These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13918#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 2067 fasta sequence [ATGCGCCCGGTCCACCGCGCCTCGCCTCGCTGACCCACGGGGGCCACCTGCTGCTGGTGGTGGTGGACGGACGGAGTTGTCCGCGACGGTCTCCCACTTTCCGCCTCTTCCCCACCACCATCGTTCTCCTTCTCTTCTCCCTCTCCCACCTTTCTCCCCCCGCGCGCCCGATCCTTCCCTTCCCCCAACTCCCTCTCGCATTTCCCAGCTCGGATCCTCTTCTGACTTCTCTCTCTCTCTCCGTCTGTCTCTCTCCTCTTTCGAGGTCTTCAGTCTTCAGTGTTCTTGACGACCTTGCTGCTTCTTGCCTCTGTTTCGCCTCCTACTTGCCGTCTTCTTCTTCTTCTTGCTGCTGCTGCTGCTGCTGCT-GAATTTTTCTTCGGTCAGTTAGTCGGTCAGGCCGGTGCCGGTCTGGGAGCGATTCCGCCGGACGCA-CGCATCAACAGTGGAGGGAGGGGAGGGGAGGAGCTTCCCCTTTTTGATCTAGCAAGTCGTCGTCTCCAAAAATACACTTTTTTTTGTTGGGTCTTTGGAACAAAAGGGTCTCCTCCTTTTGATCTTTCTGTCTCATCACTAAATTAGCAAAGCTTTGTGCTTCGCGGCGATCTCTTTTCAGCTAATTCAGTCTCTGTTGATAGCTTCGTTGCCCAAGAGAGATCCCCCATGTCAGAGGCGAGCGGATGACACCGCAATTCGGGTCCGGTTCTTCCGCCTGAGCTGCAGAATTTTAAGCTTCCTCCGTGGTGCCGCCATGGATGCCCTTCCTGACGCCGCCGACGCGGCGCAGTT-GGCGGCGGCGGCGGCGCCGCCGCAGAAGCGCGACGAGTGGAGCGAGAGCGGCATTGTGCGGCTGCTGGAGGCGTACGAGGCCAAGTGGCTGCTGCGGAACCGCGCCAAGCTCAAGTGGAGCGACTGGGTCGACATTGCCCACGAGGTGTCCGCCCACTGCGCCATGGAGAACGCCGCCGCCACGGGGAAGCCCGGGAGCAGCACGGCCAAGACGCCCAACCAGTGCAAGAACAAGATCGAGTCCATGAAGAAGCGGTACAGGGCGGAGTCCGCCGCGGCGGCGCGCGCCGGCCCCGCCGCCGCCGGTGCTGGCCCGTCGTGGCGGTTCTTCGCCCGCATGGACGGCTTGCTCAAAGGCCCCGCCGGCTCCGGCCAGCCGCAGGCGGAGTTGAGCAACAGCATAGACCTGCGAGCTCCTCCTCCTGCAAAGGTTGAGGTCGATGTCGATGCAGATTTCGTCAGTCAGTTAGCTGATGCAGGGCCGGGTGCACTTTCTGAATTGGTGAGTGCATATGCAAACGGCTCGATTCAAGAGAAATTGGACAAGGTTGAGAACAGTGGGCATGTTGAGGGGAGAGCTGCAGAGAGTGATGTCAATGTGAGCTCTCCGAGGATCAAGGAGGCGAACGAGGATGCCGAGGAGGTGGACAAGGTATGGGACATGTCCAAGAAGAGGAAGAACACGGAGTTTGATATCGCGAAGAGCATCGAGTTGCTGGCAAGCTCATTCTTGAAGATTGAGCGCGCAAGAATGGACCTGTACAGGGAAACAGAGAGGATGAGGGTTGAGGCTGAGATTAAGAAGGGTGAGATGGAGCTCAAGAGGACAGAGATTATGGCAAAGACGCACTTGCAGATCGCTAAGCTTTTCGCAAAGAGATTGAAGGAGTGCAGCAGCAAGACTGGTGGTAGCTCATCTGTAACAGCTGAAGTGGACAACCATGCCAAGAAAGGAGAAAATGGTTCAGGGTGATTGAAACACCAACCGATCGTCCAGAATCCAGAAAGCAGGCTTGTAGTTTTTGGTGTTCTTGTGCACCAAATGTATGTCTTTGATTGATCCGACTTCACCATGTACGAAGAGATAGTTAGCTGTAAAAGTAAAATGCAATAAATGATATGATTGTCCCCATTCAGTGGGGGATTATAGAAGCAGTTTTAGAATCAGTAACTAGCCTGAAGAAAGTTGTTGAGTTCCTTTTGTTAATATTTTTTGACTGACAGCCATCGTATGTATCATTCTACTTTTTTTAGATAATGGATTTTCATTAAAAAAAA] [+] EMBL AK103673 [ATGCGCCCGGTCCACCGCGCCTCGCCTCGCTGACCCACGGGGGCCACCTGCTGCTGGTGGTGGTGGACGGACGGAGTTGTCCGCGACGGTCTCCCACTTTCCGCCTCTTCCCCACCACCATCGTTCTCCTTCTCTTCTCCCTCTCCCACCTTTCTCCCCCCGCGCGCCCGATCCTTCCCTTCCCCCAACTCCCTCTCGCATTTCCCAGCTCGGATCCTCTTCTGACTTCTCTCTCTCTCTCCGTCTGTCTCTCTCCTCTTTCGAGGTCTTCAGTCTTCAGTGTTCTTGACGACCTTGCTGCTTCTTGCCTCTGTTTCGCCTCCTACTTGCCGTCTTCTTCTTCTTCTTGCTGCTGCTGCTGCTGCTGCT GAATTTTTCTTCGGTCAGTTAGTCGGTCAGGCCGGTGCCGGTCTGGGAGCGATTCCGCCGGACGCA