGCCACGCTCCGCA-CC 75
consensus_13888#6 TGGGCGGCACCG----GTGACTTCTTCATGTC-CCGCGGCG-TCGCCACN-TCCGCA-CC 89
consensus_13888#2 TGGGCGGCACCG----GCGACTTCTTCATGTC-CCGCGGCG-TCGCCACCCTCCGCA-CC 652
* * ** * ** ** ** ** * **** ** * * **
consensus_13888#3 GGANCAACAGGAAGAAGTTCGTCAGGAGCTACGANGAACCGTGCATGGANATGANGCTCT 259
consensus_13888#4 GGAGCAGCAGGAGGAGGTTCGTCAGGAGCTACGACGAGCCGTGCATGGAGATGAGGCTCT 279
consensus_13888#1 GGAGCAGCAGGAGGAGGTTCGTCAGGAGCTACGACGAGCCGTGCATGGAGATGAGGCTGT 196
consensus_13888#0 GCCGCGGCAGGAGGAGCTTCGTCTCCAGCTACGACGAGCCGTGCATGGAGATGAGGCTGT 233
consensus_13888#5 GACGCCTTCGAGGGA--TTCAC------CTACTTCCGGCTGCAGATGGACATCAAACTCT 127
consensus_13888#6 GACNCCTTCGAGGGA--TTCAC------CTACTTCCGGCTGCAGATGGACATCAAACTCT 141
consensus_13888#2 GACGCCTTCGAGGGC--TTCAC------CTACTTCCGGCTGCAGATGGACATCAAGCTCT 704
* * * * *** **** * * ***** ** * ** *
consensus_13888#3 NCCTCCACNACATCCTCTNCGANTNCAGCAACAGCACCACCAACTCCACGTTNGGGGGGG 319
consensus_13888#4 ACCTCCACGACATCCTCTACGACTACAGCAACAGCACCACCAACTCCACGTCGGCGGCGG 339
consensus_13888#1 ACCTCCACGACATCCTCTACGACTACAGCAACAGCACCTCCAACTCCACGGCGGCGGCGG 256
consensus_13888#0 ACCTCCACGACATCATCTACGACTACAGTAACAGCACCTCCAACTCCACGTCGGCGGCGG 293
consensus_13888#5 ATGAATGCTACGTC--TGATAACTA-ATTAATCGATGCATGCATGGTGTGTGTGTGTGTG 184
consensus_13888#6 ATGAATGCTACGTC--TGATAACTA-ATTAATCGATG----------------------- 175
consensus_13888#2 ACGAATGCTACGTC--GTCTGATTACGTTGCTCTGAATTCTGATAGATGGTAATTAA--- 759
* ** ** * *
consensus_13888#3 GCTCCAAGCCNACNGCGCTGAACACC-CCGTG---TCNAACCCCGGC--TACTTCTTCCG 373
consensus_13888#4 CCACCAAGCCGAAGGCGCTGAGCACCGCCGTG---TCGAGCCCCGGC--TACTTCTTCGG 394
consensus_13888#1 CCACCAAGCCGACGGCGCTGGCCAACGCCGTGCCGTCGACCGGCGGC--ACCTTCTTCGG 314
consensus_13888#0 CCACCAAGCCGACGCCGCTGAGCACCGCCGTG---TCCAACCCCGGC--TACTTCTTCGG 348
consensus_13888#5 TATAGTAAACGTTTTATATGTCGATTGATGTGGTGTTTATTTAAAA---GGAATTTGTTT 241
consensus_13888#6 ---------------------------ATGTGGTGTTTATTTAAAA---GGAATTTGTTT 205
consensus_13888#2 -CATATAATACTGCTATACACGGTGTGATGCGTGATTTATTTCCATCGCGAAATATACTT 818
* * * * * *
consensus_13888#3 CAGGGTGGTGGTGTTCAACCAACCCATNACAGANGGGAAGGCCT---CCCCGTCCC---- 426
consensus_13888#4 GCGGGTGGTGGTGTTCAACNACCCNATNACCGANGGGANGGCGCTGCCGCCGTCCC---- 450
consensus_13888#1 CGAGGTGGTGGTGTTCAACGACCCGGTGACGGAGGGGAGGGCGCTGCCGCCGTCGC---- 370
consensus_13888#0 CGAGATGGTGGTGTTCAACGACCCCATGACGGAGGGGAGGGCGCTGCCGCCGTCGCCGGC 408
consensus_13888#5 CTCGATATTAGTATTTACTTGA----TGACG--AGTACCTGCAGTATCTGTATGCA---- 291
consensus_13888#6 CTCGATATTAGTATTTACTTGA----TGACG--AGTACCTGCAGTATCTGTATGCA---- 255
consensus_13888#2 GTTTGCTTGACGAGTTATATGCAC--CGATG--AATGTGCAAAATGTATCCCAACT---- 870
* * *
consensus_13888#3 --TTGAAGAAACGGCNGTTNAAGGCGCAAGGGGCTCTTACCTTCTCCACAAGAAAGGANG 484
consensus_13888#4 --TNGAAGAAACGGCGGT-GAAGGCGCATGGG--CTCTACCTTCTCNACNAGAANG-ACN 504
consensus_13888#1 --TGGAGGAGACGGCGGT-GAGGGCGCAGGGG--CTCTACCTCTACAACAGCAAGG-AGG 424
consensus_13888#0 GATGGAGGAGGAGACGGCAGTGCGCGCGCAGGGGGTCTACCTCTACGACAAGAAGG-AGG 467
consensus_13888#5 --CCGATGAGTGTGCAAATAAATGTAAACCAAACCCATT--------------------- 328
