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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13938#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1366 fasta sequence
[TTCCTCGAGCACTGTTGGCCTACTGGAAAGGCTGAAGAGGCATCAAAAGCATTGCGCCCGGAGAAAAATATTTCTGGTAAACACGCTGAATCTGAAGAACTAGTTTTTGGTGAAGATTACGAAGATTTGCAGAAATCTCTGGAGCAAGCAAGGAAATTAGCTCTAAGGAAACAGGAAGAGACTGCTGCATCTGGTCCTCTGGCTGTAGCAGAACTGGCTACTGCAAGAATAGGTCAAAAAGATGCAGATGCTGCCGAAGGAGATGCACAACAAAATAAGGTTGTTATCACAGAGATGGAAGAGTTTGTGTGGGGCCTACAGTTGAATGAAGAGACTCGCAAACCAGAAGCAGAAGATGTTTTTATGGATGAAGATGATGACATGATCATGTCAGACACTGTGGCAAAAGATGACATGAGTGGGCTGGCCGTGGTCAAAGAGGAAACTAGCGTTGAAGTCCCAGTAAAGAATGAAGAGGAAGAAGAGCTAAAACCAGATGAGATTGTACATGGAGCTGCAGTTGGCAAGGGTTTGGCTGGTGCTTTGAAGTTTCTGAAGGAACGAGGAACCCTCAATGAGGGCACAGATTGGGGAGGCAGAACCACAGATAAGAAGAAAAGCAAGCTTGCTGGTATTGAGGATGGACCAAAAGATATTCGCATAGAAAGAATTGATGAATTTGGTCGAGTGATGACACCGAAGGAGGCATTTCGGGATCTTTCACACAAATTCCATGGC-AAGG-CACCTGGTAAAATGAAGCAGGAACGGCGCCAAAAAAAGTATCGGGATGAGTTGAAAACCAAGCGAATGATATCTTCTGACACACCATTAATGTCTGCGGAGAAGATGAGAGAGGCTCAAGCT-CTCAG-CAAAACACCATACCTTGTTTTAAGTGGCAATGCAAAATCAGGTCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGGGAGTCTGACGCCCATGCTTGGGGCCAAAAAGGTCGAGCACTTTCTGGGCATCAAACGAAGCGCCCAGGGTGGAGGATTGCCTCCACCACCTCCAAAGAAGCCAAAGAACTGAACCTGCAGTGGACTTGGCTGAGTAGAAATCAGGTGTTTTTTAGTGCATTTGCTACTGTAGGTTTGGAGCAGATTTCGAGGGACCTACACCAGCAGATACCAACGACCCATGAAGCAGCCCCAAATGAGTTAACATGTAAGAACCTGTGAATTTTTATTCCAAGTTGATTATGTTAACATTCTGACATGGGCGATGTAACTTTTGTAACCAGCTGTACTTACAAGGCTGCACCACAAATGCAGTCAGAACTACAGAGGTGGATTTAAAAAAAAAAAAAAAAAAAAGGCCACAT]
[+] EMBL AK105023 [TTCCTCGAGCACTGTTGGCCTACTGGAAAGGCTGAAGAGGCATCAAAAGCATTGCGCCCGGAGAAAAATATTTCTGGTAAACACGCTGAATCTGAAGAACTAGTTTTTGGTGAAGATTACGAAGATTTGCAGAAATCTCTGGAGCAAGCAAGGAAATTAGCTCTAAGGAAACAGGAAGAGACTGCTGCATCTGGTCCTCTGGCTGTAGCAGAACTGGCTACTGCAAGAATAGGTCAAAAAGATGCAGATGCTGCCGAAGGAGATGCACAACAAAATAAGGTTGTTATCACAGAGATGGAAGAGTTTGTGTGGGGCCTACAGTTGAATGAAGAGACTCGCAAACCAGAAGCAGAAGATGTTTTTATGGATGAAGATGATGACATGATCATGTCAGACACTGTGGCAAAAGATGACATGAGTGGGCTGGCCGTGGTCAAAGAGGAAACTAGCGTTGAAGTCCCAGTAAAGAATGAAGAGGAAGAAGAGCTAAAACCAGATGAGATTGTACATGGAGCTGCAGTTGGCAAGGGTTTGGCTGGTGCTTTGAAGTTTCTGAAGGAACGAGGAACCCTCAATGAGGGCACAGATTGGGGAGGCAGAACCACAGATAAGAAGAAAAGCAAGCTTGCTGGTATTGAGGATGGACCAAAAGATATTCGCATAGAAAGAATTGATGAATTTGGTCGAGTGATGACACCGAAGGAGGCATTTCGGGATCTTTCACACAAATTCCATGGC AAGG CACCTGGTAAAATGAAGCAGGAACGGCGCCAAAAAAAGTATCGGGATGAGTTGAAAACCAAGCGAATGATATCTTCTGACACACCATTAATGTCTGCGAAGAAGATGAGAGAGGCTCAAGCT CTCAG CAAAACACCATACCTTGTTTTAAGTGGCAATGCAAAATCAGGTCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGGGAGTCTGACGCCCATGCTTGGGGCCAAAAAGGTCGAGCACTTTCTGGGCATCAAACGAAGCGCCCAGGGTGGAGGATTGCCTCCACCACCTCCAAAGAAGCCAAAGAACTGAACCTGCAGTGGACTTGGCTGAGTAGAAATCAGGTGTTTTTTAGTGCATTTGCTACTGTAGGTTTGGAGCAGATTTCGAGGGACCTACACCAGCAGATACCAACGACCCATGAAGCAGCCCCAAATGAGTTAACATGTAAGAACCTGTGAATTTTTATTCCAAGTTGATTATGTTAACATTCTGACATGGGCGATGTAACTTTTGTAACCAGCTGTACTTACAAGGCTGCACCACAAATGCAGTCAGAACTACAGAGGTGGATTTAAAAAAAAAAAAAAAAAAAAGGCCACAT]
[+] EMBL AU057904 [ TCGCATAGAAAGAATTGATGAATTTGGTCGAGTGATGACACCGAA GAGGCATTTCGGGATCTTTCACACAAATTCCATGGC AAGG CACCTGGTAAAATGAAGCAGGAACGGCGCCAAAAAAAGTATCGGGATGAGTTGAAAACCAAGCGAATGATATCTTCTGACACACCATTAATGTCTGCGGAGAAGATGAGAGAGGCTCAAGCT CTCAG CAAAACACCATACCTTGTTTTAAGTGGCAATGCAAAATCAGGTCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGGGAGTCTGACGCCCATGCTTGGGGCCAAAAAGGTCGAGCACTTTCTGGGCATCAAACGAAGCGCCCAGGGTGGAGGATTGCCTCCACCACCTCCAAAGAAGCCAAAGAACTGAACCTGCAGTGGACTTGGCTGAGTAGAAATCAGGTGTTTTTTAGTGCATTTGCTACTGTAGGTTTGGAGCAGATT ]