CGCATCAACAGTGGAGGGAGGGGAGGGGAGGAGCTTCCCCTTTTTGATCTAGCAAGTCGTCGTCTCCAAAAATACACTTTTTTTTGTTGGGTCTTTGGAACAAAAGGGTCTCCTCCTTTTGATCTTTCTGTCTCATCACTAAATTAGCAAAGCTTTGTGCTTCGCGGCGATCTCTTTTCAGCTAATTCAGTCTCTGTTGATAGCTTCGTTGCCCAAGAGAGATCCCCCATGTCAGAGGCGAGCGGATGACACCGCAATTCGGGTCCGGTTCTTCCGCCTGAGCTGCAGAATTTTAAGCTTCCTCCGTGGTGCCGCCATGGATGCCCTTCCTGACGCCGCCGACGCGGCGCAGTT GGCGGCGGCGGCGGCGCCGCCGCAGAAGCGCGACGAGTGGAGCGAGAGCGGCATTGTGCGGCTGCTGGAGGCGTACGAGGCCAAGTGGCTGCTGCGGAACCGCGCCAAGCTCAAGTGGAGCGACTGGGTCGACATTGCCCACGAGGTGTCCGCCCACTGCGCCATGGAGAACGCCGCCGCCACGGGGAAGCCCGGGAGCAGCACGGCCAAGACGCCCAACCAGTGCAAGAACAAGATCGAGTCCATGAAGAAGCGGTACAGGGCGGAGTCCGCCGCGGCGGCGCGCGCCGGCCCCGCCGCCGCCGGTGCTGGCCCGTCGTGGCGGTTCTTCGCCCGCATGGACGGCTTGCTCAAAGGCCCCGCCGGCTCCGGCCAGCCGCAGGCGGAGTTGAGCAACAGCATAGACCTGCGAGCTCCTCCTCCTGCAAAGGTTGAGGTCGATGTCGATGCAGATTTCGTCAGTCAGTTAGCTGATGCAGGGCCGGGTGCACTTTCTGAATTGGTGAGTGCATATGCAAACGGCTCGATTCAAGAGAAATTGGACAAGGTTGAGAACAGTGGGCATGTTGAGGGGAGAGCTGCAGAGAGTGATGTCAATGTGAGCTCTCCGAGGATCAAGGAGGCGAACGAGGATGCCGAGGAGGTGGACAAGGTATGGGACATGTCCAAGAAGAGGAAGAACACGGAGTTTGATATCGCGAAGAGCATCGAGTTGCTGGCAAGCTCATTCTTGAAGATTGAGCGCGCAAGAATGGACCTGTACAGGGAAACAGAGAGGATGAGGGTTGAGGCTGAGATTAAGAAGGGTGAGATGGAGCTCAAGAGGACAGAGATTATGGCAAAGACGCACTTGCAGATCGCTAAGCTTTTCGCAAAGAGATTGAAGGAGTGCAGCAGCAAGACTGGTGGTAGCTCATCTGTAACAGCTGAAGTGGACAACCATGCCAAGAAAGGAGAAAATGGTTCAGGGTGATTGAAACACCAACCGATCGTCCAGAATCCAGAAAGCAGGCTTGTAGTTTTTGGTGTTCTTGTGCACCAAATGTATGTCTTTGATTGATCCGACTTCACCATGTACGAAGAGATAGTTAGCTGTAAAAGTAAAATGCAATAAATGATATGATTGTCCCCATTCAGTGGGGGATTATAGAAGCAG ] [+] EMBL OSS12372A [ CACCATCGTTCTCCTTCTCTTCTCCCTCTCCCACCTTTCTCCCCCCGCGCGCCCGATCCTTCCCTTCCCCCAACTCCCTCTCGCATTTCCCAGCTCGGATCCTCTTCTGACTTCTCTCTCTCTCTCCGTCTGTCTCTCTCCTCTTTCGAGGTCTTCAGTCTTCAGTGTTCTTGACGACCTTGCTGCTTCT ] [+] EMBL OSS12652A [ CACCATCGTTCTCCTTCTCTTCTCCCTCTCCCACCTTTCTCCCCCCGCGCGCCCGATCCTTCCCTTCCCCCAACTCCCTCTCGCATTTCCCAGCTCGGATCCTCTTCTGACTTCTCTCTCTCTCTCCGTCTGTCTCTCTCCTCTTTCGAGGTCTTCAGTCTTCAGTGTTCTTGACGACCTTGCTGCTTCTTGCCTCTGTTTCGCCTCCTACTTGCCGTCTTCTTCTTCTTCTTGCTGCTGCTGCTGCTGCTGCTGGAATTTTTCTTCGGTCAGTTAGTCGGTCAGGCCGGTGCCGGTCTGGGAGCGATTCCGCCGGACGGANGGAATCAACAGTGGAGGGAGGGGAGGGGAGGAGCTTNCCCTTTTTGATCTAGCAAGTCGTCG ] [+] EMBL AK068834 [ GATCCTTCCCTTCCCCCAACTCCCTCTCGCATTTCCCAGCTCGGATCCTCTTCTGACTTCTCTCTCTCTCTCCGTCTGTCTCTCTCCTCTTTCGAGGTCTTCAGTCTTCAGTGTTCTTGACGACCTTGCTGCTTCTTGCCTCTGTTTCGCCTCCTACTTGCCGTCTTCTTCTTCTTCTTGCTGCTGCTGCTGCTGCTGCT GAATTTTTCTTCGGTCAGTTAGTCGGTCAGGCCGGTGCCGGTCTGGGAGCGATTCCGCCGGACGCA CGCATCAACAGTGGAGGGAGGGGAGGGGAGGAGCTTCCCCTTTTTGATCTAGCAAGTCGTCGTCTCCAAAAATACACTTTTTTTTGTTGGGTCTTTGGAACAAAAGGGTCTCCTCCTTTTGATCTTTCTGTCTCATCACTAAATTAGCAAAGCTTTGTGCTTCGCGGCGATCTCTTTTCAGCTAATTCAGTCTCTGTTGATAGCTTCGTTGCCCAAGAGAGATCCCCCATGTCAGAGGCGAGCGGATGACACCGCAATTCGGGTCCGGTTCTTCCGCCTGAGCTGCAGAATTTTAAGCTTCCTCCGTGGTGCCGCCATGGATGCCCTTCCTGACGCCGCCGACGCGGCGCAGTT