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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13909#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 707 fasta sequence
[CGATTAAAGTTGGGTAACGCCCAGGTTTTCCCNAGTCACCGACCNTTGTAAAACGACGCCCATTNACCNCCCGTAATNCGACTCACTATTAGGCCGAAATTGGTTACCGGCCCCCCCCTCCGAGGTCGACCCACGCGTCCGCTCTATGAGCCCATAGCCCGGAGGTCTCCAGCAGGGCTTCCTCCATGGGGTGGCTCCACTCCCTCTTCTCCCCTCTGAGGAAGCTCTGGGTTCTGCGCATTCCGCACNTCGAAACCGGAGGGGAATGCACATTCTGTACAAGGATGTCAAGTCTTGCCAGGATGAGGATGTGCATGTTCTATGGTCCATATTGGTGGATTCGCACCGTCACCCAGCTCTGATGAAGCTGAAGCTCTAGGGTTCTTGAAGAACAGAGCAAGGATGATGGCAGCTATGAATTTTCTGTGATTTTGCCGTTTACTCGGCCATTACCT-CTGTATAGAACAGCATGATTTCAATGGCATCAAGATTGAAGGGGC-AAAAAAAATAGAAGGACAAAATAGGCAGATGTTTATATGCCTTTCTTGTGTGTATTGATGTTTCTGTCTTGTGGCTTTGTGAGTGAGGTTGAAATGTCACCTTTGGTTGATGTGAATGCGAGTGAGGTTGAGTTTAATGTATTTGTATATACAGATGCTCTGATGCCTTACCTAATGGTATGAAGTTTGGTAGCAAAAAAAAAAAAA]
[+] EMBL AU055736 [CGATTAAAGTTGGGTAACGCCCAGGTTTTCCCNAGTCACCGACCNTTGTAAAACGACGCCCATTNACCNCCCGTAATNCGACTCACTATTAGGCCGAAATTGGTTACCGGCCCCCCCCTCCGAGGTCGACCCACGCGTCCGCTCTATGAGCCCATAGCCCGGAGGTCTCCAGCAGGGCTTCCTCCATGGGGTGGCTCCACTCCCTCTTCTCCCCTCTGAGGAAGCTCTGGGTTCTGCGCATTCCGCACNTCGAAACCGGAGGGGAATGCACATTCTGTACAAGGATGTCAAGTCTTGCCAGGATGAGGATGTGCATGTTCTATGGTCCATATTGGTGGATTCGCACCGTCACCCAGCTCTGATGAAGCTGAAGCTCTAGGGTTCTTGAAGAACAGAGCAAGGATGATGGCAGCTATGAATTTTCTGTGATTTTGCCGTTTACTCGGCCATTACCT CTGTATAGAACAGCATGATTTCAATGGCATCAAGATTGAAGGGGCAAAAAAAAATAGAAGGACAAAATAGGCAGATGTTTATATGCCTTTCTTGTGTGTATTGATGTTTCTGTCTTGTGGCTTTGTGAGTGAGGTTGAAATGTCACCTTTGGTTGATGTGAATGCGAGTGAGGTTGAGTTTAATGTATTTGTATATACAGATGCTCTGATGCCTTACCTAATGGTATGAAGTTTGGTAGCAAAAAAAAAAAAA]
[-] EMBL CF300389 [ ACATTCTGTACAAGGATGTCAAGTCTTGCCAGGATGAGGATGTGCATGTTCTATGGTCCATATTGGTGGATTCGCACCGTCACCCAGCTTTGATGAAGCTGAAGCTCTAGGGTTCTTGAAGAACAGAGCAAGGATGATGGCAGCTATGAATTTTCTGTGATTTTGCCGTTTACTCGGCCATTACCT CTGTATAGACCAGCATGATTTCAATGGCATCAAGATTGAAGGGGC AAAAAAAATAGAAGGACAAAATAGGCACATGTTTATATGCCTTTCTTGTGTGTATTGATGTTTCTGTCTTGTGGCTTTGTGAGTGAGGTTGAAATGTCACCTTTGGTTGATGTGAATGCGAGTGAGGTTGAGTTTAATGTATTTGTATATACACATGCTCTGATGCCTTACCTAATGGTATGAAGTTTGGTAGCAAAAAAA ]
