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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13915#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1449 fasta sequence
[AGTGAGCCACCACCAGAGGCGTGACCGAATCGGCTAGCGAGTGAGAGAGGAGGAGCAGTTCACAGTTGCAGTTCCACGCTCGCAGTAGTGTCCAGAGCAGAGCGCGAGGGAAGAGGGCGCAGAGAGCAGGAGGAG----AGGCAGCCATGGGCGAGGAGGAGAAGGTGAAGGAGGAGGCGGCGGCGGAGAAGGGGAAGGAGGCGGCGGTAGCGGAGGAGAAGGAGGCGGCGGCGGCAGGGGAGGAGAAGAAGGAGAACGCGCCGCCNCCNCCGCCACCGCCGGAGGAGGTGGTGATGCGGGTCTTCATGCACTGCGAAGGGTGCGCTCGCAAGGTCAAGAAGATACTCAGGGGATTTGATGGAGTGGAAGATGTTGTCGCGGACTCGAAAGCTCACAAGGTGATCGTGAAGGGAAAGAAGGCTGCTGCTGACCCAATGAAGGTGGTGCACCGTGTGCAGAAGAAGACAGGCCGCAAGGTTGAGCTTCTATCACCGATGCCACCTCCGGTGGAGGAGAAGAAGGAAGAGGAGAAAAAGGAAGAGCCCGAGCCACCAAAACCTGAAGAGAAGGAGCCAACGGTGATAGCGGTGGTCCTGAAGGTGCATATGCATTGTGAGGCCTGTGCGCAAGTTATCAGGAAGAAAATCCTCAAGATGAAAGGAGTGCAATCAGCAGAGCCAGACATGAAGGCATCACAAGTGACGGTGAAGGGTGTGTTTGAGGAGTCAAAGCTCACCGATTACGTGCATAAACGCATTGGTAAGAATGCCGCCGTTGTAAAATCTGAACCAGCCCCTCCCCCTGAGAATGCTGGCGATGCAAATGCAAAGGATGACAAGAAGGCGGCCGAAGGTGGCGAGGAGAAGGACGAGAGCAAGGAGGAAAAGAAGGAAGGTGATGATGAGAAAGAAAAGGAGAAAGAGAAGGATGATAGCAATGCTGCCGAGGTTGAAGAGAAGGACAAAGAGAAAGATCCTTCAGCCTTGGCTGCTGCTAATCTGTATATGCATTACCCAAGATTCAGCAACCCTGGTGGATATGGTGTTCCTGGCTACGCATACCCGTATGCGCCGCAGCTCTTCAGTGACGAGAATCCAAACGCCTGTGTTGTGATGTGAGAAGGTGAGAACAATGAGGTCCAAA-TTGGGGGAAATAAGAGTGAGACTAC-GCATCCCCTAACTTCTGGGGGGTGAAATCGGCTGTTCGAAGATAGGATCAAGCAAGCCATTTTGGTTTCTAACTGTTCTCATGTAATTAAAATGTGAACTGTTGGCCTCGTCTCTATTGTCGGCCTTCATGGACATTATATTATGTAAGCTAAAAATGTAGGATTTTGCTTTGAGCTTTCTCTCTATTGGCTTTCCTTTTGTAAAAATTGTATAATATATATATTGTTAGTGTTGAAATAGCTTGTGTATCCTTGTTATTGTCTCAGGAGGAGCACCCTCTAGT]
[+] EMBL AK073949 [AGTGAGCCACCACCAGAGGCGTGACCGAATCGGCTAGCGAGTGAGAGAGGAGGAGCAGTTCACAGTTGCAGTTCCACGCTCGCAGTAGTGTCCAGAGCAGAGCGCGAGGGAAGAGGGCGCAGAGAGCAGGAGGAG AGGCAGCCATGGGCGAGGAGGAGAAGGTGAAGGAGGAGGCGGCGGCGGAGAAGGGGAAGGAGGCGGCGGTAGCGGAGGAGAAGGAGGCGGCGGCGGCAGGGGAGGAGAAGAAGGAGAACGCGCCGCCNCCNCCGCCACCGCCGGAGGAGGTGGTGATGCGGGTCTTCATGCACTGCGAAGGGTGCGCTCGCAAGGTCAAGAAGATACTCAGGGGATTTGATGGAGTGGAAGATGTTGTCGCGGACTCGAAAGCTCACAAGGTGATCGTGAAGGGAAAGAAGGCTGCTGCTGACCCAATGAAGGTGGTGCACCGTGTGCAGAAGAAGACAGGCCGCAAGGTTGAGCTTCTATCACCGATGCCACCTCCGGTGGAGGAGAAGAAGGAAGAGGAGAAAAAGGAAGAGCCCGAGCCACCAAAACCTGAAGAGAAGGAGCCAACGGTGATAGCGGTGGTCCTGAAGGTGCATATGCATTGTGAGGCCTGTGCGCAAGTTATCAGGAAGAAAATCCTCAAGATGAAAGGAGTGCAATCAGCAGAGCCAGACATGAAGGCATCACAAGTGACGGTGAAGGGTGTGTTTGAGGAGTCAAAGCTCACCGATTACGTGCATAAACGCATTGGTAAGAATGCCGCCGTTGTAAAATCTGAACCAGCCCCTCCCCCTGAGAATGCTGGCGATGCAAATGCAAAGGATGACAAGAAGGCGGCCGAAGGTGGCGAGGAGAAGGACGAGAGCAAGGAGGAAAAGAAGGAAGGTGATGATGAGAAAGAAAAGGAGAAAGAGAAGGATGATAGCAATGCTGCCGAGGTTGAAGAGAAGGACAAAGAGAAAGATCCTTCAGCCTTGGCTGCTGCTAATCTGTATATGCATTACCCAAGATTCAGCAACCCTGGTGGATATGGTGTTCCTGGCTACGCATACCCGTATGCGCCGCAGCTCTTCAGTGACGAGAATCCAAACGCCTGTGTTGTGATGTGAGAAGGTGAGAACAATGAGGTCCAAA TTGGGGGAAATAAGAGTGAGACTAC GCATCCCCTAACTTCTGGGGGGTGAAATCGGCTGTTCGAAGATAGGATCAAGCAAGCCATTTTGGTTTCTAACTGTTCTCATGTAATTAAAATGTGAACTGTTGGCCTCGTCTCTATTGTCGGCCTTCATGGACATTATATTATGTAAGCTAAAAATGTAGGATTTTGCTTTGAGCTTTCTCTCTATTGGCTTTCCTTTTGTAAAAATTGTATAATATATATATTGTTAGTGTTGAAATAGCTTGTGTATCCTTGTTATTGTCTCAGGAGGAGCACCCTCTAGT]