[+] EMBL CA765873 [ ggggGAAAGAATTGATGAATTTGGTCGAGTGATGACACCGAAGGAGGCATTTCGGGATCTTTCACACAAATTCCATGGC AAGG CACCTGGTAAAATGAAGCAGGAACGGCGCCAAAAAAAGTATCGGGATGAGTTGAAAACCAAGCGAATGATATCTTCTGACACACCATTAATGTCTGCGGAGAAGATGAGAGAGGCTCAAGCT CTCAG CAAAACACCATACCTTGTTTTAAGTGGCAATGCAAAATCAGGTCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGGGAGTCTGACGCCCATGCTTGGGGCCAAAAAGGTCGAGCACTTTCTGGGCATCAAACGAAGCGCCCAGGGTGGAGGATTGCCTCCACCACCTCCAAAGAAGCCAAAGAACTGAACCTGCAGTGGACTTGGCTGAGTAGAAATCAGGTGGTTTTTAGTGCATTTGCTACTGTAGGTTTGGAGCAGATTTCGAGGGACCTACACCAGCAGATACCAACGACCCATGAAGCAGCCCCAAATGAGTTAACATGTAAGAACCTGTGAATTTTTATTCCAAGTTGATTATGTTAACATTCTGACATGGGCGATGTAACTTTTGTAACCAGCTGTACTTACAAGGCTGCACCACAAATGCAGTCAGAACTACAGAG ]
[+] EMBL AU057905 [ TCGAGTGTTGCCACCGAAGGAGGCATTTC GGATCTTTCACACAAATTCCATGGCNAAGGCCACCTGGTAAAATGAAGCAGGAACGGCGCCAAAAAAAGTANCGGGATGAGTTGAAACCCAAGCGAATGATATCTTCTGACACACCATTAATGTCTGCGGAGAAGATGAGAGAGGCTCAAGCT CTCAG CAAAACACCATACCTTGTTTTAAGTGGCAATGCAAAATCAGGTCAAACGAGCGATNCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGGGAGTCTGACGCCCATGCTTGGGGCCAAAAAGGTCGAGCACTTTCTGGGCATCAAACGAAGCGCCCAGGGTGGAGGATTGCCTCCACCACCTCCAAAGAAGCCAAAGAACTGAACCTGCAGTGGACTTGGCTGAGTAGAAATCAGGTGTTTTTTAGTGCATTTGCTACTGTAGGTTTGGAGCAGATTTCGAGGGACCTACACCAGCAGATACCAACGACCCATGAAGCAGCCCCAAATGAGTTAACATGTAAGAACCTGTGAATTTTTATTCCAAGTTGATTATGTTAACATTCTGACATGGGCGATGTAACTTTTGTAACCAGCTGTACTTACAAGGCTGCACCACAAATGCAGTCAGAACTACAGAGGTGGATTTAAAAAAAAAA ]
[+] EMBL BI805253 [ GAAGCAGGTTCGGCGCC AAGTAAGTATC GGATGAGTTG AAACC AGCGAATGATATCTTCTGACACACCATTAATGTCTGCGGAGAAGATGAGAGAGGCTCAAGCTGCTCAGCCTATAC CCATACCTTGTTTTATGTGGCAATGCCAAATCAGGTCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGGGAGTCTGACGCCCATGCTT GGGCC AAAAGTTCGAGCACTTTCTGGGCATCAAACGAAGCGCCCAGGGTGGAGGATTGCCTCCACCACCTCCAAAGAAGCCAAAGAACTGAACCTGCAGTGGACTTGGCTGAGTAGAAATCAGGTGGTTTTTAGTGCATTTGCTACTGTAGGTTTGGAGCAGATTTCGAGGGACCTACACCAGCAGATACC ACGACCCATGAAGCAGCCCCAAATGAGTTAACATGTAAGAACCTGTGAATTTTTATTCCAAGTTGATTATGTTAACATTCTGACATGGGCGATGTAACTTTTGTAACCAGCTGTACTTACAAGGCTGCACCAC AATGCAGTCAGAACTACAGAGGTGGATTTAAAAAAAAAA ]
consensusID : consensus_13938#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 686 fasta sequence
[GGCAAAGCCCCTTGTAAAATTAAGCAGGAAGGGCCCCCAAANAAAGGTTCGGGTTGAGTTGAAAACCCAGCGAATGATATTTTTTGCCCCCCCATTAATGTCTTCGGAGAAAATGAGAGAGGCTCAAGCTCTTAGCAAAACACCATACCTTGTTTTAAGTGGCAATGCAAAATCAGGTCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGGGAGTTTGACGCCCATGCTTGGGGCCAAAAAGGTCGAGCACTTTTTGGGCATCAAACGAAGCGCCCAGGGTGGAGGATTGCCTCCAC-CACCTCCAAAGAAGCCAAAGAACTGAACCTGCAGTGGACTTGGCTGAGTAGAAATCAGGTGGTTTTTAGTGCATTTGCTACTGTAGGTTTGGAGCAGATTTCGAGGGACCTACACCAGCAGATACCAACGACCCATGAAGCAGCCCCAAATGAGTTAACATGTAAGAACCTGTGAATTTTTATTCCAAGTTGATTATGTTAACATTTTGACATGGGCGATGTAACTTTTGTAACCAGCTGTACTTACAAGGCTGCCCCCCAAATGCAGTCAGAACTACAGAGGTGGATTTAAAATGTT---GTGTCTCCCCAAATTTACATTGGTTGTTTAAGCTGGACATACAAGTTTCGATTGCTGAAAAAAAAAAAAAAAAA]
