These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13924#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1608 fasta sequence [AAGACCAAAGCTATCGAGAGATCGATCACTGCACGCCAGCTGCTCGGAGAAAAGGCGAGAAGAAAATAGTGAGCTCGCAGCTAGCTAAGTTAGCTTGCTTAGCCATGGGCGAGGAAGCCGCGGCGGCCACGGTGACGGCGGCGGCGGCGGCGGCGGCGAGCGGCGGCGCGCCGCACCTGCTCCTCATCTGCTTCCCCGGGCAGGGCCACGTCAACCCGATGCTCCGGCTCGCCAAGCGCATCGCGGCGAAGGGCCTCGTCGTGACGTTCTCGTCGACGTCCGCCATCGGCGCCAAGCTCGTGGAGTCGTCCGGCGTGTCGGTCGGCGGCGACGGCGTGCCGCTCGGCGGCGGCCGGATCAGGTTCGAGTTCTTGGAGGATGGCTTCGACGGGAGCGACCTCGACGAGCTGATGCGGCACCTCGGGACGGCCGGGCCGGCGGCGTTCGCCGAGCTGCTCGCGCGGCAGGAGGCGGCGGGGCGGCCGGTGGCGTGCGTCGTCGGGAACCCGTTCATCCCGTGGGCGGTCGACGTCGCC-GCCGCCGCCGGCATCCTGTCGGCCGTGCTGTGGGTGCAGTCGTGCGCCGTGTTCTCGCTCTACTACCACCGCGTCCACGGCCTCGTCGAGTTCCCCCCCGAGGACGACCTCGACGCGCGGCTCACGCTGCCGGGGCTCCCGGCGATGTCGGTCGCCGACGTGCCGTCCTTCCTCCTCCCGTCGAACCCCTACATGAGCCTCACGGAGGCGATACAGCAGCAGATCCGCACCATCGACAAGGCGACGTGGGTGTTCGTCAACTCCTTCACCGAGCTGGAGCGCGACGTGGTGGACGCGCTCCGCGGCGTCGCGACGTCGCCGCCGCCGCCGCCGCTCATCCCCGTCGGCCCGCTGATCGAGCTGGAGGGCGACGCCGCGGTGCGCGGCGACATGATCAGGGCAGCGGACGACTGCGTCGGGTGGCTGGACGAACACCCTCCGCGCTCCGTCGTGTACGCGTCGCTCGGCAGCGTCGTGGTGCTGTCCGCCGGCGAGGTGGCGGAGATGGCGCACGGGCTCGCCTCCACCGGCCGGCCGTTCCTCTGGGTGGTGCGGCCGGACAGCCGCGCGCTGCTGCCGGAGGGGTTCCTCGACGCCGTCGCCGGCCGCGGCATGGTGGTGCCATGGAGCCCCCAGGAGCAAGTGCTCGTCCACCCCGCCGTGGCGTGCTTCCTCACGCACTGCGGCTGGAACTCGACGCTGGAGACGGTCGCCGCCGGCGTGCCGGTGGTGGCGTTCCCGCAGTGGGGGGACCAGTGCACCGACGCCATGTTCCTCGTCGACGAGCTCGGGATGGGCGTCCGCCACGTGGAGGCGTTCGTGGAGGAGGTGAAGGCGCGAGCGGCTAAGGCGTGACGTCACGCATGGAATCATAAATCGCAGCGTTTAGTTATTAAGTAAGCGGCAGGGACAGATTTAATTAATTGCTAC-TTCGTACAAGTATTTTGCCACCGGTTTGATTTTACCCAAGCGTCGT-GGTAAATAAAAATAGTGGCGCTGTCATTTTC-GTCAAAATTTTGTTTGATTTGTGTAGC-TGTTTTGGCAAAATAAAATTTAACGTATACGGACAAAA] [+] EMBL AK105236 [AAGACCAAAGCTATCGAGAGATCGATCACTGCACGCCAGCTGCTCGGAGAAAAGGCGAGAAGAAAATAGTGAGCTCGCAGCTAGCTAAGTTAGCTTGCTTAGCCATGGGCGAGGAAGCCGCGGCGGCCACGGTGACGGCGGCGGCGGCGGCGGCGGCGAGCGGCGGCGCGCCGCACCTGCTCCTCATCTGCTTCCCCGGGCAGGGCCACGTCAACCCGATGCTCCGGCTCGCCAAGCGCATCGCGGCGAAGGGCCTCGTCGTGACGTTCTCGTCGACGTCCGCCATCGGCGCCAAGCTCGTGGAGTCGTCCGGCGTGTCGGTCGGCGGCGACGGCGTGCCGCTCGGCGGCGGCCGGATCAGGTTCGAGTTCTTGGAGGATGGCTTCGACGGGAGCGACCTCGACGAGCTGATGCGGCACCTCGGGACGGCCGGGCCGGCGGCGTTCGCCGAGCTGCTCGCGCGGCAGGAGGCGGCGGGGCGGCCGGTGGCGTGCGTCGTCGGGAACCCGTTCATCCCGTGGGCGGTCGACGTCGCC GCCGCCGCCGGCATCCTGTCGGCCGTGCTGTGGGTGCAGTCGTGCGCCGTGTTCTCGCTCTACTACCACCGCGTCCACGGCCTCGTCGAGTTCCCCCCCGAGGACGACCTCGACGCGCGGCTCACGCTGCCGGGGCTCCCGGCGATGTCGGTCGCCGACGTGCCGTCCTTCCTCCTCCCGTCGAACCCCTACATGAGCCTCACGGAGGCGATACAGCAGCAGATCCGCACCATCGACAAGGCGACGTGGGTGTTCGTCAACTCCTTCACCGAGCTGGAGCGCGACGTGGTGGACGCGCTCCGCGGCGTCGCGACGTCGCCGCCGCCGCCGCCGCTCATCCCCGTCGGCCCGCTGATCGAGCTGGAGGGCGACGCCGCGGTGCGCGGCGACATGATCAGGGCAGCGGACGACTGCGTCGGGTGGCTGGACGAACACCCTCCGCGCTCCGTCGTGTACGCGTCGCTCGGCAGCGTCGTGGTGCTGTCCGCCGGCGAGGTGGCGGAGATGGCGCACGGGCTCGCCTCCACCGGCCGGCCGTTCCTCTGGGTGGTGCGGCCGGACAGCCGCGCGCTGCTGCCGGAGGGGTTCCTCGACGCCGTCGCCGGCCGCGGCATGGTGGTGCCATGGAGCCCCCAGGAGCAAGTGCTCGTCCACCCCGCCGTGGCGTGCTTCCTCACGCACTGCGGCTGGAACTCGACGCTGGAGACGGTCGCCGCCGGCGTGCCGGTGGTGGCGTTCCCGCAGTGGGGGGACCAGTGCACCGACGCCATGTTCCTCGTCGACGAGCTCGGGATGGGCGTCCGCCACGTGGAGGCGTTCGTGGAGGAGGTGAAGGCGCGAGCGGCTAAGGCGTGACGTCACGCATGGAATCATAAATCGCAGCGTTTAGTTATTAAGTAAGCGGCAGGGACAGATTTAATTAATTGCTAC