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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13932#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1916 fasta sequence
[ATCTCCCGTCACTTCGTCTCCTCCGCTCCTTGCGCCGCCGCCAAGACGAGTCGCGGCTGAACAGAACAGGGGAGGGGCGGCGATCTCCATCTGGCGAGCGAGCAGAGCAGGGCAGGGGAGGGGATCCTGGTCGTATATTCACCTACCTTGGAGTAATTCGCATACGTCACAAGTTAAAAGATGGGTATCCTTGAGAGGATCAAGGAGATTGAAGCCGAGATGGCTCGGACACAGAAAAATAAAGCAACAGAATACCATCTTGGACAACTGAAAGCAAAAATAGCAAAGTTGAGGACACAATTATTAGAGCCCCCTAAGGGTTCCACTGGTGGAGGAGATGGTTTTGAAGTCACAAAGTTTGGGCATGGTCGTGTTGCACTTATTGGATTTCCCAGTGTTGGAAAGTCAACTCTTTTGACTATGTTGACTGGGACCCATTCTGAAGCTGCATCATATGAGTTCACAACCCTCACTTGCATTCCTGGTATTATCCAGTACAATGATACCAAAATCCAACTTCTTGATCTTCCTGGTATCATTGAAGGTGCATCAGAAGGCAAGGGGCGTGGTAGACAGGTCATTGCTGTCGCAAAGTCATCAGATCTTGTGCTCATGGTTCTGGATGCCTCAAAAAGTGAAGGACACCGCCAAATATTAACTAGAGAACTGGAAGCTGTTGGACTTCGTCTGAACAAAAGGCCTCCTCAGATATATTTCAAAAAGAAGAAGAC-TGGTGGAATTTCTTTCAACAGCATGATTCCCTTGACCCATGTTGATGAGAAGCTCTGCTATCAGATAC-TGCATGAGTACAAAATTCACAACGCAGAGGTGTTATTCCGCGAGGATG-CTACCGTGGATGAC-TTCATCGATGTTATTGAA-GGAAATCGGAAGTACATAAAATGTGTTTATGTATATAACAAGATTGATGTTGTTGGTATTGATGATGTGGATAAGCTTGCTCGGCAACCAAATTCGCTTGTGATCAGCTGCAATTTGCAGCTAAACTTGGACAGGCTACTAGCAAGAATGTGGGAGGAAATGGGGCTAGTGAGAGTGTATACAAAGCCACAAGGACAGCAACCTGATTTCACAGATCCAGTTGTTCTTTCTACTGATAGAGGTGGC-TG-CACAGTTGAAGACTTCTGCA-ACCATAT-CCATAGGAGTTTGGT-CAAGGATGTGAAGTATGTACTTGTATGGGG--AACAAGTGCGAGGCATTA-CCCGCAACATTGTGGGCTTGGCCATGTTC-TTCAAGAC-GAGGATGT-CGTCCAGATAGTAAAGAAGAAGGAGAAGGAGGACGGCGGTCGAGGCCGCTTC-AAGTCGCACACAAACGCGCCCGCTCGCATATCCGACAGGGAGAAGAAAGCTCC-TCTGAAGACCTGAATGTGGACATGAAACCGCAG-TTTTGTCGGCTGTGCCAACATCAAAATAGAGCTACTTTTTTGCCTGGAGCTGG-TTGAGCTGTGCGCTAC-TTTTTTCAATGTGGAGCCCTGTTTTGTGCCTTCAGAAGGGCCATACTTGAGTACTCGCCTGGTTCCGTTCCTCCTGTATCTCTCTGCAGAACACACCTTTGCAGTGCAACTATGAACATCATTGTGTATCTGTGCACCATTGCAAATACGGGCGGCAAATGGATGTGCTGCGCTTGTGTTAGAATGTGGTGATAATGTCCAATATCCAATGTGGACGAAGATGCTCACTGCAGTGCAACCATGAACTAATAAATGCATATATGA-GGAGCATGGCACAAGCTCAAATCTGGACCGTTAATTCAAAACGGATGATGCGTCTTATAAAGTGAGTATAAGGCTTGTACTGAACATGAAAGATAGAAAAACGTTCAAATTTAGATGGTATTCCACCGTCCTTTGGTCGGCTCCGATTGGTGCCATATGTTGAATTGAAGACCGGAAATGAAA]
[+] EMBL AK105299 [ATCTCCCGTCACTTCGTCTCCTCCGCTCCTTGCGCCGCCGCCAAGACGAGTCGCGGCTGAACAGAACAGGGGAGGGGCGGCGATCTCCATCTGGCGAGCGAGCAGAGCAGGGCAGGGGAGGGGATCCTGGTCGTATATTCACCTACCTTGGAGTAATTCGCATACGTCACAAGTTAAAAGATGGGTATCCTTGAGAGGATCAAGGAGATTGAAGCCGAGATGGCTCGGACACAGAAAAATAAAGCAACAGAATACCATCTTGGACAACTGAAAGCAAAAATAGCAAAGTTGAGGACACAATTATTAGAGCCCCCTAAGGGTTCCACTGGTGGAGGAGATGGTTTTGAAGTCACAAAGTTTGGGCATGGTCGTGTTGCACTTATTGGATTTCCCAGTGTTGGAAAGTCAACTCTTTTGACTATGTTGACTGGGACCCATTCTGAAGCTGCATCATATGAGTTCACAACCCTCACTTGCATTCCTGGTATTATCCAGTACAATGATACCAAAATCCAACTTCTTGATCTTCCTGGTATCATTGAAGGTGCATCAGAAGGCAAGGGGCGTGGTAGACAGGTCATTGCTGTCGCAAAGTCATCAGATCTTGTGCTCATGGTTCTGGATGCCTCAAAAAGTGAAGGACACCGCCAAATATTAACTAGAGAACTGGAAGCTGTTGGACTTCGTCTGAACAAAAGGCCTCCTCAGATATATTTCAAAAAGAAGAAGAC TGGTGGAATTTCTTTCAACAGCATGATTCCCTTGACCCATGTTGATGAGAAGCTCTGCTATCAGATAC TGCATGAGTACAAAATTCACAACGCAGAGGTGTTATTCCGCGAGGATG