[-] EMBL CA762373 [GGCAAAGCCCCTTGTAAAATTAAGCAGGAAGGGCCCCCAAANAAAGGTTCGGGTTGAGTTGAAAACCCAGCGAATGATATTTTTTGCCCCCCCATTAATGTCTTCGGAGAAAATGAGAGAGGCTCAAGCTCTTAGCAAAACACCATACCTTGTTTTAAGTGGCAATGCAAAATCAGGTCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGGGAGTTTTACGCCCATGCTTGGGGCCAAAAAGGTCGAGCCCTTTTTGGGCATCAAACGAAGCGCCCAGGGTGGAGGATTGCCTCCCC CACCTCCAAAGAAGCCAAAGAACTGAACCTGCAGTGGACTTGGCTGAGTAGAAATCAGGTGGTTTTTAGTGCATTTGCTACCGTAGGTTTGGAGCAGATTTCGAGGGACCTTCACCAGCAGATACCAACGACCCATGAAGCAGCCCCAAATGAGTTAACATGTAAGAACCTGTGAATTTTTATTCCAAGTTGATTATGTTAACATTTTGACATGGGCGATGTAACTTTTGTAACCAGCTGTACTTACAAGGGTGCCCCCCAAATGCAGTCAGAACTACAGAGGTGGATTTAAAATGTT GTGTCTCCCCAAATTTACATTGGTTGTTTAAGCTGGACATACAAGTTTCGATTGCTGAAAAAAAAAAAAAAAA ]
[-] EMBL CA762374 [ CCCATTAATTTTTGCGGAGAAGATGAGAGAGGCTCAAGCTCTCACCAAAACACCATACCTTGTTTTAAGTGGCAATGCAAAATCAGGTCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGGGAGTCTGACGCCCATGCTTGGGGCCAAAAAGGTCGAGCACTTTCTGGGCATCAAACGAAGCGCCCAGGGTGGAGGATTGCCTCCAC CACCTCCAAAGAAGCCAAAGAACTGAACCTGCAGTGGACTTGGCTGAGTAGAAATCAGGTGGTTTTTAGTGCATTTGCTACTGTAGGTTTGGAGCAGATTTCGAGGGACCTACACCAGCAGATACCAACGACCCATGAAGCAGCCCCAAATGAGTTAACATGTAAGAACCTGTGAATTTTTATTCCAAGTTGATTATGTTAACATTTTGACATGGGCGATGTAACTTTTGTAACCAGCTGTACTTACAAGGCTGCCCCCCAAATGCAGTCAGAATTACAGAGGTGGATTTAAAATATT GTGTCTCCCCAAATTTACATTGGTTGTTTAAGCTGGACATACAAGTTAAAA AAAAAAAAAAAAAAAAA]
[-] EMBL CB637355 [ GCAAAACACCATACCTTGTTTTAAGTGGCAATGCAAAATCAGGTCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGGGAGTTTGACGCCCATGCTTGGGGCCAAAAAGGTCGAGCACTTTTTGGGCATCAAACGAAGCGCCCAGGGTGGAGGATTGCCTCCAC CACCTCCAAAGAAGCCAAAGAACTGAACCTGCAGTGGACTTGGCTGAGTAGAAATCAGGTGTTTTTTAGTGCATTTGCTACTGTAGGTTTGGAGCAGATTTCGAGGGACCTACACCAGCAGATACCAACGACCCATGAAGCAGCCCCAAATGAGTTAACATGTAAGAACCTGTGAATTTTTATTCCAAGTTGATTATGTTAACATTCTGACATGGGCGATGTAACTTTTGTAACCAGCTGTACTTACAAGGCTGCCCCACAAATGCAGTCAGAACTACAGAGGTGGATTTAAAATGTTGTCGTGTCTCCACAAATCTACATTGGTTGTTTAAGCTGGAC ]
[-] EMBL CB638774 [ TGCAAAATCAGGTCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGGGAGTCTGACGCCCATGCTTGGGGCCAAAAAGGTCGAGCACTTTTTGGGCATCAAACGAAGCGCCCAGGGTGGAGGATTGCCTCCACNCACCTCCAAAGAAGCCAAAGAACTGAACCTGCAGTGGACTTGGCTGAGTAGAAATCAGGTGTTTTTTAGTGCATTTGCTACTGTAGGTTTGGAGCAGATTTCGAGGGACCTACACCAGCAGATACCAACGACCCATGAAGCAGCCCCAAATGAGTTAACATGTAAGAACCTGTGAATTTTTATTCCAAGTTGATTATGTTAACATTCTGACATGGGCGATGTAACTTTTGTAACCAGCTGTACTTACAAGGCTGCACCACAAATGCAGTCAGAACTACAGAGGTGGATTTAAAATGTTGTCGTGTCTCCACAAATCTACATTGGTTGTTTAAGCTGGAC ]
consensusID : consensus_13938#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 591 fasta sequence
[GANTTTTTGAACCATATTTNGGGGNGNGGGGGTNANTTTANAAAACCCNACCTNTTTAGNGCATGCAATTCGTNAAGGGGNNNCCGNGTTTGTANAGNGNGAAGNCCCCNTGGGTTTGAANCCATGTTGGGCCAAAAAGTTGGGCATTTTTTGGGCNTCAAAGGAGCCCCAGGGTGGNGGTTGCCTTCCACCACCTCCAAAGGAGCCAAAGAACTGAACCTGCAGTGGANTTGGCTGAGTAGAAATCAGGTGTTTTTAGTGCATTTGCTACTGTAGGTTTGGAGCAGATTTCGAGGGACCTACACCAGCAGATACCAACGACCCATGAAGCAGCCCCAAATGAGTTAACATGTAAGAACCTGTGAATTTTTATTCCAAGTTGATTATGTTAACATTCTGACATGGGCGATGTAACTTTTGTAACCAGCTGTACTTACAAGGCTGCACCACAAATGCAGTCAGAACTACAGAGGTGGATTTAAAATGTTGTCGTGTCTCCACAAATCTACATTGGTTGTTTAAGCTGGACATACAAGTTACGATTGCTGAGTGCTGACAAACTTTATAGTGTTTTTCAAAAAAAAAAAAAAA]
[-] EMBL AA753257 [GANTTTTTGAACCATATTTNGGGGNGNGGGGGTNANTTTANAAAACCCNACCTNTTTAGNGCATGCAATTCGTNAAGGGGNNNCCGNGTTTGTANAGNGNGAAGNCCCCNTGGGTTTGAANCCATGTTGGGCCAAAAAGTTGGGCATTTTTTGGGCNTCAAAGGAGCCCCAGGGTGGNGGTTGCCTTCCACCACCTCCAAAGGAGCCAAAGAACTGAACCTGCAGTGGANTTGGCTGAGTAGAAATCAGGTGTTTTTAGTGCATTTGCTACTGTAGGTTTGGAGCAGATTTCGAGGGACCTACACCAGCAGATACCAACGACCCATGAAGCAGCCCCAAATGAGTTAACATGTAAGAACCTGTGAATTTTTATTCCAAGTTGATTATGTTAACATTCTGACATGGGCGATGTAACTTTTGTAACCAGCTGTACTTACAAGGCTGCACCACAAATGCAGTCAGAACTACAGAGGTGGATTTAAAATGTTGTCGTGTCTCCACAAATCTACATTGGTTGTTTAAGCTGGACATACAAGTTACGATTGCTGAGTGCTGACAAACTTTATAGTGTTTTTCAAAAAAAAAAAAAAA]