[+] EMBL AU055995 [ CAAGGATGTCAAGTCTTGCCCGGATGAGGATGTGCATGTTCTATGGTCCATATTGGTGGATTCGCACCGTCACCCAGCTCTGATGAAGCTGAAGCTCTAGGGTTCTTGAAGAACAGAGCAAGGATGATGGCAGCTATGAATTTTCTGTGATTTTGCCGTTTACTCGGCCATTACCT CTGTATAGAACAGCATGATTTCAATGGCATCAAGATTGAAGGGGCAAAAAAAAATAGAAGGACAAAATAGGCAGATGTTTATATGCCTTTCTTGTGTGTATTGATGTTTCTGTCTTGTGGCTTTGTGAGTGAGGTTGAAATGTCACCTTTGGTTGATGTGAATGCGAGTGAGGTTGAGTTTAATGTATTTGTATATACAGATGCTCTGATGCCTTACCTAATGGTATGAAGTTTGGTNGCAAAAAAAAAAAAA]
[+] EMBL AU096316 [ TTGGTGGATTCGCACCGTCACCCAGCTCTGATGAANCTGAAGCTCTAGGGTTCTTGAAGAACAGAGCAAGGATGATGGCAGCTATGAATTTTCTGTGATTTTGCCGTTTACTCGGCCATTACCTCCTGTATAGAACAGCATGATTTCAATGGCATCAAGATTGAAGGGGC AAAAAAAATAGAAGGACAAAATAGGCAGATGTTTATATGCCTTTCTTGTGTGTATTGATGTTTCTGTCTTGTGGCTTTGTGAGTGAGGTTGAAATGTCACCTTTGGTTGATGTGAATGCGAGTGAGGTTGAGTTTAATGTATTNGTATATACAGATGCTCTGATGCCTTACCTAATGGTATGAAGTTTGGTAGCACGTAAAAAA ]
[-] EMBL CF300808 [ AAGCTCTAGGGTTCTTGAAGAACAGAGCAAGGATGATGGCAGCTATGAATTTTCTGTGATTTTGCCGTTTACTCGGCCATTACCT CTGTATAGAACAGCATGATTTCAATGGCATCAAGATTGAAGGGGC AAAAAAAATAGAAGGACAAAATAGGCAGATGTTTATATGCCTTTCTTGTGTGTATTGATGTTTCTGTCTTGTGGCTTTGTGAGTGAGGTTGAAATGTCACCTTTGGTTGATGTGAATGCGAGTGAGGTTGAGTTTAATGTATTTGTATATACAGATGCTCTGATGCCTTACCTAATGGTATGAAGTTTGGTAGCACGTAAAAAAtat]
consensusID : consensus_13909#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 630 fasta sequence
[GCAAACCTGATGGTTACTTCCTCTCTAACTACCCATCCTTTTATTTCTTTTCTTTTGCATAGCTTGCTCCATTCCTCCTTTCACCTCCTCTCTATGAGGCCATAGCCGGAGGTCTCAGCAGGGCTTCCTCATGGGGTGGCTCCACTCCCTCTTCTCCCCTCTGAGGAAGCTCTGGGTTCGTGCGCATTCCGCACGTCGAAACCGGAGGGGAATGCACATTCTGTACAAGGATGTCAAGTCTTGCCAGGATGAGGATGTGCATGTTCTATGGTCCATATTGGTGGATTCGCACCGTCACCCAGCTCTGATGAAGCTGAAGCTCTAGGGTTCTTGAAGAACAGAGCAGGGATGATGGCAGCTATGAATTTTCTGTGATTTTGCCGTTTACTCGGCCATTACCTCTGTATAGAACAGCATGATTTCAATGGCATCAAGATTGAAGGGGCAAAAAAAATAGAAGGACAAAATAGGCAGATGTTTATATGCCTTTCTTGTGTGTATTGATGTTTCTGTCTTGTGGCTTTGTGAGTGAGGTTGAAATGTCACCTTTGGTTGATGTGAATGCGAGTGAGGTTGAGTTTAATGTATTTGTATATACAGATGCTCTGATGCCTTACCTAATGGTATGAA]
