These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13917#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1400 fasta sequence [ACGTGCACTTTGGGTTGCTCATGCACTGGCTTAATTTCTGAAGATGAGTAATCTGCTCAAGGCTAAGAGCTGGGTACCAGAGGAGAAAGCTGCAGCGACTGCTTCTGATGAACAGAATGACAAGATAAAGAAAGTCCGGGAACTCCTGGGAAGCCAGATGACAGCAGAGATGCCGTCATTCTTGTCGGACGCCACCATCCGCCGCTTCCTCCGGGCAAGGAACTGGAGCACGGAGCAAGCAACCAAGGCTCTCAAAGAGACTGTCAAATGGAGGCGTCAGTACAGGCCGGACACAATCCGCTGGGAAGACATTCCTGGAAGGGAGCACGAAGCTAGGAGAACATATATAGCCGACTACTTTGATAAGAATGGAAGGATCGTCTTCATATCGAATCCGACAATTAAGGTTCATTAACTGATCATGCATTTAATGACCGGCAGAGTACCCTGTTAACTATTTTTTTTATTAGTCTAACAGAGTACTCATCCATCCCATAATATAAGAGATTTTGGGTGGATATGAGATATGTCCAGATTCATTGTATTAGGATGTGTCACATCCAATCAAAATCTCTTATATTATGGGACGGTGGGAGAAACTTTGAGTCTTCAACTAATTTTCTAAATTATTTATATATTCGAATTTACCACCAATATATGTTGTTTCACTTGTCTGACAACAGAGTAAATCATCCACCAAGGACCAGATAAAACAGTTAGTGTATAACCTGGAGATTTTTGCCATGCACTCAGAAAACATGGAAGACGAATGTACTGTTTGGTTAACTGACTTTCAAGGCTGGGT-GCTAACAAATACGCCATTGCCGTTGCTTCGTGAATGCACTCACATAATTCAAAACCATTATCCAGGGCTGATTTCTGTCGCAATCCTCAGCAACCCACCAAGGATTTTCGAATCCTTTTGGAAGATTGTGTGCTATTTCATTGAGCCAAAGTTGAAAGAAAAAGTGAAGTTCGTATATACTAACAATCCAGAGAGCCACAAGATAGTTGCTGATATGTTTGATTTGGACAAGCTGGAGTCTGCATTTGGGGGGAGGAACACACTTCCATTTGACATGGACAAGTATGCAGAGAGAATGAAACGAAGTGACCAAATGAGAGGAGCTCCCATGCATGCCAATGGCTACTCTTGCTCTACCCAAACCTGACCACATAAAAGTTCACCTTAATTTCTTTTAGTTTCATATAAAGTGGCATAAATATATATACGCCGGTTAGATCTGAATAAGTGATGCATGTCACTCTTAGGTAGGATTTTGAGGCGGGCGGACCTGAGTAAAACTCCATGACAAATTATGTACAAGGAAGAAGCTAATCATGTAATAACCCAAATTTCAGTTGCGTTAATTATAGTGGTAAAAAAAAAAAAAAAAAAA] [+] EMBL CB664737 [ACGTGCACTTTGGGTTGCTCATGCACTGGCTTAATTTCTGAAGATGAGTAATCTGCTCAAGGCTAAGAGCTGGGTACCAGAGGAGAAAGCTGCAGCGACTGCTTCTGATGAACAGAATGACAAGATAAAGAAAGTCCGGGAACTCCTGGGAAGCCAGATGACAGCAGAGATGCCGTCATTCTTGTCGGACGCCACCATCCGCCGCTTCCTCCGGGCAAGGAACTGGAGCACGGAGCAAGCAACCAAGGCTCTCAAAGAGACTGTCAAATGGAGGCGTCAGTACAGGCCGGACACAATCCGCTGGGAAGACATTCCTGGAAGGGAGCACGAAGCTAGGAGAACATATATAGCCGACTACTTTGATAAGAATGGAAGGATCGTCTTCATATCGAATCCGACAATTAAGGTTCATTAACTGATCATGCATTTAATGACCGGCAGAGTACCCTGTTAACTATTTTTTTTATTAGTCTAACAGAGTACTCATCCATCCCATAATATAAGAGATTTTGGGTGGATATGAGATATGTCCAGATTCATTGTATTAGGATGTGTCACATCCAATCAAAATCTCTTATATTATGGGACGGTGGGAGAAACTTTGAGTCTTCAACTAATTTTCTAAATTATTTATATATTCGAATTTACCACCAATATATGTTGTTTCACTTGTCTGACAACAGAGTAAATCATCCACCAAGGACCAGATAAAACAGTTAGTGTATAACCTGGAGATTTTTGCCATGCACTCAGAAAACATGGAAGACGAATGTACTGTTTGGTTAACTGACTTTCAAGGCTGGGTGGCT ACAAATACGCCATTGCCGTTGCTTCGTGAATGCACTCACATAAT ] [+] EMBL CB664699 [ACGTGCACTTTGGGTTGCTCATGCACTGGCTTAATTTCTGAAGATGAGTAATCTGCTCAAGGCTAAGAGCTGGGTACCAGAGGAGAAAGCTGCAGCGACTGCTTCTGATGAACAGAATGACAAGATAAAGAAAGTCCGGGAACTCCTGGGAAGCCAGATGACAGCAGAGATGCCGTCATTCTTGTCGGACGCCACCATCCGCCGCTTCCTCCGGGCAAGGAACTGGAGCACGGAGCAAGCAACCAAGGCTCTCAAAGAGACTGTCAAATGGAGGCGTCAGTACAGGCCGGACACAATCCGCTGGGAAGACATTCCTGGAAGGGAGCACGAAGCTAGGAGAACATATATAGCCGACTACTTTGATAAGAATGGAAGGATCGTCTTCATATCGAATCCGACAATTAAGGTTCATTAACTGATCATGCATTTAATGACCGGCAGAGTACCCTGTTAACTATTTTTTTTATTAGTCTAACAGAGTACTCATCCATCCCATAATATAAGAGATTTTGGGTGGATATGAGATATGTCCAGATTCATTGTATTAGGATGTGTCACATCCAATCAAAATCTCTTATATTATGGGACGGTGGGAGAAACTTTGAGTCTTCAACTAATTTTCTAAATTATTTATATATTCGAATTTACCACCAATATATGTTGTTTCACTTGTCTGACAACAGAGTAAATCATCCACCAAGGACCAGATAAAACAGTTAGTGTATAACCTGGAGATTTTTGCCATGCACTCAGAAAACATGGAAGACGAATGTACTGTTTGGTTAACTGACTTTCAAGGCTGGGT