[+] EMBL OSC2940A [ TGGAGCAGATTTCGAGGGACCTACACCAGCAGATACCAACGACCCATGAAGCAGCCCCAAATGAGTTAACATGTAAGAACCTGTGAATTTTTATTCCAAGTTGATTATGTTAACATTCTGACATGGGCGATGTAACTTTTGTAACCAGCTGTACTTACAAGGCTGCACCACAAATGCAGTCAGAACTACAGAGGTGGATTTAAAATGTTGTCGTGTCTCCACAAATCTAaaaa ]
consensusID : consensus_13938#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 524 fasta sequence
[AAACGAGCGCCCAGGTGGAGATTGCCTCCACCACCTCCAAAGAACCCAAGAACTGAACCTGCAGTGGACTTGGCCTGAGTAGAAATCAGGTGTTTTTAGTGCATTTGCTACTGTAGGTTTGGACAGATTTCGAGGGACCTACACCAGCAGATACCTACGACCCATGAAGCAGCCCCAAATGAGTTAACATCTGTACTTACAAGGCTGCACCACAATCAGTCAGAACTACAGAGGTGGATTTAAAATGTTGTCGTGTCTCCACAATCTACATTGGTTGTTTAAGCTGGACATACAAGTTACGATTGCTGAGTGCTGACAAACTTTATAGTGTTTTTCACGTGCTCTGTCCCATAGAAAAACATCCTAGTATATGATGTGATACATTTTAGTACCATAAATTTGGACATGAGTAGTTAAAATGTGTAACATTCTGCCTCCCAAAAACATGTGTAACATTCTGTACTAGATTTGTTTTCTGGGACAGAAGGAGTATATTGGGGAAAGAGGGAGTACGTTGACAAAAA]
[+] EMBL BI811977 [AAACGAGCGCCCAGGTGGAGATTGCCTCCACCACCTCCAAAGAACCCAAGAACTGAACCTGCAGTGGACTTGGCCTGAGTAGAAATCAGGTGTTTTTAGTGCATTTGCTACTGTAGGTTTGGACAGATTTCGAGGGACCTACACCAGCAGATACCTACGACCCATGAAGCAGCCCCAAATGAGTTAACATCTGTACTTACAAGGCTGCACCACAATCAGTCAGAACTACAGAGGTGGATTTAAAATGTTGTCGTGTCTCCACAATCTACATTGGTTGTTTAAGCTGGACATACAAGTTACGATTGCTGAGTGCTGACAAACTTTATAGTGTTTTTCACGTGCTCTGTCCCATAGAAAAACATCCTAGTATATGATGTGATACATTTTAGTACCATAAATTTGGACATGAGTAGTTAAAATGTGTAACATTCTGCCTCCCAAAAACATGTGTAACATTCTGTACTAGATTTGTTTTCTGGGACAGAAGGAGTATATTGGGGAAAGAGGGAGTACGTTGACAAAAA]
consensusID : consensus_13938#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 339 fasta sequence
[TTGCCTCCACCACCTCSAAAGAAGCCGAAGAACTGAACCTGCAGTTGACTTTGCTGAGTAGAATTAGGTTGGTTTTAGTTCATTTTCTACTGTTGGGTTTGAGCAGATTTTGAGGGACCTTCACCAGCAGATTCCCACCGACCCATTAAGCGGCCCGAATTTAGGTTACCTTCTGTCCTAACAAGAGTGCACCACAATATGGTGTGAGAACTAGAGAGTGTGTATTTAATATGTGTGTTGTGTCTCCACAAATCTATATAGGTGTGTTTAGCTGGATATACAGTACGATAGCTGAGTGCTGACAACTTATGTGTTTAACGCGATTGTCTATAAAAACAA]
[+] EMBL OS37992 [TTGCCTCCACCACCTCSAAAGAAGCCGAAGAACTGAACCTGCAGTTGACTTTGCTGAGTAGAATTAGGTTGGTTTTAGTTCATTTTCTACTGTTGGGTTTGAGCAGATTTTGAGGGACCTTCACCAGCAGATTCCCACCGACCCATTAAGCGGCCCGAATTTAGGTTACCTTCTGTCCTAACAAGAGTGCACCACAATATGGTGTGAGAACTAGAGAGTGTGTATTTAATATGTGTGTTGTGTCTCCACAAATCTATATAGGTGTGTTTAGCTGGATATACAGTACGATAGCTGAGTGCTGACAACTTATGTGTTTAACGCGATTGTCTATAAAAACAA]
consensusID : consensus_13938#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 215 fasta sequence
[GGAGAAGATGAGAGAGGCTCAAGCTCTCAGCAAAACACCATACCTTGTTTTATGTGGCAATGCAAAATCGGGTCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGGATTGCCTCCACCACCTCCAAAGAAGCCAAAGAACTGAACCTGCAGTGGACTTGGCTGAGTAGAAATCAGGTGGTTTTTAGTGCATTTGCTACTGTAGGTTTGGAG]
[-] EMBL CB238430 [GGAGAAGATGAGAGAGGCTCAAGCTCTCAGCAAAACACCATACCTTGTTTTATGTGGCAATGCAAAATCGGGTCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGGATTGCCTCCACCACCTCCAAAGAAGCCAAAGAACTGAACCTGCAGTGGACTTGGCTGAGTAGAAATCAGGTGGTTTTTAGTGCATTTGCTACTGTAGGTTTGGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13938#3 ------------------------------------------------------------
consensus_13938#4 ------------------------------------------------------------
consensus_13938#2 ------------------------------------------------------------
