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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13926#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 951 fasta sequence
[TTTTTTTTCCAATGATTACATTTATACAGGAGATGATAATAATAACATGAGTAATAAGAGTAGAGGCTGAAAATTTGGGAGAATATATGTGCCAAACTGCTCAATTAAGCTAGCTATGAGATCTGAATTTGATAGCAGTGCCAACTGCCCATGCA-TATATAATACTAGTAGAAAACAGTAATAATTTAAAACAGTCTTGGTTTATGCATGGTTTGATGTGCTGAACATCAAGGAAGCACCATGTAGAT-AGTAGAATTAATATGAGGTAGGATATATATGGAGGAGGGGAGAAGA-CAGGATGAG-CAAGAAAGAAGAAGATAGAGATTACAGAGGGCAGGGCA-GAC-GAACTGCAG-AAATGAA-GAAACTAAAGAAG-AAGT-AAAAATTAATCGGTGGTGATGTGTACTCCGATGACGATGACAAAGAGGGTGATGAGGGCGAAGTAGATGATGGAGTGGACGACGATGGACATGGCGCTGGTGTGCAGGTTGCCGAACTCGACGAAGTGGTGCCTCCCGGGGAGCTGGATGAGCAGCCCCGGCGAGAGCAGCACGAACAGCACCACCGCGATCACCACCGGCCCCCAGTCTGACATCCTTCCTAATTTCCTTTAATTAATGCTTGCTTTGCTTTCCTTCCTTAATCCTTCTTCCTCCTATTTCTTTCCCGATAGAGCTTCCTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTAGGAGCAGGAGGGTAGTAAGTAAGCGAGGCGAGCAGTAGTAGGAGCAGGTAAGGTAGGGTATGCAGATGCAAATGACTCACTCACTGTACTAGTATTGGCAACGTACGTACAGTACAGAGAGAATGAAAGAGAAAGAAGGTGAGGTGCGGTTCGTGGGAGTGGATGGATGGAAAGCACAGCAGAGAAGAGAANAGAAGCGCAGGTTATTAGGCTCGAATTCGACCGGTGCCTGCTCTACACT]
[-] EMBL AU056982 [TTTTTTTTCCAATGATTACATTTATACAGGAGATGATAATAATAACATGAGTAATAAGAGTAGAGGCTGAAAATTTGGGAGAATATATGTGCCAAACTGCTCAATTAAGCTAGCTATGAGATCTGAATTTGATAGCAGTGCCAACTGCCCATGCA TATATAATACTAGTAGAAAACAGTAATAATTTAAAACAGTCTTGGTTTATGCATGGTTTGATGTGCTGAACATCAAGGAAGCACCATGTAGAT AGTAGAATTAATATGAGGTAGGATATATATGGGGGAGGGGAGAAGA CAGGATGAG CAAGAAAGAAGAAGATAGAGGTTACAGAGGGCAGGGCA GAC GAACT ]
[-] EMBL AU056981 [ GANTATATGTGCCAAACTGCTCAATTAAGCTAGCTATGAGATCTGAATTTGATAGCAGTGCCAACTGCCCATGCATTATATAATACTAGTAGAAAACAGTAATAATTTAAAACAGTCTTGGTTTATGCATGGTTTGATGTGCTGAACATCAAGGAAGCACCATGTAGATAAGTAGAATTAATATGAGGTAGGATATATATGGAGGAGGGGAGAAGACCAGGATGAGCCAAGAAAGAAGAAGATAGAGATTACAGAGGGCAGGGCA GAC GAACTGCAG AAATGAA GAAACTAAAGAAG AAGT AAAAATTAATCGGTGGTGATGTGTACTCCGATGACGATGACAAAGAGGGTGATGAGGGCGAAGTAGATGATGGAGTGGACGACGATGGACATGGCGCTGGTGTGCAGGTTGCCGAACTCGACGAAGTGGTGCCTCCCGGGGAGCTGGATGAGCAGCCCCGGCGAGAGCAGCACGAACAGCACCACCGCGATCACCACCGGCCCCCAGTCTGACATCCTTCCTAATTTCCTTTAATTAATGCTTGCTTTGCTTTCCTTCCTTAATCCTTCTTCCTCCTATTTCTTTCCCGATAGAGCTTCCTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTAGGAGCAGG ]