GCTAAC AATACGCCAT ] [-] EMBL CB664738 [ TATTAGGATGTGTCACATCCAATCAAAATCTCTTATATTATGGGACGGTGGGAGAAACTTTGAGTCTTCAACTAATTTTCTAAATTATTTATATATTCGAATTTACCACCAATATATGTTGTTTCACTTGTCTGACAACAGAGTAAATCATCCACCAAGGACCAGATAAAACAGTTAGTGTATAACCTGGAGATTTTTGCCATGCACTCAGAAAACATGGAAGACGAATGTACTGTTTGGTTAACTGACTTTCAAGGCTGGGT GCTAACAAATACGCCATTGCCGTTGCTTCGTGAATGCACTCACATAATTCAAAACCATTATCCAGGGCTGATTTCTGTCGCAATCCTCAGCAACCCACCAAGGATTTTCGAATCCTTTTGGAAGATTGTGTGCTATTTCATTGAGCCAAAGTTGAAAGAAAAAGTGAAGTTCGTATATACTAACAATCCAGAGAGCCACAAGATAGTTGCTGATATGTTTGATTTGGACAAGCTGGAGTCTGCATTTGGGGGGAGGAACACACTTCCATTTGACATGGACAAGTATGCAGAGAGAATGAAACGAAGTGACCAAATGAGAGGAGCTCCCATGCATGCCAATGGCTACTCTTGCTCTACCCAAACCTGACCACATAAAAGTTCACCTTAATTTCTTTTAGTTTCATATAAAGTGGCATAAATATATATACGCCGGTTAGATCTGAATAAGTGATGCATGTCACTCTTAGGTAGGATTTTGAGGCGGGCGGACCTGAGTAAAACTCCATGACAAATTATGTACAAGGAAGAAGCTAATCATGTAATAACCCAAATTTCAGTTGCG ] [-] EMBL CB664700 [ TTCACTTGTCTGACAACAGAGTAAATCATCCACCAAGGACCAGATAAAACAGTTAGTGTATAACCTGGAGATTTTTGCCATGCACTCAGAAAACATGGAAGACGAATGTACTGTTTGGTTAACTGACTTTCAAGGCTGGGT GCTAACAAATACGCCATTGCCGTTGCTTCGTGAATGCACTCACATAATTCAAAACCATTATCCAGGGCTGATTTCTGTCGCAATCCTCAGCAACCCACCAAGGATTTTCGAATCCTTTTGGAAGATTGTGTGCTATTTCATTGAGCCAAAGTTGAAAGAAAAAGTGAAGTTCGTATATACTAACAATCCAGAGAGCCACAAGATAGTTGCTGATATGTTTGATTTGGACAAGCTGGAGTCTGCATTTGGGGGGAGGAACACACTTCCATTTGACATGGACAAGTATGCAGAGAGAATGAAACGAAGTGACCAAATGAGAGGAGCTCCCATGCATGCCAATGGCTACTCTTGCTCTACCCAAACCTGACCACATAAAAGTTCACCTTAATTTCTTTTAGTTTCATATAAAGTGGCATAAATATATATACGCCGGTTAGATCTGAATAAGTGATGCAGGTCACTCTTAGGTAGGATTTTGAGGCGGGCGGACCTGAGTAAAACTCCATGACAAATTATGTACAAGGAAAAAGCTAATCATGTAATAACCCAA ] [-] EMBL CA763437 [ ATAAAACAGTTAGGGTATAACCTGGAGATTTTTGCCATGCACTCAGAAAACATGGAAGCCGAATGTCCTGTTTGGTTAACTGGCTTTCAAGGCTGGGT GCTAACAAATACGCCATCGCCGTTGCTTCGTGAATGCACTCCCATAATTCAAAACCATTATCCAGGGCTGATTTCTGTCGCAATCCTCAGCAACCCACCAAGGATTTTCGAATCCTTTTGGAAGATTGTGTGCTATTTCATTGAGCCAAAGTTGAAAGAAAAAGTGAAGTTTGTATATACTAACAATCCAGAGAGCCCCAAGATAGTTGCTGATATGTTTGATTTGGACAAGCTGGAGTTTGCATTTGGGGGGAGGAACACACTTCCATTTGACATGGACAAGTATGCAGAGAGAATGAAACGAAGTGCCCAAATGAGAGGAGCTCCCATGCATGCCAATGGCTACTCTTGCTCTACCCAAACCTGACCACATAAAAGTTCACCTTAATTTCTTTTAGTTTCATATAAAGTGGCATAAATATATATACGCCGGTTAGATCTGAATAAGTGATGCATGTCACTTTTAGGTAGGATTTTGAGGCGGGCGGACCTGAGTAAAACTCCATGACAAATTATGTCCAAGGAAGAAGCTAATCATGTAATAACCCAAATTTCAGTTGCGTTAATTATAGTGGTAAAAAAAAAAAAAAAAAAA] consensusID : consensus_13917#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1217 fasta sequence [TGATCTCTCTATATATTTTATGGATTACCTCTCTGTTTTTAAGGGAAGAGCTAGCGATCGAGCTCCAGTAGTATACGTGCACTTTGGGTTGCTCATGCACTGGCTTAATTTCTGAAGATGAGTAATCTGCTCAAGGCTAAGAGCTGGGTACCAGAGGAGAAAGCTGCAGCGACTGCTTCTGATGAACAGAATGACAAGATAAAGAAAGTCCGGGAACTCCTGGGAAGCCAGATGACAGCAGAGATGCCGTCATTCTTGTCGGACGCCACCATCCGCCGCTTCCTCCGGGCAAGGAAC-TGGAGCACGGAGCAAGCAACCAAGGCTCTCAAAGAGACTGTCAAATGGAGGCGTCAGTACAGGCCGGACACAATCCGCTGGGAAGACATTCCTGGAAGGGAGCACGAAGC-TAGGAGAACATATATAGCCGACTACTTTGATAAGAATGGAAGGATCGTCTTCATATCGAATCCGACAATTAAGAGTAAATCATCCACCAAGGACCAGATAAAACAGTTAGTGTATAACCTGGAGATTTTTGCCNTGCACTCAGAAAACATGGAAGACGAATGTACTGTTTGGTTAACTGACTTTCAAGGCTGGGTGCTAACAAATACGCCATTGCCGTTGCTTCGTGAATGCACTCACATAATTCAAAACCATTATCCAGGGCTGATTTCTGTCGCAATCCTCAGCAACCCACCAAGGATTTTCGAATCCTTTTGGAAGATTGTGTGCTATTTCATTGAGCCAAAGTTGAAAGAAAAAGTGAAGTTCGTATATACTAACAATCCAGAGAGCCACAAGATAGTTGCTGATATGTTTGATTTGGACAAGCTGGAGTCTGCATTTGGGGGGAGGAACACACTTCCATTTGACATGGACAAGTATGCAGAGAGAATGAAACGAAGTGACCAAATGAGAGGAGCTCCCATGCATGCCAATGGCTACTCTTGCTCTACCCAAACCTGACCACATAAAAGTTCACCTTAATTTCTTTTAGTTTCATATAAAGTGGCATAAATATATATACGCCGGTTAGATCTGAATAAGTGATGCATGTCACTCTTAGGTAGGATTTTGAGGCGGGCGGACCTGAGTAAAACTCCATGACAAATTATGTACAAGGAAGAAGCTAATCATGTAATAACCCAAATTTCAGTTGCGTTAATTATAGTGGTAAACACGCGCACCAGTCTTTAAACAGCAAAAAAAAAAAA] [+] EMBL AK061207 [TGATCTCTCTATATATTTTATGGATTACCTCTCTGTTTTTAAGGGAAGAGCTAGCGATCGAGCTCCAGTAGTATACGTGCACTTTGGGTTGCTCATGCACTGGCTTAATTTCTGAAGATGAGTAATCTGCTCAAGGCTAAGAGCTGGGTACCAGAGGAGAAAGCTGCAGCGACTGCTTCTGATGAACAGAATGACAAGATAAAGAAAGTCCGGGAACTCCTGGGAAGCCAGATGACAGCAGAGATGCCGTCATTCTTGTCGGACGCCACCATCCGCCGCTTCCTCCGGGCAAGGAAC TGGAGCACGGAGCAAGCAACCAAGGCTCTCAAAGAGACTGTCAAATGGAGGCGTCAGTACAGGCCGGACACAATCCGCTGGGAAGACATTCCTGGAAGGGAGCACGAAGC TAGGAGAACATATATAGCCGACTACTTTGATAAGAATGGAAGGATCGTCTTCATATCGAATCCGACAATTAAGAGTAAATCATCCACCAAGGACCAGATAAAACAGTTAGTGTATAACCTGGAGATTTTTGCCATGCACTCAGAAAACATGGAAGACGAATGTACTGTTTGGTTAACTGACTTTCAAGGCTGGGTGCTAACAAATACGCCATTGCCGTTGCTTCGTGAATGCACTCACATAATTCAAAACCATTATCCAGGGCTGATTTCTGTCGCAATCCTCAGCAACCCACCAAGGATTTTCGAATCCTTTTGGAAGATTGTGTGCTATTTCATTGAGCCAAAGTTGAAAGAAAAAGTGAAGTTCGTATATACTAACAATCCAGAGAGCCACAAGATAGTTGCTGATATGTTTGATTTGGACAAGCTGGAGTCTGCATTTGGGGGGAGGAACACACTTCCATTTGACATGGACAAGTATGCAGAGAGAATGAAACGAAGTGACCAAATGAGAGGAGCTCCCATGCATGCCAATGGCTACTCTTGCTCTACCCAAACCTGACCACATAAAAGTTCACCTTAATTTCTTTTAGTTTCATATAAAGTGGCATAAATATATATACGCCGGTTAGATCTGAATAAGTGATGCATGTCACTCTTAGGTAGGATTTTGAGGCGGGCGGACCTGAGTAAAACTCCATGACAAATTATGTACAAGGAAGAAGCTA ] [+] EMBL CA763517 [ ACCTCTCTGTTTTTAAGGGAAGAGCTAGCGATCGAGCTCCAGTAGTATACGTGCACTTTGGGTTGCTCATGCACTGGCTTAATTTCTGAAGATGAGTAATCTGCTCAAGGCTAAGAGCTGGGTACCAGAGGAGAAAGCTGCAGCGACTGCTTCTGATGAACAGAATGACAAGATAAAGAAAGTCCGGGAACTCCTGGGAAGCCAGATGACAGCAGAGATGCCGTCATTCTTGTCGG ] [+] EMBL OSS11167A [ TCGAGCTCCAGTAGTATACGTGCACTTTGGGTTGCTCATGCACTGGCTTAATTTCTGAAGATGAGTAATCTGCTCAAGGCTAAGAGCTGGGTACCAGAGGAGAAAGCTGCAGCGACTGCTTCTGATGAACAGAATGACAAGATAAAGAAAGTCCGGGAACTCCTGGGAAGCCAGATGACAGCAGAGATGCCGTCATTCTTGTCGGACGCCACCATCCGCCGNTTCCTCCGGGCAAGGAAC TGGAGCACGGAGCAAGCAACCAAGGCTCTCAAAGAGACTGTCAAATGGAGGCGTCAGTACAGGCCGGACACAATCCGCTGGGAAGACATTCCTGGAAGGGAGCACGNAGCTTAGGAGAACATATATAGCCGACTACTTTGATAAGAATGGAAGGTCCGTCTTCATATCGAATCCGNCAATTAAGAG AAATCAT CACCAAGG CCAGAT ANACAGTTAGTGT