consensus_13938#0 TTCCTCGAGCACTGTTGGCCTACTGGAAAGGCTGAAGAGGCATCAAAAGCATTGCGCCCG 60
consensus_13938#5 ------------------------------------------------------------
consensus_13938#1 ------------------------------------------------------------
consensus_13938#3 ------------------------------------------------------------
consensus_13938#4 ------------------------------------------------------------
consensus_13938#2 ------------------------------------------------------------
consensus_13938#0 GAGAAAAATATTTCTGGTAAACACGCTGAATCTGAAGAACTAGTTTTTGGTGAAGATTAC 120
consensus_13938#5 ------------------------------------------------------------
consensus_13938#1 ------------------------------------------------------------
consensus_13938#3 ------------------------------------------------------------
consensus_13938#4 ------------------------------------------------------------
consensus_13938#2 ------------------------------------------------------------
consensus_13938#0 GAAGATTTGCAGAAATCTCTGGAGCAAGCAAGGAAATTAGCTCTAAGGAAACAGGAAGAG 180
consensus_13938#5 ------------------------------------------------------------
consensus_13938#1 ------------------------------------------------------------
consensus_13938#3 ------------------------------------------------------------
consensus_13938#4 ------------------------------------------------------------
consensus_13938#2 ------------------------------------------------------------
consensus_13938#0 ACTGCTGCATCTGGTCCTCTGGCTGTAGCAGAACTGGCTACTGCAAGAATAGGTCAAAAA 240
consensus_13938#5 ------------------------------------------------------------
consensus_13938#1 ------------------------------------------------------------
consensus_13938#3 ------------------------------------------------------------
consensus_13938#4 ------------------------------------------------------------
consensus_13938#2 ------------------------------------------------------------
consensus_13938#0 GATGCAGATGCTGCCGAAGGAGATGCACAACAAAATAAGGTTGTTATCACAGAGATGGAA 300
consensus_13938#5 ------------------------------------------------------------
consensus_13938#1 ------------------------------------------------------------
consensus_13938#3 ------------------------------------------------------------
consensus_13938#4 ------------------------------------------------------------
consensus_13938#2 ------------------------------------------------------------
consensus_13938#0 GAGTTTGTGTGGGGCCTACAGTTGAATGAAGAGACTCGCAAACCAGAAGCAGAAGATGTT 360
consensus_13938#5 ------------------------------------------------------------
consensus_13938#1 ------------------------------------------------------------
consensus_13938#3 ------------------------------------------------------------
consensus_13938#4 ------------------------------------------------------------
consensus_13938#2 ------------------------------------------------------------
consensus_13938#0 TTTATGGATGAAGATGATGACATGATCATGTCAGACACTGTGGCAAAAGATGACATGAGT 420
consensus_13938#5 ------------------------------------------------------------
consensus_13938#1 ------------------------------------------------------------
consensus_13938#3 ------------------------------------------------------------
consensus_13938#4 ------------------------------------------------------------
consensus_13938#2 ------------------------------------------------------------