TTCGTACAAGTATTTTGCCACCGGTTTGATTTTACCCAAGCGTCGT GGTAAATAAAAATAGTGGCGCTGTCATTTTC GTCAAAATTTTGTTTGATTTGTGTAGC TGTTTTGGCAAAATAAAATTTAACGT ] [+] EMBL CB624108 [ AGAGATCGATCACTGCACGCCAGCTGCTCGGAGAAAAGGCGAGAAGAAAATAGTGAGCTCGCAGCTAGCTAAGCTAGCTTGCTTAGCCATGGGCGAGGAAGCCGCGGCGGCCACGGTGACGGCGGCGGCGGCGGCGGCGGCGAGCGGCGGCGCGCCGCACCTGCTCCTCATCTGCTTCCCCGGGCAGGGCCACGTCAACCCGATGCTCCGGCTCGCCAAGCGCATCGCGGCGAAGGGCCTCGTCGTGACGTTCTCGTCGACGTCCGCCATCGGCGCCAAGCTCGTGGAGTCGTCCGGCGTGTCGGTCGGCGGCGACGGCGTGCCGCTCGGCGGCGGCCGGATCAGGTTCGAGTTCTTGGAGGATGGCTTCGACGGGAGCGACCTCGACGAGCTGATGCGGCACCTCGGGACGGCCGGGCCGGCGGCGTTCGCCGAGCTGCTCGCGCGGCAGGAGGCGGCGGGGCGGCCGGTGGCGTGCGTCGTCGGGAACCCGTTCATCCCGTGGGCGGTCGACGTTGCCTGCCGCCGCCGGCATCCCGTCTGCCGTGCTGTGGGT ] [+] EMBL AU067948 [ GAGATCGATCACTGCACGCCAGCTGCTCGGAGAAAAGGCGAGAAGAAAATAGTGAGCTCGCAGCTAGCTAAGTTAGCTTGCTTAGCCATGGGCGAGGAAGCCGCGNCGGCCACGGTGACGGCGGCGGCGGCGGCGGCGNNGAGCGNCGGCGCGCCGANCCTGCTCCTCATCTGCTTCCCCGGGCAGGGCCACGTCAACCCGATGCTCCGGCTCGNCAAGCGCATCG GGCGAAGGGCCTNGTCGTGACGTTCTCGTCGACGTCCGTCATCGG GNCAAGCTCGTGGAGTCGTCCGGCGTGTCGGTC ] [+] EMBL CB643540 [ TCGATCTCTGCACGCCAGCTGCTCGGAGAAAAGGCGAGAAGAAAATAGTGAGCTCGCAGCTAGCTAAGTTAGCTTGCTTAGCCATGGGCGAGGAAGCCGCGGCGGCCACGGTGACGGCGGCGGCGGCGGCGGCGGCGAGCGGCGGCGCGCCGCACCTGCTCCTCATCTGCTTCCCCGGGCAGGGCCACGTCAACCCGATGCTCCGGCTCGCCAAGCGCATCGCGGCGAAGGGCCTCGTCGTGACGTTCTCGTCGACGTCCGCCATCGGCGCCAAGCTCGTGGAGTCGTCCGGCGTGTCGGTCGGCGGCGACGGCGTGCCGCTCGGCGGCGGCCGGATCAGGTTCGAGTTCTTGGAGGATGGCTTCGACGGGAGCGACCTCGACGAGCTGATGCGGCACCTCGGGACGGCCGGGCCGGCGGCGTTCGCCGAGCTGCTCGCGCGGCAGGAGGCGGCGGGGCGGCCGGTGGCGTGCGTCGTCGGGAACCCGTTCATCCCGTGGGCGGCCGACCTGGAC CCCATCGCCGGGGTCCTGGGGGCCGCGCTGGGGGTGCAGACGGGCTCCGTGATCGCGCTCTA ] [+] EMBL BI808840 [ AATCATAAATCGCAGCGTTTAGTTATTAAGTAAGCGGCAGGGACAGATTTAATTAATTGCTACATTCGTACAAGTATTTTGCCACCGGTTTGATGTTACCCAAGCGTCGTCGGTAAATAAACATAGTGGCGCTGTCATTTTCAGTCAAAATTTTGTTTGGTTTGTGTAGCATGTTTTGGCCAAATAAAATTTAACGTATACGGACAAAA] consensusID : consensus_13924#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 932 fasta sequence [GAGGGCGACGCCGCGGTGCGCGGCGACATGATCAGGGCAGCGGACGACTGCGTCGGGTGGCTGGACGAACACCCTCCGCGCTCCGTCGTGTACGCGTCGCTCGGCAGCGTCGTGGTGCTGTCCGCCGGCGAGGTGGCGGAGATGGCGCACGGGCTCGCCTCCACCGGCCGGCCGTTCCTCTGGGTGGTGCGGCCGGACAGCCGCACGCTGCTGCCGGAGGGGTTCCTCGACGCCGTCGCCGGCCGCGGCATGGTGGTGCCATGGAGCCCCCAGGAGCAAGTGCTCGTCCACCCCGCCGTGGCGTGCTTCCTCACGCACTGCGGCTGGAACTCGACGCTGGAGACGGTCGCCGCCGGCGTGCCGGTGGTGGCGTTCCCGCAGTGGGGGGACCAGTGCACCGACGCCATGTTCCTCGTCGACGAGCTCGGGATGGGCGTCCGCCTCCGCGCGCCGCTGCGGCGCGGCGCCGTGCGCGACGCCGTCGACGCCGCCGTGGCGGGGCCCGACGCCGGCGCGATGCGGTCCAGCGCCGCGGCGTGGAGCGCCGCCGCGCGGGCGGCCGTGGCGGCCGGCGGCTCGTCGGACCGCCACGTGGAGGCGTTCGTGGAGGAGGTGAAGGCGCGAGCGGCTAAGGCGTGACGTCACGCATGGAATCATAAATCGCAGCGTTTAGTTATTAAGTAAGCGGCAGGGACAGATTTAATTAATTGCTACTTCGTACAAGTATTTTGCCACCGGTTTGATTTTACCCAAGCGTCGTGGTAAATAAAAATAGTGGCGCTGTCATTTTCGTCAAAA--TAAAAGAGATTTGTGTAGCTGTTTTGGCAAAATAAAATTTAGCGTATACGGGCCCTCCTTTAAAGTATTGATCGTGAGCTGATACCGAACCCAATTGCTGATTTCGCCTGTAGCCGCCGCGGTCACTGTGTCCG] [-] EMBL CB624109 [GAGGGCGACGCCGCGGTGCGCGGCGACATGATCAGGGCAGCGGACGACTGCGTCGGGTGGCTGGACGAACACCCTCCGCGCTCCGTCGTGTACGCGTCGCTCGGCAGCGTCGTGGTGCTGTCCGCCGGCGAGGTGGCGGAGATGGCGCACGGGCTCGCCTCCACCGGCCGGCCGTTCCTCTGGGTGGTGCGGCCGGACAGCCGCACGCTGCTGCCGGAGGGGTTCCTCGACGCCGTCGCCGGCCGCGGCATGGTGGTGCCATGGAGCCCCCAGGAGCAAGTGCTCGTCCACCCCGCCGTGGCGTGCTTCCTCACGCACTGCGGCTGGAACTCGACGCTGGAGACGGTCGCCGCCGGCGTGCCGGTGGTGGCGTTCCCGCAGTGGGGGGACCAGTGCACCGACGCCATGTTCCTCGTCGACGAGCTCGGGATGGGCGTCCGCCTCCGCGCGCCGCTGCGGCGCGGCGCCGTGCGCGACGCCGTCGACGCCGCCGTGGCGGGGCCCGACGCCGGCGCGATGCGGTCCAGCGCCGCGGCGTGGAGCGCCGCCGCGCGGGCGGCCGTGGCGGCCGGCGGCTCGTCGGACCGCCACGTGGAGGCGTTCGTGGAGGAGGTGAAGGCGCGAGCGGCTAAGGCGTGACGTCACGCATGGAATCATAAATCGCAGCGTTTAGTTATTAAGTAAGCGGCAGGGACAGATTTAATTAATTGCTACTTCGTACAAGTATTTTGCCACCGGTTTGATTTTACCCAAGCGTCGTGGTGAATAAAAATAGTGGCGCTGTCATTTTCGTCAAAA AAAAAGAGA ] [-] EMBL CB624012 [ CGACATGATCAGGGCAGCGGACGACTGCGTCGGGTGGCTGGACGAACACCCTCCGCGCTCCGTCGTGTACGCGTCGCTCGGCAGCGTCGTGGTGCTGTCCGCCGGCGAGGTGGCGGAGATGGCGCACGGGCTCGCCTCCACCGGCCGGCCGTTCCTCTGGGTGGTGCGGCCGGACAGCCGCACGCTGCTGCCGGAGGGGTTCCTCGACGCCGTCGCCGGCCGCGGCATGGTGGTGCCATGGAGCCCCCAGGAGCAAGTGCTCGTCCACCCCGCCGTGGCGTGCTTCCTCACGCACTGCGGCTGGAACTCGACGCTGGAGACGGTCGCCGCCGGCGTGCCGGTGGTGGCGTTCCCGCAGTGGGGGGACCAGTGCACCGACGCCATGTTCCTCGTCGACGAGCTCGGGATGGGCGTCCGCCTCCGCGCGCCGCTGCGGCGCGGCGCCGTGCGCGACGCCGTCGACGCCGCCGTGGCGGGGCCCGACGCCGGCGCGATGCGGTCCAGCGCCGCGGCGTGGAGCGCCGCCGCGCGGGCGGCCGTGGCGGCCGGCGGCTCGTCGGACCGCCACGTGGAGGCGTTCGTGGAGGAGGTGAAGGCGCGAGCGGCTAAGGCGTGACGTCACGCATGGAATCATAAATCGCAGCGTTTAGTTATTAAGTAAGCGGCAGGGACAGATTTAATTAATTGCTACTTCGTACAAGTATTTTGCCACCGGTTTGATTTTACCCAAGCGTCGTGGGGAATAAAAATAGTGGCGCTGTCATTTTCGTCAAAA AAAAAGGGA ] [-] EMBL CB671580 [ GTCGTGGTGCTGTCCGCCGGGGAGGTGGCGGAGATGGCGCACGGGCTCGCCTCCACCGGCCGGCCGTTCCTCTGGGTGGTGCGGCCGGACAGCCGCGCGCTGCTGCCGGAGGGGTTCCTCGACGCCGTCGCCGGCCGCGGCATGGTGGTGCCATGGAGCCCCCAGGAGCAAGTGCTCGTCCACCCCGCCGTGGCGTGCTTCCTCACGCACTGCGGCTGGAACTCGACGCTGGAGACGGTCGCCGCCGGCGTGCCGGTGGTGGCGTTCCCGCAGTGGGGGGACCAGTGCACCGACGCCATGTTCCTCGTCGACGAGCTCGGGATGGGCGTCCGCCTCCGCGCGCCGCTGCGGCGCGGCGCCGTGCGCGACGCCGTCGACGCCGCCGTGGCGGGGCCCGACGCCGGCGCGATGCGGTCCAGCGCCGCAGCGTGGAGCGCCGCCGCGCGGGCGGCCGTGGCGGCCGGCGGCTCGTCGGACCGCCACGTGGAGGCGTTCGTGGAGGAGGTGAAGGCGCGAGCGGCTAAGGCGTGACGTCACGCATGGAATCATAAATCGCAGCGTTTAGTTATTAAGTAAGCGGCAGGGACAGATTTAATTAATTGCTACTTCGTACAAGTATTTTGCCACCGGTTTGATTTTACCCAAGCGTCGTAGGAAATAAAAATAGTGGCGCTGT ] [-] EMBL CB646316 [ GCCGGACAGCCGCGCGCTGCTGCCGGAGGGGTTCCTCGACGCCGTCGCCGGCCGCGGCATGGTGGTGCCATGGAGCCCCCAGGAGCAAGTGCTCGTCCACCCCGCCGTGGCGTGCTTCCTCACGCACTGCGGCTGGAACTCGACGCTGGAGACGGTCGCCGCCGGCGTGCCGGTGGTGGCGTTCCCGCAGTGGGGGGACCAGTGCACCGACGCCATGTTCCTCGTCGACGAGCTCGGGATGGGCGTCCGCCTCCGCGCGCCGTTGCGGCGCGGCGCCGTGCGCGACGCCGTCGACGCCGCCGTGGCGGGGCCCGACGCCGGCGCGATGCGGTCCAGCGCCGCAGCGTGGAGCGCCGCCGCGCGGGCGGCCGTGGCGGCCGGCGGCTCGTCGGACCGCCACGTGGAGGCGTTCGTGGAGGAGGTGAAGGCGCGAGCGGCTAAGGCGTGACGTCACGCATGGAATCATAAATCGCAGCGTTTAGTTATTAAGTAAGCGGCAGGGACAGATTTAATTAATTGCTACTTCGTACAAGTATTTTGCCACGGGGTTGATTTTACCCAAGCGTCGTGGTAAATAAAAATAGTGGCGCTGTCATTTTCNTCAAAA Ttttgttt ] [-] EMBL CB622751 [ CTCGACGCAGTCGCCGGCCGCGGCATGGTGGTGCCATGGAGCCCCCAGGAGCAAGTGTTCGTCCACCCCGCCGTGGCGTGATTCCTCACGCTGTGCGGATGGAACTCGACGCTGGAGTCGGTCGCCGCCGGCGTGCCGGTGGTGGCGTTCCCGCAGTGGGGGGACCAGTGCACGGACGCCATGTTCCTCGTCGACGAGCTTGGGATGGGCGTCCGCATCCGCGCGCCGATGCGGCGCGGCGCCGTGCGTGACGCCGTAGACGCCGCCGTGGCGGGGCCCGACGCCGGCGCGATGCGGTCCAGCGCCGCGGCGTGGAGCGCCGCCGCGCGGGCGGCCGTGGCGGCCGGCGGCTCGTCGGACCGCCACGTGGAGGCGTTCGTGGAGGAGGTGAAGGCGCGAGCGGCTAAGGCGTGACGTCACGCATGGAATCATAAATCGCAGCGTTTAGTTATTAAGTAAGCGGCAGGGACAGATTTAATTAATTGCTACTTCGTACAAGTATTTTGCCACCGGTTTGATTTTACCCAAGCGTCGTAGTAAATAAAAATAGTGGCGCTGTCATTTTCGTCAAAA TAAAAGAGA ] [-] EMBL CB643541 [ GGGGGCCCAGTGCACCGACGCCATGTTCCTCGTCGACGAGCTCGGGATGGGCGTCCGCCTCCGCGCGCCGCTGCGGCGCGGCGCCGTGCGCGACGCCGTCGTCGCCGCCGTGGCGGGGCCCGACGCCGGCGCGATGCGGTCCAGCGCCGCAGCGTGGAGCGCCGCCGCGCGGGCGGCCGTGGCGGCCGGCGGCTCGTCGGACCGCCCCGTGGAGGCGTTCGTGGAGGAGGTGAAGGCGCGAGCGGCTAAGGCGTGACGTCACGCATGGAATCATAAATCGCAGCGTTTAGTTATTTAGTAAGCGGCAGGGACCGATTTAATTAATTGCTACTTCGTCCAAGTATTTTGCCCCCGGTTTGATTTTACCCAAGCGTCGTGGTAAATAAAAATAGTGGCGCTGTCATTTTCGTCAAAATTTTGTTCTGATTTGTGTAGCTGTTTTGGCAAAATAAAATTTAGCGTATACGGGCCCTCCTTTAAAGTATTGATCGTGAGCTGATACCGAACCCAATTGCTGATTTCGCCTGTAGCCGCCGCGGTCACTGTGTCCG] consensusID : consensus_13924#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 563 fasta sequence [CCCNNANTTTTTTTTTTTTTTTTTGGGGGGGGGGGGGGGNTTNAAAAAAANANAAANACNCGNGNNNNCCCCCNNNTTGTTTAANCCCCCNCCTTGGGNAAAAAANGGGGGTTNCCCCCCGGGGGGGGNCNGTTTTNGGAAAAAAAGAANTCCCCCNGGGGCCNGGAATTTNGCCANGAGNGGGGGGGAAGGGGTCCCAGCNCCNCCAGCGTGGNGCGCCCCCCGCGCGGGCGGCCGTGGCGGCCGGCGGTTTGTNGGACCGCCAACGTGGAGGCGTTTNGTGGAGGAGGTGAAGGCGCGAGCGGCTAAGGCGTGACGTCACGCATGGAATCATAAATCGCAGCGTTTAGTTATTAAGTAAGCGGCAGGGACAGATTTAATTAATTGCTACTTCGTACAAGTATTTTGCCACCGGTTTGATTTTACCCAAGCGTCGTGGTAAATAAAAATAGTGGCGCTGTCATTTTCGTCAAAATTTTGTTTGATTTGTGTAGCTGTTTTGGCAAAATAAAATTTAACGTATACGGACACACATTTAAAGTATTAAACGTNANANAAAAANA] [+] EMBL AA753943 [CCCNNANTTTTTTTTTTTTTTTTTGGGGGGGGGGGGGGGNTTNAAAAAAANANAAANACNCGNGNNNNCCCCCNNNTTGTTTAANCCCCCNCCTTGGGNAAAAAANGGGGGTTNCCCCCCGGGGGGGGNCNGTTTTNGGAAAAAAAGAANTCCCCCNGGGGCCNGGAATTTNGCCANGAGNGGGGGGGAAGGGGTCCCAGCNCCNCCAGCGTGGNGCGCCCCCCGCGCGGGCGGCCGTGGCGGCCGGCGGTTTGTNGGACCGCCAACGTGGAGGCGTTTNGTGGAGGAGGTGAAGGCGCGAGCGGCTAAGGCGTGACGTCACGCATGGAATCATAAATCGCAGCGTTTAGTTATTAAGTAAGCGGCAGGGACAGATTTAATTAATTGCTACTTCGTACAAGTATTTTGCCACCGGTTTGATTTTACCCAAGCGTCGTGGTAAATAAAAATAGTGGCGCTGTCATTTTCGTCAAAATTTTGTTTGATTTGTGTAGCTGTTTTGGCAAAATAAAATTTAACGTATACGGACACACATTTAAAGTATTAAACGTNANANAAAAANA] [+] EMBL