CTACCGTGGATGAC TTCATCGATGTTATTGAA GGAAATCGGAAGTACATAAAATGTGTTTATGTATATAACAAGATTGATGTTGTTGGTATTGATGATGTGGATAAGCTTGCTCGGCAACCAAATTCGCTTGTGATCAGCTGCAATTTGCAGCTAAACTTGGACAGGCTACTAGCAAGAATGTGGGAGGAAATGGGGCTAGTGAGAGTGTATACAAAGCCACAAGGACAGCAACCTGATTTCACAGATCCAGTTGTTCTTTCTACTGATAGAGGTGGC TG CACAGTTGAAGACTTCTGCA ACCATAT CCATAGGAGTTTGGT CAAGGATGTGAAGTATGTACTTGTATGGGG AACAAGTGCGAGGCATTA CCCGCAACATTGTGGGCTTGGCCATGTTC TTCAAGAC GAGGATGT CGTCCAGATAGTAAAGAAGAAGGAGAAGGAGGACGGCGGTCGAGGCCGCTTC AAGTCGCACACAAACGCGCCCGCTCGCATATCCGACAGGGAGAAGAAAGCTCC TCTGAAGACCTGAATGTGGACATGAAACCGCAG TTTTGTCGGCTGTGCCAACATCAAAATAGAGCTACTTTTTTGCCTGGAGCTGG TTGAGCTGTGCGCTACTTTTTTTCAATGTGGAGCCCTGTTTTGTGCCTTCAGAAGGGCCATACTTGAGTACTCGCCTGGTTCCGTTCCTCCTGTATCTCTCTGCAGAACACACCTTTGCAGTGCAACTATGAACATC ]
[+] EMBL OSS1195A [ATCTCCCGTCACTTCGTCTNNTCCGCTCNTTGCGCCGCCGCCAAGACGAGTCGCGGCTGAACAGAACAGGGGAGGGGCGGCGATCTCCATCTGGCGAGCGAGCAGAGCAGGGCAGGGGAGGGGATCCTGGTCGTATATTCACCTACCTTGGAGTAATTCGCATACGTCACAAGTTAAAAGATGGGTATCNTTGAGAGGATCAAGGAGATTGAAGCCGAGATGGCTCGGACACAGNAAAATA ]
[+] EMBL AK111540 [ CTTGCGCCGCCGCCAAGACGAGTCGCGGCTGAACAGAACAGGGGAGGGGCGGCGATCTCCATCTGGCGAGCGAGCAGAGCAGGGCAGGGGAGGGGATCCTGGTCGTATATTCACCTACCTTGGAGTAATTCGCATACGTCACAAGTTAAAAGATGGGTATCCTTGAGAGGATCAAGGAGATTGAAGCCGAGATGGCTCGGACACAGAAAAATAAAGCAACAGAATACCATCTTGGACAACTGAAAGCAAAAATAGCAAAGTTGAGGACACAATTATTAGAGCCCCCTAAGGGTTCCACTGGTGGAGGAGATGGTTTTGAAGTCACAAAGTTTGGGCATGGTCGTGTTGCACTTATTGGATTTCCCAGTGTTGGAAAGTCAACTCTTTTGACTATGTTGACTGGGACCCATTCTGAAGCTGCATCATATGAGTTCACAACCCTCACTTGCATTCCTGGTATTATCCAGTACAATGATACCAAAATCCAACTTCTTGATCTTCCTGGTATCATTGAAGGTGCATCAGAAGGCAAGGGGCGTGGTAGACAGGTCATTGCTGTCGCAAAGTCATCAGATCTTGTGCTCATGGTTCTGGATGCCTCAAAAAGTGAAGGACACCGCCAAATATTAACTAGAGAACTGGAAGCTGTTGGACTTCGTCTGAACAAAAGGCCTCCTCAGATATATTTCAAAAAGAAGAAGAC TGGTGGAATTTCTTTCAACAGCATGATTCCCTTGACCCATGTTGATGAGAAGCTCTGCTATCAGATAC TGCATGAGTACAAAATTCACAACGCAGAGGTGTTATTCCGCGAGGATG CTACCGTGGATGAC TTCATCGATGTTATTGAA GGAAATCGGAAGTACATAAAATGTGTTTATGTATATAACAAGATTGATGTTGTTGGTATTGATGATGTGGATAAGCTTGCTCGGCAACCAAATTCGCTTGTGATCAGCTGCAATTTGCAGCTAAACTTGGACAGGCTACTAGCAAGAATGTGGGAGGAAATGGGGCTAGTGAGAGTGTATACAAAGCCACAAGGACAGCAACCTGATTTCACAGATCCAGTTGTTCTTTCTACTGATAGAGGTGGC TG CACAGTTGAAGACTTCTGCA ACCATAT CCATAGGAGTTTGGT CAAGGATGTGAAGTATGTACTTGTATGGGG AACAAGTGCGAGGCATTA CCCGCAACATTGTGGGCTTGGCCATGTTC TTCAAGAC GAGGATGT CGTCCAGATAGTAAAGAAGAAGGAGAAGGAGGACGGCGGTCGAGGCCGCTTC AAGTCGCACACAAACGCGCCCGCTCGCATATCCGACAGGGAGAAGAAAGCTCC TCTGAAGACCTGAATGTGGACATGAAACCGCAG TTTTGTCGGCTGTGCCAACATCAAAATAGAGCTACTTTTTTGCCTGGAGCTGG TTGAGCTGTGCGCTAC TTTTTTCAATGTGGAGCCCTGTTTTGTGCCTTCAGAAGGGCCATACTTGAGTACTCGCCTGGTTCCGTTCCTCCTGTATCTCTCTGCAGAACACACCTTTGCAGTGCAACTATGAACATCATTGTGTATCTGTGCACCATTGCAAATACGGGCGGCAAATGGATGTGCTGCGCTTGTGTTAGAATGTGGTGATAATGTCCAATATCCAATGTGGACGAAGATGCTCACTGCAGTGCAACCATGAACTAATAAATGCATATATGA GGAGCATGGCACAAGCTCAAATCTGGACCGTTAATTCAAAACGGATGATGCGTCTTATAAAGTGAGTATAAG ]