[+] EMBL CB681779 [ TATATGTGCCAAACTGCTCCACTTAGCTAGCTATGAGATCTGAATTTGATAGCAGTGCCAACTGCCCATGCA TATATAATACTAGTAGAAAACAGTAATAATTTAAAACAGTCTTGGTTTATGCATGGTTTGATGTGCTGAACATCAAGGAAGCACCATGTAGAT AGTAGAATTAATATGAGGTAGGATATATATGGAGGAGGGGAGAAGA CAGGATGAG CAAGAAAGAAGAAGATAGAGATTACAGAGGGCAGGGCA GAC GAACTGCAG AAATGAA GAAACTAAAGAAG AAGT AAAAATTAATCGGTGGTGATGTGTACTCCGATGACGATGACAAAGAGGGTGATGAGGGCGAAGTAGATGATGGAGTGGACGACGATGGACATGGCGCTGGTGTGCAGGTTGCCGAACTCGACGAAGTGGTGCCTCCCGGGGAGCTGGATGAGCAGCCCCGGCGAGAGCAGCACGAACAGCACCACCGCGATCACCACCGGCCCCCAGTCTGACATCCTTCCTAATTTCCTTTAATTAATGCTTGCTTTGCTTTCCTTCCTTAATCCTTCTTCCTCCTATTTCTTTCCCGATAGAGCTTCCTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTAGGAGCAGGAGGGTAGTAAGTAAGCGAGGCGAGCAGTAGTAGGAGCAGGTAAGcctcgtgcc ]
[-] EMBL CB681778 [ TATGTGCCAAACTGCTCAATTAAGCTAGCTATGAGATCTGAATTTGATAGCAGTGCCAACTGCCCATGCA TATATAATACTAGTAGAAAACAGTAATAATTTAAAACAGTCTTGGTTTATGCATGGTTTGATGTGCTGAACATCAAGGAAGCACCATGTAGAT AGTAGAATTAATATGAGGTAGGATATATATGGAGGAGGGGAGAAGA CAGGATGAG CAAGAAAGAAGAAGATAGAGATTACAGAGGGCAGGGCA GAC GAACTGCAG AAATGAA GAAACTAAAGAAG AAGT AAAAATTAATCGGTGGTGATGTGTACTCCGATGACGATGACAAAGAGGGTGATGAGGGCGAAGTAGATGATGGAGTGGACGACGATGGACATGGCGCTGGTGTGCAGGTTGCCGAACTCGACGAAGTGGTGCCTCCCGGGGAGCTGGATGAGCAGCCCCGGCGAGAGCAGCACGAACAGCACCACCGCGATCACCACCGGCCCCCAGTCTGACATCCTTCCTAATTTCCTTTAATTAATGCTTGCTTTGCTTTCCTTCCTTAATCCTTCTTCCTCCTATTTCTTTCCCGATAGAGCTTCCTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTAGGAGCAGGAGGGTAGTAAGTAAGCGAGGCGAGCAGTAGGAGGA ]
[+] EMBL CF305381 [ ttttTGAATTTGATAGCAGTGCCAACTGCCCATGCA TATATAATACTAGTAGAAAACAGTAATAATTTAAAACAGTCTTGGTTTATGCATGGTTTGATGTGCTGAACATCAAGGAAGCACCATGTAGAT AGTAGAATTAATATGAGGTAGGATATATATGGAGGAGGGGAGAAGA CAGGATGAG CAAGAAAGAAGAAGATAGAGATTACAGAGGGCAGGGCA GAC GAACTGCAG AAATGAA GAAACTAAAGAAG AAGT AAAAATTAATCGGTGGTGATGTGTACTCCGATGACGATGACAAAGAGGGTGATGAGGGCGAAGTAGATGATGGAGTGGACGACGATGGACATGGCGCTGGTGTGCAGGTTGCCGAACTCGACGAAGTGGTGCCTCCCGGGGAGCTGGATGAGCAGCCCCGGCGAGAGCAGCACGAACAGCACCACCGCGATCACCACCGGCCCCCAGTCTGACATCCTTCCTAATTTCCTTTAATTAATGCTTGCTTTGCTTTCCTTCCTTAATCCTTCTTCCTCCTATTTCTTTCCCGATAGAGCTTCCTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTAGGAGCAGGAGGGTAGTAAGTAAGCGAGGCGAGCAGTAGTAGGAGCAGGTAAG ]