[+] EMBL AK061623 [GCAAACCTGATGGTTACTTCCTCTCTAACTACCCATCCTTTTATTTCTTTTCTTTTGCATAGCTTGCTCCATTCCTCCTTTCACCTCCTCTCTATGAGGCCATAGCCGGAGGTCTCAGCAGGGCTTCCTCATGGGGTGGCTCCACTCCCTCTTCTCCCCTCTGAGGAAGCTCTGGGTTCGTGCGCATTCCGCACGTCGAAACCGGAGGGGAATGCACATTCTGTACAAGGATGTCAAGTCTTGCCAGGATGAGGATGTGCATGTTCTATGGTCCATATTGGTGGATTCGCACCGTCACCCAGCTCTGATGAAGCTGAAGCTCTAGGGTTCTTGAAGAACAGAGCAGGGATGATGGCAGCTATGAATTTTCTGTGATTTTGCCGTTTACTCGGCCATTACCTCTGTATAGAACAGCATGATTTCAATGGCATCAAGATTGAAGGGGCAAAAAAAATAGAAGGACAAAATAGGCAGATGTTTATATGCCTTTCTTGTGTGTATTGATGTTTCTGTCTTGTGGCTTTGTGAGTGAGGTTGAAATGTCACCTTTGGTTGATGTGAATGCGAGTGA ]
[+] EMBL AK120337 [ CATTCCTCCTTTCACCTCCTCTCTATGAGGCCATAGCCGGAGGTCTCAGCAGGGCTTCCTCATGGGGTGGCTCCACTCCCTCTTCTCCCCTCTGAGGAAGCTCTGGGTTCGTGCGCATTCCGCACGTCGAAACCGGAGGGGAATGCACATTCTGTACAAGGATGTCAAGTCTTGCCAGGATGAGGATGTGCATGTTCTATGGTCCATATTGGTGGATTCGCACCGTCACCCAGCTCTGATGAAGCTGAAGCTCTAGGGTTCTTGAAGAACAGAGCAAGGATGATGGCAGCTATGAATTTTCTGTGATTTTGCCGTTTACTCGGCCATTACCTCTGTATAGAACAGCATGATTTCAATGGCATCAAGATTGAAGGGGCAAAAAAAATAGAAGGACAAAATAGGCAGATGTTTATATGCCTTTCTTGTGTGTATTGATGTTTCTGTCTTGTGGCTTTGTGAGTGAGGTTGAAATGTCACCTTTGGTTGATGTGAATGCGAGTGAGGTTGAGTTTAATGTATTTGTATATACAGATGCTCTGATGCCTTACCTAATGGTATGAA]
consensusID : consensus_13909#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 527 fasta sequence
[CATGGA-TGAAGGAGTAGAAAATTTCTCCTTTCACCTCCTCTCTATGAGGCCATAGCCGG-AGGTCTCAGCAGGGCTTCCTCATGGGGTGGCTCCACTCCCTCTTCTCCCCTCTGAGGAAGCTCTGGGTTCGTGCGCATTCCGCACGTCGAAACCGGAGGGG-AATGCACATTCTGTACAAGGATGTCAAGTCTTGCCAGGATGAGGATGTGCATGTTCTATGGTCCATATTGGTGGATTCGCACCGTCACCCAGCTCTGATGAAGCTGAAGCTCTAGGGTTCTTGAAGAACAGAGCAAGGATGATGGCAGCTATGAATTTTCTGTGATTTTGCCGTTTACTCGGCCATTACCTCTGTATAGAACAGCATGATTTCAATGGCATCAAGATTGAAGGGGC-AAAAAAAATAGAAGGACAAAATAGGCAGATGTTTAT-ATGCCTTTCTTGTGTGTATTGATGTTTCTGTCTTGTGGCTTTGTGAGTGAGGTTGAAATATCACCTTTGGTTGATGTGNAAAAAAAAAAAAAAAA]
[+] EMBL CF305268 [CATGGA TGAAGGAGTAGAAAATTTCTCCTTTCACCTCCTCTCTATGAGGCCATAGCCGG AGGTCTCAGCAGGGCTTCCTCATGGGGTGGCTCCACTCCCCCTTCTCCCCTCTGAGGAAGCTCTGGGTTCGTGCGCATTCCGCACGTCGAAACCGGAGGGG AATGCACATTCTGTACAAGGATGTCAAGTCTTGCCAGGATGAGGATGTGCATGTTCTATGGTCCATATTGGTGGATTCGCACCGTCACCCAGCTCTGATGAAGCTGAAGCTCTAGGGTTCTTGAAGAACAGAGCAAGGATGATGGCAGCTATGAATTTTCTGTGATTTTGCCGTTTACTCGGCCATTACCTCTGTATAGAACAGCATGATTTCAATGGCATCAAGATTGAAGGGGC AAAAAAAATAGAAGGACAAAATAGGCAGATGTTTAT ATGCCTTTCTTGTGTGTATTGATGTTTCTGTCTTGTGGCTTTGTGAGTGAGGTTGAAATATCACCTTTGGTTGATGTG ]
