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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13924#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1608 fasta sequence
[AAGACCAAAGCTATCGAGAGATCGATCACTGCACGCCAGCTGCTCGGAGAAAAGGCGAGAAGAAAATAGTGAGCTCGCAGCTAGCTAAGTTAGCTTGCTTAGCCATGGGCGAGGAAGCCGCGGCGGCCACGGTGACGGCGGCGGCGGCGGCGGCGGCGAGCGGCGGCGCGCCGCACCTGCTCCTCATCTGCTTCCCCGGGCAGGGCCACGTCAACCCGATGCTCCGGCTCGCCAAGCGCATCGCGGCGAAGGGCCTCGTCGTGACGTTCTCGTCGACGTCCGCCATCGGCGCCAAGCTCGTGGAGTCGTCCGGCGTGTCGGTCGGCGGCGACGGCGTGCCGCTCGGCGGCGGCCGGATCAGGTTCGAGTTCTTGGAGGATGGCTTCGACGGGAGCGACCTCGACGAGCTGATGCGGCACCTCGGGACGGCCGGGCCGGCGGCGTTCGCCGAGCTGCTCGCGCGGCAGGAGGCGGCGGGGCGGCCGGTGGCGTGCGTCGTCGGGAACCCGTTCATCCCGTGGGCGGTCGACGTCGCC-GCCGCCGCCGGCATCCTGTCGGCCGTGCTGTGGGTGCAGTCGTGCGCCGTGTTCTCGCTCTACTACCACCGCGTCCACGGCCTCGTCGAGTTCCCCCCCGAGGACGACCTCGACGCGCGGCTCACGCTGCCGGGGCTCCCGGCGATGTCGGTCGCCGACGTGCCGTCCTTCCTCCTCCCGTCGAACCCCTACATGAGCCTCACGGAGGCGATACAGCAGCAGATCCGCACCATCGACAAGGCGACGTGGGTGTTCGTCAACTCCTTCACCGAGCTGGAGCGCGACGTGGTGGACGCGCTCCGCGGCGTCGCGACGTCGCCGCCGCCGCCGCCGCTCATCCCCGTCGGCCCGCTGATCGAGCTGGAGGGCGACGCCGCGGTGCGCGGCGACATGATCAGGGCAGCGGACGACTGCGTCGGGTGGCTGGACGAACACCCTCCGCGCTCCGTCGTGTACGCGTCGCTCGGCAGCGTCGTGGTGCTGTCCGCCGGCGAGGTGGCGGAGATGGCGCACGGGCTCGCCTCCACCGGCCGGCCGTTCCTCTGGGTGGTGCGGCCGGACAGCCGCGCGCTGCTGCCGGAGGGGTTCCTCGACGCCGTCGCCGGCCGCGGCATGGTGGTGCCATGGAGCCCCCAGGAGCAAGTGCTCGTCCACCCCGCCGTGGCGTGCTTCCTCACGCACTGCGGCTGGAACTCGACGCTGGAGACGGTCGCCGCCGGCGTGCCGGTGGTGGCGTTCCCGCAGTGGGGGGACCAGTGCACCGACGCCATGTTCCTCGTCGACGAGCTCGGGATGGGCGTCCGCCACGTGGAGGCGTTCGTGGAGGAGGTGAAGGCGCGAGCGGCTAAGGCGTGACGTCACGCATGGAATCATAAATCGCAGCGTTTAGTTATTAAGTAAGCGGCAGGGACAGATTTAATTAATTGCTAC-TTCGTACAAGTATTTTGCCACCGGTTTGATTTTACCCAAGCGTCGT-GGTAAATAAAAATAGTGGCGCTGTCATTTTC-GTCAAAATTTTGTTTGATTTGTGTAGC-TGTTTTGGCAAAATAAAATTTAACGTATACGGACAAAA]
[+] EMBL AK105236 [AAGACCAAAGCTATCGAGAGATCGATCACTGCACGCCAGCTGCTCGGAGAAAAGGCGAGAAGAAAATAGTGAGCTCGCAGCTAGCTAAGTTAGCTTGCTTAGCCATGGGCGAGGAAGCCGCGGCGGCCACGGTGACGGCGGCGGCGGCGGCGGCGGCGAGCGGCGGCGCGCCGCACCTGCTCCTCATCTGCTTCCCCGGGCAGGGCCACGTCAACCCGATGCTCCGGCTCGCCAAGCGCATCGCGGCGAAGGGCCTCGTCGTGACGTTCTCGTCGACGTCCGCCATCGGCGCCAAGCTCGTGGAGTCGTCCGGCGTGTCGGTCGGCGGCGACGGCGTGCCGCTCGGCGGCGGCCGGATCAGGTTCGAGTTCTTGGAGGATGGCTTCGACGGGAGCGACCTCGACGAGCTGATGCGGCACCTCGGGACGGCCGGGCCGGCGGCGTTCGCCGAGCTGCTCGCGCGGCAGGAGGCGGCGGGGCGGCCGGTGGCGTGCGTCGTCGGGAACCCGTTCATCCCGTGGGCGGTCGACGTCGCC GCCGCCGCCGGCATCCTGTCGGCCGTGCTGTGGGTGCAGTCGTGCGCCGTGTTCTCGCTCTACTACCACCGCGTCCACGGCCTCGTCGAGTTCCCCCCCGAGGACGACCTCGACGCGCGGCTCACGCTGCCGGGGCTCCCGGCGATGTCGGTCGCCGACGTGCCGTCCTTCCTCCTCCCGTCGAACCCCTACATGAGCCTCACGGAGGCGATACAGCAGCAGATCCGCACCATCGACAAGGCGACGTGGGTGTTCGTCAACTCCTTCACCGAGCTGGAGCGCGACGTGGTGGACGCGCTCCGCGGCGTCGCGACGTCGCCGCCGCCGCCGCCGCTCATCCCCGTCGGCCCGCTGATCGAGCTGGAGGGCGACGCCGCGGTGCGCGGCGACATGATCAGGGCAGCGGACGACTGCGTCGGGTGGCTGGACGAACACCCTCCGCGCTCCGTCGTGTACGCGTCGCTCGGCAGCGTCGTGGTGCTGTCCGCCGGCGAGGTGGCGGAGATGGCGCACGGGCTCGCCTCCACCGGCCGGCCGTTCCTCTGGGTGGTGCGGCCGGACAGCCGCGCGCTGCTGCCGGAGGGGTTCCTCGACGCCGTCGCCGGCCGCGGCATGGTGGTGCCATGGAGCCCCCAGGAGCAAGTGCTCGTCCACCCCGCCGTGGCGTGCTTCCTCACGCACTGCGGCTGGAACTCGACGCTGGAGACGGTCGCCGCCGGCGTGCCGGTGGTGGCGTTCCCGCAGTGGGGGGACCAGTGCACCGACGCCATGTTCCTCGTCGACGAGCTCGGGATGGGCGTCCGCCACGTGGAGGCGTTCGTGGAGGAGGTGAAGGCGCGAGCGGCTAAGGCGTGACGTCACGCATGGAATCATAAATCGCAGCGTTTAGTTATTAAGTAAGCGGCAGGGACAGATTTAATTAATTGCTAC TTCGTACAAGTATTTTGCCACCGGTTTGATTTTACCCAAGCGTCGT GGTAAATAAAAATAGTGGCGCTGTCATTTTC GTCAAAATTTTGTTTGATTTGTGTAGC TGTTTTGGCAAAATAAAATTTAACGT ]
[+] EMBL CB624108 [ AGAGATCGATCACTGCACGCCAGCTGCTCGGAGAAAAGGCGAGAAGAAAATAGTGAGCTCGCAGCTAGCTAAGCTAGCTTGCTTAGCCATGGGCGAGGAAGCCGCGGCGGCCACGGTGACGGCGGCGGCGGCGGCGGCGGCGAGCGGCGGCGCGCCGCACCTGCTCCTCATCTGCTTCCCCGGGCAGGGCCACGTCAACCCGATGCTCCGGCTCGCCAAGCGCATCGCGGCGAAGGGCCTCGTCGTGACGTTCTCGTCGACGTCCGCCATCGGCGCCAAGCTCGTGGAGTCGTCCGGCGTGTCGGTCGGCGGCGACGGCGTGCCGCTCGGCGGCGGCCGGATCAGGTTCGAGTTCTTGGAGGATGGCTTCGACGGGAGCGACCTCGACGAGCTGATGCGGCACCTCGGGACGGCCGGGCCGGCGGCGTTCGCCGAGCTGCTCGCGCGGCAGGAGGCGGCGGGGCGGCCGGTGGCGTGCGTCGTCGGGAACCCGTTCATCCCGTGGGCGGTCGACGTTGCCTGCCGCCGCCGGCATCCCGTCTGCCGTGCTGTGGGT ]
[+] EMBL AU067948 [ GAGATCGATCACTGCACGCCAGCTGCTCGGAGAAAAGGCGAGAAGAAAATAGTGAGCTCGCAGCTAGCTAAGTTAGCTTGCTTAGCCATGGGCGAGGAAGCCGCGNCGGCCACGGTGACGGCGGCGGCGGCGGCGGCGNNGAGCGNCGGCGCGCCGANCCTGCTCCTCATCTGCTTCCCCGGGCAGGGCCACGTCAACCCGATGCTCCGGCTCGNCAAGCGCATCG GGCGAAGGGCCTNGTCGTGACGTTCTCGTCGACGTCCGTCATCGG GNCAAGCTCGTGGAGTCGTCCGGCGTGTCGGTC ]
[+] EMBL CB643540 [ TCGATCTCTGCACGCCAGCTGCTCGGAGAAAAGGCGAGAAGAAAATAGTGAGCTCGCAGCTAGCTAAGTTAGCTTGCTTAGCCATGGGCGAGGAAGCCGCGGCGGCCACGGTGACGGCGGCGGCGGCGGCGGCGGCGAGCGGCGGCGCGCCGCACCTGCTCCTCATCTGCTTCCCCGGGCAGGGCCACGTCAACCCGATGCTCCGGCTCGCCAAGCGCATCGCGGCGAAGGGCCTCGTCGTGACGTTCTCGTCGACGTCCGCCATCGGCGCCAAGCTCGTGGAGTCGTCCGGCGTGTCGGTCGGCGGCGACGGCGTGCCGCTCGGCGGCGGCCGGATCAGGTTCGAGTTCTTGGAGGATGGCTTCGACGGGAGCGACCTCGACGAGCTGATGCGGCACCTCGGGACGGCCGGGCCGGCGGCGTTCGCCGAGCTGCTCGCGCGGCAGGAGGCGGCGGGGCGGCCGGTGGCGTGCGTCGTCGGGAACCCGTTCATCCCGTGGGCGGCCGACCTGGAC CCCATCGCCGGGGTCCTGGGGGCCGCGCTGGGGGTGCAGACGGGCTCCGTGATCGCGCTCTA ]
[+] EMBL BI808840 [ AATCATAAATCGCAGCGTTTAGTTATTAAGTAAGCGGCAGGGACAGATTTAATTAATTGCTACATTCGTACAAGTATTTTGCCACCGGTTTGATGTTACCCAAGCGTCGTCGGTAAATAAACATAGTGGCGCTGTCATTTTCAGTCAAAATTTTGTTTGGTTTGTGTAGCATGTTTTGGCCAAATAAAATTTAACGTATACGGACAAAA]
consensusID : consensus_13924#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 932 fasta sequence
[GAGGGCGACGCCGCGGTGCGCGGCGACATGATCAGGGCAGCGGACGACTGCGTCGGGTGGCTGGACGAACACCCTCCGCGCTCCGTCGTGTACGCGTCGCTCGGCAGCGTCGTGGTGCTGTCCGCCGGCGAGGTGGCGGAGATGGCGCACGGGCTCGCCTCCACCGGCCGGCCGTTCCTCTGGGTGGTGCGGCCGGACAGCCGCACGCTGCTGCCGGAGGGGTTCCTCGACGCCGTCGCCGGCCGCGGCATGGTGGTGCCATGGAGCCCCCAGGAGCAAGTGCTCGTCCACCCCGCCGTGGCGTGCTTCCTCACGCACTGCGGCTGGAACTCGACGCTGGAGACGGTCGCCGCCGGCGTGCCGGTGGTGGCGTTCCCGCAGTGGGGGGACCAGTGCACCGACGCCATGTTCCTCGTCGACGAGCTCGGGATGGGCGTCCGCCTCCGCGCGCCGCTGCGGCGCGGCGCCGTGCGCGACGCCGTCGACGCCGCCGTGGCGGGGCCCGACGCCGGCGCGATGCGGTCCAGCGCCGCGGCGTGGAGCGCCGCCGCGCGGGCGGCCGTGGCGGCCGGCGGCTCGTCGGACCGCCACGTGGAGGCGTTCGTGGAGGAGGTGAAGGCGCGAGCGGCTAAGGCGTGACGTCACGCATGGAATCATAAATCGCAGCGTTTAGTTATTAAGTAAGCGGCAGGGACAGATTTAATTAATTGCTACTTCGTACAAGTATTTTGCCACCGGTTTGATTTTACCCAAGCGTCGTGGTAAATAAAAATAGTGGCGCTGTCATTTTCGTCAAAA--TAAAAGAGATTTGTGTAGCTGTTTTGGCAAAATAAAATTTAGCGTATACGGGCCCTCCTTTAAAGTATTGATCGTGAGCTGATACCGAACCCAATTGCTGATTTCGCCTGTAGCCGCCGCGGTCACTGTGTCCG]
[-] EMBL CB624109 [GAGGGCGACGCCGCGGTGCGCGGCGACATGATCAGGGCAGCGGACGACTGCGTCGGGTGGCTGGACGAACACCCTCCGCGCTCCGTCGTGTACGCGTCGCTCGGCAGCGTCGTGGTGCTGTCCGCCGGCGAGGTGGCGGAGATGGCGCACGGGCTCGCCTCCACCGGCCGGCCGTTCCTCTGGGTGGTGCGGCCGGACAGCCGCACGCTGCTGCCGGAGGGGTTCCTCGACGCCGTCGCCGGCCGCGGCATGGTGGTGCCATGGAGCCCCCAGGAGCAAGTGCTCGTCCACCCCGCCGTGGCGTGCTTCCTCACGCACTGCGGCTGGAACTCGACGCTGGAGACGGTCGCCGCCGGCGTGCCGGTGGTGGCGTTCCCGCAGTGGGGGGACCAGTGCACCGACGCCATGTTCCTCGTCGACGAGCTCGGGATGGGCGTCCGCCTCCGCGCGCCGCTGCGGCGCGGCGCCGTGCGCGACGCCGTCGACGCCGCCGTGGCGGGGCCCGACGCCGGCGCGATGCGGTCCAGCGCCGCGGCGTGGAGCGCCGCCGCGCGGGCGGCCGTGGCGGCCGGCGGCTCGTCGGACCGCCACGTGGAGGCGTTCGTGGAGGAGGTGAAGGCGCGAGCGGCTAAGGCGTGACGTCACGCATGGAATCATAAATCGCAGCGTTTAGTTATTAAGTAAGCGGCAGGGACAGATTTAATTAATTGCTACTTCGTACAAGTATTTTGCCACCGGTTTGATTTTACCCAAGCGTCGTGGTGAATAAAAATAGTGGCGCTGTCATTTTCGTCAAAA AAAAAGAGA ]
[-] EMBL CB624012 [ CGACATGATCAGGGCAGCGGACGACTGCGTCGGGTGGCTGGACGAACACCCTCCGCGCTCCGTCGTGTACGCGTCGCTCGGCAGCGTCGTGGTGCTGTCCGCCGGCGAGGTGGCGGAGATGGCGCACGGGCTCGCCTCCACCGGCCGGCCGTTCCTCTGGGTGGTGCGGCCGGACAGCCGCACGCTGCTGCCGGAGGGGTTCCTCGACGCCGTCGCCGGCCGCGGCATGGTGGTGCCATGGAGCCCCCAGGAGCAAGTGCTCGTCCACCCCGCCGTGGCGTGCTTCCTCACGCACTGCGGCTGGAACTCGACGCTGGAGACGGTCGCCGCCGGCGTGCCGGTGGTGGCGTTCCCGCAGTGGGGGGACCAGTGCACCGACGCCATGTTCCTCGTCGACGAGCTCGGGATGGGCGTCCGCCTCCGCGCGCCGCTGCGGCGCGGCGCCGTGCGCGACGCCGTCGACGCCGCCGTGGCGGGGCCCGACGCCGGCGCGATGCGGTCCAGCGCCGCGGCGTGGAGCGCCGCCGCGCGGGCGGCCGTGGCGGCCGGCGGCTCGTCGGACCGCCACGTGGAGGCGTTCGTGGAGGAGGTGAAGGCGCGAGCGGCTAAGGCGTGACGTCACGCATGGAATCATAAATCGCAGCGTTTAGTTATTAAGTAAGCGGCAGGGACAGATTTAATTAATTGCTACTTCGTACAAGTATTTTGCCACCGGTTTGATTTTACCCAAGCGTCGTGGGGAATAAAAATAGTGGCGCTGTCATTTTCGTCAAAA AAAAAGGGA ]
[-] EMBL CB671580 [ GTCGTGGTGCTGTCCGCCGGGGAGGTGGCGGAGATGGCGCACGGGCTCGCCTCCACCGGCCGGCCGTTCCTCTGGGTGGTGCGGCCGGACAGCCGCGCGCTGCTGCCGGAGGGGTTCCTCGACGCCGTCGCCGGCCGCGGCATGGTGGTGCCATGGAGCCCCCAGGAGCAAGTGCTCGTCCACCCCGCCGTGGCGTGCTTCCTCACGCACTGCGGCTGGAACTCGACGCTGGAGACGGTCGCCGCCGGCGTGCCGGTGGTGGCGTTCCCGCAGTGGGGGGACCAGTGCACCGACGCCATGTTCCTCGTCGACGAGCTCGGGATGGGCGTCCGCCTCCGCGCGCCGCTGCGGCGCGGCGCCGTGCGCGACGCCGTCGACGCCGCCGTGGCGGGGCCCGACGCCGGCGCGATGCGGTCCAGCGCCGCAGCGTGGAGCGCCGCCGCGCGGGCGGCCGTGGCGGCCGGCGGCTCGTCGGACCGCCACGTGGAGGCGTTCGTGGAGGAGGTGAAGGCGCGAGCGGCTAAGGCGTGACGTCACGCATGGAATCATAAATCGCAGCGTTTAGTTATTAAGTAAGCGGCAGGGACAGATTTAATTAATTGCTACTTCGTACAAGTATTTTGCCACCGGTTTGATTTTACCCAAGCGTCGTAGGAAATAAAAATAGTGGCGCTGT ]