consensus_13938#0 GGGCTGGCCGTGGTCAAAGAGGAAACTAGCGTTGAAGTCCCAGTAAAGAATGAAGAGGAA 480
consensus_13938#5 ------------------------------------------------------------
consensus_13938#1 ------------------------------------------------------------
consensus_13938#3 ------------------------------------------------------------
consensus_13938#4 ------------------------------------------------------------
consensus_13938#2 ------------------------------------------------------------
consensus_13938#0 GAAGAGCTAAAACCAGATGAGATTGTACATGGAGCTGCAGTTGGCAAGGGTTTGGCTGGT 540
consensus_13938#5 ------------------------------------------------------------
consensus_13938#1 ------------------------------------------------------------
consensus_13938#3 ------------------------------------------------------------
consensus_13938#4 ------------------------------------------------------------
consensus_13938#2 ------------------------------------------------------------
consensus_13938#0 GCTTTGAAGTTTCTGAAGGAACGAGGAACCCTCAATGAGGGCACAGATTGGGGAGGCAGA 600
consensus_13938#5 ------------------------------------------------------------
consensus_13938#1 ------------------------------------------------------------
consensus_13938#3 ------------------------------------------------------------
consensus_13938#4 ------------------------------------------------------------
consensus_13938#2 ------------------------------------------------------------
consensus_13938#0 ACCACAGATAAGAAGAAAAGCAAGCTTGCTGGTATTGAGGATGGACCAAAAGATATTCGC 660
consensus_13938#5 ------------------------------------------------------------
consensus_13938#1 ------------------------------------------------------------
consensus_13938#3 ------------------------------------------------------------
consensus_13938#4 ------------------------------------------------------------
consensus_13938#2 ------------------------------------------------------------
consensus_13938#0 ATAGAAAGAATTGATGAATTTGGTCGAGTGATGACACCGAAGGAGGCATTTCGGGATCTT 720
consensus_13938#5 ------------------------------------------------------------
consensus_13938#1 ------------------------------------------------------------
consensus_13938#3 ------------------------------------------------------------
consensus_13938#4 ------------------------------------------------------------
consensus_13938#2 ------------------------------------------------------------
consensus_13938#0 TCACACAAATTCCATGGCAAGGCACCTGGTAAAATGAAGCAGGAACGGCGCC-AAAAAAA 779
consensus_13938#5 ------------------------------------------------------------
consensus_13938#1 ---------------GGCAAAGCCCCTTGTAAAATTAAGCAGGAAGGGCCCCCAAANAAA 45
consensus_13938#3 ------------------------------------------------------------
consensus_13938#4 ------------------------------------------------------------
consensus_13938#2 ------------------------------------------------------------
consensus_13938#0 GTATCGGGATGAGTTGAAAACCAAGCGAATGATATCTTCTGACACACCATTAATGTCTGC 839
consensus_13938#5 ------------------------------------------------------------
consensus_13938#1 GGTTCGGGTTGAGTTGAAAACCCAGCGAATGATATTTTTTGCCCCCCCATTAATGTCTTC 105
consensus_13938#3 ------------------------------------------------------------
consensus_13938#4 ------------------------------------------------------------