BI807589 [ GGCGGCCGGCGGCTCGTCGGACCGCC ACGTGGAGGCG TTCTTGGAGGAGGTGAAGGCGCGA C GCTAAGGCGTGACGTCACGCATGGAATCATAAATCGCAGCGTTTAGTTATTAAGTAAGCGGCAGGGACAGATTTAATTAATTGCTACTTCGTACAAGTATTTTGCCACCGGTTTGATTTTACCCAAGCGTCGTGGTAAATAAAAATAGTGGCGCTGTCATTTTCGTCAAAATTTTGTTTGGTTTGTGTAGCTGTTTTGGCAAAATAAAATTTAACGTATAaaaaaaaaa ] consensusID : consensus_13924#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 323 fasta sequence [GAGAGATCGATCACTGCACGCCAGCTGCTCGGAGAAAAGGCGAGAAGAAAATAGTGAGCTCGNAGNTAGCTAAGTTAGCTTGCTTAGCCATGGGCGAGGAAGCCGCCGCCGCTCATCCCCGTCGGCCCGCTGATCGAGCTGGAGGGCGACGCGCGGTGCGCGCANCGATNGATCAGGGCAGCGGACGACTGCGTCGNGTTGGCTGGACGAACACCCTCCGCGCTCCGTCGTGTACGCGTCGCTCNGGCAGNGTCGTGGTGCTGTCCGCCGGCGAGGTGGCGGAGATGNCGCACGTGCTCGCCTCCAACGGNCGGCCGTTCCTC] [+] EMBL AU069652 [GAGAGATCGATCACTGCACGCCAGCTGCTCGGAGAAAAGGCGAGAAGAAAATAGTGAGCTCGNAGNTAGCTAAGTTAGCTTGCTTAGCCATGGGCGAGGAAGCCGCCGCCGCTCATCCCCGTCGGCCCGCTGATCGAGCTGGAGGGCGACGCGCGGTGCGCGCANCGATNGATCAGGGCAGCGGACGACTGCGTCGNGTTGGCTGGACGAACACCCTCCGCGCTCCGTCGTGTACGCGTCGCTCNGGCAGNGTCGTGGTGCTGTCCGCCGGCGAGGTGGCGGAGATGNCGCACGTGCTCGCCTCCAACGGNCGGCCGTTCCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13924#0 AAGACCAAAGCTATCGAGAGATCGATCACTGCACGCCAGCTGCTCGGAGAAAAGGCGAGA 60 consensus_13924#3 ------------------------------------------------------------ consensus_13924#1 ------------------------------------------------------------ consensus_13924#2 ------------------------------------------------------------ consensus_13924#0 AGAAAATAGTGAGCTCGCAGCTAGCTAAGTTAGCTTGCTTAGCCATGGGCGAGGAAGCCG 120 consensus_13924#3 ------------------------------------------------------------ consensus_13924#1 ------------------------------------------------------------ consensus_13924#2 ------------------------------------------------------------ consensus_13924#0 CGGCGGCCACGGTGACGGCGGCGGCGGCGGCGGCGGCGAGCGGCGGCGCGCCGCACCTGC 180 consensus_13924#3 ------------------------------------------------------------ consensus_13924#1 ------------------------------------------------------------ consensus_13924#2 ------------------------------------------------------------ consensus_13924#0 TCCTCATCTGCTTCCCCGGGCAGGGCCACGTCAACCCGATGCTCCGGCTCGCCAAGCGCA 240 consensus_13924#3 ------------------------------------------------------------ consensus_13924#1 ------------------------------------------------------------ consensus_13924#2 ------------------------------------------------------------ consensus_13924#0 TCGCGGCGAAGGGCCTCGTCGTGACGTTCTCGTCGACGTCCGCCATCGGCGCCAAGCTCG 300 consensus_13924#3 ------------------------------------------------------------ consensus_13924#1 ------------------------------------------------------------ consensus_13924#2 ------------------------------------------------------------ consensus_13924#0 TGGAGTCGTCCGGCGTGTCGGTCGGCGGCGACGGCGTGCCGCTCGGCGGCGGCCGGATCA 360 consensus_13924#3 ------------------------------------------------------------ consensus_13924#1 ------------------------------------------------------------ consensus_13924#2 ------------------------------------------------------------ consensus_13924#0 GGTTCGAGTTCTTGGAGGATGGCTTCGACGGGAGCGACCTCGACGAGCTGATGCGGCACC 420 consensus_13924#3 ------------------------------------------------------------ consensus_13924#1 ------------------------------------------------------------ consensus_13924#2 ------------------------------------------------------------ consensus_13924#0 TCGGGACGGCCGGGCCGGCGGCGTTCGCCGAGCTGCTCGCGCGGCAGGAGGCGGCGGGGC 480 consensus_13924#3 ------------------------------------------------------------ consensus_13924#1 ------------------------------------------------------------ consensus_13924#2 ------------------------------------------------------------ consensus_13924#0 GGCCGGTGGCGTGCGTCGTCGGGAACCCGTTCATCCCGTGGGCGGTCGACGTCGCCGCCG 540 consensus_13924#3 ------------------------------------------------------------ consensus_13924#1 ------------------------------------------------------------ consensus_13924#2 ------------------------------------------------------------ consensus_13924#0 CCGCCGGCATCCTGTCGGCCGTGCTGTGGGTGCAGTCGTGCGCCGTGTTCTCGCTCTACT 600 consensus_13924#3 ------------------------------------------------------------ consensus_13924#1 ------------------------------------------------------------ consensus_13924#2 ------------------------------------------------------------ consensus_13924#0 ACCACCGCGTCCACGGCCTCGTCGAGTTCCCCCCCGAGGACGACCTCGACGCGCGGCTCA 660 consensus_13924#3 ------------------------------------------------------------ consensus_13924#1 ------------------------------------------------------------ consensus_13924#2 ------------------------------------------------------------ consensus_13924#0 CGCTGCCGGGGCTCCCGGCGATGTCGGTCGCCGACGTGCCGTCCTTCCTCCTCCCGTCGA 720 consensus_13924#3 ------------------------------------------------------------ consensus_13924#1 ------------------------------------------------------------ consensus_13924#2 ------------------------------------------------------------ consensus_13924#0 ACCCCTACATGAGCCTCACGGAGGCGATACAGCAGCAGATCCGCACCATCGACAAGGCGA 780 consensus_13924#3 -------------------------GAGAGATCGATCACTGCACGCCAGCTGCTCGGAGA 35 consensus_13924#1 ------------------------------------------------------------ consensus_13924#2 -------------------------------CCCNNANTTTTTTTTTTTTTTTTTGGGGG 29 consensus_13924#0 CGTGGGTGTTCGTCAACTCCTTCACCGAGCTGGAGCGCGACGTGGTGGACGCGCTCCGCG 840 consensus_13924#3 AAAGGCGAGAAGAAAAT------AGTGAGCTCGNAGNTAGCTAAGTTAGCTTGCTTAGCC 89 consensus_13924#1 ------------------------------------------------------------ consensus_13924#2 GGGGGGGGGGNTTNAA-------AAAAANANAAANACNCGNGNNNNCCCCCNNNTTGTTT 82 consensus_13924#0 GCGTCGCGACGTCGCCGCCGCCGCCGCCGCTCATCCCCGTCGGCCCGCTGATCGAGCTGG 900 consensus_13924#3 ATG-------GGCGAGGAAGCCGCCGCCGCTCATCCCCGTCGGCCCGCTGATCGAGCTGG 142 consensus_13924#1 -----------------------------------------------------------G 1 consensus_13924#2 AANCCCCCNCCTTGGGNAAAAAANGGGGGTTNCCCCCCGGGGGGGGNCNGTTTTNGGAAA 142 consensus_13924#0 AGGGCGACGC-CGCGGTGCGCGGCGACATGATCAGGGCAGCGGACGACTGCGTC--GGGT 957 consensus_13924#3 AGGGCGACGCGCGGTGCGCGCANCGATN-GATCAGGGCAGCGGACGACTGCGTC--GNGT 199 consensus_13924#1 AGGGCGACGC-CGCGGTGCGCGGCGACATGATCAGGGCAGCGGACGACTGCGTC--GGGT 58 consensus_13924#2 AAAAGAANTCCCCCNGGGGCCNGGAATTTNGCCANGAGNGGGGGGGAAGGGGTCCCAGCN 202 * * * * * * * * ** * * ** ** * *** consensus_13924#0 -GGCTGGACGAACACCCTCCGCGCTCCGTCGTGTACGCGTCGCTCGG-CAGCGTCGTGGT 1015 consensus_13924#3 TGGCTGGACGAACACCCTCCGCGCTCCGTCGTGTACGCGTCGCTCNGGCAGNGTCGTGGT 259 consensus_13924#1 -GGCTGGACGAACACCCTCCGCGCTCCGTCGTGTACGCGTCGCTCGG-CAGCGTCGTGGT 116 consensus_13924#2 CCNCCAGCGTGGNGCGCCCCCCGCGCGG--GCGGCCGTGGCGGCCGG-CGGT-TTGTNGG 258 * * * * ** *** * * * * ** * ** * * * * * ** * consensus_13924#0 GCTGTCCGC-CGGCGAGGT--GGCGGAGATGGCGCACGGGCTCGCCTCCACCGGCCGGCC 1072 consensus_13924#3 GCTGTCCGC-CGGCGAGGT--GGCGGAGATGNCGCACGTGCTCGCCTCCAACGGNCGGCC 316 consensus_13924#1 GCTGTCCGC-CGGCGAGGT--GGCGGAGATGGCGCACGGGCTCGCCTCCACCGGCCGGCC 173 consensus_13924#2 ACCGCCAACGTGGAGGCGTTTNGTGGAGGAGGTGAAGGCGCGAGCGGCTAAGGCGTGACG 318 * * * * ** * ** * **** * * * * ** ** * * * * * consensus_13924#0 GTTCCTCTGGGTGGTGCGGCCGGACAGCCGCGCGCTGCTGCCGGAGGGGTTCCTCGACGC 1132 consensus_13924#3 GTTCCTC----------------------------------------------------- 323 consensus_13924#1 GTTCCTCTGGGTGGTGCGGCCGGACAGCCGCACGCTGCTGCCGGAGGGGTTCCTCGACGC 233 consensus_13924#2 TCACGCATGGAATCATAAATCGCAGCGTTTAGTTATTAAGTAAGCGGCAGGGACAGATTT 378 * consensus_13924#0 CGTCGCCGGCCGCGGCATGGTGGTGCCATGGAGCCCCCAGGAGCAAGTGCTCGT-CCACC 1191 consensus_13924#3 ------------------------------------------------------------ consensus_13924#1 CGTCGCCGGCCGCGGCATGGTGGTGCCATGGAGCCCCCAGGAGCAAGTGCTCGT-CCACC 292 consensus_13924#2 AATTAATTGCTACTTCGTACAAGTATTTTGCCACCGGTTTGATTTTACCCAAGCGTCGTG 438 consensus_13924#0 CCGCCGTGGCGTGCTTCCTCACGCACTGCGGCTGGAACTCGACGCTGGAGACGGTCGCCG 1251 consensus_13924#3 ------------------------------------------------------------ consensus_13924#1 CCGCCGTGGCGTGCTTCCTCACGCACTGCGGCTGGAACTCGACGCTGGAGACGGTCGCCG 352 consensus_13924#2 GTAAATAAAAATAGTGGCGCTGTCATTTTCGTCAAAATTTTGTTT----GATTTGTGTAG 494 consensus_13924#0 CCGGCGTGCCGGTGGTGGCGTTCCCGCAGTGGGGGGACCAGTGCACCGACGCCATGTTCC 1311 consensus_13924#3 ------------------------------------------------------------ consensus_13924#1 CCGGCGTGCCGGTGGTGGCGTTCCCGCAGTGGGGGGACCAGTGCACCGACGCCATGTTCC 412 consensus_13924#2 CTGTTTTGGCAAAATAAAATTTAACGTATACGGACACACATTTAAAGTATTAAACGTNAN 554 