[+] EMBL C26388 [ tgaATACCAAAATCCAACTTCTTGANCTTCCTGGTATCATTGAAGGTGCATCAGAAGGCAAGGGGCGTGGTAGACAGGTCATTGCTGTCGCAAAGTCATCAGATCTTGTGCTCATGGTTCTGGATGCCTCAAAAAGTGAAGGACACCGCCAAATATTAACTAGAGAACTGGAAGCTGTTGGACTTCGTCTGAACAAAAGGCCTCCTCAGATATATTTCAAAAAGAAGAAGAC TGGTGGAATTTCTTTCAACAGCATGATTCCCTTGACCCATGTTGATGAGAAGCTCTGCTATCAGATAC TGCATGAGTACAAAATTCACAACGCAGAGGTGTTATTCCGCGAGGATG CTACCGTGGATGACTTTCATCGATGTTATTGAAGGGNAATCGGGAGTNCATAAAATGTG ]
[+] EMBL AU095108 [ GGTCATNNCTGTCGCAAAGTCATCAGATCTTGTGCTCATGGTTCNGGATGCCTC AAAGTGAAGGACACCGCCAAATATTAACNAGAGAACNGGAAGCTGTTGGACNTCGTCTGAACAAAAGGCCTCCTCAGATATATTTCAAAAAGAAGAAGACGNGGTGGAATTTCTTTCAACAGCATGATTCCCTTGACCCATGTTGATGAGAAGCNCNGCTATCAGATACGGGCATGAGTACAAAATTCACAACGCAGAGGTGTTATCCCGCGAGGATGCCAACCG ]
[+] EMBL AK112055 [ TGCTCATGGTTCTGGATGCCTCAAAAAGTGAAGGACACCGCCAAATATTAACTAGAGAACTGGAAGCTGTTGGACTTCGTCTGAACAAAAGGCCTCCTCAGATATATTTCAAAAAGAAGAAGAC TGGTGGAATTTCTTTCAACAGCATGATTCCCTTGACCCATGTTGATGAGAAGCTCTGCTATCAGATAC TGCATGAGTACAAAATTCACAACGCAGAGGTGTTATTCCGCGAGGATG CTACCGTGGATGAC TTCATCGATGTTATTGAA GGAAATCGGAAGTACATAAAATGTGTTTATGTATATAACAAGATTGATGTTGTTGGTATTGATGATGTGGATAAGCTTGCTCGGCAACCAAATTCGCTTGTGATCAGCTGCAATTTGCAGCTAAACTTGGACAGGCTACTAGCAAGAATGTGGGAGGAAATGGGGCTAGTGAGAGTGTATACAAAGCCACAAGGACAGCAACCTGATTTCACAGATCCAGTTGTTCTTTCTACTGATAGAGGTGGC TG CACAGTTGAAGACTTCTGCA ACCATAT CCATAGGAGTTTGGT CAAGGATGTGAAGTATGTACTTGTATGGGG AACAAGTGCGAGGCATTA CCCGCAACATTGTGGGCTTGGCCATGTTC TTCAAGAC GAGGATGT CG ]
[+] EMBL OS0639A [ gggCAAAATTCACAACGCAGAGGTGTTATTCCGCGAGGATG CTACCGTGGATGAC TTCATCGATGTTATTGAA GGAAATCGGAAGTACATAAAATGTGTTTATGTATATAACAAGATTGATGTTGTTGGTATTGATGATGTGGATAAGCTTGCTCGGCAACCAAATTCGCTTGTGATCAGCTGCAATTTGCAGCTAAACTTGGACAGGCTACTAGCAAGAATGTGGGAGGAAATGGGGCTAGTGAGAGTGTATACAAAGCCACAAGGACAGCAACCTGATTTCACAGATCCAGTTGTTCTTTCTACTGATAGAGGTGGC TG CACAGTTGAAGACTTCTGC ACCA ]
[-] EMBL CB673079 [ CAACCAAATTCGCTTGTGATCAGCTGCAATTTGCAGCTAAACTTGGACAGGCTACTAGCAAGAATGTGGGAGGAAATGGGGCTAGTGAGAGTGTATACAAAGCCACAAGGACAGCAACCTGATTTCACAGATCCAGTTGTTCTTTCTACTGATAGAGGTGGC TG CACAGTTGAAGACTTCTGCA ACCATAT CCATAGGAGTTTGGT CAAGGATGTGAAGTATGTACTTGTATGGGG AACAAGTGCGAGGCATTA CCCGCAACATTGTGGGCTTGGCCATGTTC TTCAAGAC GAGGATGT CGTCCAGATAGTAAAGAAGAAGGAGAAGGAGGACGGCGGTCGAGGCCGCTTC AAGTCGCACACAAACGCGCCCGCTCGCATATCCGACAGGGAGAAGAAAGCTCC TCTGAAGACCTGAATGTGGACATGAAACCGCAG TTTTGTCGGCTGTGCCAACATCAAAATAGAGCTACTTTTTTGCCTGGAGCTGG TTGAGCTGTGCGCTAC TTTTTTCAATGTGGAGCCCTGTTTTGTGCCTTCAGAAGGGCCATACTTGAGTACTCGCCTGGTTCCGTTCCTCCTGTATCTCTCTGCAGAACACACCTTTGCAGTGCAACTATGAACATCATTGTGTATCTGTGCACCATTGCAAATACGGGCGGCAAATGGATGTGCTGCGCTTGTGTTAGAATGTGGTGATAATGTCCAATATCCAATGTGGACGAAGATGCTCACTGCAGTGCAACCATGAACTAATAAATGCATATATGA GGAGCATGGCAAAAaaaaga ]
[+] EMBL AU108548 [ GATCCAGTTGTTCTTTCTACTGATAGAGTTGGCTTGCCACATTTGAAGACTTCTGCANCCCATATCCCATAGGATTTTGGTCCAAGGATGTGAAGTATNTACTTGTATGGGGGAAACAAGTGCGAGGCATTACCCCGCAACATTGTGGGCTTGGCCATGTTCTTTNAAGNCGGAGGATGTCCGTCCAGATAGTAAAGAAGAAGGAGAAGGAGGACGNCGTTCGAGGCCGCTTCAAAGTCGCACACAAACGCGCCCGNTCGCATATCCGACAGGGAGAAGAAAGCTCC TCTGAAGACCTGAATGTGGACATGAAACCGCAG TTTTGTCGGCTGTGCCAACATCAAAATAGAGCTACTTTTTTGCCTGGAGCTGG TTGAGCTGTGCGCTAC TTTTTTCAATGTGGAGCCCTGTTTTGTGCCTTCAGAAGGGCCATACTTGAGTACTCGCCTGGTTCCGTTCCTCCTGTATCTCTCTGCAGAACACACCTTTGCAGTGCAACTATGAACATCATTGTGTATCTGTGCACCATTGCAAATACGGGCGGCAAATGGATGT NTGCGCTTGTGTTAGAATGTGGTGATAATGTCCAATATCCAATGTGGACGAAGATGCTCACTGCAGTGCAACCATGAACTAATAAATGCATATATGA GGAGCATGGCACAAGCTCAAATCTGGACCGTTAATTCAAAAaaa ]