[+] EMBL BU673732 [ TTTGATAGCAGTGCCAACTGCCCATGCA TATATAATACTAGTAGAAAACAGTAATAATTTAAAACAGTCTTGGTTTATGCATGGTTTGATGTGCTGAACATCAAGGAAGCACCATGTAGAT AGTAGAATTAATATGAGGTAGGATATATATGGAGGAGGGGAGAAGA CAGGATGAG CAAGAAAGAAGAAGATAGAGATTACAGAGGGCAGGGCA GAC GAACTGCAG AAATGAA GAAACTA AAG AAGT AAAAATTAATCGGTGGTGATGTGTACTCCGATGACGATGACAAAGAGGGTGATGAGGGCGAAGTAGATGATGGAGTGGACGACGATGGACATGGCGCTGGTGTGCAGGTTGCCGAACTCGACGAAGTGGTGCCTCCCGGGGAGCTGGATGAGCAGCCCCGGCGAGAGCAGCACGAACAGCACCACCGCGATCACCACCGGCCCCCAGTCTGACATCCTTCCTAATTTCCTTTAATTAATGCTTGCTTTGCTTTCCTTCCTTAATCCTTCTTCCTCCTATTTCTTTCCCGA ]
[-] EMBL AK066339 [ ACTGCCCATGCA TACATAATACTAGTAGAAAACAGTAATAATTTAAAACAGTCTTGGTTTATGCATGGTTTGATGTGCTGAACATCAAGGAAGCACCATGTAGAT AGTAGAATTAATATGAGGTAGGATATATATGGAGGAGGGGAGAAGA CAGGATGAG CAAGAAAGAAGAAGATAGAGATTACAGAGGGCAGGGCA GAC GAACTGCAG AAATGAA GAAACTAAAGAAG AAGT AAAAATTAATCGGTGGTGATGTGTACTCCGATGACGATGACAAAGAGGGTGATGAGGGCGAAGTAGATGATGGAGTGGACGACGATGGACATGGCGCTGGTGTGCAGGTTGCCGAACTCGACGAAGTGGTGCCTCCCGGGGAGCTGGATGAGCAGCCCCGGCGAGAGCAGCACGAACAGCACCACCGCGATCACCACCGGCCCCCAGTCTGACATCCTTCCTAATTTCCTTTAATTAATGCTTGCTTTGCTTTCCTTCCTTAATCCTTCTTCCTCCTATTTCTTTCCCGATAGAGCTTCCTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTAGGAGCAGGAGGGTAGTAAGTAAGCGAGGCGAGCAGTAGTAGGAGCAGGTAAGGTA ]
[-] EMBL AU096781 [ tttttttTAATTTAAAACAGTCTTGGTTTATGCATGGTTTGATGTGCTGAACATCAAGGAAGCACCATGTAGAT AGTAGAATTAATATGAGGTAGGATATATATGGAGGAGGGGAGAAGA CAGG GGGG GGGGNAAGAAGAAGATAGAGATTACAGAGGGCANGGCA GAC GAACTGCAG AAATGAA GAAACTAAAGAAG AAGT AAAAATTAATCGGTGGTGATGTGTACTCCGATGACGATGACAAAGAGGGTGATGAGGGCCAA ]
[-] EMBL AU197522 [ tta AGTAGAATTAATAT AGGTAGGATATATATGGAGGAGGGAAGAAGA CAGGATGAG CAAGAAAGAAGAAGATAGAGATTACAGAGGGCAGGGCA GAC GAACTGCAG AAATGAA GAAACTAAAGAAGAAAGT AAAAATTAATCGGTGGTGATGTGTACTCCGATGACGATGACAAAGAGGGTGATGAGGGCGAAGTAGATGATGGAGTGGACGACGATGGACATGGCGCTGGTGTGCAGGTTGCCGAACTCGACGAAGTGGTG CTCCCGGGGAGCTGGATGAGCAGCCCCGGCGAGAGCAGCACGAACAGCACCACCGCGATCACCACCGGCCCCCAGTCTGACATCCTTCCTAATTTCCTTTAATTAATGCTTGCTTTGCTTTCCTTCCTTAATCCTTCTTCCTCCTATTTCTTTCCCGATA ]
[-] EMBL OSS15476A [ ATTACAGAGGGCAGGGCAGGACGGAACTGCAGNAAATGAAGGAAACTANAGAAG AAGTAAAAAATTAATCGGTGGTGATGTGTACTCCGATGACGATGACAAAGAGGGTGATGAGGGCGAAGTAGATGATGGAGTGGACGACGATGGACATGGCGCTGGTGTGCAGGTTGCCGAACTCGACGAAGTGGTGCCTCCCGGGGAGCTGGATGAGCAGCCCCGGCGAGAGCAGCACGAACAGCACCACCGCGATCACCACCGGCCCCCAGTCTGACATCCTTCCTAATTTCCTTTAATTAATGCTTGCTTTGCTTTCCTTCCTTAATCCTTCTTCCTCCTATTTCTTTCCCGATAGAGCTTCCTTGTTGTTGTTGTTGT ]