[-] EMBL CB646316 [ GCCGGACAGCCGCGCGCTGCTGCCGGAGGGGTTCCTCGACGCCGTCGCCGGCCGCGGCATGGTGGTGCCATGGAGCCCCCAGGAGCAAGTGCTCGTCCACCCCGCCGTGGCGTGCTTCCTCACGCACTGCGGCTGGAACTCGACGCTGGAGACGGTCGCCGCCGGCGTGCCGGTGGTGGCGTTCCCGCAGTGGGGGGACCAGTGCACCGACGCCATGTTCCTCGTCGACGAGCTCGGGATGGGCGTCCGCCTCCGCGCGCCGTTGCGGCGCGGCGCCGTGCGCGACGCCGTCGACGCCGCCGTGGCGGGGCCCGACGCCGGCGCGATGCGGTCCAGCGCCGCAGCGTGGAGCGCCGCCGCGCGGGCGGCCGTGGCGGCCGGCGGCTCGTCGGACCGCCACGTGGAGGCGTTCGTGGAGGAGGTGAAGGCGCGAGCGGCTAAGGCGTGACGTCACGCATGGAATCATAAATCGCAGCGTTTAGTTATTAAGTAAGCGGCAGGGACAGATTTAATTAATTGCTACTTCGTACAAGTATTTTGCCACGGGGTTGATTTTACCCAAGCGTCGTGGTAAATAAAAATAGTGGCGCTGTCATTTTCNTCAAAA Ttttgttt ]
[-] EMBL CB622751 [ CTCGACGCAGTCGCCGGCCGCGGCATGGTGGTGCCATGGAGCCCCCAGGAGCAAGTGTTCGTCCACCCCGCCGTGGCGTGATTCCTCACGCTGTGCGGATGGAACTCGACGCTGGAGTCGGTCGCCGCCGGCGTGCCGGTGGTGGCGTTCCCGCAGTGGGGGGACCAGTGCACGGACGCCATGTTCCTCGTCGACGAGCTTGGGATGGGCGTCCGCATCCGCGCGCCGATGCGGCGCGGCGCCGTGCGTGACGCCGTAGACGCCGCCGTGGCGGGGCCCGACGCCGGCGCGATGCGGTCCAGCGCCGCGGCGTGGAGCGCCGCCGCGCGGGCGGCCGTGGCGGCCGGCGGCTCGTCGGACCGCCACGTGGAGGCGTTCGTGGAGGAGGTGAAGGCGCGAGCGGCTAAGGCGTGACGTCACGCATGGAATCATAAATCGCAGCGTTTAGTTATTAAGTAAGCGGCAGGGACAGATTTAATTAATTGCTACTTCGTACAAGTATTTTGCCACCGGTTTGATTTTACCCAAGCGTCGTAGTAAATAAAAATAGTGGCGCTGTCATTTTCGTCAAAA TAAAAGAGA ]
[-] EMBL CB643541 [ GGGGGCCCAGTGCACCGACGCCATGTTCCTCGTCGACGAGCTCGGGATGGGCGTCCGCCTCCGCGCGCCGCTGCGGCGCGGCGCCGTGCGCGACGCCGTCGTCGCCGCCGTGGCGGGGCCCGACGCCGGCGCGATGCGGTCCAGCGCCGCAGCGTGGAGCGCCGCCGCGCGGGCGGCCGTGGCGGCCGGCGGCTCGTCGGACCGCCCCGTGGAGGCGTTCGTGGAGGAGGTGAAGGCGCGAGCGGCTAAGGCGTGACGTCACGCATGGAATCATAAATCGCAGCGTTTAGTTATTTAGTAAGCGGCAGGGACCGATTTAATTAATTGCTACTTCGTCCAAGTATTTTGCCCCCGGTTTGATTTTACCCAAGCGTCGTGGTAAATAAAAATAGTGGCGCTGTCATTTTCGTCAAAATTTTGTTCTGATTTGTGTAGCTGTTTTGGCAAAATAAAATTTAGCGTATACGGGCCCTCCTTTAAAGTATTGATCGTGAGCTGATACCGAACCCAATTGCTGATTTCGCCTGTAGCCGCCGCGGTCACTGTGTCCG]
consensusID : consensus_13924#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 563 fasta sequence
[CCCNNANTTTTTTTTTTTTTTTTTGGGGGGGGGGGGGGGNTTNAAAAAAANANAAANACNCGNGNNNNCCCCCNNNTTGTTTAANCCCCCNCCTTGGGNAAAAAANGGGGGTTNCCCCCCGGGGGGGGNCNGTTTTNGGAAAAAAAGAANTCCCCCNGGGGCCNGGAATTTNGCCANGAGNGGGGGGGAAGGGGTCCCAGCNCCNCCAGCGTGGNGCGCCCCCCGCGCGGGCGGCCGTGGCGGCCGGCGGTTTGTNGGACCGCCAACGTGGAGGCGTTTNGTGGAGGAGGTGAAGGCGCGAGCGGCTAAGGCGTGACGTCACGCATGGAATCATAAATCGCAGCGTTTAGTTATTAAGTAAGCGGCAGGGACAGATTTAATTAATTGCTACTTCGTACAAGTATTTTGCCACCGGTTTGATTTTACCCAAGCGTCGTGGTAAATAAAAATAGTGGCGCTGTCATTTTCGTCAAAATTTTGTTTGATTTGTGTAGCTGTTTTGGCAAAATAAAATTTAACGTATACGGACACACATTTAAAGTATTAAACGTNANANAAAAANA]
[+] EMBL AA753943 [CCCNNANTTTTTTTTTTTTTTTTTGGGGGGGGGGGGGGGNTTNAAAAAAANANAAANACNCGNGNNNNCCCCCNNNTTGTTTAANCCCCCNCCTTGGGNAAAAAANGGGGGTTNCCCCCCGGGGGGGGNCNGTTTTNGGAAAAAAAGAANTCCCCCNGGGGCCNGGAATTTNGCCANGAGNGGGGGGGAAGGGGTCCCAGCNCCNCCAGCGTGGNGCGCCCCCCGCGCGGGCGGCCGTGGCGGCCGGCGGTTTGTNGGACCGCCAACGTGGAGGCGTTTNGTGGAGGAGGTGAAGGCGCGAGCGGCTAAGGCGTGACGTCACGCATGGAATCATAAATCGCAGCGTTTAGTTATTAAGTAAGCGGCAGGGACAGATTTAATTAATTGCTACTTCGTACAAGTATTTTGCCACCGGTTTGATTTTACCCAAGCGTCGTGGTAAATAAAAATAGTGGCGCTGTCATTTTCGTCAAAATTTTGTTTGATTTGTGTAGCTGTTTTGGCAAAATAAAATTTAACGTATACGGACACACATTTAAAGTATTAAACGTNANANAAAAANA]