[+] EMBL BI806711 [ atTCGCACAC AACGCGCCCGCTNGCATATCCGACA GGAGAAGAAAGCTCCTTCTG AGACCTGAATGTGGACATGAAACC CAGTTTTTGTC GCTGTGCCAACATCAAAATAGAGCTACTTTTTTGCCTGGAGCTGGTTTGA CTGTGCGCTAC TTTTTTCAATGTGGAGCCCTGTTTTGT CCTTCAGAAGGGCCATACTTGAGTACTCGCCTGGTTCCGTTCCTCCTGTATCTCTCTGCAGAACACACCTTTGCAGTGCAACTATGAACATCATTGTGTATCTGTGCACCATTGCAAATACGGGCGGCAAATGGATGTGCTGCGCTTGTGTTAGAATGTGGTGATAATGTCC ATATCCAATGTGGACGAAGATGCTCACTGCAGTGCAACCATGAACTAATAAATGCATATATGACGGAGCATGGCACCAGCTCAAATCTGGACCGTTAATTC AAACGGATGATGCGTCTTATAAAGTGAGTATAAGGCTTGTACTGAACATGAAAGATAGAAAAACGTTCAAATTTAGATGGTATTCCACCGTCCTTTGGTCGGCTCCGATTGGTGCCATATGTTGAATTGAAGACCGGAAATGAAA]
consensusID : consensus_13932#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 691 fasta sequence
[TCGCCACCCAATTGCGTCTGTGATCACGTGCAATTGGCACTTAAACTGGGCAGGGTTACTAGCAAGAATTGGGAGGAAATGGCCCTAGTGAGAGTTGTATACAAAGCCCCAAGGCACGCACCCTGATTTCACAAATCCAGTTGTTCTTTCTACTAAAAAAGGTGGCTGCACAGTTGAAGACTTTTGCAACCATATCCATAGGAGTTTGGTCAAGGATGTGAAGTATGTACTTGTATGGGGAACAAGTGCGAGGCATTACCCGCAACATTGTGGGCTTGGCCATGTTTTTCAAGACGAGGATGTTGTCCAGATAGTAAAGAAGAAGGAGAAGGAGGCCGGCGGTCGAGGCCGCTTCAAGTCGCACACAAACGCGCCCGCTCGCATATCCGACAGGGAGAAGAAAGCTCCTCTGAAGACCTG-ATGTGGACATGAAACCGCAGTTTTGTTGGCTGTGCCAACATCAAAATAGAGCTACTTTTTTGCCTGGAGCTGGTTGAGCTGTGCGCTACTTTTTTCAATGTGGAGCCCTGTTTTGTGCCTTAAGAAGGGCCATACTTGAGTACTCGCCTGGTTCCGTTCCTCCTGTATCTCTCTGCAGAACACACCTTTGCAGTGCAACTATGAACATCATTGTGTATCTGTGCCCCCTTGCAA--AAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNAN]
[-] EMBL CA760038 [TCGCCACCCAATTGCGTCTGTGATCACGTGCAATTGGCACTTAAACTGGGCAGGGTTACTAGCAAGAATTGGGAGGAAATGGCCCTAGTGAGAGTTGTATACAAAGCCCCAAGGCACGCACCCTGATTTCACAAATCCAGTTGTTCTTTCTACTAAAAAAGGTGGCTGCACAGTTGAAGACTTTTGCAACCATATCCATAGGAGTTTGGTCAAGGATGTGAAGTATGTACTTGTATGGGGAACAAGTGCGAGGCATTACCCGCAACATTGTGGGCTTGGCCATGTTTTTCAAGACGAGGATGTTGTCCAGATAGTAAAGAAGAAGGAGAAGGAGGCCGGCGGTCGAGGCCGCTTCAAGTCGCACACAAACGCGCCCGCTCGCATATCCGACAGGGAGAAGAAAGCTCCTCTGAAGACCTG ATGTGGACATGAAACCGCAGTTTTGTTGGCTGTGCCAACATCAAAATAGAGCTACTTTTTTGCCTGGAGCTGGTTGAGCTGTGCGCTACTTTTTTCAATGTGGAGCCCTGTTTTGTGCCTTAAGAAGGGCCATACTTGAGTACTCGCCTGGTTCCGTTCCTCCTGTATCTCTCTGCAGAACACACCTTTGCAGTGCAACTATGAACATCATTGTGTATCTGTGCCCCCTTGCAA AAAAAAAAAAAAAA ]
[+] EMBL AU033020 [ CGCAACATTGTGGGCTTGGCCATGTTCTTCAAGACGAGGATGTCGTCCAGATAGTNAAGNAGAAGGAGAAGGAGGACGGCGGTCGAGGCCGCTTCAAGTCGCACANAAACGCGCCCGCTCGCATNTCCGACAGGGAGAAGAAAGCTCCTNTNAAGACCTGAATGTGGACATGAAACCGCAGTTTTGTCGGCTGTGCCAACATCAAAATAGAGCTACTTTTTTGCCTGGAGCTGGTTGAGCTGTGCGCTACTTTTTTCAATGTGGAGCCCTGTTTTGTGCCTTCAGAAGGGCCATACTTGAGTACTCGCCTGGTTCCGTTCCTCCTGTATNTCTCTNCAGAACACACCTTTGCAGTGCAACTATGAACATCATTGTGTATC AAAAAAATAAAAANNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNAN]
consensusID : consensus_13932#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 412 fasta sequence