GGCGGCGGCGGCGGCGCCGCCGCAGAAGCGCGACGAGTGGAGCGAGAGCGGCATTGTGCGGCTGCTGGAGGCGTACGAGGCCAAGTGGCTGCTGCGGAACCGCGCCAAGCTCAAGTGGAGCGACTGGGTCGACATTGCCCACGAGGTGTCCGCCCACTGCGCCATGGAGAACGCCGCCGCCACGGGGAAGCCCGGGAGCAGCACGGCCAAGACGCCCAACCAGTGCAAGAACAAGATCGAGTCCATGAAGAAGCGGTACAGGGCGGAGTCCGCCGCGGCGGCGCGCGCCGGCCCCGCCGCCGCCGGTGCTGGCCCGTCGTGGCGGTTCTTCGCCCGCATGGACGGCTTGCTCAAAGGCCCCGCCGGCTCCGGCCAGCCGCAGGCGGAGTTGAGCAACAGCATAGACCTGCGAGCTCCTCCTCCTGCAAAGGTTGAGGTCGATGTCGATGCAGATTTCGTCAGTCAGTTAGCTGATGCAGGGCCGGGTGCACTTTCTGAATTGGTGAGTGCATATGCAAACGGCTCGATTCAAGAGAAATTGGACAAGGTTGAGAACAGTGGGCATGTTGAGGGGAGAGCTGCAGAGAGTGATGTCAATGTGAGCTCTCCGAGGATCAAGGAGGCGAACGAGGATGCCGAGGAGGTGGACAAGGTATGGGACATGTCCAAGAAGAGGAAGAACACGGAGTTTGATATCGCGAAGAGCATCGAGTTGCTGGCAAGCTCATTCTTGAAGATTGAGCGCGCAAGAATGGACCTGTACAGGGAAACAGAGAGGATGAGGGTTGAGGCTGAGATTAAGAAGGGTGAGATGGAGCTCAAGAGGACAGAGATTATGGCAAAGACGCACTTGCAGATCGCTAAGCTTTTCGCAAAGAGATTGAAGGAGTGCAGCAGCAAGACTGGTGGTAGCTCATCTGTAACAGCTGAAGTGGACAACCGTGCCAAGAAAGGAGAAAATGGTTCAGGGTGATTGAAACACCAACCGATCGTCCAGAATCCAGAAAGCAGGCTTGTAGTTTTTGGTGTTCTTGTGCACCAAATGTATGTCTTTGATTGATCCGACTTCACCATGTACGAAGAGATAGTTAGCTGTAAAAGTAAAATGCAATAAATGATATGATTGTCCCCATTCAGTGGGGGATTATAGAAGCAGTTTTAGAATCAGTAACTAGCCTGAAGAAAGTTGTTGAGT ] [+] EMBL CB636491 [ ATCCTTCCCTTCCCCCAACTCCCTCTCGCATTTCCCAGCTCGGATCCTCTTCTGACTTCTCTCTCTCTCTCCGTCTGTCTCTCTCCTCTTTCGAGGTCTTCAGTCTTCAGTGTTCTTGACGACCTTGCTGCTTCTTGCCTCTGTTTCGCCTCCTACTTGCCGTCTTCTTCTTCTTCTTGCTGCTGCTGCTGCTGCTGCT GAATTTTTCTTCGGTCAGTTAGTCGGTCAGGCCGGTGCCGGTCTGGGAGCGATTCCGCCGGACGCA CGCATCAACAGTGGAGGG ] [+] EMBL CA755957 [ CCTTTTTGATCTAGCAAGTCGTCGTCTCCAAAAATACACTTTTTTTTGTTGGGTCTTTGGAACAAAAGGGTCTCCTCCTTTTGATCTTTCTGTCTCATCACTAAATTAGCAAAGCTTTGTGCTTCGCGGCGATCTCTTTTCAGCTAATTCAGTCTCTGTTGATAGCTTCGTTGCCCAAGAGAGATCCCCCATGTCAGAGGCGAGCGGATGACACCGCAATTCGGGTCCGGTTCTTCCGCCTGAGCTGCAGAATTTTAAGCTTCCTCCGTGGTGCCGCCATGGATGCCCTTCCTGACGCCGCCGACGCGGCGCAGTTGGGCGGCGGCGGCGGCGCCGCCGCAGAAGCGCGACGAGTGGAGCGAGAGCGGCATTGTGCGGCTGCTGGAGGCGTACGAGGCCAAGTGGCTGCTGCGGAACCGCGCCAAGCTCAAGTGGAGCGACTGGGTCGACATTGCCCACGAGGTGTCCGCCCACTGCGCCATGGAGAACGCCGCCGCCACGGGGAAGCCCGGGAGCAGCACGGCCAAGACGCCCAACCAGTGCAAGAACAAGATCGAGTCCATGAAGAAGCGGTACAGGGCGGAGTCCGCCGCGGNGGNGCGCGCCGGCCCCGCCGCCGCCGGT ] [+] EMBL CB666478 [ CGGCGCGCGCCGGCCCCGCCGCCGCCGGTGCTGGCCCGTCGTGGCGGTTCTTCGCCCGCATGGACGGCTTGCTCAAAGGCCCCGCCGGCTCCGGCCAGCCGCAGGCGGAGTTGAGCAACAGCATAGACCTGCGAGCTCCTCCTCCTGCAAAGGTTGAGGTCGATGTCGATGCAGATTTCGTCAGTCAGTTAGCTGATGCAGGGCCGGGTGCACTTTCTGAATTGGTGAGTGCATATGCTAACGGCTCGATTCAAGAGAAATTGGACAAGGTTGAGAACAGTGGGCATGTTGAGGGGAGAGCTGCAGAGAGTGATGTCAATGTGAGCTCTCCGAGGATCAAGGAGGCGAACGAGGATGCCGAGGAGGTGGACAAGGTATGGGACATGTCCAAGAAGAGGAAGAACACGGAGTTTGATATCGCGAAGAGCATCGAGTTGCTGGCAAGCTCATTCTTGAAGATTGAGCGCGCAAGAATGGACCTGTACAGGGAAACAGAGAGGATGAGGGTTGAGGCTGAGATTAAGAAGGGTGAGATGGAGCTCAAGAGGACAGAGATTATGGCAAAGACGCACTTGCAGATCGCTAAGCTTTTCGCAAAGAGATTGAAGGAGTGCAGCAGCAAGACTGGTGGTAGCTCATCTGTAACAGCTGAAGTGGACAACCATGCCAAGAAAGGAGAAAATGGTTCAGGGTGATTGAAACACCAACCGATCGTCCAGAATCCAGAAAGCAGGCTTGTAGTTTTTGGTGTTCTTGTGCACCAAATGTATGTCTTTGATTGATCCGACTTCACCATGTACGAAGAGATAATTAGCTGTA ] [-] EMBL CB666479 [ ATAGCCCTGCGAGCTCCTCCTCCTGCAAAGGTTGAGGTCGATGTCGATGCAGATTTCGTCAGTCAGTTAGCTGATGCAGGGCCGGGTGCACTTTCTGAATTGGTGAGTGCATATGCTAACGGCTCGATTCAAGAGAAATTGGACAAGGTTGAGAACAGTGGGCATGTTGAGGGGAGAGCTGCAGAGAGTGATGTCAATGTGAGCTCTCCGAGGATCAAGGAGGCGAACGAGGATGCCGAGGAGGTGGACAAGGTATGGGACATGTCCAAGAAGAGGAAGAACCCGGAGTTTGATATCGCGAAGAGCATCGAGTTGCTGGCAAGCTCATTCTTGAAGATTGAGCGCGCAAGAATGGACCTGTTCAGGGAAACAGAGAGGATGAGGGTTGAGGCTGAGATTAAGAAGGGTGAGATGGAGCTCAAGAGGACAGAGATTATGGCAAAGACGCACTTGCAGATCGCTAAGCTTTTCGCAAAGAGATTGAAGGAGTGCAGCAGCAAGACTGGTGGTAGCTCATCTGTAACAGCTGAAGTGGACAACCATGCCAAGAAAGGAGAAAATGGTTCAGGGTGATTGAAACCCCAACCGATCGTCCAGAATCCAGAAAGCAGGCTTGTAGTTTTTGGTGTTCTTGTGCCCCAAATGTATGTCTTTGATTGATCCGACTTCCCCATGTACGAAGAGATAGTTAGCTGTAAAAGTAAAATGCAATAAATGATATGATTGTGGGCATTCAGTGGGGGATTATAGAAaaaaaaaaa ] [+] EMBL CA998847 [ AGGAAGAACACGGAGTTTGATATCGCGAAGAGCATCGAGTTGCTGGCAAGCTCATTCTTGAAGATTGAGCGCGCAAGAATGGACCTGTACAGGGAAACAGAGAGGATGAGGGTTGAGGCTGAGATTAAGAAGGGTGAGATGGAGCTCAAGAGGACAGAGATTATGGCAAAGACGCACTTGCAGATCGCTAAGCTTTTCGCAAAGAGATTGAAGGAGTGCAGCAGCAAGACTGGTGGTAGCTCATCTGTAACAGCTGAAGTGGACAACCATGCCAAGAAAGGAGAAAATGGTTCAGGGTGATTGAAACACCAACCGATCGTCCAGAATCCAGAAAGCAGGCTTGTAGTTTTTGGTGTTCTTGTGCACCAAATGTATGTCTTTGATTGATCCGACTTCACCATGTACGAAGAGATAGTTAGCTGTAAAAGTAAAATGCAATAAATGATATGATTGTCCCCATTCAGTGGGGGATTATAGAAGCAGTTTTAGAATCAGTAACTAGCCTGAAGAAAGTTGTTGAGTTCCTTTTGTTAATATTTTTTGACTGACAGCCATCGTATGTATCATTCTACTTTTTTTAGATAATGGATTTTCATTAAAAAAAA] [-] EMBL CB636492 [ AGCAGCAAGACTGGTGGTAGCTCATCTGTAACAGCTGAAGTGGACAACCATGCCAAGAAAGGAGAAAATGGTTCAGGGTGATTGAAACACCAACCGATCGTCCAGAATCCAGAAAGCAGGCTTGTAGTTTTTGGTGTTCTTGTGCACCAAATGTATGTCTTTGATTGATCCGACTTCACCATGTACGAAGAGATAGTTAGCTGTAAAAGTAAAATGCAATAAATGATATGGGTGTCCCCA TCAGTGGGGGATTATAAAAG ] [-] EMBL D43048 [ CCAGAAAGCAGGCTTGTAGTTTTTGGTGNNCTTGTGCACCAAATGTATGNCTTTGAATGATCCGACTTCACCATGTACGAAGAGATAGTTAGCTGTAAAAGTAAAATGCAATAAATGATATGATTGTCCCCATTCAGTGGGGGATTATAGAAGCAGTTTTAGAATCAGTAACTAGCCTGAAGAAAGTTGTTGAGTTCCTTTTGTTAATATTTTTTGACTGACAGCCATCGTATGTATCATTCTACTTTTTTTAGATAATGG ] consensusID : consensus_13918#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 666 fasta sequence [CCNNTTCCCGGGGGGGGTTNAAANGGGGGAAAAATTTCCGGGGGGGGNGGGGAACATATGGGTGTTATTTNGCNNCCGGGTAAAATTTTNTTTCGGTTTATTTGGGGGGATTGGGGGGGNAAAATTTNAAAAAAGGGAAAGGTNGGCCCNNGTTAACCCCCNAGGTTGGAAANTANNCCTTCATAANGGGGAAAAAAGGGGGGTTTCCCCNGNGGGGGGGCNTTTTAAGAAAAAGNGAAATCCCCNGGCGNGGGGATTNGGCCACGGGGGGAGGGNNGCCCCNCCAAANAATGGTGGGTAGTTTTTTTTTAAACAGNGGAAGNGGAAAACCATNCCNAAGGAAAGGAGGAAATGGTTCAGGGGTGATTGAAACACCAACCGTTTTGTCCAGGAATCCAGAAAGCAGGTTGTAGTTTTTGGTGTTTTTGTGCACCAAATGTATGTTTTTGATTGATCCGAATTCACCATGTACGAAGAGATAGTTAGCTGTAAAAGTAAAATGCAATAAATGATATGATTGTCCCCATTCAGTGGGGGATTATAGAAGCAGTTTTAGAATCAGTAAATAGCCTGAAGAAAGTTGTTGAGTTCCTTTTGTTAATATTTTTTGACTGACAGCCATTGTATGTATCATTTTACTTTTTTTAGATAATGGATTTTCATTAA] [-] EMBL