[+] EMBL BI807589 [ GGCGGCCGGCGGCTCGTCGGACCGCC ACGTGGAGGCG TTCTTGGAGGAGGTGAAGGCGCGA C GCTAAGGCGTGACGTCACGCATGGAATCATAAATCGCAGCGTTTAGTTATTAAGTAAGCGGCAGGGACAGATTTAATTAATTGCTACTTCGTACAAGTATTTTGCCACCGGTTTGATTTTACCCAAGCGTCGTGGTAAATAAAAATAGTGGCGCTGTCATTTTCGTCAAAATTTTGTTTGGTTTGTGTAGCTGTTTTGGCAAAATAAAATTTAACGTATAaaaaaaaaa ]
consensusID : consensus_13924#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 323 fasta sequence
[GAGAGATCGATCACTGCACGCCAGCTGCTCGGAGAAAAGGCGAGAAGAAAATAGTGAGCTCGNAGNTAGCTAAGTTAGCTTGCTTAGCCATGGGCGAGGAAGCCGCCGCCGCTCATCCCCGTCGGCCCGCTGATCGAGCTGGAGGGCGACGCGCGGTGCGCGCANCGATNGATCAGGGCAGCGGACGACTGCGTCGNGTTGGCTGGACGAACACCCTCCGCGCTCCGTCGTGTACGCGTCGCTCNGGCAGNGTCGTGGTGCTGTCCGCCGGCGAGGTGGCGGAGATGNCGCACGTGCTCGCCTCCAACGGNCGGCCGTTCCTC]
[+] EMBL AU069652 [GAGAGATCGATCACTGCACGCCAGCTGCTCGGAGAAAAGGCGAGAAGAAAATAGTGAGCTCGNAGNTAGCTAAGTTAGCTTGCTTAGCCATGGGCGAGGAAGCCGCCGCCGCTCATCCCCGTCGGCCCGCTGATCGAGCTGGAGGGCGACGCGCGGTGCGCGCANCGATNGATCAGGGCAGCGGACGACTGCGTCGNGTTGGCTGGACGAACACCCTCCGCGCTCCGTCGTGTACGCGTCGCTCNGGCAGNGTCGTGGTGCTGTCCGCCGGCGAGGTGGCGGAGATGNCGCACGTGCTCGCCTCCAACGGNCGGCCGTTCCTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13924#0 AAGACCAAAGCTATCGAGAGATCGATCACTGCACGCCAGCTGCTCGGAGAAAAGGCGAGA 60
consensus_13924#3 ------------------------------------------------------------
consensus_13924#1 ------------------------------------------------------------
consensus_13924#2 ------------------------------------------------------------
consensus_13924#0 AGAAAATAGTGAGCTCGCAGCTAGCTAAGTTAGCTTGCTTAGCCATGGGCGAGGAAGCCG 120
consensus_13924#3 ------------------------------------------------------------
consensus_13924#1 ------------------------------------------------------------
consensus_13924#2 ------------------------------------------------------------
consensus_13924#0 CGGCGGCCACGGTGACGGCGGCGGCGGCGGCGGCGGCGAGCGGCGGCGCGCCGCACCTGC 180
consensus_13924#3 ------------------------------------------------------------
consensus_13924#1 ------------------------------------------------------------
consensus_13924#2 ------------------------------------------------------------
consensus_13924#0 TCCTCATCTGCTTCCCCGGGCAGGGCCACGTCAACCCGATGCTCCGGCTCGCCAAGCGCA 240
consensus_13924#3 ------------------------------------------------------------
consensus_13924#1 ------------------------------------------------------------
consensus_13924#2 ------------------------------------------------------------
consensus_13924#0 TCGCGGCGAAGGGCCTCGTCGTGACGTTCTCGTCGACGTCCGCCATCGGCGCCAAGCTCG 300
consensus_13924#3 ------------------------------------------------------------
consensus_13924#1 ------------------------------------------------------------