[+] EMBL OSS15492A [ GTTCACAGTTGCAGTTCCACGCTCGCAGTAGTGTCCAGAGCAGAGCGCGAGGGAAGAGGGCGCAGAGAGCAGGAGGAGAGGCAGGCAGCCATGGGCGAGGAGGAGAAGGTGAAGGAGGAGGCGGCGGCGGAGAAGGGGAAGGAGGCGGCGGTAGCGGAGGAGAAGGAGGCGGCGNCGGCAGGGGAGGAGAAGAAGGAGGACGCGCCGTCGACGACGACACCGNCGGAGGAGGTGGTGATGCGGGTCTTCATGCACTGCGAAGGGTGCGCTCGCAAGGTCAAGAAGATACTCAGGGGATTTGATGGAGTGGAAGNTGTTGTCGCGGACTCGAAAGCTCACANTGTGATCGTGA ]
[+] EMBL CB684953 [ CAAGGTGATCTTGAAGGGAAAGAAGGCTGCTGCTGACCCAATGAAGGTGGTGCACCGTGTGCAGAAGAAGACAGGCCGCAAGGTTGAGCTTCTATCACCGATGCCACCTCCGGTGGAGGAGAAGAAGGAAGAGGAGAAAAAGGAAGAGCCCGAGCCACCAAAACCTGAAGAGAAGGAGCCAACGGTGATAGCGGTGGTCCTGAAGGTGCATATGCATTGTGAGGCCTGTGCGCAAGTTATCAGGAAGAAAATCCTCAAGATGAAAGGAGTGCAATCAGCAGAGCCAGACATGAAGGCATCACAAGTGACGGTGAAGGGTGTGTTTGAGGAGTCAAAGCTCACCGATTACGTGCATAAACGCATTGGTAAGAATGCCGCCGTTGTAAAATCTGAACCAGCCCCTCCCCCTGAGAATGCTGGCGATGCAAATGCAAAGGATGACAAGAAGGCGGCCGAAGGTGGCGAGGAGAAGGACGAGAGCAAGGAGGAAAAGAAGGAAGGTGATGATGAGAAAGAAAAGGAGAAAGAGAAGGATGATAGCAATGCTGCCGAGGTTGAAGAGAATGACAAAGAGAAAGATCCTTCAGCCTTGGCTGCTGCTAATCTGTATATGCATTACCCAAGATTCAGCAACCCTGGTGGATATGGTGTTCCTGGCTACGCATACCCGTATGCGCCGCAGCTCTTCAGTGACGAGAATCCAAACGCCTGTGTTGTGATGTGAGAAng ]
[+] EMBL AU166733 [ GCTTCTATCACCGATGCCACCTCCGGTGGAGGAGAAGAAGGAAGAGGAGAAAAAGGAAGAGCCCGAGCCACCAAAACCTGAAGAGAAGGAGCCAACGGTGATAGCGGTGGTCCTGAAGGTGCATATGCATTGTGAGGCCTGTGCGCAAGTTATCAGGAAGAAAATCCTCAAGATGAAAGGAGTGCAATCAGCAGAGCCAGACATGAAGGCATCACAAGTGACGGTGAAGGGTGTGTTTGAGGAGTCAAAGCTCACCGATTACGTGCATAAACGCATTGGTAAGAATGCCGCCGTTGTAAAATCTGAACCAGCCCCTCCCCCTGAGAATGCTGGCGATGCAAATGCAAAGGATGACAAGAAGGCGGCCGAAGGTGGCGAGGAGAAGGACGAGAGCAAGGAGGAAAAGAAGGAAGGTGATGATGAGAAAAAAAAaa ]
[-] EMBL CB665317 [ CAACGGTGATAGCGGTGGTCCTGAAGGTGCATATGCATTGTGAGGCCTGTGCGCAAGTTATCAGGAAGAAAATCCTCAAGATGAAAGGAGTGCAATCAGCAGAGCCAGACATGAAGGCATCACAAGTGACGGTGAAGGGTGTGTTTGAGGAGTCAAAGCTCACCGATTACGTGCATAAACGCATTGGTAAGAATGCCGCCGTTGTAAAATCTGAACCAGCCCCTCCCCCTGAGAATGCTGGCGATGCAAATGCAAAGGATGACAAGAAGGCAGCCGAAGGTGGCGAGGAGAAGGACGAGAGCAAGGAGGAAAAGAAGGAAGGTGATGATGAGAAAGAAAAGGAGAAAGAGAAGGATGATAGCAATGCTGCCGAGGTTGAAGAGAAGGACAAAGAGAAAGATCCTTCAGCCTTGGCTGCTGCTAATCTGTATATGCATTACCCAAGATTCAGCAACCCTGGTGGATATGGTGTTCCTGGCTACGCATACCCGTATGCGCCGCAGCTCTTCAGTGACGAGAATCCAAACGCCTGTGTTGTGATGTGAGAAGGTGAGAACAATGAGGTCCAAA TTGGGGGAAATAAGAGTGAGACTAC GCATCCCCTAACTTCTGGGGGGTGAAATCGGCTGTTCGAAGATAGGATCAAGCAAGCCATTTTGGTTTCTAACTGTTCTCATGTAATTAAAATGTGAACTGTTGGCCTCGTCTCTATTGTCGGCCTTCATGGACATTATATTATGTAAGCTAAAAATGTAGGATTTTGCTTTGAGCTTTCTCTCTATTGGCTTTCCTTTTGTAAAAATTGTATAATATATATATTGTTAGTGTTGAAA ]