[TCCTTCAGAAGGCCCATACTTGAGTACTCGCCTGGTTCCGTTCCTCCTGTATCTCTCGCAGAACACACCTTTGCAGTGCAACTATGAACATCATTGTGTATCTGTGCACCATTGCAATACGGACGCCAATGGATGTGCTGCGCTTGTGTTAGAATGTGGTGATAATGTCCAATATCCATGTGGACGAAGATGCTCACCTCAGTGGCAACCCATTGAACCTAATTAAATTGCCATTATTATTGAGGGAGCCATGGCACAAGCTCAAATCTGGACCGTTAATTCAAACGGATGATGCTCTTATAAAGTGAGTATAAGCTGTACTGACTGAAAGATAGCAACCGTCAATTAGATGTATCCCCTCCTTGGTCGCTCCGATTTGGTGCCATATTTTTGGAAATTTGAACCGACCGGA]
[+] EMBL BI797547 [TCCTTCAGAAGGCCCATACTTGAGTACTCGCCTGGTTCCGTTCCTCCTGTATCTCTCGCAGAACACACCTTTGCAGTGCAACTATGAACATCATTGTGTATCTGTGCACCATTGCAATACGGACGCCAATGGATGTGCTGCGCTTGTGTTAGAATGTGGTGATAATGTCCAATATCCATGTGGACGAAGATGCTCACCTCAGTGGCAACCCATTGAACCTAATTAAATTGCCATTATTATTGAGGGAGCCATGGCACAAGCTCAAATCTGGACCGTTAATTCAAACGGATGATGCTCTTATAAAGTGAGTATAAGCTGTACTGACTGAAAGATAGCAACCGTCAATTAGATGTATCCCCTCCTTGGTCGCTCCGATTTGGTGCCATATTTTTGGAAATTTGAACCGACCGGA]
consensusID : consensus_13932#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 195 fasta sequence
[TGCGCTACTTTTTTCAATGTGGAGCCCTNTTTTGTGCCTTCAGAAGGGCNATACTTGNGTACTCGCCTGGTTCCGTTCCTCCTGTATCTCTCTGCNGAACACACCTTTGNNGTGCNACTATGAACATCATTGTGTATCTGTGCACNNTTGNNAATACGGGCGGNAAATGGNTGTCTGCGCTTGTGTTAAAAAAAA]
[+] EMBL AU058445 [TGCGCTACTTTTTTCAATGTGGAGCCCTNTTTTGTGCCTTCAGAAGGGCNATACTTGNGTACTCGCCTGGTTCCGTTCCTCCTGTATCTCTCTGCNGAACACACCTTTGNNGTGCNACTATGAACATCATTGTGTATCTGTGCACNNTTGNNAATACGGGCGGNAAATGGNTGTCTGCGCTTGTGTTAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13932#1 ------------------------------------------------------------
consensus_13932#3 ------------------------------------------------------------
consensus_13932#0 ATCTCCCGTCACTTCGTCTCCTCCGCTCCTTGCGCCGCCGCCAAGACGAGTCGCGGCTGA 60
consensus_13932#2 ------------------------------------------------------------
consensus_13932#1 ------------------------------------------------------------
consensus_13932#3 ------------------------------------------------------------
consensus_13932#0 ACAGAACAGGGGAGGGGCGGCGATCTCCATCTGGCGAGCGAGCAGAGCAGGGCAGGGGAG 120
consensus_13932#2 ------------------------------------------------------------
consensus_13932#1 ------------------------------------------------------------
consensus_13932#3 ------------------------------------------------------------
consensus_13932#0 GGGATCCTGGTCGTATATTCACCTACCTTGGAGTAATTCGCATACGTCACAAGTTAAAAG 180
consensus_13932#2 ------------------------------------------------------------
consensus_13932#1 ------------------------------------------------------------
consensus_13932#3 ------------------------------------------------------------
consensus_13932#0 ATGGGTATCCTTGAGAGGATCAAGGAGATTGAAGCCGAGATGGCTCGGACACAGAAAAAT 240
consensus_13932#2 ------------------------------------------------------------
consensus_13932#1 ------------------------------------------------------------
consensus_13932#3 ------------------------------------------------------------
consensus_13932#0 AAAGCAACAGAATACCATCTTGGACAACTGAAAGCAAAAATAGCAAAGTTGAGGACACAA 300
consensus_13932#2 ------------------------------------------------------------