BE229244 [CCNNTTCCCGGGGGGGGTTNAAANGGGGGAAAAATTTCCGGGGGGGGNGGGGAACATATGGGTGTTATTTNGCNNCCGGGTAAAATTTTNTTTCGGTTTATTTGGGGGGATTGGGGGGGNAAAATTTNAAAAAAGGGAAAGGTNGGCCCNNGTTAACCCCCNAGGTTGGAAANTANNCCTTCATAANGGGGAAAAAAGGGGGGTTTCCCCNGNGGGGGGGCNTTTTAAGAAAAAGNGAAATCCCCNGGCGNGGGGATTNGGCCACGGGGGGAGGGNNGCCCCNCCAAANAATGGTGGGTAGTTTTTTTTTAAACAGNGGAAGNGGAAAACCATNCCNAAGGAAAGGAGGAAATGGTTCAGGGGTGATTGAAACACCAACCGTTTTGTCCAGGAATCCAGAAAGCAGGTTGTAGTTTTTGGTGTTTTTGTGCACCAAATGTATGTTTTTGATTGATCCGAATTCACCATGTACGAAGAGATAGTTAGCTGTAAAAGTAAAATGCAATAAATGATATGATTGTCCCCATTCAGTGGGGGATTATAGAAGCAGTTTTAGAATCAGTAAATAGCCTGAAGAAAGTTGTTGAGTTCCTTTTGTTAATATTTTTTGACTGACAGCCATTGTATGTATCATTTTACTTTTTTTAGATAATGGATTTTCATTAA] consensusID : consensus_13918#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 439 fasta sequence [ATATCGCGAAGAGCATCGAGTTGCTGGCAAGCTCATTNTTGAAGATTGAGCGCGCAAGAATGGACCTGTACAGCTGAAGTGGACAACCATGCCAAGAAAGGAGAAAATGGTTCAGGGTGATTGAAACACCAACCGATCGTCCAGAATCCAGAAAGCAGGCTTGTAGTTTTTGGTGTTCTTGTGCACCAAATGTATGTCTTTGATTGATCCGACTTCNCCATGTACGAAGAGATAGTTAGCTGTAAAAGTAAAATGCAATAAATGATATGATTGTCCCCATTCAGTGGGGGATTATAGAAGCAGTTTTAGAATCAGTAACTAGCCTGAAGAAAGTTGTTGAGTTCCTTTTGTTAATATTTTTTGACTGACAGCCATCGTATGTATCATTCTACTTTTTTTAGATAATGGATTTTCATTAATCCGGCCAAAAAAAAAAAAA] [+] EMBL AU174003 [ATATCGCGAAGAGCATCGAGTTGCTGGCAAGCTCATTNTTGAAGATTGAGCGCGCAAGAATGGACCTGTACAGCTGAAGTGGACAACCATGCCAAGAAAGGAGAAAATGGTTCAGGGTGATTGAAACACCAACCGATCGTCCAGAATCCAGAAAGCAGGCTTGTAGTTTTTGGTGTTCTTGTGCACCAAATGTATGTCTTTGATTGATCCGACTTCNCCATGTACGAAGAGATAGTTAGCTGTAAAAGTAAAATGCAATAAATGATATGATTGTCCCCATTCAGTGGGGGATTATAGAAGCAGTTTTAGAATCAGTAACTAGCCTGAAGAAAGTTGTTGAGTTCCTTTTGTTAATATTTTTTGACTGACAGCCATCGTATGTATCATTCTACTTTTTTTAGATAATGGATTTTCATTAATCCGGCCAAAAAAAAAAAAA] [+] EMBL AU096186 [ aCCATGTACGATGAGATAGTTAGCTGTAAAANTAANATGCAATAAATGATATGATTGTCCCCATTCAGTGGGGGATTATAGAAGCANTTTTAGAATNAGTAACTAGCCTGAAGAAAGTTGTTGAGTTCCTTTTGTTAATATTTTTTGACTGACAGCCATCGTATGTATCATTCTACTTTTTTTAGATAATGGATTTTCATTAATCCGGCCAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13918#0 ATGCGCCCGGTCCACCGCGCCTCGCCTCGCTGACCCACGGGGGCCACCTGCTGCTGGTGG 60 consensus_13918#2 ------------------------------------------------------------ consensus_13918#1 ------------------------------------------------------------ consensus_13918#0 TGGTGGACGGACGGAGTTGTCCGCGACGGTCTCCCACTTTCCGCCTCTTCCCCACCACCA 120 consensus_13918#2 ------------------------------------------------------------ consensus_13918#1 ------------------------------------------------------------ consensus_13918#0 TCGTTCTCCTTCTCTTCTCCCTCTCCCACCTTTCTCCCCCCGCGCGCCCGATCCTTCCCT 180 consensus_13918#2 ------------------------------------------------------------ consensus_13918#1 ------------------------------------------------------------ consensus_13918#0 TCCCCCAACTCCCTCTCGCATTTCCCAGCTCGGATCCTCTTCTGACTTCTCTCTCTCTCT 240 consensus_13918#2 ------------------------------------------------------------ consensus_13918#1 ------------------------------------------------------------ consensus_13918#0 CCGTCTGTCTCTCTCCTCTTTCGAGGTCTTCAGTCTTCAGTGTTCTTGACGACCTTGCTG 300 consensus_13918#2 ------------------------------------------------------------ consensus_13918#1 ------------------------------------------------------------ consensus_13918#0 CTTCTTGCCTCTGTTTCGCCTCCTACTTGCCGTCTTCTTCTTCTTCTTGCTGCTGCTGCT 360 consensus_13918#2 ------------------------------------------------------------ consensus_13918#1 ------------------------------------------------------------ consensus_13918#0 GCTGCTGCTGAATTTTTCTTCGGTCAGTTAGTCGGTCAGGCCGGTGCCGGTCTGGGAGCG 420 consensus_13918#2 ------------------------------------------------------------ consensus_13918#1 ------------------------------------------------------------ consensus_13918#0 ATTCCGCCGGACGCACGCATCAACAGTGGAGGGAGGGGAGGGGAGGAGCTTCCCCTTTTT 480 consensus_13918#2 ------------------------------------------------------------ consensus_13918#1 ------------------------------------------------------------ consensus_13918#0 GATCTAGCAAGTCGTCGTCTCCAAAAATACACTTTTTTTTGTTGGGTCTTTGGAACAAAA 540 consensus_13918#2 ------------------------------------------------------------ consensus_13918#1 ------------------------------------------------------------ consensus_13918#0 GGGTCTCCTCCTTTTGATCTTTCTGTCTCATCACTAAATTAGCAAAGCTTTGTGCTTCGC 600 consensus_13918#2 ------------------------------------------------------------ consensus_13918#1 ------------------------------------------------------------ consensus_13918#0 GGCGATCTCTTTTCAGCTAATTCAGTCTCTGTTGATAGCTTCGTTGCCCAAGAGAGATCC 660 consensus_13918#2 ------------------------------------------------------------ consensus_13918#1 ------------------------------------------------------------ consensus_13918#0 CCCATGTCAGAGGCGAGCGGATGACACCGCAATTCGGGTCCGGTTCTTCCGCCTGAGCTG 720 consensus_13918#2 ------------------------------------------------------------ consensus_13918#1 ------------------------------------------------------------ consensus_13918#0 CAGAATTTTAAGCTTCCTCCGTGGTGCCGCCATGGATGCCCTTCCTGACGCCGCCGACGC 780 consensus_13918#2 ------------------------------------------------------------ consensus_13918#1 ------------------------------------------------------------ consensus_13918#0 GGCGCAGTTGGCGGCGGCGGCGGCGCCGCCGCAGAAGCGCGACGAGTGGAGCGAGAGCGG 840 consensus_13918#2 ------------------------------------------------------------ consensus_13918#1 ------------------------------------------------------------ consensus_13918#0 