[-] EMBL CB684954 [ AGCAGAGCCAGACATGAAGGCATCACAAGTGACGGTGAAGGGTGTGTTTGAGGAGTCAAAGCTCACCGATTACGTGCATAAACGCATTGGTAAGAATGCCGCCGTTGTAAAATCTGAACCAGCCCCTCCCCCTGAGAATGCTGGTGATGCAAATGCAAAGGATGACAAGAAGGCGGCCGAAGGTGGTGAGGAGAAGGACGAGAGCAAGGAGGAAAAGAAGGAAGGTGATGATGAGAAAGAAAAGGAGAAAGAGAAGGATGATAGCAATGCTGCCGAGGTCGAAGAGAAGGACAAAGAGAAAGATCCTTCAGCCTTGGCTGCTGCTAATCTGTATATGCATTACCCAAGATTCAGCAACCCTGGTGGATATGGTGTTCCTGGCTACGCATACCCGTATGCGCCGCAGCTCTTCAGTGACGAGAATCCAAACGCTTGTGTTGTGATGTGAGAAGGTGAGAACAATGAGGTCCCAA TTGGGGGAAATAAGAGTGAGACTAC GCATCCCCTACCTTCTGGGGGGTGAAATCGGCTGTTGGAAGATAGGATCAAGCAAGCCATTTTGGTTTTTAACTGTTTTCATGTAATTAAAATGTGCACTGTTGGCCTGGTCTATATTGTCGGCCTTCATGGCCATTATATTATGTAAGCTAAAAATGTAGGATTTTGCTTTGAGCTTTCTCTCTAAGCGCTTTCCTCTT TAAGAGGCGCATAATATATATAT ]
[-] EMBL CB665316 [ AGCCAGACATGAAGGCATCACAAGTGACGGTGAAGGGTGTGTTTGAGGAGTCAAAGCTCACCGATTACGTGCATAAACGCATTGGTAAGAATGCCGCCGTTGTAAAATCTGAACCAGCCCCTCCCCCTGAGAATGCTGGCGATGCAAATGCAAAGGATGACAAGAAGGCAGCCGAAGGTGGCGAGGAGAAGGACGAGAGCAAGGAGGAAAAGAAGGAAGGTGATGATGAGAAAGAAAAGGAGAAAGAGAAGGATGATAGCAATGCTGCCGAGGTTGAAGAGAAGGACAAAGAGAAAGATCCTTCAGCCTTGGCTGCTGCTAATCTGTATATGCATTACCCAAGATTCAGCAACCCTGGTGGATATGGTGTTCCTGGCTACGCATACCCGTATGCGCCGCAGCTCTTCAGTGACGAGAATCCAAACGCCTGTGTTGTGATGTGAGAAGGTGAGAACAATGAGGTCCAAA TTGGGGGAAATAAGAGNGAGACTAC GC ]
[+] EMBL C28754 [ ATGACAAGAAGGCGGCCGAA GTGGCGAGGAGAAGGACGAGAGCAAGGAGGAAAAGAAGGAAGGTGATGATGAGAAAGAAAAGGAGAAAGAGAAGGATGATAGCAATGCTGCCGAGGTTGAAGAGAAGGACAAAGAGAAAGATCCTTCAGCCTTGGCTGCTGCTAATCTGTATATGCATTACCCAAGATTCAGCAACCCTGGTGGATATGGTGTTCCTGGCTACGCATACCCGTATGCGCCGCAGCTCTTCAGTNACGAGAATCCAAACGCCTGTTTTGTGATGTNAGAAGGTGAGANCAATGAGGTCCAAATTTGGGGGAAATAAGAGTTAG CTACNGCATCCCCTNACTTCTTGGGGGTGAAATCGGC ]
[+] EMBL AU093075 [ anGAGAAGGACAAAGAGAAAGNTCCTTCAGCCTTGGCTGCTGCTAATCTGTATATGCATTACCCAAGATTCAGCAACCCTGGTGGATATGGTGTTCCT GNTACGCATACCCGTATGCGCCGCAGCTCTTCAGTGACGAGAATCCAAACGCCTGTGTTGTGATGTGAGAAGGTGAGAACAATGAGGTCCAAA TTGGGGGAAATAAGAGTGAGACTAC GCATCCCCTNACTTCTGGGGGGTGAAATCGGCTGTTCGAAGATAGGATCAAGCAAGCCATTNTGGTTTCTAACTGTTCTNATGTAATTAAAATGTGAACTGTTGGCCTCGTCTCTATTGTCGGCCTTCATGGACATTATATTATGTAAGCTAAAAATGTNGGATTTTGCTTTGAGCTTTCNCTCTATTGGCTTTCCTTTTGTAAAAATTGTATAATATATATATTGTTAGTGTTGAAAaaaa ]
consensusID : consensus_13915#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1069 fasta sequence
[CGGCGAGGGAAGAGGGCGCAGAGAGCAGGAGGAGAGGCAGGCAGCCATGGGCGAGGAGGAGAAGGCTGCTGCTGACCCAATGAAGGTGGTGCACCGTGTGCAGAAGAAGACAGGCCGCAAGGTTGAGCTTCTATCACCGATNGCA-CTCCGGTGGAGGAGAAGAAGGAAGAGGAGAAAAAGGAAGAGCCCGAGCCACCAAAACCTGAAGAGAAGGAGCCAACGGTGATAGCGGTGGTCCTGAAGGTGCATATGCATTGTGAGGCCTGTGCGCAAGTTATCAGGAAGAAAATCCTCAAGATGAAAGGAGTGCAATCAGCAGAGCCAGACATGAAGGCATCACAAGTGACGGTGAAGGGTGTGTTTGAGGAGTCAAAGCTCACCGATTACGTGCATAAACGCATTGGTAAGAATGCCGCCGTTGTAAAATCTGAACCAGCCCCTCCCCCTGAGAATGCTGGCGATGCAAATGCAAAGGATGACAAGAAGGCGGCCGAAGGTGGCGAGGAGAAGGACGAGAGCAAGGAGGAAAAGAAGGAAGGTGATGATGAGAGGGGTGATGAGAAAGAAAAGGAGAAAGAGAAGGGTGATAGCAATGCTGCCGAGGTTGAAGAGGACAAAGAGAAAGATCCTTCAGCCTTGGCTGCTGCTAATCTGTATATGCATTACCAAAGATTCAGCAACCCTGGTGGATATGGTGTTCCCGGCTACGCATACCCGTATGCGCCACAGCTTTTTAGCGACGAGAATCCGAACGCCTGTGTTGTGATGTGAGAAGGTGAGAACAATGAGATCCAAATTGGGGAAAATAAGAGTGAGACTACGCATCCCCTAACTTTTGGGGGGTGAAATTGGCTGTTCGAATATAGGATCAAGCAAGCCATTTTGGTTTCTAACTGTTCTCATGTAATTAAAATGTGAACTGTTGGCCTCGTCTCTATTGTTGGCCTTCATGGACATTATTTTATGTAAGCTAAAAATGTAGGATTTTGCTTTGTACTTTCTCTCTATTGGCTTTCCTTTTGTAAAAATTGTATAATATATATTGTTAGTGTTGAAAAAAAAAAAAAAA]