consensus_13938#2 ------------GANTTTTTGAACCATATTTNGGGGNGNGGGGGTNANTTTANAAAACCC 48
consensus_13938#0 GGAGAAGATGAGAGAGGCTCAAGCTCTCAGCAAAACACCATACCTTGTTTTAAGTGGCAA 899
consensus_13938#5 GGAGAAGATGAGAGAGGCTCAAGCTCTCAGCAAAACACCATACCTTGTTTTATGTGGCAA 60
consensus_13938#1 GGAGAAAATGAGAGAGGCTCAAGCTCTTAGCAAAACACCATACCTTGTTTTAAGTGGCAA 165
consensus_13938#3 ------------------------------------------------------------
consensus_13938#4 ------------------------------------------------------------
consensus_13938#2 NACCTNTTTAGNGCATGCAATTCGTNAAGGGGNNNCCGNGTTTGTANAGNGNGAAGNCCC 108
consensus_13938#0 TGCAAAATCAGGTCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCC 959
consensus_13938#5 TGCAAAATCGGGTCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAG----------- 109
consensus_13938#1 TGCAAAATCAGGTCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCC 225
consensus_13938#3 -------------------------------------------------------AAACG 5
consensus_13938#4 ------------------------------------------------------------
consensus_13938#2 CNTGGGTTTGAANCCA----TGTTGGGCCAAAAAGTTGGGCATTTTTTGGGCNTCAAAGG 164
consensus_13938#0 TGGGAGTCTGACGCCCATGCTTGGGGCCAAAAAGGTCGAGCACTTTCTGGGCATCAAACG 1019
consensus_13938#5 ------------------------------------------------------------
consensus_13938#1 TGGGAGTTTGACGCCCATGCTTGGGGCCAAAAAGGTCGAGCACTTTTTGGGCATCAAACG 285
consensus_13938#3 A---GCGCCCAGGTGGAGATTGCCT-CCACCACCTCCAAAGAACCC-AAGAACTGAACCT 60
consensus_13938#4 -------------------TTGCCT-CCACCACCTCSAAAGAAGCCGAAGAACTGAACCT 40
consensus_13938#2 A---GCCCCAGGGTGGNGGTTGCCTTCCACCACCTCCAAAGGAGCCAAAGAACTGAACCT 221
consensus_13938#0 AAGCGCCCAGGGTGGAGGATTGCCT-CCACCACCTCCAAAGAAGCCAAAGAACTGAACCT 1078
consensus_13938#5 -----------------GATTGCCT-CCACCACCTCCAAAGAAGCCAAAGAACTGAACCT 151
consensus_13938#1 AAGCGCCCAGGGTGGAGGATTGCCT-CCACCACCTCCAAAGAAGCCAAAGAACTGAACCT 344
****** ********** **** * ** *************
consensus_13938#3 GCAGTGGACTTGGCCTGAGTAGAAATCAGGTG-TTTTTAGTGCATTTGCTACTGT-AGGT 118
consensus_13938#4 GCAGTTGACTTTGC-TGAGTAGAATTAGGTTG-GTTTTAGTTCATTTTCTACTGTTGGGT 98
consensus_13938#2 GCAGTGGANTTGGC-TGAGTAGAAATCAGGTG-TTTTTAGTGCATTTGCTACTGTAGGTT 279
consensus_13938#0 GCAGTGGACTTGGC-TGAGTAGAAATCAGGTGTTTTTTAGTGCATTTGCTACTGTAGGTT 1137
consensus_13938#5 GCAGTGGACTTGGC-TGAGTAGAAATCAGGTGGTTTTTAGTGCATTTGCTACTGTAGGTT 210
consensus_13938#1 GCAGTGGACTTGGC-TGAGTAGAAATCAGGTGGTTTTTAGTGCATTTGCTACTGTAGGTT 403
***** ** ** ** ********* * * ** ******* ***** ******* * *
consensus_13938#3 TTGGACAGATTTCGAGGGACCTACACCAGCAGATACCTAC-GACCCATGAAGCAGCCCCA 177
consensus_13938#4 TTGAGCAGATTTTGAGGGACCTTCACCAGCAGATTCCCACCGACCCATTAAGCGGCCCGA 158
consensus_13938#2 TGGAGCAGATTTCGAGGGACCTACACCAGCAGATACCAAC-GACCCATGAAGCAGCCCCA 338
consensus_13938#0 TGGAGCAGATTTCGAGGGACCTACACCAGCAGATACCAAC-GACCCATGAAGCAGCCCCA 1196
consensus_13938#5 TGGAG------------------------------------------------------- 215
consensus_13938#1 TGGAGCAGATTTCGAGGGACCTACACCAGCAGATACCAAC-GACCCATGAAGCAGCCCCA 462
* *
consensus_13938#3 AATGAG--------------------------------------------TTAACAT--- 190
consensus_13938#4 ATTTAGG-------------------------------------------TTACCTT--- 172
consensus_13938#2 AATGAGTTAACATGTAAGAACCTGTGAATTTTTATTCCAAGTTGATTATGTTAACATTCT 398
consensus_13938#0 AATGAGTTAACATGTAAGAACCTGTGAATTTTTATTCCAAGTTGATTATGTTAACATTCT 1256