[+] EMBL CF300390 [ cTGGACTGAAGGAGTAGAAAATTCCTTTTTTCACCTCCTCTCTATGAGGCCATACCCGG AGGTCTCAGCAGGGCTTCCTCATGGGGTGGCTCCACTCCCTCTTCTCCCCTCTGAGGAAGCTCTGGGTTCGTGCGCATTCCGCACGTCGAAACCGGAGGGG AATGCACATTCTGTACAAGGATGTCAAGTCTTGCCAGGATGAGGATGTGCATGTTCTATGGTCCATATTGGTGGATTCGCACCGTCACCCAGCTCTGATGAAGCTGAAGCTCTAGGGTTCTTGAAGAACAGAGCAAGGATGATGGCAGCTATGAATTTTCTGTGATTTTGCCGTTTACTCGGCCATTACCTCTGTATAGAACAGCATGATTTCAATGGCATCAAGATTGAAGGGGC AAAAAAAATAGAAGGACAAAATAGGCAGATGTTTAT A ]
[+] EMBL CF301104 [ ACCTCCTCTCTATGAGGCCATAGCCGG AGGTCTCAGCAGGGCTTCCTCATGGGGTGGCTCCACTCCCTCTTCTCCCCTCTGAGGAAGCTCTGGGTTCGTGCGCATTCCGCACGTCGAAACCGGAGGGG AATGCACATTCTGTACAAGGATGTCAAGTCTTGCCAGGATGAGGATGTGCATGTTCTATGGTCCATATTGGTGGATTCGCACCGTCACCCAGCTCTGATGAAGCTGAAGCTCTAGGGTTCTTGAAGAACAGAGC ]
[+] EMBL OSS13458A [ TATGAGGCCATAGCCGG AGGTCTCAGCAGGGCTTCCTCATGGGGTGGCTCCACTCCCTCTTCTCCCCTCTGAGGAAGCTCTGGGTTCGTGCGCATTCCGCACGTCGAAACCGGAGGGGNAATGCACATTCTGTACAAGGATGTCAAGTCTTGCCAGGATGAGGATGTGCATGTTCTATGGTCCATATTGGTGGATTCGCACCGTCACCCAGCTCTGATGAAGCTGAAGCTCTAGGGTTCTTGAAGAACAGAGCAAGGATGATGGCAGCTATGAATTTTCTGTGATTTTGCCGTTTACTCGGCCATTACCTCTGTATAGAACAGCATGATTTCAATGGCATCAAGATTGAAGGGGC AAAAAAAATAGAAGGACAAAATAGGCAGATGNTTAT ATGCCTTTNTTGTGTGTATTGATGTTTCTGNCTTGTGGCT ]
[+] EMBL AU065986 [ AGGCCATAGCCGGNAGGTCTCAGCAGGGCTTCCTCATGGGGTGGCTCCACTCCCTCTTCTCCCCTCTGAGGAAGCTCTGGGTTCGTGCGCATTCCGCACGTCGAAACCGGAGGGG AATGCACATTCTGTACAAGGATGTCAAGTCTTGCCAGGATGAGGATGTGCATGTTCTATGGTCCATATTGGTGGATTCGCACCGTCACCCAGCTCTGATGAAGCTGAAGCTCTAGGGTTCTTGAAGAACAGAGCAAGGATGATGGCAGCTATGAATTTTCTGTGATTTTGCCGTTTACTCGGCCATTACCTCTGTATAGAACAGCATGATTTCAATGGCATCAAGATTGAAGGGGC AAAAAAAATAGAAGGNCAAAATAGGCAGATGTTTATAATGCCTTTNTTGTGTGTATTGATGTTTCTGCCTTGTGGCTTTGTGAGTAAGGTTGAAATGTCACCTTTGGTTGATGGTNAAAAAAAAAAAAAAAA]