[+] EMBL C98142 [ GCGAGGGAAGAGGGCGCAGAGAGCAGGAGGAGAGGCAGGCAGCCATGGGCGAGGAGGAGAAGGCTGCTGCTGACCCAATGAAGGTGGTGCACCGTGTGCAGAAGAAGACAGGCCGCAAGGTTGAGCTTCTATCACCGATNGCA CTCCGGTGGAGGAGAAGAAGGAAGAGGAGAAAAAGGAAGAGCCCGAGCCACCAAAACCTGAAGAGAAGGAGCCAACGGTGATAGCGGTGGTCCTGAAGGTGCATATGCATTGTGAGGCCTGTGCGCAAGTTATCAGGAAGAAAATCCTCAAGATGAAAGGAGTGCAATCAGCAGAGCCAGACATGAAGGCATCACAAGTGACGGTGAAGGGTGTGTTTGAGGAGTCAAAGCTCACCGATTACGTGCATAAACGCATTGGTAAGAATGCCGCCGTTGTAAAATCTGAACCAGCCCCTCCCCCTGAGAATGCTGGCGATGCAAATGCAAAGGATGACAAGAAGGCGGCCGAAGGTGGCGAGGAGAAGGACGAGAGCAAGGAGGAAAAGAAGGAAGGTGATGATGAGA ]
[+] EMBL C98143 [cgcgGAGGGAAGAGGGCGCAGAGAGCAGGAGGAGAGGCAGGCAGCCATGGGCGAGGAGGAGAAGGCTGCTGCTGACCCAATGAAGGTGGTGCACCGTGTGCAGAAGAAGACAGGCCGCAAGGTTGAGCTTCTATCACCGATGCCACCTCCGGTGGAGGAGAAGAAGGAAGAGGAGAAAAAGGAAGAGCCCGAGCCACCAAAACCTGAAGAGAAGGAGCCAACGGTGATAGCGGTGGTCCTGAAGGTGCATATGCATTGTGAGGCCTGTGCGCAAGTTATCAGGAAGAAAATCCTCAAGATGAAAGGAGTGCAATCAGCAGAGCCAGACATGAAGGCATCACAAGTGACGGTGAAGGGTGTGTTTGAGGAGTCAAAGCTCACCGATTACGTGCATAAACGCATTGGTAAGAATGCCGNCGTTGTAAAATCTGAACCAGCCCCTCCCCCTGAGAATGCTGGCGATGCAAATGCAAAGGNTTACAAGAA ]
[-] EMBL CA761232 [ GGTAAGAANGCCGCCGTCGTAAAATCTGAACCAGCCCCTCCCCCTGAGAATGCTGGCGATGCAAATGCAAAGGATGACAAGAAGGCGGCCGAAGGTGGCGAGGAGAAGGNCGAGAGCAAGGAGGAAAAGAAGGAAGGTGATGATGCTGGGGGTGATGAGAAAGAAAAGGAGAAAGAGAAGGGTGATAGCAATGCTGCCGAGGTTGAAGAGGACAAAGAGAAAGATCCTTCAGCCTTGGCTGCTGCTAATCTGTATATGCATTACCAAAGATTCAGCAACCCTGGTGGATATGGTGTTCCCGGCTACGCATACCCGTATGCGCCACAGCTTTTTAGCGACGAGAATCCGAACGCCTGTGTTGTGATGTGAGAAGGTGAGAACAATGAGATCCAAATTGGGGAAAATAAGAGTGAGACTACGCATCCCCTAACTTTTGGGGGGTGAAATTGGCTGTTCGAATATAGGATCAAGCAAGCCATTTTGGTTTCTAACTGTTCTCATGTAATTAAAATGTGAACTGTTGGCCTCGTCTCTATTGTTGGCCTTCATGGACATTATTTTATGTAAGCTAAAAATGTAGGATTTTGCTTTGTACTTTCTCTCTATTGGCTTTCCTTTTGTAAAAATTGTATAATATATATTGTTAGTGTTGAAAAAAAAAAAAAAA]
consensusID : consensus_13915#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 583 fasta sequence
[AGCGCGAGGGAAGAGGGCGCAGAGAGCAGGAGGAGAGGCAGGCAGCCATGGGCGAGGAGAAGAAGGAAGAGGAAAAGAAGGAAGGTGATGATGAGAAAGAAAAGGAGAAAGAGAAGGATGATAGCAATGCTGCCGAGGTTGAAGAGAAGGACAAAGAGAAAGATCCTTCAGCCTTGGCTGCTGCTAATCTGTATATGCATTACCCAAGATTCAGCAACCCTGGTGGATATGGTGTTCCTGGCTACGCATACCCGTATGCGCCGCAGCTCTTCAGTGACGAGAATCCAAACGCCTGTGTTGTGATGTGAGAAGGTGAGAACAATGAGGTCCAAATTGGGGGAAATAAGAGTGAGACTACGCATCCCCTAACTTCTGGGGGGTGAAATCGGCTGTTCGAAGATAGGATCAAGCAAGCCATTTTGGTTTCTAACTGTTCTCATGTAATTAAAATGTGAACTGTTGGCCTCGTCTCTATTGTCGGCCTTCATGGACATTATATTATGTAAGCTAAAAATGTAGGATTTTGCTTTGAGCTTTCTCTCTATTGGCTTTCCTTTTGTAAAAATTGTATAATATATATATT]
[+] EMBL AK120359 [AGCGCGAGGGAAGAGGGCGCAGAGAGCAGGAGGAGAGGCAGGCAGCCATGGGCGAGGAGAAGAAGGAAGAGGAAAAGAAGGAAGGTGATGATGAGAAAGAAAAGGAGAAAGAGAAGGATGATAGCAATGCTGCCGAGGTTGAAGAGAAGGACAAAGAGAAAGATCCTTCAGCCTTGGCTGCTGCTAATCTGTATATGCATTACCCAAGATTCAGCAACCCTGGTGGATATGGTGTTCCTGGCTACGCATACCCGTATGCGCCGCAGCTCTTCAGTGACGAGAATCCAAACGCCTGTGTTGTGATGTGAGAAGGTGAGAACAATGAGGTCCAAATTGGGGGAAATAAGAGTGAGACTACGCATCCCCTAACTTCTGGGGGGTGAAATCGGCTGTTCGAAGATAGGATCAAGCAAGCCATTTTGGTTTCTAACTGTTCTCATGTAATTAAAATGTGAACTGTTGGCCTCGTCTCTATTGTCGGCCTTCATGGACATTATATTATGTAAGCTAAAAATGTAGGATTTTGCTTTGAGCTTTCTCTCTATTGGCTTTCCTTTTGTAAAAATTGTATAATATATATATT]