consensus_13938#5 ------------------------------------------------------------
consensus_13938#1 AATGAGTTAACATGTAAGAACCTGTGAATTTTTATTCCAAGTTGATTATGTTAACATTTT 522
consensus_13938#3 -----------------------------CTGTACTTACAAGGCTGCACCACAATCAG-- 219
consensus_13938#4 -----------------------------CTGTCCTAACAAGAGTGCACCACAATATGGT 203
consensus_13938#2 GACATGGGCGATGTAACTTTTGTAACCAGCTGTACTTACAAGGCTGCACCACAA-ATGCA 457
consensus_13938#0 GACATGGGCGATGTAACTTTTGTAACCAGCTGTACTTACAAGGCTGCACCACAA-ATGCA 1315
consensus_13938#5 ------------------------------------------------------------
consensus_13938#1 GACATGGGCGATGTAACTTTTGTAACCAGCTGTACTTACAAGGCTGCCCCCCAA-ATGCA 581
consensus_13938#3 -TCAGAACTACAGAG-GTGGATTTAAAATGT-TGTCGTGTCTCCACAA-TCTACATTGGT 275
consensus_13938#4 GTGAGAACTAGAGAGTGTGTATTTAATATGTGTGTTGTGTCTCCACAAATCTATATAGGT 263
consensus_13938#2 GTCAGAACTACAGAG-GTGGATTTAAAATGT-TGTCGTGTCTCCACAAATCTACATTGGT 515
consensus_13938#0 GTCAGAACTACAGAG-GTGGATTTAAAAAAA----AAAAAAAAAAAAAGGCCACAT---- 1366
consensus_13938#5 ------------------------------------------------------------
consensus_13938#1 GTCAGAACTACAGAG-GTGGATTTAAAATGT----TGTGTCTCCCCAAATTTACATTGGT 636
consensus_13938#3 TGTTTAAGCTGGACATACAAGTTACGATTGCTGAGTGCTGACAAACTTTATAGTGTTTTT 335
consensus_13938#4 GTGTTTAGCTGGATATACAG--TACGATAGCTGAGTGCTGACAACTT-----ATGTGTTT 316
consensus_13938#2 TGTTTAAGCTGGACATACAAGTTACGATTGCTGAGTGCTGACAAACTTTATAGTGTTTTT 575
consensus_13938#0 ------------------------------------------------------------
consensus_13938#5 ------------------------------------------------------------
consensus_13938#1 TGTTTAAGCTGGACATACAAGTTTCGATTGCTGAAAAAAAAAAAAAAAAA---------- 686
consensus_13938#3 CACGTGCTCTGTCCCATAGAAAAACATCCTAGTATATGATGTGATACATTTTAGTACCAT 395
consensus_13938#4 AACGCGAT-TGTC---TATAAAAACAA--------------------------------- 339
consensus_13938#2 CAAAAAAA--------AAAAAAAA------------------------------------ 591
consensus_13938#0 ------------------------------------------------------------
consensus_13938#5 ------------------------------------------------------------
consensus_13938#1 ------------------------------------------------------------
consensus_13938#3 AAATTTGGACATGAGTAGTTAAAATGTGTAACATTCTGCCTCCCAAAAACATGTGTAACA 455
consensus_13938#4 ------------------------------------------------------------
consensus_13938#2 ------------------------------------------------------------
consensus_13938#0 ------------------------------------------------------------
consensus_13938#5 ------------------------------------------------------------
consensus_13938#1 ------------------------------------------------------------
consensus_13938#3 TTCTGTACTAGATTTGTTTTCTGGGACAGAAGGAGTATATTGGGGAAAGAGGGAGTACGT 515
consensus_13938#4 ------------------------------------------------------------
consensus_13938#2 ------------------------------------------------------------
consensus_13938#0 ------------------------------------------------------------
consensus_13938#5 ------------------------------------------------------------
consensus_13938#1 ------------------------------------------------------------
consensus_13938#3 TGACAAAAA 524
consensus_13938#4 ---------
consensus_13938#2 ---------
consensus_13938#0 ---------
consensus_13938#5 ---------
consensus_13938#1 ---------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||