[+] EMBL AU055994 [ GCCATAGCCGGNAGGTCTCAGCAGGGCTTCCTCATGGGGTGGCTCCACNCCCTCTTCTCCCCTCTGAGGAAGCTCTGGGTTCGTGCGCATNCCGCACGTCGAAACCGGAGGGG AATGCACATTCTGTACAAGGATGTCAAGTCTTGCCAGGATGAGGATGTGCATGTTCTATGGTCCATATTGGTGGATTCGCACCGTCACCCAGCTCTGATGAAGCTGAAGCTCTAGGGTTCTTGAAGAACAGAGCAAGGATGATGGCAGCTATGAATTTTCTGTGATTTTGCCGTTTACTCGGCCATTACCTCTGTATAGAACAGCATGATTTCAATGGCATCAAGATTGAAGGGGCAAAAAAAAATAGAAGGACAAAATAGGCAGATGTTTAT ATGCCTTTCTTGTGTGTATTGATGTTTCTGTCTTGTGGCTTTGTGAGTGAGGTTGAA ]
[+] EMBL AU055735 [ GCCATAGCCGG AGGTCTCAGCAGGGCTTCCTCATGGGGTGGCTCCACTCCCTCTTCTCCCCTCTGAGGAAGCTCTGGGTTCGTGCGCATTCCGCACGTCGAAACCGGAGGGG AATGCACATTCTGTACAAGGATGTCAAGTCTTGCCAGGATGAGGATGTGCATGTTCTATGGTCCATATTGGTGGATTCGCACCGTCACCCAGCTCTGATGAAGCTGAAGCTCTAGGGTTCTTGAAGAACAGAGCAAGGATGATGGCAGCTATGAATTTTCTGTGATTTTGCCGTTTACTCGGCCATTACCTCTGTATAGAACAGCATGATTT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13909#1 --------------------------------------GCAAACCTGATGGTTACTTCCT 22
consensus_13909#2 ------------------------------------------------------------
consensus_13909#0 CGATTAAAGTTGGGTAACGCCCAGGTTTTCCCNAGTCACCGACCNTTGTAAAACGACGCC 60
consensus_13909#1 CTCTAACTACCCATCCTTTTATTTCTTTTCTTTTGCATA--GCTTGCTCCATTCCTCCTT 80
consensus_13909#2 ----------------------------CATGGATGAAG--GAGTAGAAAATTTCTCCTT 30
consensus_13909#0 CATTNACCNCCCGTAATNCGACTCACTATTAGGCCGAAATTGGTTACCGGCCCCCCCCTC 120
* * * * ***
consensus_13909#1 T------------CACCTCCTCTCTATGAGGCCATAGCC-GGAGGTCTC-AGCAGGGCTT 126
consensus_13909#2 T------------CACCTCCTCTCTATGAGGCCATAGCC-GGAGGTCTC-AGCAGGGCTT 76
consensus_13909#0 CGAGGTCGACCCACGCGTCCGCTCTATGAGCCCATAGCCCGGAGGTCTCCAGCAGGGCTT 180
* * *** ********* ******** ********* **********
consensus_13909#1 CCTC-ATGGGGTGGCTCCACTCCCTCTTCTCCCCTCTGAGGAAGCTCTGGGTTCGTGCGC 185
consensus_13909#2 CCTC-ATGGGGTGGCTCCACTCCCTCTTCTCCCCTCTGAGGAAGCTCTGGGTTCGTGCGC 135
consensus_13909#0 CCTCCATGGGGTGGCTCCACTCCCTCTTCTCCCCTCTGAGGAAGCTCTGGGTTC-TGCGC 239
**** ************************************************* *****
consensus_13909#1 ATTCCGCACGTCGAAACCGGAGGGGAATGCACATTCTGTACAAGGATGTCAAGTCTTGCC 245
consensus_13909#2 ATTCCGCACGTCGAAACCGGAGGGGAATGCACATTCTGTACAAGGATGTCAAGTCTTGCC 195
consensus_13909#0 ATTCCGCACNTCGAAACCGGAGGGGAATGCACATTCTGTACAAGGATGTCAAGTCTTGCC 299