consensus_13932#1 ------------------------------------------------------------
consensus_13932#3 ------------------------------------------------------------
consensus_13932#0 TTATTAGAGCCCCCTAAGGGTTCCACTGGTGGAGGAGATGGTTTTGAAGTCACAAAGTTT 360
consensus_13932#2 ------------------------------------------------------------
consensus_13932#1 ------------------------------------------------------------
consensus_13932#3 ------------------------------------------------------------
consensus_13932#0 GGGCATGGTCGTGTTGCACTTATTGGATTTCCCAGTGTTGGAAAGTCAACTCTTTTGACT 420
consensus_13932#2 ------------------------------------------------------------
consensus_13932#1 ------------------------------------------------------------
consensus_13932#3 ------------------------------------------------------------
consensus_13932#0 ATGTTGACTGGGACCCATTCTGAAGCTGCATCATATGAGTTCACAACCCTCACTTGCATT 480
consensus_13932#2 ------------------------------------------------------------
consensus_13932#1 ------------------------------------------------------------
consensus_13932#3 ------------------------------------------------------------
consensus_13932#0 CCTGGTATTATCCAGTACAATGATACCAAAATCCAACTTCTTGATCTTCCTGGTATCATT 540
consensus_13932#2 ------------------------------------------------------------
consensus_13932#1 ------------------------------------------------------------
consensus_13932#3 ------------------------------------------------------------
consensus_13932#0 GAAGGTGCATCAGAAGGCAAGGGGCGTGGTAGACAGGTCATTGCTGTCGCAAAGTCATCA 600
consensus_13932#2 ------------------------------------------------------------
consensus_13932#1 ------------------------------------------------------------
consensus_13932#3 ------------------------------------------------------------
consensus_13932#0 GATCTTGTGCTCATGGTTCTGGATGCCTCAAAAAGTGAAGGACACCGCCAAATATTAACT 660
consensus_13932#2 ------------------------------------------------------------
consensus_13932#1 ------------------------------------------------------------
consensus_13932#3 ------------------------------------------------------------
consensus_13932#0 AGAGAACTGGAAGCTGTTGGACTTCGTCTGAACAAAAGGCCTCCTCAGATATATTTCAAA 720
consensus_13932#2 ------------------------------------------------------------
consensus_13932#1 ------------------------------------------------------------
consensus_13932#3 ------------------------------------------------------------
consensus_13932#0 AAGAAGAAGACTGGTGGAATTTCTTTCAACAGCATGATTCCCTTGACCCATGTTGATGAG 780
consensus_13932#2 ------------------------------------------------------------
consensus_13932#1 ------------------------------------------------------------
consensus_13932#3 ------------------------------------------------------------
consensus_13932#0 AAGCTCTGCTATCAGATACTGCATGAGTACAAAATTCACAACGCAGAGGTGTTATTCCGC 840
consensus_13932#2 ------------------------------------------------------------
consensus_13932#1 ------------------------------------------------------------
consensus_13932#3 ------------------------------------------------------------