consensusID : consensus_13915#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 373 fasta sequence
[AGCAGGAGGAGAGGCAGGCAGCCATGGGCGAGGAGGAGAAGGTGAAGGAGGAGGCGGCGGCGGAGAAGGGGAAGGAGGCGGCGGTANGGAGGAGAAGGATNNGGCGGCGGCAGGGGAGGAGAAGAAGGAGGACGCGCCGCCGCCGCCACCGCCGGAGGAGGTGTGATGCGGGTNTTCATGCACTGCGAAGGGTGCGCTCGCAAGGTCAAGAAGATACTCAGGGGATTTAATGGAGTGGAAGATGTTGTCGCGGACTCGAAAGCTCACAAGGTGATCNTAAAGGGAAAGAAGGCTNCTNCTTGACCCAATGAAGGTGGTNCACCGTNTCAGAAGAAGACAGGCCCAAGTTTNACTTTTNTTACCGATTCCACCT]
[+] EMBL AU068697 [AGCAGGAGGAGAGGCAGGCAGCCATGGGCGAGGAGGAGAAGGTGAAGGAGGAGGCGGCGGCGGAGAAGGGGAAGGAGGCGGCGGTANGGAGGAGAAGGATNNGGCGGCGGCAGGGGAGGAGAAGAAGGAGGACGCGCCGCCGCCGCCACCGCCGGAGGAGGTGTGATGCGGGTNTTCATGCACTGCGAAGGGTGCGCTCGCAAGGTCAAGAAGATACTCAGGGGATTTAATGGAGTGGAAGATGTTGTCGCGGACTCGAAAGCTCACAAGGTGATCNTAAAGGGAAAGAAGGCTNCTNCTTGACCCAATGAAGGTGGTNCACCGTNTCAGAAGAAGACAGGCCCAAGTTTNACTTTTNTTACCGATTCCACCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13915#0 ------------------------------------------------------------
consensus_13915#3 ------------------------------------------------------------
consensus_13915#1 CGGCGAGGGAAGAGGGCGCAGAGAGCAGGAGGAGAGGCAGGCAGCCATGGGCGAGGAGGA 60
consensus_13915#2 ------------------------------------------------------------
consensus_13915#0 ------------------------------------------------------------
consensus_13915#3 ------------------------------------------------------------
consensus_13915#1 GAAGGCTGCTGCTGACCCAATGAAGGTGGTGCACCGTGTGCAGAAGAAGACAGGCCGCAA 120
consensus_13915#2 ------------------------------------------------------------
consensus_13915#0 ------------------------------------------------------------
consensus_13915#3 ------------------------------------------------------------
consensus_13915#1 GGTTGAGCTTCTATCACCGATNGCACTCCGGTGGAGGAGAAGAAGGAAGAGGAGAAAAAG 180
consensus_13915#2 ------------------------------------------------------------
consensus_13915#0 ------------------------------------------------------------
consensus_13915#3 ------------------------------------------------------------
consensus_13915#1 GAAGAGCCCGAGCCACCAAAACCTGAAGAGAAGGAGCCAACGGTGATAGCGGTGGTCCTG 240
consensus_13915#2 ------------------------------------------------------------
consensus_13915#0 ------------------------------------------------------------
consensus_13915#3 ------------------------------------------------------------
consensus_13915#1 AAGGTGCATATGCATTGTGAGGCCTGTGCGCAAGTTATCAGGAAGAAAATCCTCAAGATG 300
consensus_13915#2 ------------------------------------------------------------
consensus_13915#0 ------------------------------------------------------------
consensus_13915#3 ------------------------------------------------------------