consensus_13924#2 ------------------------------------------------------------
consensus_13924#0 TGGAGTCGTCCGGCGTGTCGGTCGGCGGCGACGGCGTGCCGCTCGGCGGCGGCCGGATCA 360
consensus_13924#3 ------------------------------------------------------------
consensus_13924#1 ------------------------------------------------------------
consensus_13924#2 ------------------------------------------------------------
consensus_13924#0 GGTTCGAGTTCTTGGAGGATGGCTTCGACGGGAGCGACCTCGACGAGCTGATGCGGCACC 420
consensus_13924#3 ------------------------------------------------------------
consensus_13924#1 ------------------------------------------------------------
consensus_13924#2 ------------------------------------------------------------
consensus_13924#0 TCGGGACGGCCGGGCCGGCGGCGTTCGCCGAGCTGCTCGCGCGGCAGGAGGCGGCGGGGC 480
consensus_13924#3 ------------------------------------------------------------
consensus_13924#1 ------------------------------------------------------------
consensus_13924#2 ------------------------------------------------------------
consensus_13924#0 GGCCGGTGGCGTGCGTCGTCGGGAACCCGTTCATCCCGTGGGCGGTCGACGTCGCCGCCG 540
consensus_13924#3 ------------------------------------------------------------
consensus_13924#1 ------------------------------------------------------------
consensus_13924#2 ------------------------------------------------------------
consensus_13924#0 CCGCCGGCATCCTGTCGGCCGTGCTGTGGGTGCAGTCGTGCGCCGTGTTCTCGCTCTACT 600
consensus_13924#3 ------------------------------------------------------------
consensus_13924#1 ------------------------------------------------------------
consensus_13924#2 ------------------------------------------------------------
consensus_13924#0 ACCACCGCGTCCACGGCCTCGTCGAGTTCCCCCCCGAGGACGACCTCGACGCGCGGCTCA 660
consensus_13924#3 ------------------------------------------------------------
consensus_13924#1 ------------------------------------------------------------
consensus_13924#2 ------------------------------------------------------------
consensus_13924#0 CGCTGCCGGGGCTCCCGGCGATGTCGGTCGCCGACGTGCCGTCCTTCCTCCTCCCGTCGA 720
consensus_13924#3 ------------------------------------------------------------
consensus_13924#1 ------------------------------------------------------------
consensus_13924#2 ------------------------------------------------------------
consensus_13924#0 ACCCCTACATGAGCCTCACGGAGGCGATACAGCAGCAGATCCGCACCATCGACAAGGCGA 780
consensus_13924#3 -------------------------GAGAGATCGATCACTGCACGCCAGCTGCTCGGAGA 35
consensus_13924#1 ------------------------------------------------------------
consensus_13924#2 -------------------------------CCCNNANTTTTTTTTTTTTTTTTTGGGGG 29
consensus_13924#0 CGTGGGTGTTCGTCAACTCCTTCACCGAGCTGGAGCGCGACGTGGTGGACGCGCTCCGCG 840
consensus_13924#3 AAAGGCGAGAAGAAAAT------AGTGAGCTCGNAGNTAGCTAAGTTAGCTTGCTTAGCC 89
consensus_13924#1 ------------------------------------------------------------