consensus_13888#6 --CCGATGAGTGTGCAAATAAATGTAACCCAAACCCATTTATNTTTAAAAAAAAAAAAAA 313
consensus_13888#2 --TTGTTTATTTTC--ATTCAATAAAGATGAAGTTTGCTNTAAAAAAAAAAAAAAAAAAA 926
* *
consensus_13888#3 ANTTCCNNCNCCGTTGGTTCCCCCTTCCTCCATNCGTTGTTTCCAAATCCCACCGGGGNC 544
consensus_13888#4 ACTTCNGCGC---GTGGTTCGCCTTCTCCC------TCGTGTTCAA-CTCCAC--GGGGC 552
consensus_13888#1 CGTTCAACGC---GTGGCTCGCCTTCTCCA------TCGTGTTCAA-CTCCAC--GGGGC 472
consensus_13888#0 CGCCCAACGC---GTGGTTCGCCTTCTCCG------TGGTGTTCAA-CTCCAC--GGGGC 515
consensus_13888#5 ------------------------------------------------------------
consensus_13888#6 AAA--------------------------------------------------------- 316
consensus_13888#2 AAG--------------------------------------------------------- 929
consensus_13888#3 GCCCCCCGGGNACCCCTCTAACCCTCCCNTTGGGGCGCCCCNAACCCCCCAAAC-CNCCC 603
consensus_13888#4 GCCGC---GGNACGCTC--AACCTCCNTGGGGCGCCGAACCCAACCCCGCGAAC-AAAGG 606
consensus_13888#1 GCCGC---GGCACGCTC---AACCTCATGG-GCGCCGACATCATCGCCGAGAAGACGAGG 525
consensus_13888#0 GCCGC---GGCACGCTC---AACCTGATGG-GCGCCGACCTCATGTCGGAGAAGACGAGG 568
consensus_13888#5 ------------------------------------------------------------
consensus_13888#6 ------------------------------------------------------------
consensus_13888#2 ------------------------------------------------------------
consensus_13888#3 NNCNAAACAA-AANGGGAANCTTCC-TNCCCCTTTGGGTTTGGGGGGCGGGGNAANCCCN 661
consensus_13888#4 GACATCTCCNTGGTGGGNGGGCACC-CGNC------------------------------ 635
consensus_13888#1 GACATCTCCGTCGTGGGCGGCACCGGCGACTTCTTCATGTCGCGCGGCGTCGCCACCCTC 585
consensus_13888#0 GACCTCTCCGTCGTGGGTGGCACCGGCGACTTCTTCATGTCCCGCGGCGTCGCCACGCTC 628
consensus_13888#5 ------------------------------------------------------------
consensus_13888#6 ------------------------------------------------------------
consensus_13888#2 ------------------------------------------------------------
consensus_13888#3 GGGGCNAAANA---TTCCC----CTCCCCNTTNTTTCNCCGCCCGGGGGGTTTTTNNCCC 714
consensus_13888#4 ------------------------------------------------------------
consensus_13888#1 CGCACCGACGC---TTTCGAGGGCTTCACCTACTTCAGGCTGCAGATGGACATCAAGCTC 642
consensus_13888#0 AGCACCGACGAGGCCTCGGCGGACTTGTCATACTTCCGGGTGAAGGTGGACATCAAGCTC 688
consensus_13888#5 ------------------------------------------------------------
consensus_13888#6 ------------------------------------------------------------
consensus_13888#2 ------------------------------------------------------------
consensus_13888#3 NANC-------------------------------------------------------- 718
consensus_13888#4 ------------------------------------------------------------
consensus_13888#1 TACGAGTGCTACGTATGATGCATCCATCCATGGTCGTATAATATATACTCCATCCGTTCT 702
consensus_13888#0 TACGAATGCTACGTCTGAT-CCCATGCATACGTACGCTTGCTCTTTCATGGCCGTGGATC 747
consensus_13888#5 ------------------------------------------------------------
consensus_13888#6 ------------------------------------------------------------
consensus_13888#2 ------------------------------------------------------------