[-] EMBL AU174750 [ GAGTGGACGACGATGGACATGGCGCTGGTGTGCAGGTTGCCGAACTCGACGAAGTGGTGCCTCCCGGGGAGCTGGATGAGCAGCCCCGGCGAGAGCAGCACGAACAGCACCACCGCGATCACCACCGGCCCCCAGTCTGACATCCTTCCTAATTTCCTTTAATTAATGCTTGCTTTGCTTTCCTTCCTTAATCCTTCTTCCTCCTATTTCTTTCCCGATAGAGCTTCCTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTAGGAGCAGGAGGGTAGTAAGTAAGCGAGGCGAGCAGTAGTAGGAGCAGGTAAGGTAGGGTATGCAGATGCAAATGACTCACTCACTGTACTAGTATTGGCAACGTACGTACAGTACAGAGAGAATGAAAGAGAAAGAAGGT ]
[-] EMBL C73176 [ GCACCACCNCGATCACCACCGGCCCCAAG CTGACATCCTTCCTAATTTCCTTTAATTAATGCTTGCTTTGCTTTCCTTCCTTAATCCTTCTTCCTCCTATTTCTTTCCCGATAGAGCTTCCTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTAGGAGCAGGAGGGTAGTAAGTAAGCGAGGCGAGCAGTAGTAGGAGCAGGTAAGGTAGGGTATGCAGATGCAAATGACTCACTCACTGTACTAGTATTGGCAACGTACGTACAGTACAGAGAGAATGAAAGAGAAAGAAGGTGAGGTGCGGTTCGTGGGAGTGGATGGATGGAAAGCACAGCAGAGAAGAGAANAGAAGCGCAGGTTATTAGGCTCGAATTCGACCGGTGCCTGCTCTACACT]
[-] EMBL OSC0071 [ GGGTAGTAAGTAAGCGAGGCGAGCAGTAGTAGGAGCAGGTAAGGTAGGGTATGCAG ]
consensusID : consensus_13926#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 326 fasta sequence
[AAATTAANCGGTGGTAAATGTGTACNCCGATGACTATGANAAAGAGGGTGATGAGGCCGAAGTAGATGATGAAGTGGACGACGATGNACATGGCGNTGNTGTGNAGGTTGCCGAACTCGACGAAGTGGTGCCTCCCGGGNAGCTGGATNAGAAGCCCCGGCGAGAGNAGCACGAACAGNACCACCGCGATNACCACCGGCCCCNAGTCTGACATCCTTCCTAATTTCCTTTAATTAATGCTTGCTTTGCTTTCCTTCCTTAATCCTTCTTCCTCCTATTTCTTTCCCGATAGAGCTTCCTTGTTGTTGTTGCGGACGCGTGGGCGG]
[-] EMBL OSS11519A [AAATTAANCGGTGGTAAATGTGTACNCCGATGACTATGANAAAGAGGGTGATGAGGCCGAAGTAGATGATGAAGTGGACGACGATGNACATGGCGNTGNTGTGNAGGTTGCCGAACTCGACGAAGTGGTGCCTCCCGGGNAGCTGGATNAGAAGCCCCGGCGAGAGNAGCACGAACAGNACCACCGCGATNACCACCGGCCCCNAGTCTGACATCCTTCCTAATTTCCTTTAATTAATGCTTGCTTTGCTTTCCTTCCTTAATCCTTCTTCCTCCTATTTCTTTCCCGATAGAGCTTCCTTGTTGTTGTTGCGGACGCGTGGGCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13926#0 TTTTTTTTCCAATGATTACATTTATACAGGAGATGATAATAATAACATGAGTAATAAGAG 60
consensus_13926#1 ------------------------------------------------------------
consensus_13926#0 TAGAGGCTGAAAATTTGGGAGAATATATGTGCCAAACTGCTCAATTAAGCTAGCTATGAG 120
consensus_13926#1 ------------------------------------------------------------
consensus_13926#0 ATCTGAATTTGATAGCAGTGCCAACTGCCCATGCATATATAATACTAGTAGAAAACAGTA 180
consensus_13926#1 ------------------------------------------------------------
consensus_13926#0 ATAATTTAAAACAGTCTTGGTTTATGCATGGTTTGATGTGCTGAACATCAAGGAAGCACC 240
consensus_13926#1 ------------------------------------------------------------