consensus_13924#2 GGGGGGGGGGNTTNAA-------AAAAANANAAANACNCGNGNNNNCCCCCNNNTTGTTT 82
consensus_13924#0 GCGTCGCGACGTCGCCGCCGCCGCCGCCGCTCATCCCCGTCGGCCCGCTGATCGAGCTGG 900
consensus_13924#3 ATG-------GGCGAGGAAGCCGCCGCCGCTCATCCCCGTCGGCCCGCTGATCGAGCTGG 142
consensus_13924#1 -----------------------------------------------------------G 1
consensus_13924#2 AANCCCCCNCCTTGGGNAAAAAANGGGGGTTNCCCCCCGGGGGGGGNCNGTTTTNGGAAA 142
consensus_13924#0 AGGGCGACGC-CGCGGTGCGCGGCGACATGATCAGGGCAGCGGACGACTGCGTC--GGGT 957
consensus_13924#3 AGGGCGACGCGCGGTGCGCGCANCGATN-GATCAGGGCAGCGGACGACTGCGTC--GNGT 199
consensus_13924#1 AGGGCGACGC-CGCGGTGCGCGGCGACATGATCAGGGCAGCGGACGACTGCGTC--GGGT 58
consensus_13924#2 AAAAGAANTCCCCCNGGGGCCNGGAATTTNGCCANGAGNGGGGGGGAAGGGGTCCCAGCN 202
* * * * * * * * ** * * ** ** * ***
consensus_13924#0 -GGCTGGACGAACACCCTCCGCGCTCCGTCGTGTACGCGTCGCTCGG-CAGCGTCGTGGT 1015
consensus_13924#3 TGGCTGGACGAACACCCTCCGCGCTCCGTCGTGTACGCGTCGCTCNGGCAGNGTCGTGGT 259
consensus_13924#1 -GGCTGGACGAACACCCTCCGCGCTCCGTCGTGTACGCGTCGCTCGG-CAGCGTCGTGGT 116
consensus_13924#2 CCNCCAGCGTGGNGCGCCCCCCGCGCGG--GCGGCCGTGGCGGCCGG-CGGT-TTGTNGG 258
* * * * ** *** * * * * ** * ** * * * * * ** *
consensus_13924#0 GCTGTCCGC-CGGCGAGGT--GGCGGAGATGGCGCACGGGCTCGCCTCCACCGGCCGGCC 1072
consensus_13924#3 GCTGTCCGC-CGGCGAGGT--GGCGGAGATGNCGCACGTGCTCGCCTCCAACGGNCGGCC 316
consensus_13924#1 GCTGTCCGC-CGGCGAGGT--GGCGGAGATGGCGCACGGGCTCGCCTCCACCGGCCGGCC 173
consensus_13924#2 ACCGCCAACGTGGAGGCGTTTNGTGGAGGAGGTGAAGGCGCGAGCGGCTAAGGCGTGACG 318
* * * * ** * ** * **** * * * * ** ** * * * * *
consensus_13924#0 GTTCCTCTGGGTGGTGCGGCCGGACAGCCGCGCGCTGCTGCCGGAGGGGTTCCTCGACGC 1132
consensus_13924#3 GTTCCTC----------------------------------------------------- 323
consensus_13924#1 GTTCCTCTGGGTGGTGCGGCCGGACAGCCGCACGCTGCTGCCGGAGGGGTTCCTCGACGC 233
consensus_13924#2 TCACGCATGGAATCATAAATCGCAGCGTTTAGTTATTAAGTAAGCGGCAGGGACAGATTT 378
*
consensus_13924#0 CGTCGCCGGCCGCGGCATGGTGGTGCCATGGAGCCCCCAGGAGCAAGTGCTCGT-CCACC 1191
consensus_13924#3 ------------------------------------------------------------
consensus_13924#1 CGTCGCCGGCCGCGGCATGGTGGTGCCATGGAGCCCCCAGGAGCAAGTGCTCGT-CCACC 292
consensus_13924#2 AATTAATTGCTACTTCGTACAAGTATTTTGCCACCGGTTTGATTTTACCCAAGCGTCGTG 438
consensus_13924#0 CCGCCGTGGCGTGCTTCCTCACGCACTGCGGCTGGAACTCGACGCTGGAGACGGTCGCCG 1251
consensus_13924#3 ------------------------------------------------------------
consensus_13924#1 CCGCCGTGGCGTGCTTCCTCACGCACTGCGGCTGGAACTCGACGCTGGAGACGGTCGCCG 352
consensus_13924#2 GTAAATAAAAATAGTGGCGCTGTCATTTTCGTCAAAATTTTGTTT----GATTTGTGTAG 494
consensus_13924#0 CCGGCGTGCCGGTGGTGGCGTTCCCGCAGTGGGGGGACCAGTGCACCGACGCCATGTTCC 1311
consensus_13924#3 ------------------------------------------------------------
consensus_13924#1 CCGGCGTGCCGGTGGTGGCGTTCCCGCAGTGGGGGGACCAGTGCACCGACGCCATGTTCC 412
consensus_13924#2 CTGTTTTGGCAAAATAAAATTTAACGTATACGGACACACATTTAAAGTATTAAACGTNAN 554