consensus_13888#3 ------------------------------------------------------------
consensus_13888#4 ------------------------------------------------------------
consensus_13888#1 AAAATATAAGTATTTTTAGCTATGAACGCTTATATTTTAAGACGGAGGGAGTACCAAACA 762
consensus_13888#0 GGATCATCGCGTGTCCTAAATATGCGCTTGTAT---TTGTGTGATTGTGTGTGTTGAATT 804
consensus_13888#5 ------------------------------------------------------------
consensus_13888#6 ------------------------------------------------------------
consensus_13888#2 ------------------------------------------------------------
consensus_13888#3 ------------------------------------------------------------
consensus_13888#4 ------------------------------------------------------------
consensus_13888#1 CTATTCATTATTGTCGATGCAAATTTCAGTGAAGATGTGACATCTTTGGTCAGGGAGACA 822
consensus_13888#0 TCCTTCTTGACATTCATCATCTTTGCGTGACGAGTCATATGCACGGAGAAATGTGCAAAA 864
consensus_13888#5 ------------------------------------------------------------
consensus_13888#6 ------------------------------------------------------------
consensus_13888#2 ------------------------------------------------------------
consensus_13888#3 ------------------------------------------------------------
consensus_13888#4 ------------------------------------------------------------
consensus_13888#1 AATGATCAGCCAATTGACAAGGTGATCTGATGCTCCTAGCTTCGTCTACCTATAGATTTA 882
consensus_13888#0 TGTGTTTTTTTTTTCGTGTTTTGGATTTGCATCTCATGTATTGTTTGAGTGACGAGTCAG 924
consensus_13888#5 ------------------------------------------------------------
consensus_13888#6 ------------------------------------------------------------
consensus_13888#2 ------------------------------------------------------------
consensus_13888#3 ------------------------------------------------------------
consensus_13888#4 ------------------------------------------------------------
consensus_13888#1 TTTGTTGCT-GCTCCCATCATCAGATCAGACCACCAGCTGTATGAGTATATACACAGTTT 941
consensus_13888#0 CGATCGGCTTGGCGTGGTGGTTTGTTTTGTCTTTCTTTTTCCTGGTTATAATCTTCATAG 984
consensus_13888#5 ------------------------------------------------------------
consensus_13888#6 ------------------------------------------------------------
consensus_13888#2 ------------------------------------------------------------
consensus_13888#3 ------------------------------------------------------------
consensus_13888#4 ------------------------------------------------------------
consensus_13888#1 GTATGCTAAATTCTTTCTAAATAAACATCCTTATGCAAATGTGTTGATAAAAA------- 994
consensus_13888#0 TTATAATCTTATAATTTTTTTTCTACATCAATATAAAATCTTGTATTAAAAAAAAAAAAA 1044
consensus_13888#5 ------------------------------------------------------------
consensus_13888#6 ------------------------------------------------------------
consensus_13888#2 ------------------------------------------------------------
consensus_13888#3 ------
consensus_13888#4 ------
consensus_13888#1 ------
consensus_13888#0 AAAAAA 1050
consensus_13888#5 ------
consensus_13888#6 ------
consensus_13888#2 ------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||