consensus_13926#0 ATGTAGATAGTAGAATTAATATGAGGTAGGATATATATGGAGGAGGGGAGAAGACAGGAT 300
consensus_13926#1 ------------------------------------------------------------
consensus_13926#0 GAGCAAGAAAGAAGAAGATAGAGATTACAGAGGGCAGGGCAGACGAACTGCAGAAATGAA 360
consensus_13926#1 ------------------------------------------------------------
consensus_13926#0 GAAACTAAAGAAGAAGTAAAAATTAATCGGTGGTGA-TGTGTACTCCGATGACGATGACA 419
consensus_13926#1 -------------------AAATTAANCGGTGGTAAATGTGTACNCCGATGACTATGANA 41
******* ******* * ******* ******** **** *
consensus_13926#0 AAGAGGGTGATGAGGGCGAAGTAGATGATGGAGTGGACGACGATGGACATGGCGCTGGTG 479
consensus_13926#1 AAGAGGGTGATGAGGCCGAAGTAGATGATGAAGTGGACGACGATGNACATGGCGNTGNTG 101
*************** ************** ************** ******** ** **
consensus_13926#0 TGCAGGTTGCCGAACTCGACGAAGTGGTGCCTCCCGGGGAGCTGGATGAGCAGCCCCGGC 539
consensus_13926#1 TGNAGGTTGCCGAACTCGACGAAGTGGTGCCTCCCGGGNAGCTGGATNAGAAGCCCCGGC 161
** *********************************** ******** ** *********
consensus_13926#0 GAGAGCAGCACGAACAGCACCACCGCGATCACCACCGGCCCCCAGTCTGACATCCTTCCT 599
consensus_13926#1 GAGAGNAGCACGAACAGNACCACCGCGATNACCACCGGCCCCNAGTCTGACATCCTTCCT 221
***** *********** *********** ************ *****************
consensus_13926#0 AATTTCCTTTAATTAATGCTTGCTTTGCTTTCCTTCCTTAATCCTTCTTCCTCCTATTTC 659
consensus_13926#1 AATTTCCTTTAATTAATGCTTGCTTTGCTTTCCTTCCTTAATCCTTCTTCCTCCTATTTC 281
************************************************************
consensus_13926#0 TTTCCCGATAGAGCTTCCTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTAGGAGCAGGA 719
consensus_13926#1 TTTCCCGATAGAGCTTCCTTGTTGTTGTTGCGGACGC-GTGGGCGG-------------- 326
****************************** * * ** * *
consensus_13926#0 GGGTAGTAAGTAAGCGAGGCGAGCAGTAGTAGGAGCAGGTAAGGTAGGGTATGCAGATGC 779
consensus_13926#1 ------------------------------------------------------------
consensus_13926#0 AAATGACTCACTCACTGTACTAGTATTGGCAACGTACGTACAGTACAGAGAGAATGAAAG 839
consensus_13926#1 ------------------------------------------------------------
consensus_13926#0 AGAAAGAAGGTGAGGTGCGGTTCGTGGGAGTGGATGGATGGAAAGCACAGCAGAGAAGAG 899
consensus_13926#1 ------------------------------------------------------------
consensus_13926#0 AANAGAAGCGCAGGTTATTAGGCTCGAATTCGACCGGTGCCTGCTCTACACT 951
consensus_13926#1 ----------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||