consensus_13924#0 TCGTCGACGAGCTCGGGATGGGCGTCCGCCACGTGGAGGCGTTCGTGGAGGAGGTGAAGG 1371 consensus_13924#3 ------------------------------------------------------------ consensus_13924#1 TCGTCGACGAGCTCGGGATGGGCGTCCGCCTCCGCGCGCCGCTGCGGCGCGGCGCCGTGC 472 consensus_13924#2 ANAAAAANA--------------------------------------------------- 563 consensus_13924#0 CGCGAGCGGCTAAGGCGTGACGTCACGCATGGAATCATAAATCGCAGCGTTTAGTTATTA 1431 consensus_13924#3 ------------------------------------------------------------ consensus_13924#1 GCGACGCCGTCGACGCCGCCGTGGCGGGGCCCGACGCCGGCGCGATGCGGTCCAGCGCCG 532 consensus_13924#2 ------------------------------------------------------------ consensus_13924#0 AGTAAGCGGCAGGGACAGATTTAATTAATTGCTACTTCGTACAAGTATTTTGCCACCGGT 1491 consensus_13924#3 ------------------------------------------------------------ consensus_13924#1 CGGCGTGGAGCGCCGCCGCGCGGGCGGCCGTGGCGGCCGGCGGCTCGTCGGACCGCCACG 592 consensus_13924#2 ------------------------------------------------------------ consensus_13924#0 TTGATTTTACCCAAGCGTCGTGGTAAATAAAAATAGTGGCGCTGTCATTTTCGTCAAAAT 1551 consensus_13924#3 ------------------------------------------------------------ consensus_13924#1 TGGAGGCGTTCGTGGAGGAGGTGAAGGCGCGAGCGGCTAAGGCGTGACGTCACGCATGGA 652 consensus_13924#2 ------------------------------------------------------------ consensus_13924#0 TTTGTTTGATTTGTGTAGCTGTTTTGGCAAAATAAAATTTAACGTATACGGACAAAA--- 1608 consensus_13924#3 ------------------------------------------------------------ consensus_13924#1 ATCATAAATCGCAGCGTTTAGTTATTAAGTAAGCGGCAGGGACAGATTTAATTAATTGCT 712 consensus_13924#2 ------------------------------------------------------------ consensus_13924#0 ------------------------------------------------------------ consensus_13924#3 ------------------------------------------------------------ consensus_13924#1 ACTTCGTACAAGTATTTTGCCACCGGTTTGATTTTACCCAAGCGTCGTGGTAAATAAAAA 772 consensus_13924#2 ------------------------------------------------------------ consensus_13924#0 ------------------------------------------------------------ consensus_13924#3 ------------------------------------------------------------ consensus_13924#1 TAGTGGCGCTGTCATTTTCGTCAAAATAAAAGAGATTTGTGTAGCTGTTTTGGCAAAATA 832 consensus_13924#2 ------------------------------------------------------------ consensus_13924#0 ------------------------------------------------------------ consensus_13924#3 ------------------------------------------------------------ consensus_13924#1 AAATTTAGCGTATACGGGCCCTCCTTTAAAGTATTGATCGTGAGCTGATACCGAACCCAA 892 consensus_13924#2 ------------------------------------------------------------ consensus_13924#0 ---------------------------------------- consensus_13924#3 ---------------------------------------- consensus_13924#1 TTGCTGATTTCGCCTGTAGCCGCCGCGGTCACTGTGTCCG 932 consensus_13924#2 ---------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||