********* **************************************************
consensus_13909#1 AGGATGAGGATGTGCATGTTCTATGGTCCATATTGGTGGATTCGCACCGTCACCCAGCTC 305
consensus_13909#2 AGGATGAGGATGTGCATGTTCTATGGTCCATATTGGTGGATTCGCACCGTCACCCAGCTC 255
consensus_13909#0 AGGATGAGGATGTGCATGTTCTATGGTCCATATTGGTGGATTCGCACCGTCACCCAGCTC 359
************************************************************
consensus_13909#1 TGATGAAGCTGAAGCTCTAGGGTTCTTGAAGAACAGAGCAGGGATGATGGCAGCTATGAA 365
consensus_13909#2 TGATGAAGCTGAAGCTCTAGGGTTCTTGAAGAACAGAGCAAGGATGATGGCAGCTATGAA 315
consensus_13909#0 TGATGAAGCTGAAGCTCTAGGGTTCTTGAAGAACAGAGCAAGGATGATGGCAGCTATGAA 419
**************************************** *******************
consensus_13909#1 TTTTCTGTGATTTTGCCGTTTACTCGGCCATTACCTCTGTATAGAACAGCATGATTTCAA 425
consensus_13909#2 TTTTCTGTGATTTTGCCGTTTACTCGGCCATTACCTCTGTATAGAACAGCATGATTTCAA 375
consensus_13909#0 TTTTCTGTGATTTTGCCGTTTACTCGGCCATTACCTCTGTATAGAACAGCATGATTTCAA 479
************************************************************
consensus_13909#1 TGGCATCAAGATTGAAGGGGCAAAAAAAATAGAAGGACAAAATAGGCAGATGTTTATATG 485
consensus_13909#2 TGGCATCAAGATTGAAGGGGCAAAAAAAATAGAAGGACAAAATAGGCAGATGTTTATATG 435
consensus_13909#0 TGGCATCAAGATTGAAGGGGCAAAAAAAATAGAAGGACAAAATAGGCAGATGTTTATATG 539
************************************************************
consensus_13909#1 CCTTTCTTGTGTGTATTGATGTTTCTGTCTTGTGGCTTTGTGAGTGAGGTTGAAATGTCA 545
consensus_13909#2 CCTTTCTTGTGTGTATTGATGTTTCTGTCTTGTGGCTTTGTGAGTGAGGTTGAAATATCA 495
consensus_13909#0 CCTTTCTTGTGTGTATTGATGTTTCTGTCTTGTGGCTTTGTGAGTGAGGTTGAAATGTCA 599
******************************************************** ***
consensus_13909#1 CCTTTGGTTGATGTGAATGCGAGTGAGGTTGAGTTTAATGTATTTGTATATACAGATGCT 605
consensus_13909#2 CCTTTGGTTGATGTGNAAAAAAAAAAAAAAAA---------------------------- 527
consensus_13909#0 CCTTTGGTTGATGTGAATGCGAGTGAGGTTGAGTTTAATGTATTTGTATATACAGATGCT 659
*************** * * * *
consensus_13909#1 CTGATGCCTTACCTAATGGTATGAA----------------------- 630
consensus_13909#2 ------------------------------------------------
consensus_13909#0 CTGATGCCTTACCTAATGGTATGAAGTTTGGTAGCAAAAAAAAAAAAA 707
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||