CATTGTGCGGCTGCTGGAGGCGTACGAGGCCAAGTGGCTGCTGCGGAACCGCGCCAAGCT 900 consensus_13918#2 ------------------------------------------------------------ consensus_13918#1 ------------------------------------------------------------ consensus_13918#0 CAAGTGGAGCGACTGGGTCGACATTGCCCACGAGGTGTCCGCCCACTGCGCCATGGAGAA 960 consensus_13918#2 ------------------------------------------------------------ consensus_13918#1 ------------------------------------------------------------ consensus_13918#0 CGCCGCCGCCACGGGGAAGCCCGGGAGCAGCACGGCCAAGACGCCCAACCAGTGCAAGAA 1020 consensus_13918#2 ------------------------------------------------------------ consensus_13918#1 ------------------------------------------------------------ consensus_13918#0 CAAGATCGAGTCCATGAAGAAGCGGTACAGGGCGGAGTCCGCCGCGGCGGCGCGCGCCGG 1080 consensus_13918#2 ------------------------------------------------------------ consensus_13918#1 ------------------------------------------------------------ consensus_13918#0 CCCCGCCGCCGCCGGTGCTGGCCCGTCGTGGCGGTTCTTCGCCCGCATGGACGGCTTGCT 1140 consensus_13918#2 ------------------------------------------------------------ consensus_13918#1 ------------------------------------------------------------ consensus_13918#0 CAAAGGCCCCGCCGGCTCCGGCCAGCCGCAGGCGGAGTTGAGCAACAGCATAGACCTGCG 1200 consensus_13918#2 ------------------------------------------------------------ consensus_13918#1 ------------------------------------------------------------ consensus_13918#0 AGCTCCTCCTCCTGCAAAGGTTGAGGTCGATGTCGATGCAGATTTCGTCAGTCAGTTAGC 1260 consensus_13918#2 ------------------------------------------------------------ consensus_13918#1 ------------------------------------------------------------ consensus_13918#0 TGATGCAGGGCCGGGTGCACTTTCTGAATTGGTGAGTGCATATGCAAACGGCTCGATTCA 1320 consensus_13918#2 ------------------------------------------------------------ consensus_13918#1 ------------------------------------------------------------ consensus_13918#0 AGAGAAATTGGACAAGGTTGAGAACAGTGGGCATGTTGAGGGGAGAGCTGCAGAGAGTGA 1380 consensus_13918#2 ------------------------------------------------------------ consensus_13918#1 ------------------------------------------------------------ consensus_13918#0 TGTCAATGTGAGCTCTCCGAGGATCAAGGAGGCGAACGAGGATGCCGAGGAGGTGGACAA 1440 consensus_13918#2 ------------------------------------------------------------ consensus_13918#1 ------CCNNTTCCCGGGGGGGGTTNAAANGGGGGAAAAATTTCCGGGGGGGGNGGGGAA 54 consensus_13918#0 GGTATGGGACATGTCCAAGAAGAGGAAGAACACGGAGTTTGATATCGCGAAGAGCATCGA 1500 consensus_13918#2 ------------------------------------------------------------ consensus_13918#1 CATATGGGTGTTATTTNGCNNCCGGGTAAAATTTTNTTTCGGTTTATTTGGGGGGATTGG 114 consensus_13918#0 GTTGCTGGCAAGCTCATTCTTGAAGATTGAGCGCGCAAGAATGGACCTGTACAGGGAAAC 1560 consensus_13918#2 ------------------------------------------------------------ consensus_13918#1 GGGG---GNAAA---ATTTNAAAAAAGGGA------AAGGTNGGCCCNNGTTAACCCCCN 162 consensus_13918#0 AGAGAGGATGAGGGTTGAGGCTGAGATTAAGAAGGGTGAGATGGAGCTCAAGAGGACAGA 1620 consensus_13918#2 ------------------------------------------------------------ consensus_13918#1 AGGTTGGAAANTANNCCTTCATAANGGGGAAAAAAGGGGGGTTTCCCCNGNGGGGGGGCN 222 consensus_13918#0 GATTATGGCAAAGACGCACTTGCAGATCGCTAAGCTTT--TCGCAAAGAGATTGAAGGAG 1678 consensus_13918#2 --ATATCGCGAAGA-GCATCGAGTTGCTGGCAAGCTCA--TTNTTGA-AGATTGA----G 50 consensus_13918#1 TTTTAAGAAAAAGN-GAAATCCCCNGGCGNGGGGATTNGGCCACGGGGGGAGGGNNGCCC 281 ** *** * * * * * ** * consensus_13918#0 TGCAGCAGCAAGACTGGTGGTAGCTCATCTGTAACAGCTGAAGTGGACAACCATGCCAA- 1737 consensus_13918#2 CGC----GCAAGAATGG---------ACCTGTA-CAGCTGAAGTGGACAACCATGCCAA- 95 consensus_13918#1 CNCCAAANAATGGTGGGTAGT--TTTTTTTTAAACAGNGGAAGNGGAAAACCATNCCNAA 339 * * * ** * * *** **** *** ****** ** * consensus_13918#0 -GAAAGGAGAAAATGGTTCAGGG-TGATTGAAACACCAACCGATC-GTCCAG-AATCCAG 1793 consensus_13918#2 -GAAAGGAGAAAATGGTTCAGGG-TGATTGAAACACCAACCGATC-GTCCAG-AATCCAG 151 consensus_13918#1 GGAAAGGAGGAAATGGTTCAGGGGTGATTGAAACACCAACCGTTTTGTCCAGGAATCCAG 399 ******** ************* ****************** * ****** ******* consensus_13918#0 AAAGCAGGCTTGTAGTTTTTGGTGTTCTTGTGCACCAAATGTATGTCTTTGATTGATCCG 1853 consensus_13918#2 AAAGCAGGCTTGTAGTTTTTGGTGTTCTTGTGCACCAAATGTATGTCTTTGATTGATCCG 211 consensus_13918#1 AAAGCAGG-TTGTAGTTTTTGGTGTTTTTGTGCACCAAATGTATGTTTTTGATTGATCCG 458 ******** ***************** ******************* ************* consensus_13918#0 ACTTCACCATGTACGAAGAGATAGTTAGCTGTAAAAGTAAAATGCAATAAATGATATGAT 1913 consensus_13918#2 ACTTCNCCATGTACGAAGAGATAGTTAGCTGTAAAAGTAAAATGCAATAAATGATATGAT 271 consensus_13918#1 AATTCACCATGTACGAAGAGATAGTTAGCTGTAAAAGTAAAATGCAATAAATGATATGAT 518 * *** ****************************************************** consensus_13918#0 TGTCCCCATTCAGTGGGGGATTATAGAAGCAGTTTTAGAATCAGTAACTAGCCTGAAGAA 1973 consensus_13918#2 TGTCCCCATTCAGTGGGGGATTATAGAAGCAGTTTTAGAATCAGTAACTAGCCTGAAGAA 331 consensus_13918#1 TGTCCCCATTCAGTGGGGGATTATAGAAGCAGTTTTAGAATCAGTAAATAGCCTGAAGAA 578 *********************************************** ************ consensus_13918#0 AGTTGTTGAGTTCCTTTTGTTAATATTTTTTGACTGACAGCCATCGTATGTATCATTCTA 2033 consensus_13918#2 AGTTGTTGAGTTCCTTTTGTTAATATTTTTTGACTGACAGCCATCGTATGTATCATTCTA 391 consensus_13918#1 AGTTGTTGAGTTCCTTTTGTTAATATTTTTTGACTGACAGCCATTGTATGTATCATTTTA 638 ******************************************** ************ ** consensus_13918#0 CTTTTTTTAGATAATGGATTTTCATTAA-------AAAAAA------- 2067 consensus_13918#2 CTTTTTTTAGATAATGGATTTTCATTAATCCGGCCAAAAAAAAAAAAA 439 consensus_13918#1 CTTTTTTTAGATAATGGATTTTCATTAA-------------------- 666 **************************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||