cluster # 1391

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Oryza sativa
cluster # 1391 cluster # 1391 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1391#0 length = 606 sequences # 1

consensus_1391#1 length = 360 sequences # 1

consensusID : consensus_1391#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 606
fasta sequence

                              [CCGAACAGCTCACGCTTCTCCCGAAGCAAAGCCACAGCGGCCCAAACCCTAAACCCCCTCGAAGCTCCATCCAATGGCGGGGTGGCCGGCGGCGGAGGCCGCGGGGGCGCTGGTGGTGGCGATCCTCGCGGCGGCGGCGGGCGGCGCGGCGGGGAAGACGACGATCGAGCCGTGCGCGGGGGCGGACACGTGCGCCGCGCTGCTCGGGTACACGCTGTACGCGGACATGAAGGTGTCGGAGGTGGCGGCGCTGTTCGGCGCCGACCCGAGGGCCGTGCTCGCCGCGAACGCGCTCGACTTCGCCTCCCCCGGTGCCGCCAACCGCATCCTCCCCGCGGGGCTCCCGCTCCGCGTCCCCACCCGGTGCGCCTGCTCCGACGGAGTCCGCAAGTCCGTCGACGTGCGCTACTCCGCGCGGCCCGACGACACGGTGGAGTCCGGCAGCGACGGCGACTTCGACGGAGTCGTCTCCGGCGACCAGACCGAGACGCGTACGGTGTCTCCGGCGAGGACCGCGACGGGCCGGTCGAAAGCCAAGGCACTGTCGAGGAACCGAATCCCCTGGGCCTGCATCAGCTCCACAGAGAATAGCCCTCCCGGCCGGAA]

[+] EMBL CA753959             [CCGAACAGCTCACGCTTCTCCCGAAGCAAAGCCACAGCGGCCCAAACCCTAAACCCCCTCGAAGCTCCATCCAATGGCGGGGTGGCCGGCGGCGGAGGCCGCGGGGGCGCTGGTGGTGGCGATCCTCGCGGCGGCGGCGGGCGGCGCGGCGGGGAAGACGACGATCGAGCCGTGCGCGGGGGCGGACACGTGCGCCGCGCTGCTCGGGTACACGCTGTACGCGGACATGAAGGTGTCGGAGGTGGCGGCGCTGTTCGGCGCCGACCCGAGGGCCGTGCTCGCCGCGAACGCGCTCGACTTCGCCTCCCCCGGTGCCGCCAACCGCATCCTCCCCGCGGGGCTCCCGCTCCGCGTCCCCACCCGGTGCGCCTGCTCCGACGGAGTCCGCAAGTCCGTCGACGTGCGCTACTCCGCGCGGCCCGACGACACGGTGGAGTCCGGCAGCGACGGCGACTTCGACGGAGTCGTCTCCGGCGACCAGACCGAGACGCGTACGGTGTCTCCGGCGAGGACCGCGACGGGCCGGTCGAAAGCCAAGGCACTGTCGAGGAACCGAATCCCCTGGGCCTGCATCAGCTCCACAGAGAATAGCCCTCCCGGCCGGAA]




>consensus_1391#0
CCGAACAGCTCACGCTTCTCCCGAAGCAAAGCCACAGCGGCCCAAACCCTAAACCCCCTC
GAAGCTCCATCCAATGGCGGGGTGGCCGGCGGCGGAGGCCGCGGGGGCGCTGGTGGTGGC
GATCCTCGCGGCGGCGGCGGGCGGCGCGGCGGGGAAGACGACGATCGAGCCGTGCGCGGG
GGCGGACACGTGCGCCGCGCTGCTCGGGTACACGCTGTACGCGGACATGAAGGTGTCGGA
GGTGGCGGCGCTGTTCGGCGCCGACCCGAGGGCCGTGCTCGCCGCGAACGCGCTCGACTT
CGCCTCCCCCGGTGCCGCCAACCGCATCCTCCCCGCGGGGCTCCCGCTCCGCGTCCCCAC
CCGGTGCGCCTGCTCCGACGGAGTCCGCAAGTCCGTCGACGTGCGCTACTCCGCGCGGCC
CGACGACACGGTGGAGTCCGGCAGCGACGGCGACTTCGACGGAGTCGTCTCCGGCGACCA
GACCGAGACGCGTACGGTGTCTCCGGCGAGGACCGCGACGGGCCGGTCGAAAGCCAAGGC
ACTGTCGAGGAACCGAATCCCCTGGGCCTGCATCAGCTCCACAGAGAATAGCCCTCCCGG
CCGGAA

consensusID : consensus_1391#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 360
fasta sequence

                              [CCTCGCGGCGGCGGCGGGCGGCGCGGCGGGGAAGACGACGATCGAGCCGTGCGCGGGGGCGGACACGTGCGCCGCGCTGCTCGGGTACACGCTGTACGCGGACATGAAGGTGTCGGAGGTGGCGGCGCTGTTCGGCGCCGACCCGAGGGCCGTGCTCGCCGCGAACGCGCTCGACTTCGCCTCCCCCGGCGCCGCCAACCGCATCCTCCCCGCGGGGCTCCCGCTCCGCGTCCCCACCCGGTGCGCCTGCTCCGACGGCGTCCGCAAGTCCGTCGCCGTGCGCTTACTTNCGCGCGCCCCGCCGACANGNTGGCGTCCGTTCGCCGACGTTCGTCTTCCGCCGAGGGACCCCGAAGGCGC]