T ANCTGG GGTTTTTG CNTG ACTCAGGAAACAT GAAG CG ATG ACTGTTg ] [+] EMBL OSS11075A [ TCGAGCTCCAGTAGTATACGTGCACTTTGGGTTGCTCATGCACTGGCTTAATTTCTGAAGATGAGTAATCTGCTCAAGGCTAAGAGCTGGGTACCAGAGGAGAAAGCTGCAGGGACTGCTTCTGATGGACAGAATGACAAGGTAAAGNAAGTCCGGGAACTTCTGGGAAGCCAGGTTACAGCNGAGNTGCCGTCATTCTTTTNGGACGGCACCATCCGGCGGTTTCTTCGGGCAAGGAACTTGNAGCACGGAGCAAGCAA ] [+] EMBL AU096416 [ GCTCCAGTAGTATACGTGCACTTTGGGTTGCTCATGCACTGGCTTAATTTCTGAAGATGAGTAATCTGCTCAAGGCTAAGAGCTGGGTACCAGAGGAGAAAGCTGCAGCGACTGCTTCTGATGAACAGAATGACAAGATAAAGAAAGTCCGGGAACTCCTGGGAAGCCAGATGACAGCAGAGATGCCGTCATTCTTGTCGGACGCCACCATCCGCCGCTTCCTCCGGGCAAGGAAC TGGAGCACGGAGCAAGCAACCAAGGCTCTCAAAGAGACTGTCAAATGGAGGCGTCAGTACAGGCCGGACACAATCCGCT ] [-] EMBL CA763438 [ CTGGAGATTTTTGCCGTGCACTCAGAAAACATGGAAGACGAATGTACTGTTTGGTTAACTGACTTTCAAGGCTGGGTGCTAACAAATACGCCATTGCCGTTGCTTCGTGAATGCACTCACATAATTCAAAACCATTATCCAGGGCTGATTTCTGTCGCAATCCTCAGCAACCCACCAAGGATTTTCGAATCCTTTTGGAAGATTGTGTGCTATTTCATTGAGCCAAAGTTGAAAGAAAAAGTGAAGTTTGTATATACTAACAATCCAGAGAGCCACAAGATAGTTGCTGATATGTTTGATTTGGACAAGCTGGAGTCTGCATTTGGGGGGAGGAACACACTTCCATTTGACATGGACAAGTATGCAGAGAGAATGAAACGAAGTGACCAAATGAGAGGAGCTCCCATGCATGCCAATGGCTACTCTTGCTCTACCCAAACCTGACCACATAAAAGTTCACCTTAATTTCCTTTAGTTTCATATAAAGTGGCATAAATATATATACGCCGGTTAGATCTGAATAAGTGATGCATGTCACTCTTAGGTAGGATTTTGAGGCGGGCGGACCTGAGTAAAACTCCATGACAAATTATGTACAAGGAAGAAGCTAATCATGTAATAACCCAAATTTCAGTTGCGTTAATTATAGTGGTAAACACGCGCACCAGTCTTTAAACAGCAAAAAAAAAAAA] consensusID : consensus_13917#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 550 fasta sequence [TTGCCCGTTGCTTCGTGAATGCACTCACTAATTCAAAACCTTATCCAGGGCTGATTTCTGTCGCAATCCTCAGCAACCCNCCAAGGATTTTCGAATCCTTTTGGAAGATTGTGTGCTATTTCCATTGAGCCAAAGTTGNAAGAAAAAGTGAAGTTCGTATATACTAACAATCCAGAGAGCCNCAAGATAGTTGCTGATATGTTTGATTTGGACAAGCTGGAGTCTGNCATTTGGGGGGAGGAACACACTTNCCATTTGACATGGACAAGTATGCAGAGAGAATGAAACGAAGTGACCAAATGAGAGGAGCTCCCATGCATGCCAATGGCTACTCTTGCTCTACCCAAACCTGACCACATAAAAGTTCACCTTAATTTCTTTTAGTTTCATATAAAGTGGCATAAATATATATACGCCGGTTAGATCTGAATAAGTGATGCATGTCACTCTTAGGTAGGATTTTGAGGCGGGCGGACCTGAGTAAAACTCCATGACAAATTATGTACAAGGAAGAAGCTAATCATGTAATAACCCAAAAAAAAAAAAAAAA] [+] EMBL AU096417 [TTGCCCGTTGCTTCGTGAATGCACTCACTAATTCAAAACCTTATCCAGGGCTGATTTCTGTCGCAATCCTCAGCAACCCNCCAAGGATTTTCGAATCCTTTTGGAAGATTGTGTGCTATTTCCATTGAGCCAAAGTTGNAAGAAAAAGTGAAGTTCGTATATACTAACAATCCAGAGAGCCNCAAGATAGTTGCTGATATGTTTGATTTGGACAAGCTGGAGTCTGNCATTTGGGGGGAGGAACACACTTNCCATTTGACATGGACAAGTATGCAGAGAGAATGAAACGAAGTGACCAAATGAGAGGAGCTCCCATGCATGCCAATGGCTACTCTTGCTCTACCCAAACCTGACCACATAAAAGTTCACCTTAATTTCTTTTAGTTTCATATAAAGTGGCATAAATATATATACGCCGGTTAGATCTGAATAAGTGATGCATGTCACTCTTAGGTAGGATTTTGAGGCGGGCGGACCTGAGTAAAACTCCATGACAAATTATGTACAAGGAAGAAGCTAATCATGTAATAACCCAAAAAAAAAAAAAAAA] consensusID : consensus_13917#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 545 fasta sequence [AAAACAAAAAAAAAAAAAAACTGGAGCACGAGGACACTGATATGGACTGAAGGAGTAGAAAAGTAGTATACGTGCACTTTGGGTTGCTCATGCACTGGCTTAATTTCTGAAGATGAGTAATCTGCTCAAGGCTAAGAGCTGGGTACCAGAGGAGAAAGCTGCAGCGACTGCTTCTGATGAACAGAATGACAAGATAAAGAAAGTCCGGGAACTCCTGGGAAGCCAGATGACAGCAGAGATGCCGTCATTCTTGTCGGACGCCACCATCCGCCGCTTCCTCCGGGCAAGGAACTGGAGCACGGAGCAAGCAACCAAGGCTCTCAAAGAGACTGTCAAATGGAGGCGTCAGTACAGGCCGGACACAATCCGCTGGGAAGACATTCCTGGAAGGGAGCACGAAGCTAGGAGAACATATATAGCCGACTACTTTGATAAGAATGGAAGGATCGTCTTCATATCGAATCCGACAATTAAGAGTAAATCATCCACCAAGGACCAGATAAGACAGTTAGTGTATAACCTGGAGATTTTTGCCATGCACTCAG] [+] EMBL CF311556 [AAAACAAAAAAAAAAAAAAACTGGAGCACGAGGACACTGATATGGACTGAAGGAGTAGAAAAGTAGTATACGTGCACTTTGGGTTGCTCATGCACTGGCTTAATTTCTGAAGATGAGTAATCTGCTCAAGGCTAAGAGCTGGGTACCAGAGGAGAAAGCTGCAGCGACTGCTTCTGATGAACAGAATGACAAGATAAAGAAAGTCCGGGAACTCCTGGGAAGCCAGATGACAGCAGAGATGCCGTCATTCTTGTCGGACGCCACCATCCGCCGCTTCCTCCGGGCAAGGAACTGGAGCACGGAGCAAGCAACCAAGGCTCTCAAAGAGACTGTCAAATGGAGGCGTCAGTACAGGCCGGACACAATCCGCTGGGAAGACATTCCTGGAAGGGAGCACGAAGCTAGGAGAACATATATAGCCGACTACTTTGATAAGAATGGAAGGATCGTCTTCATATCGAATCCGACAATTAAGAGTAAATCATCCACCAAGGACCAGATAAGACAGTTAGTGTATAACCTGGAGATTTTTGCCATGCACTCAG] consensusID : consensus_13917#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 318 fasta sequence [CAACCCCCCAAGGATTTTTGAATCCTTTTGGAAAATTGTGGGGTATTTCATTGAGCCAAAGTTGAAAAAAAAAGTGAAGTTTGTATATATTAACAATCCAAAGAGCCCCAAAATAGTTGGGGAAATGTTTTATTTGGACAAGGTGGAGTTTGCATTTGGGGGGAGGAACACACTTCCATTTTACATGGCCAAGTATGCAGAGAGAATGAAATTAAGTGCCCAAATGAGAGGGGGTCCCATGCATGCCAATGGGTATTTTTGTTTTACCCAAACCGGACCAAATAAAAGTTCCCCTTAATTTTTTTTAGTTTCAAAAAA] [-] EMBL CF311557 [CAACCCCCCAAGGATTTTTGAATCCTTTTGGAAAATTGTGGGGTATTTCATTGAGCCAAAGTTGAAAAAAAAAGTGAAGTTTGTATATATTAACAATCCAAAGAGCCCCAAAATAGTTGGGGAAATGTTTTATTTGGACAAGGTGGAGTTTGCATTTGGGGGGAGGAACACACTTCCATTTTACATGGCCAAGTATGCAGAGAGAATGAAATTAAGTGCCCAAATGAGAGGGGGTCCCATGCATGCCAATGGGTATTTTTGTTTTACCCAAACCGGACCAAATAAAAGTTCCCCTTAATTTTTTTTAGTTTCAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13917#2 ------------------------------------------------------------ consensus_13917#4 ------------------------------------------------------------ consensus_13917#0 ACGTGCACTTTGGGTTGCTCATGCACTGGCTTAATTTCTGAAGATGAGTAATCTGCTCAA 60 consensus_13917#1 ------------------------------------------------------------ consensus_13917#3 ------------------------------------------------------------ consensus_13917#2 ------------------------------------------------------------ consensus_13917#4 ------------------------------------------------------------ consensus_13917#0 GGCTAAGAGCTGGGTACCAGAGGAGAAAGCTGCAGCGACTGCTTCTGATGAACAGAATGA 120 consensus_13917#1 ------------------------------------------------------------ consensus_13917#3 ------------------------------------------------------------ consensus_13917#2 ------------------------------------------------------------ consensus_13917#4 ------------------------------------------------------------ consensus_13917#0 CAAGATAAAGAAAGTCCGGGAACTCCTGGGAAGCCAGATGACAGCAGAGATGCCGTCATT 180 consensus_13917#1 ------------------------------------------------------------ consensus_13917#3 ------------------------------------------------------------ consensus_13917#2 ------------------------------------------------------------ consensus_13917#4 ------------------------------------------------------------ consensus_13917#0 CTTGTCGGACGCCACCATCCGCCGCTTCCTCCGGGCAAGGAACTGGAGCACGGAGCAAGC 240 consensus_13917#1 -----------------------TGATCTCTCTATATATTTTATGGATTACCTCTCTGTT 37 consensus_13917#3 ------------------------------------------------------------ consensus_13917#2 ------------------------------------------------------------ consensus_13917#4 ------------------------------------------------------------ consensus_13917#0 AACCAAGGCTCTCAAAGAGACTGTCAAATGGAGGCGTCAGTACAGGCCGGACACAATCCG 300 consensus_13917#1 TTTAAGGGAAGAGCTAGCGATCGAGCTCCAGTAGTATACGTGCACTTTGGGTTGCTCATG 97 consensus_13917#3 ------------------------------------------------------------ consensus_13917#2 ------------------------------------------------------------ consensus_13917#4 ------------------------------------------------------------ consensus_13917#0 CTGGGAAGACATTCCTGGAAGGGAGCACGAAGCTAGGAGAACATATATAGCCGACTACTT 360 consensus_13917#1 CACTGGCTTAATTTCTGAAGATGAGTAATCTGCTCAAGGCTAAGAGCTGGGTACCAGAGG 157 consensus_13917#3 ------------------------------------------------------------ consensus_13917#2 ------------------------------------------------------------ consensus_13917#4 ------------------------------------------------------------ consensus_13917#0 TGATAAGAATGGAAGGATCGTCTTCATATCGAATCCGACAATTAAGGTTCATTAACTGAT 420 consensus_13917#1 AGAAAGCTGCAGCGACTGCTTCTGATGAACAGAATGACAAGATAAAGAAAGTCCGGGAAC 217 consensus_13917#3 ------------------------------------------------------------ consensus_13917#2 ------------------------------------------------------------ consensus_13917#4 ------------------------------------------------------------ consensus_13917#0 CATGCATTTAATGACCGGCAGAGTACCCTGTTAACTATTTTTTTTATTAGTCTAACAGAG 480 consensus_13917#1 TCCTGGGAAGCCAGATGACAGCAGAGATGCCGTCATTCTTGTCGGACGCCACCATCCGCC 277 consensus_13917#3 ------------------------------------------------------------ consensus_13917#2 ------------------------------------------------------------ consensus_13917#4 ------------------------------------------------------------ consensus_13917#0 TACTCATCCATCCCATAATATAAGAGATTTTGGGTGGATATGAGATATGTCCAGATTCAT 540 consensus_13917#1 GCTTCCTCCGGGCAAGGAACTGGAGCACGGAGCAAGCAACCAAGGCTCTCAAAGAGACTG 337 consensus_13917#3 ------------------------------------------------------------ consensus_13917#2 ------------------------------------------------------------ consensus_13917#4 ------------------------------------------------------------ consensus_13917#0 TGTATTAGGATGTGTCACATCCAATCAAAATCTCTTATATTATGGGACGGTGGGAGAAAC 600 consensus_13917#1 TCAAATGGAGGCGTCAGTACAGGCCGGACACAATCCGCTGGGAAGACATTCCTGGAAGGG 397 consensus_13917#3 ------------------------------------------------------------ consensus_13917#2 ------------------------------------------------------------ consensus_13917#4 ------------------------------------------------------------ consensus_13917#0 TTTGAGTCTTCAACTAATTTTCTAAATTATTTATATATTCGAATTTACCACCAATATATG 660 consensus_13917#1 AGCACGAAGCTAGGAGAACATATATAGCCGACTACTTTGATAAGAATGGAAGGATCGTCT 457 consensus_13917#3 ------------------------------------------------------------ consensus_13917#2 ------------------------------------------------------------ consensus_13917#4 ------------------------------------------------------------ consensus_13917#0 TTGTTTCACTTGTCTGACAACAGAGTAAATCATCCACCAAGGACCAGATAAAACAGTTAG 720 consensus_13917#1 TCATATCGAATCCGACAATTAAGAGTAAATCATCCACCAAGGACCAGATAAAACAGTTAG 517 consensus_13917#3 ------------------------------------------------------------ consensus_13917#2 ------------------------------------------------------------ consensus_13917#4 ------------------------------------------------------------ consensus_13917#0 TGTATAACCTGGAGATTTTTGCCATGCACTCAGAAAACATGGAAGACGAATGTACTGTTT 780 consensus_13917#1 TGTATAACCTGGAGATTTTTGCCNTGCACTCAGAAAACATGGAAGACGAATGTACTGTTT 577 consensus_13917#3 ----------------------------------------------------------AA 2 consensus_13917#2 ----------------------------------------TTGCCCGTTGCTTCGTGAAT 20 consensus_13917#4 ------------------------------------------------------------ consensus_13917#0 GGTTAACTGACTTTCAAGGCTGGGTGCTAACAAATACGCCATTGCCGTTGCTTCGTGAAT 840 consensus_13917#1 GGTTAACTGACTTTCAAGGCTGGGTGCTAACAAATACGCCATTGCCGTTGCTTCGTGAAT 637 consensus_13917#3 AACAAAAAAAAAAAAAAACTGGAGCACGAGGACACTGATATGGACTGAAGGAGTAGAAAA 62 consensus_13917#2 GCACTCAC-TAATTCAAAACC-TTATCCAGGGCTGATTTCTGTCGCAATCCTCAGCAACC 78 consensus_13917#4 -------------------------------------------------------CAACC 5 consensus_13917#0 GCACTCACATAATTCAAAACCATTATCCAGGGCTGATTTCTGTCGCAATCCTCAGCAACC 900 consensus_13917#1 GCACTCACATAATTCAAAACCATTATCCAGGGCTGATTTCTGTCGCAATCCTCAGCAACC 697 consensus_13917#3 GTAGTATACGTGCACTTTGGGTTGCTCATGCACTGGCTTAATTTCTGAAGATGAGTAATC 122 ** * consensus_13917#2 CNCCAAGGATTT----TCGAATCCTTTTGGAAGATTGTG----TGCTATTTCCATTGAGC 130 consensus_13917#4 CCCCAAGGATTT----TTGAATCCTTTTGGAAAATTGTG----GGGTATTTC-ATTGAGC 56 consensus_13917#0 CACCAAGGATTT----TCGAATCCTTTTGGAAGATTGTG----TGCTATTTC-ATTGAGC 951 consensus_13917#1 CACCAAGGATTT----TCGAATCCTTTTGGAAGATTGTG----TGCTATTTC-ATTGAGC 748 consensus_13917#3 TGCTCAAGGCTAAGAGCTGGGTACCAGAGGAGAAAGCTGCAGCGACTGCTTCTGATGAAC 182 * * * * * * * *** * ** * *** *** * consensus_13917#2 CAAAGTTGNAAGAAAAAGTGAAGTTCGTATATACTAACAATCCAGAGAGCCNCAAGATAG 190 consensus_13917#4 CAAAGTTGAAAAAAAAAGTGAAGTTTGTATATATTAACAATCCAAAGAGCCCCAAAATAG 116 consensus_13917#0 CAAAGTTGAAAGAAAAAGTGAAGTTCGTATATACTAACAATCCAGAGAGCCACAAGATAG 1011 consensus_13917#1 CAAAGTTGAAAGAAAAAGTGAAGTTCGTATATACTAACAATCCAGAGAGCCACAAGATAG 808 consensus_13917#3 -AGAATGACAAGATAAAGAAAGTCCGGGAACTCCTGGGAAGCCAGATGACAGCAGAGATG 241 * * * ** * **** * * * * * ** *** * * ** * consensus_13917#2 TTGCTGATATGTTTGATTTGGACAAGCTGGAGTCTGNCATTTGGGGGGAGGAACACACTT 250 