consensus_13932#0 GAGGATGCTACCGTGGATGACTTCATCGATGTTATTGAAGGAAATCGGAAGTACATAAAA 900
consensus_13932#2 ------------------------------------------------------------
consensus_13932#1 -----------------------------------------------------------T 1
consensus_13932#3 ------------------------------------------------------------
consensus_13932#0 TGTGTTTATGTATATAACAAGATTGATGTTGTTGGTATTGATGATGTGGATAAGCTTGCT 960
consensus_13932#2 ------------------------------------------------------------
consensus_13932#1 CGCCACCCAATTGCGTCTGTGATCACGTGCAATTGGCACTTAAACTGGGCAGGGTTACTA 61
consensus_13932#3 ------------------------------------------------------------
consensus_13932#0 CGGCAACCAAATTCGCTTGTGATCAGCTGCAATTTGCAGCTAAACTTGGACAGGCTACTA 1020
consensus_13932#2 ------------------------------------------------------------
consensus_13932#1 GCAAGAAT-TGGGAGGAAATGGCCCTAGTGAGAGTTGTATACAAAGCCCCAAGGCACGCA 120
consensus_13932#3 ------------------------------------------------------------
consensus_13932#0 GCAAGAATGTGGGAGGAAATGGGGCTAGTGAGAGT-GTATACAAAGCCACAAGGACAGCA 1079
consensus_13932#2 ------------------------------------------------------------
consensus_13932#1 CCCTGATTTCACAAATCCAGTTGTTCTTTCTACTAAAAAAGGTGGCTGCACAGTTGAAGA 180
consensus_13932#3 ------------------------------------------------------------
consensus_13932#0 ACCTGATTTCACAGATCCAGTTGTTCTTTCTACTGATAGAGGTGGCTGCACAGTTGAAGA 1139
consensus_13932#2 ------------------------------------------------------------
consensus_13932#1 CTTTTGCAACCATATCCATAGGAGTTTGGTCAAGGATGTGAAGTATGTACTTGTATGGGG 240
consensus_13932#3 ------------------------------------------------------------
consensus_13932#0 CTTCTGCAACCATATCCATAGGAGTTTGGTCAAGGATGTGAAGTATGTACTTGTATGGGG 1199
consensus_13932#2 ------------------------------------------------TCCTTCAGAAGG 12
consensus_13932#1 AACAAGTGCGAGGCATTACCCGCAACATTGTGGGCTTGGCCATGTTTTTCAAGACGAGGA 300
consensus_13932#3 ------------------------------------------------------------
consensus_13932#0 AACAAGTGCGAGGCATTACCCGCAACATTGTGGGCTTGGCCATGTTCTTCAAGACGAGGA 1259
consensus_13932#2 CCCATACTTGAG----TACTCGCCTGGTTCCGTTCCTC-CTGTATCTCTCGCAGAACACA 67
consensus_13932#1 TGTTGTCCAGATAGTAAAGAAGAAGGAGAAGGAGGCCGGCGGTCGAGGCCGCTTCAAGTC 360
consensus_13932#3 ------------------------------------------------------------
consensus_13932#0 TGTCGTCCAGATAGTAAAGAAGAAGGAGAAGGAGGACGGCGGTCGAGGCCGCTTCAAGTC 1319
consensus_13932#2 CCTTTGCAGTGCAACTATGAACATCATTGTGTATCTGTGCA-------CCATTGCAATAC 120
consensus_13932#1 GCACACAAACGCGCCCGCT-CGCATATCCGACAGGGAGAAGAAAGC-TCCTCTGAAGACC 418
consensus_13932#3 ------------------------------------------------------------
consensus_13932#0 GCACACAAACGCGCCCGCT-CGCATATCCGACAGGGAGAAGAAAGC-TCCTCTGAAGACC 1377
consensus_13932#2 GGACGCCAATGGATGTGCTGCGCTTGTGTTAGAATGTGGTGATAATGTCCAATATCCATG 180
consensus_13932#1 TGA-TGTGGACATGAAACCGCAGTTTTGTTGGCTGTGCCAACATCAAAATAGAGCTACTT 477
consensus_13932#3 ------------------------------------------------------------
consensus_13932#0 TGAATGTGGACATGAAACCGCAGTTTTGTCGGCTGTGCCAACATCAAAATAGAGCTACTT 1437