consensus_13915#1 AAAGGAGTGCAATCAGCAGAGCCAGACATGAAGGCATCACAAGTGACGGTGAAGGGTGTG 360
consensus_13915#2 ------------------------------------------------------------
consensus_13915#0 ---------AGTGAGCCACCACCAGAGGCGTGACCGAATCGGCTAGCGAGTGAGAGAGGA 51
consensus_13915#3 ------------------------------------------------------------
consensus_13915#1 TTTGAGGAGTCAAAGCTCACCGATTACGTGCATAAACGCATTGGTAAGAATGCCGCCGTT 420
consensus_13915#2 ------------------------------------------------------------
consensus_13915#0 GGAGCAGTTCACAGTTGCAGTTCCACGCTCGCAGTAGTGTCCAGAGCAGAGCGCGAGGGA 111
consensus_13915#3 ------------------------------------------------------------
consensus_13915#1 GTAAAATCTGAACCAGCCCCTCCCCCTGAGAATGCTGGCGATGCAAATGCAAAGGATGAC 480
consensus_13915#2 ---------------------------------------------AGCGCGAGGGAAGAG 15
consensus_13915#0 AGAGGGCGCAGAGAGCAGGAG--GAGAGGCAGCCATGGGCGAGGAGGAGAAGGTGAAGGA 169
consensus_13915#3 ---------AGCAGGAGGAGA--GGCAGGCAGCCATGGGCGAGGAGGAGAAGGTGAAGGA 49
consensus_13915#1 AA-GAAGGCGGCCGAAGGTGGCGAGGAGAAGGACGAGAGCAAGGAGGAAAAGAAGGAAGG 539
consensus_13915#2 GGCGCAGAGAGCAGGAGGAGA--GGCAGGCAGCCATGGGCGAGGAGAAGAAGGAAGAGGA 73
* * ** * * * ** ***** * *** * *
consensus_13915#0 GGAGGCGGCGGCGGAGAAGGGGAAGGAGGCGGCGGTAGCGGAGGAGAAGGAGGCGGCGGC 229
consensus_13915#3 GGAGGCGGCGGCGGAGAAGGGGAAGGAGGCGGCGGTAN-GGAGGAGAAGGATNNGGCGGC 108
consensus_13915#1 TGATGATGAGAGGGGTGATGAGAAAGAAAAGGAGAAAGAGAAGGGTGATAGCAATGCTGC 599
consensus_13915#2 AAAGAAGGAAGGTGATGATGAGAAAGAAAAGGAGAAAGAGAAGGATGATAGCAATGCTGC 133
* * * * * *** ** ** * * * *** * ** **
consensus_13915#0 GGCAGGGGAGGAG---AAGAAGGAGAACGCGCCGCC-NCCNCCGCCACCGCCGGAGGAGG 285
consensus_13915#3 GGCAGGGGAGGAG---AAGAAGGAGGACGCGCCGCC-GCCGCC---ACCGCCGGAGGAGG 161
consensus_13915#1 CGAGGTTGAAGAG---GACAAAGAGAAAGATCCTTCAGCCTTGGCTGCTGCTAATCTGTA 656
consensus_13915#2 CGAGGTTGAAGAGAAGGACAAAGAGAAAGATCCTTCAGCCTTGGCTGCTGCTAATCTGTA 193
* * ** *** * ** *** * * ** * ** * **
consensus_13915#0 TGGTGATG--CGGGTCTTCATGCACTGCGAAGGGTGCGCT-CGCAAGGTCAAGAAGATAC 342
consensus_13915#3 TG-TGATG--CGGGTNTTCATGCACTGCGAAGGGTGCGCT-CGCAAGGTCAAGAAGATAC 217
consensus_13915#1 TATGCATTACCAAAGATTCAGCAACCCTGGTGGATATGGTGTTCCCGGCTACGCATACCC 716
consensus_13915#2 TATGCATTACCCAAGATTCAGCAACCCTGGTGGATATGGTGTTCCTGGCTACGCATACCC 253
* ** * **** ** * ** * * * * ** * * * * *
consensus_13915#0 TCAGGGGA--------TTTGATGGAGTGGA---AGATGT---TGTCGCGGACTCGAAAGC 388
consensus_13915#3 TCAGGGGA--------TTTAATGGAGTGGA---AGATGT---TGTCGCGGACTCGAAAGC 263
consensus_13915#1 GTATGCGCCACAGCTTTTTAGCGACGAGAATCCGAACGCCTGTGTTGTGATGTGAGAAGG 776
consensus_13915#2 GTATGCGCCGCAGCTCTTCAGTGACGAGAATCCAAACGCCTGTGTTGTGATGTGAGAAGG 313
* * * ** * * * * * * *** * * * ***
consensus_13915#0 TCA---CAAGGTGATCGTGA---AGGGAAAGAAGGCTG---CTGCT-GACCC-------- 430
consensus_13915#3 TCA---CAAGGTGATCNTAA---AGGGAAAGAAGGCTN---CTNCTTGACCC-------- 306
consensus_13915#1 TGAGAACAATGAGATCCAAATTGGGGAAAATAAGAGTGAGACTACGCATCCCCTAACTTT 836