consensus_13924#0 TCGTCGACGAGCTCGGGATGGGCGTCCGCCACGTGGAGGCGTTCGTGGAGGAGGTGAAGG 1371
consensus_13924#3 ------------------------------------------------------------
consensus_13924#1 TCGTCGACGAGCTCGGGATGGGCGTCCGCCTCCGCGCGCCGCTGCGGCGCGGCGCCGTGC 472
consensus_13924#2 ANAAAAANA--------------------------------------------------- 563
consensus_13924#0 CGCGAGCGGCTAAGGCGTGACGTCACGCATGGAATCATAAATCGCAGCGTTTAGTTATTA 1431
consensus_13924#3 ------------------------------------------------------------
consensus_13924#1 GCGACGCCGTCGACGCCGCCGTGGCGGGGCCCGACGCCGGCGCGATGCGGTCCAGCGCCG 532
consensus_13924#2 ------------------------------------------------------------
consensus_13924#0 AGTAAGCGGCAGGGACAGATTTAATTAATTGCTACTTCGTACAAGTATTTTGCCACCGGT 1491
consensus_13924#3 ------------------------------------------------------------
consensus_13924#1 CGGCGTGGAGCGCCGCCGCGCGGGCGGCCGTGGCGGCCGGCGGCTCGTCGGACCGCCACG 592
consensus_13924#2 ------------------------------------------------------------
consensus_13924#0 TTGATTTTACCCAAGCGTCGTGGTAAATAAAAATAGTGGCGCTGTCATTTTCGTCAAAAT 1551
consensus_13924#3 ------------------------------------------------------------
consensus_13924#1 TGGAGGCGTTCGTGGAGGAGGTGAAGGCGCGAGCGGCTAAGGCGTGACGTCACGCATGGA 652
consensus_13924#2 ------------------------------------------------------------
consensus_13924#0 TTTGTTTGATTTGTGTAGCTGTTTTGGCAAAATAAAATTTAACGTATACGGACAAAA--- 1608
consensus_13924#3 ------------------------------------------------------------
consensus_13924#1 ATCATAAATCGCAGCGTTTAGTTATTAAGTAAGCGGCAGGGACAGATTTAATTAATTGCT 712
consensus_13924#2 ------------------------------------------------------------
consensus_13924#0 ------------------------------------------------------------
consensus_13924#3 ------------------------------------------------------------
consensus_13924#1 ACTTCGTACAAGTATTTTGCCACCGGTTTGATTTTACCCAAGCGTCGTGGTAAATAAAAA 772
consensus_13924#2 ------------------------------------------------------------
consensus_13924#0 ------------------------------------------------------------
consensus_13924#3 ------------------------------------------------------------
consensus_13924#1 TAGTGGCGCTGTCATTTTCGTCAAAATAAAAGAGATTTGTGTAGCTGTTTTGGCAAAATA 832
consensus_13924#2 ------------------------------------------------------------
consensus_13924#0 ------------------------------------------------------------
consensus_13924#3 ------------------------------------------------------------
consensus_13924#1 AAATTTAGCGTATACGGGCCCTCCTTTAAAGTATTGATCGTGAGCTGATACCGAACCCAA 892
consensus_13924#2 ------------------------------------------------------------
consensus_13924#0 ----------------------------------------
consensus_13924#3 ----------------------------------------
consensus_13924#1 TTGCTGATTTCGCCTGTAGCCGCCGCGGTCACTGTGTCCG 932
consensus_13924#2 ----------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||