[+] EMBL OSC424               [CCTCGCGGCGGCGGCGGGCGGCGCGGCGGGGAAGACGACGATCGAGCCGTGCGCGGGGGCGGACACGTGCGCCGCGCTGCTCGGGTACACGCTGTACGCGGACATGAAGGTGTCGGAGGTGGCGGCGCTGTTCGGCGCCGACCCGAGGGCCGTGCTCGCCGCGAACGCGCTCGACTTCGCCTCCCCCGGCGCCGCCAACCGCATCCTCCCCGCGGGGCTCCCGCTCCGCGTCCCCACCCGGTGCGCCTGCTCCGACGGCGTCCGCAAGTCCGTCGCCGTGCGCTTACTTNCGCGCGCCCCGCCGACANGNTGGCGTCCGTTCGCCGACGTTCGTCTTCCGCCGAGGGACCCCGAAGGCGC]




>consensus_1391#1
CCTCGCGGCGGCGGCGGGCGGCGCGGCGGGGAAGACGACGATCGAGCCGTGCGCGGGGGC
GGACACGTGCGCCGCGCTGCTCGGGTACACGCTGTACGCGGACATGAAGGTGTCGGAGGT
GGCGGCGCTGTTCGGCGCCGACCCGAGGGCCGTGCTCGCCGCGAACGCGCTCGACTTCGC
CTCCCCCGGCGCCGCCAACCGCATCCTCCCCGCGGGGCTCCCGCTCCGCGTCCCCACCCG
GTGCGCCTGCTCCGACGGCGTCCGCAAGTCCGTCGCCGTGCGCTTACTTNCGCGCGCCCC
GCCGACANGNTGGCGTCCGTTCGCCGACGTTCGTCTTCCGCCGAGGGACCCCGAAGGCGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1391#0      CCGAACAGCTCACGCTTCTCCCGAAGCAAAGCCACAGCGGCCCAAACCCTAAACCCCCTC 60
consensus_1391#1      ------------------------------------------------------------
                                                                                  

consensus_1391#0      GAAGCTCCATCCAATGGCGGGGTGGCCGGCGGCGGAGGCCGCGGGGGCGCTGGTGGTGGC 120
consensus_1391#1      ------------------------------------------------------------
                                                                                  

consensus_1391#0      GATCCTCGCGGCGGCGGCGGGCGGCGCGGCGGGGAAGACGACGATCGAGCCGTGCGCGGG 180
consensus_1391#1      ---CCTCGCGGCGGCGGCGGGCGGCGCGGCGGGGAAGACGACGATCGAGCCGTGCGCGGG 57
                         *********************************************************

consensus_1391#0      GGCGGACACGTGCGCCGCGCTGCTCGGGTACACGCTGTACGCGGACATGAAGGTGTCGGA 240
consensus_1391#1      GGCGGACACGTGCGCCGCGCTGCTCGGGTACACGCTGTACGCGGACATGAAGGTGTCGGA 117
                      ************************************************************

consensus_1391#0      GGTGGCGGCGCTGTTCGGCGCCGACCCGAGGGCCGTGCTCGCCGCGAACGCGCTCGACTT 300
consensus_1391#1      GGTGGCGGCGCTGTTCGGCGCCGACCCGAGGGCCGTGCTCGCCGCGAACGCGCTCGACTT 177
                      ************************************************************

consensus_1391#0      CGCCTCCCCCGGTGCCGCCAACCGCATCCTCCCCGCGGGGCTCCCGCTCCGCGTCCCCAC 360
consensus_1391#1      CGCCTCCCCCGGCGCCGCCAACCGCATCCTCCCCGCGGGGCTCCCGCTCCGCGTCCCCAC 237
                      ************ ***********************************************

consensus_1391#0      CCGGTGCGCCTGCTCCGACGGAGTCCGCAAGTCCGTCGACGTGCGCTA--CTCCGCGCGG 418
consensus_1391#1      CCGGTGCGCCTGCTCCGACGGCGTCCGCAAGTCCGTCGCCGTGCGCTTACTTNCGCGCGC 297
                      ********************* **************** ********    * ****** 

consensus_1391#0      CCCGACGACACGGTGGAGTCCGGCAGC-GACGG-CGACTTCGACGGAGTCGTCTCCGGCG 476
consensus_1391#1      CCCGCCGACANGNTGGCGTCCGTTCGCCGACGTTCGTCTTCCGCCGAGG-GACCCCGAAG 356
                      **** ***** * *** *****   ** ****  ** ****  * ***  * * ***  *

consensus_1391#0      ACCAGACCGAGACGCGTACGGTGTCTCCGGCGAGGACCGCGACGGGCCGGTCGAAAGCCA 536
consensus_1391#1      GCGC-------------------------------------------------------- 360
                       *                                                          

consensus_1391#0      AGGCACTGTCGAGGAACCGAATCCCCTGGGCCTGCATCAGCTCCACAGAGAATAGCCCTC 596
consensus_1391#1      ------------------------------------------------------------
                                                                                  

consensus_1391#0      CCGGCCGGAA 606
consensus_1391#1      ----------