consensus_13915#2 TGAGAACAATGAGGTCCAAATTGGGGGAAATAAGAGTGAGACTACGCATCCCCTAACTTC 373
* * *** * * ** * ** *** *** * ** * ***
consensus_13915#0 -----AATGAAGGTGGTGCACCGTGTGCAGAAGAAGACAGGCCG---CAAGGTTGAGCTT 482
consensus_13915#3 -----AATGAAGGTGGTNCACCGTNT-CAGAAGAAGACAGGCC----CAAGTTTNA-CTT 355
consensus_13915#1 TGGGGGGTGAAATTGGCTGTTCGAATATAGGATCAAGCAAGCCATTTTGGTTTCTAACTG 896
consensus_13915#2 TGGGGGGTGAAATCGGCTGTTCGAAGATAGGATCAAGCAAGCCATTTTGGTTTCTAACTG 433
**** ** ** ** * * ** *** * * **
consensus_13915#0 CTATCACCGATGCCACCTCCGGTGGAGGAGAAGAAGGAAGAGGAGAAAAAGGAAGAGCCC 542
consensus_13915#3 TTNTTACCGATTCCACCT------------------------------------------ 373
consensus_13915#1 TTCTCATGTAATTAAAATGTGAACTGTTGGCCTCGTCTCTATTGTTGGCCTTCATGGACA 956
consensus_13915#2 TTCTCATGTAATTAAAATGTGAACTGTTGGCCTCGTCTCTATTGTCGGCCTTCATGGACA 493
* * * * * *
consensus_13915#0 GAGCCACCAAAACCTGAAGAGAAGGAGCCAACGGTGATAGCGGTGGTCCTGAAGGTGCAT 602
consensus_13915#3 ------------------------------------------------------------
consensus_13915#1 TTATTTTATGTAAGCTAAAAATGTAGGATTTTGCTTTGTACTTTCTCTCTATTGGCTTTC 1016
consensus_13915#2 TTATATTATGTAAGCTAAAAATGTAGGATTTTGCTTTGAGCTTTCTCTCTATTGGCTTTC 553
consensus_13915#0 ATGCATTGTGAGGCCTGTGCGCAAGTTATCAGGAAGAAAATCCTCAAGATGAAAGGAGTG 662
consensus_13915#3 ------------------------------------------------------------
consensus_13915#1 CTTTTGTAAAAATTGTATAATATATATTGTTAGTGTTGAAAAAAAAAAAAAAA------- 1069
consensus_13915#2 CTTTTGTAAAAATTGTATAATATATATATT------------------------------ 583
consensus_13915#0 CAATCAGCAGAGCCAGACATGAAGGCATCACAAGTGACGGTGAAGGGTGTGTTTGAGGAG 722
consensus_13915#3 ------------------------------------------------------------
consensus_13915#1 ------------------------------------------------------------
consensus_13915#2 ------------------------------------------------------------
consensus_13915#0 TCAAAGCTCACCGATTACGTGCATAAACGCATTGGTAAGAATGCCGCCGTTGTAAAATCT 782
consensus_13915#3 ------------------------------------------------------------
consensus_13915#1 ------------------------------------------------------------
consensus_13915#2 ------------------------------------------------------------
consensus_13915#0 GAACCAGCCCCTCCCCCTGAGAATGCTGGCGATGCAAATGCAAAGGATGACAAGAAGGCG 842
consensus_13915#3 ------------------------------------------------------------
consensus_13915#1 ------------------------------------------------------------
consensus_13915#2 ------------------------------------------------------------
consensus_13915#0 GCCGAAGGTGGCGAGGAGAAGGACGAGAGCAAGGAGGAAAAGAAGGAAGGTGATGATGAG 902
consensus_13915#3 ------------------------------------------------------------
consensus_13915#1 ------------------------------------------------------------
consensus_13915#2 ------------------------------------------------------------
consensus_13915#0 AAAGAAAAGGAGAAAGAGAAGGATGATAGCAATGCTGCCGAGGTTGAAGAGAAGGACAAA 962
consensus_13915#3 ------------------------------------------------------------