consensus_13932#2 TGGACGAAGATGCTCACCTCAGTGGCAACCCATTGAACCTA-ATTAAATTGCCATTATTA 239
consensus_13932#1 TTTTG-----CCTGGAGCTGGTTGAGCTGTGCGCTACTTTTTTCAATGTGGAGCCCTGTT 532
consensus_13932#3 -----------------------------TGCGCTACTTTTTTCAATGTGGAGCCCTNTT 31
consensus_13932#0 TTTTG-----CCTGGAGCTGGTTGAGCTGTGCGCTACTTTTTTCAATGTGGAGCCCTGTT 1492
consensus_13932#2 TTGAGGGAGCCATGGCACAAGCTCAAATCTGGACCGTTAATTCAAACGGATGATGCTCTT 299
** * * ** ** * ** **
consensus_13932#1 TTGTGCCTTAAGAAGGGCCATACTTGAGTACTCGCCTGGTTCCGTTCCTCC--TGTATCT 590
consensus_13932#3 TTGTGCCTTCAGAAGGGCNATACTTGNGTACTCGCCTGGTTCCGTTCCTCC--TGTATCT 89
consensus_13932#0 TTGTGCCTTCAGAAGGGCCATACTTGAGTACTCGCCTGGTTCCGTTCCTCC--TGTATCT 1550
consensus_13932#2 ATA-AAGTGAGTATAAGCTGTACT-GACTGAAAGATAGCAACCGTCAATTAGATGTATCC 357
* * * ** **** * * * * **** * ******
consensus_13932#1 CTCTGCAGAACACACCTTTGCAGTGCAACTATGAACATCATTGTGTATCTGTGCCCCCTT 650
consensus_13932#3 CTCTGCNGAACACACCTTTGNNGTGCNACTATGAACATCATTGTGTATCTGTGCACNNTT 149
consensus_13932#0 CTCTGCAGAACACACCTTTGCAGTGCAACTATGAACATCATTGTGTATCTGTGCACCATT 1610
consensus_13932#2 CCTCCTTGGTCGCTCCGATTTGGTGCCAT-------ATTTTTGGAAATTTGAACCGACCG 410
* * * * ** * **** * ** *** ** ** *
consensus_13932#1 GCAAAAAAAAAAAAAAAAAAAAAAAA-AAAAAAAANNNNNAN------------------ 691
consensus_13932#3 GNNAATACGGGCGGNAAATGGNTGTC-TGCGCTTGTGTTAAAAAAAA------------- 195
consensus_13932#0 GCAAATACGGGCGGCAAATGGATGTGCTGCGCTTGTGTTAGAATGTGGTGATAATGTCCA 1670
consensus_13932#2 GA---------------------------------------------------------- 412
*
consensus_13932#1 ------------------------------------------------------------
consensus_13932#3 ------------------------------------------------------------
consensus_13932#0 ATATCCAATGTGGACGAAGATGCTCACTGCAGTGCAACCATGAACTAATAAATGCATATA 1730
consensus_13932#2 ------------------------------------------------------------
consensus_13932#1 ------------------------------------------------------------
consensus_13932#3 ------------------------------------------------------------
consensus_13932#0 TGAGGAGCATGGCACAAGCTCAAATCTGGACCGTTAATTCAAAACGGATGATGCGTCTTA 1790
consensus_13932#2 ------------------------------------------------------------
consensus_13932#1 ------------------------------------------------------------
consensus_13932#3 ------------------------------------------------------------
consensus_13932#0 TAAAGTGAGTATAAGGCTTGTACTGAACATGAAAGATAGAAAAACGTTCAAATTTAGATG 1850
consensus_13932#2 ------------------------------------------------------------
consensus_13932#1 ------------------------------------------------------------
consensus_13932#3 ------------------------------------------------------------
consensus_13932#0 GTATTCCACCGTCCTTTGGTCGGCTCCGATTGGTGCCATATGTTGAATTGAAGACCGGAA 1910
consensus_13932#2 ------------------------------------------------------------
consensus_13932#1 ------
consensus_13932#3 ------
consensus_13932#0 ATGAAA 1916
consensus_13932#2 ------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||