consensus_13917#4 TTGGGGAAATGTTTTATTTGGACAAGGTGGAGTTTGC-ATTTGGGGGGAGGAACACACTT 175 consensus_13917#0 TTGCTGATATGTTTGATTTGGACAAGCTGGAGTCTGC-ATTTGGGGGGAGGAACACACTT 1070 consensus_13917#1 TTGCTGATATGTTTGATTTGGACAAGCTGGAGTCTGC-ATTTGGGGGGAGGAACACACTT 867 consensus_13917#3 CCGTCATTCTTGTCGGACGCCACCATCCGCCGCTTCC---TCCGGGCAAGGAACTGGAGC 298 * * * ** * * * * * *** ****** consensus_13917#2 NCCATTTGACATGGACAAGTATGCAGAGAGAATG--AAACGAAGTGACCAAATGAGAGGA 308 consensus_13917#4 CC-ATTTTACATGGCCAAGTATGCAGAGAGAATG--AAATTAAGTGCCCAAATGAGAGGG 232 consensus_13917#0 CC-ATTTGACATGGACAAGTATGCAGAGAGAATG--AAACGAAGTGACCAAATGAGAGGA 1127 consensus_13917#1 CC-ATTTGACATGGACAAGTATGCAGAGAGAATG--AAACGAAGTGACCAAATGAGAGGA 924 consensus_13917#3 ACGGAGCAAGCAACCAAGGCTCTCAAAGAGACTGTCAAATGGAGGCGTCAGTACAGGCCG 358 * * * * ** ***** ** *** ** ** ** consensus_13917#2 GCTCCCATGCATGCCAATGGCTACTCTTGCTCTA---CCCAAACCTGACCACATAAAAGT 365 consensus_13917#4 GGTCCCATGCATGCCAATGGGTATTTTTGTTTTA---CCCAAACCGGACCAAATAAAAGT 289 consensus_13917#0 GCTCCCATGCATGCCAATGGCTACTCTTGCTCTA---CCCAAACCTGACCACATAAAAGT 1184 consensus_13917#1 GCTCCCATGCATGCCAATGGCTACTCTTGCTCTA---CCCAAACCTGACCACATAAAAGT 981 consensus_13917#3 GACACAATCCGC-TGGGAAGACATTCCTGGAAGGGAGCACGAAGCTAGGAGAACATATAT 417 * * ** * * * * ** * * ** * * * * * consensus_13917#2 TCACCTTAATTTCTTTTAGTTTCATATAAAGTGGCATAAATATATATACGCCGGTTAGAT 425 consensus_13917#4 TCCCCTTAATTTTTTTTAGTTTCAAAAAA------------------------------- 318 consensus_13917#0 TCACCTTAATTTCTTTTAGTTTCATATAAAGTGGCATAAATATATATACGCCGGTTAGAT 1244 consensus_13917#1 TCACCTTAATTTCTTTTAGTTTCATATAAAGTGGCATAAATATATATACGCCGGTTAGAT 1041 consensus_13917#3 AGCCGACTACTTTGATAAGAATGGAAGGAT-CGTCTTCATATCGAATCCGACAATTAAGA 476 * * ** * ** * * * consensus_13917#2 CTGAATAAGTGATGCATGTCACTCTTAGGTAGG-ATTTTGAGGCGGGCGGACCTGAGTAA 484 consensus_13917#4 ------------------------------------------------------------ consensus_13917#0 CTGAATAAGTGATGCATGTCACTCTTAGGTAGG-ATTTTGAGGCGGGCGGACCTGAGTAA 1303 consensus_13917#1 CTGAATAAGTGATGCATGTCACTCTTAGGTAGG-ATTTTGAGGCGGGCGGACCTGAGTAA 1100 consensus_13917#3 GTAAATCATCCACCAAGGACCAGATAAGACAGTTAGTGTATAACCTGGAGATTTTTGCCA 536 consensus_13917#2 AACTCCATGACAAATTATGTACAAGGAAGAAGCTAATCATGTAATAACCCAAAAAAAAAA 544 consensus_13917#4 ------------------------------------------------------------ consensus_13917#0 AACTCCATGACAAATTATGTACAAGGAAGAAGCTAATCATGTAATAACCCAAATTTCAGT 1363 consensus_13917#1 AACTCCATGACAAATTATGTACAAGGAAGAAGCTAATCATGTAATAACCCAAATTTCAGT 1160 consensus_13917#3 TGCACTCAG--------------------------------------------------- 545 consensus_13917#2 AAAAAA--------------------------------------------------- 550 consensus_13917#4 --------------------------------------------------------- consensus_13917#0 TGCGTTAATTATAGTGGTAAAAAAAAAAAAAAAAAAA-------------------- 1400 consensus_13917#1 TGCGTTAATTATAGTGGTAAACACGCGCACCAGTCTTTAAACAGCAAAAAAAAAAAA 1217 consensus_13917#3 --------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||