consensus_13915#1 ------------------------------------------------------------
consensus_13915#2 ------------------------------------------------------------
consensus_13915#0 GAGAAAGATCCTTCAGCCTTGGCTGCTGCTAATCTGTATATGCATTACCCAAGATTCAGC 1022
consensus_13915#3 ------------------------------------------------------------
consensus_13915#1 ------------------------------------------------------------
consensus_13915#2 ------------------------------------------------------------
consensus_13915#0 AACCCTGGTGGATATGGTGTTCCTGGCTACGCATACCCGTATGCGCCGCAGCTCTTCAGT 1082
consensus_13915#3 ------------------------------------------------------------
consensus_13915#1 ------------------------------------------------------------
consensus_13915#2 ------------------------------------------------------------
consensus_13915#0 GACGAGAATCCAAACGCCTGTGTTGTGATGTGAGAAGGTGAGAACAATGAGGTCCAAATT 1142
consensus_13915#3 ------------------------------------------------------------
consensus_13915#1 ------------------------------------------------------------
consensus_13915#2 ------------------------------------------------------------
consensus_13915#0 GGGGGAAATAAGAGTGAGACTACGCATCCCCTAACTTCTGGGGGGTGAAATCGGCTGTTC 1202
consensus_13915#3 ------------------------------------------------------------
consensus_13915#1 ------------------------------------------------------------
consensus_13915#2 ------------------------------------------------------------
consensus_13915#0 GAAGATAGGATCAAGCAAGCCATTTTGGTTTCTAACTGTTCTCATGTAATTAAAATGTGA 1262
consensus_13915#3 ------------------------------------------------------------
consensus_13915#1 ------------------------------------------------------------
consensus_13915#2 ------------------------------------------------------------
consensus_13915#0 ACTGTTGGCCTCGTCTCTATTGTCGGCCTTCATGGACATTATATTATGTAAGCTAAAAAT 1322
consensus_13915#3 ------------------------------------------------------------
consensus_13915#1 ------------------------------------------------------------
consensus_13915#2 ------------------------------------------------------------
consensus_13915#0 GTAGGATTTTGCTTTGAGCTTTCTCTCTATTGGCTTTCCTTTTGTAAAAATTGTATAATA 1382
consensus_13915#3 ------------------------------------------------------------
consensus_13915#1 ------------------------------------------------------------
consensus_13915#2 ------------------------------------------------------------
consensus_13915#0 TATATATTGTTAGTGTTGAAATAGCTTGTGTATCCTTGTTATTGTCTCAGGAGGAGCACC 1442
consensus_13915#3 ------------------------------------------------------------
consensus_13915#1 ------------------------------------------------------------
consensus_13915#2 ------------------------------------------------------------
consensus_13915#0 CTCTAGT 1449
consensus_13915#3 -------
consensus_13915#1 -------
consensus_13915#2 -------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||