cluster # 13947

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Oryza sativa
cluster # 13947 cluster # 13947 Sequences # 14 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13947#0 length = 1426 sequences # 10
consensus_13947#1 length = 545 sequences # 2

consensus_13947#2 length = 289 sequences # 1
consensus_13947#3 length = 251 sequences # 1

consensusID : consensus_13947#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1426
fasta sequence

                              [TGCTTATCAGAAGATTCTCTCGTCCATTCCTGAGTTCTCCGGGTTTGGAAGGCTCTTCAAGTCCTCAGAACCTGTGGAGCTGACAGAGGCGGAGACTGAATATGCGATTAATGTGGTTAAGCACATATACAGTAGCCATGTTGTGTTGCAGTACAACTGTACAAACACTATACCCGAACAACTGCTAGAAAATGTGACTGTTTATGTTGATGCCACTGATGCTGAGGAATTTTCAGAAGTTTGTTCAAAGCCACTTAGAAGTTTGCCTTATGATTCACCTGGGCAAATTTTTGTTGCTTTTGAAAAGCCAGAACATGTTCCTGCTACTGGGAAATTTTCAAATGTGCTGAAGTTTATTGTTAAAGAGGTTGACACATCTACAGGGGAAGTTGATGAGGATGGTGTGGAGGATGAATACCAGATCGAAGACCTGGAAATTGTTTCGGCTGATTACATGCTGAGGGTTGCAGTCTCCAACT-TCAGGAATGCCTGGGAAAATATGGACCCAGAAAGTGAG-CGTGTCGATGAGTATGGACTTGGTGTTAGAGAGAGCTTGGCTGAGGCTGTGAGTGCTGTCATTAGTATCCTTGGTATGCAGCCTTGTGAGGGCACTGAGGTTGTACCAAAGAATGCAAGATCGCACACTTGCCTGCTGTCTGGTGTGTTCATCGGCGACGCCA-AGGTTCTTGTCAGGCTATCGTTTGGACTGAGCGGGCCCA-AGGAAGTGGCGATGAAGCTTGCCGTCAGGTCAGATGATCCCGAAGTCAGTGACAAGAT-CCACGAGATTGTTGCCA-GCGGCTAAAGCGGGGCGCCCTGCCCCTGATATAAAATGATGTAGAGCCGGTAGATAGTCTTTTTCACCTTTCGTGATAAAATAGTTATACTACACCTATTGATGCCTCACTTTTTACAGACAACACTCCTGCCTCGTGCGTATTATTGCTCAGGTAGTGTATTAGTGTATCAGATCATGTCCCCTTGTGTAGTTGTGTTCACCGCTCGGTTTGATTTTTT-GTTTCTTTTCTTTGGACAGTTTGTTTACTTAATGTGGATATAATTCATTGGTGA----A-----AAAAAAAAAAAAGAATAATAATTAATCAATTCTCTTGTGTTATCAATATTTTCAGGGGGGGCCGGGTCCCAATCGCCTTAATGAGTCTATTACCCCCCTAATGGCCGCTTTTAAACGTCGGACGGAAACCTGGGTTCCAAATAAAGCCTGAAAACACCTTTGCGCAACTGCGTAAAAAAGAGCCACACGACCCTTATAATATTGCAACTCTAGCAAAGGACCCCCTTTACGCACTCCGCGCGGGTGGGGATACCGACGGATATAATAAAGGCCTGACGCTAATTGAATTGCTTAATTCTGACTAAGTGAGACAGAGGCAAGAGCTCTCTCATACATTTTTCATGCATCTACAAATTT]

[+] EMBL AU183883             [TGCTTATCAGAAGATTCTCTCGTCCATTCCTGAGTTCTCCGGGTTTGGAAGGCTCTTCAAGTCCTCAGAACCTGTGGAGCTGACAGAGGCGGAGACTGAATATGCGATTAATGTGGTTAAGCACATATACAGTAGCCATGTTGTGTTGCAGTACAACTGTACAAACACTATACCCGAACAACTGCTAGAAAATGTGACTGTTTATGTTGATGCCACTGATGCTGAGGAATTTTCAGAAGTTTGTTCAAAGCCACTTAGAAGTTTGCCTTATGATTCACCTGGGCAAATTTTTGTTGCTTTTGAAAAGCCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BI118861             [                                                                                                                                                                         ATACCCGAACAACTGCTAGAAAATGTGACTGTTTATGTTGATGCCACTGATGCTGAGGAATTTTCAGAAGTTTGTTCAAAGCCACTTAGAAGTTTGCCTTATGATTCACCTGGGCAAATTTTTGTTGCTTTTGAAAAGCCAGAACATGTTCCTGCTACTGGGAAATTTTCAAATGTGCTGAAGTTTATTGTTAAAGAGGTTGACACATCTACAGGGGAAGTTGATGAGGATGGTGTGGAGGATGAATACCAGATCGAAGACCTGGAAATTGTTTCGGCTGATTACATGCTGAGGGTTGCAGTCTCCAACT TCAAGAATGCCTGGGAAAATATGGACCCAGAAAGTGAGCCGTGTCGATGAGTATGGACTTGGTGTTAGAGAGAGCTT GCTGAGGCTGTGAGTGCTGTCATTAGTATCCTTGGTATGCAGCCTTGTGAGGGCACTGAGGTTGTACC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CF279032             [                                                                                                                                                                                                                                                 TGTTCAAAGCCACTTAGGAGTTTGCCTTATGATTCACCTGGGCAAATTTTTGTTGCTTTTGAAAAGCCAGAACATGTTCCTGCTACTGGGAAATTTTCAAATGTGCTGAAGTTTATTGTTAAAGAGGTTGACACATCTACAGGGGAAGTTGATGAGGATGGTGTGGAGGATGAATACCAGATCGAAGACCTGGAAATTGTTTCGGCTGATTACATGCTGAGGGTTGCAGTCTCCAACT TCAGGAATGCCTGGGAAAATATGGACCCAGAAAGTGAG CGTGTCGATGAGTATGGACTTGGTGTTAGAGAGAGCTTGGCTGAGGCTGTGAGTGCTGTCATTAGTATCCTTGGTATGCAGCCTTGTGAGGGCACTGAGGTTGTACCAAAGAATGCAAGATCGCACACTTGCCTGCTGTCTGGTGTGTTCATCGGCGACGCCA AGGTTCTTGTCAGGCTATCGTTTGGACTGAGCGGGCCCA AGGAAGTGGCGATGAAGCTTGCCGTCAGGTCAGATGATCCCGAAGTCAGTGACAAGAT CCACGAGATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BE040044             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TCTCCAACTGTGAGGAATGCCTGGGAAAATATGGACCCAGAAAGTGAG CGTGTCGATGAGTATGGACTTGGTGTTAGAGAGAGCTTGGCTGAGGCTGTGAGTGCTGTCATTAGTATCCTTGGTATGCAGCCTTGTGAGGGCACTGAGGTTGTACCAAAGAATGCAAGATCGCACACTTGCCTGCTGTCTGGTGTGTTCATCGGCGACGCCA AGGTTCTTGTCAGGCTATCGTTTGGACTGAGCGGGCCCA AGGAAGTGGCGATGAAGCTTGCCGTCAGGTCAGATGATCCCGAAGTCAGTGACAAGAT CCACGAGATTGTTGCCA GCGGCTAAAGCGGGGCGCCCTGCCCCTGATATAAAATGATGTAGAGCCGGTAGATAGTCTTTTTCACCTTTCGTGATAAAATAGTTATACTACACCTATTGATGCCTCACTTTTTACAGACAACACTCCTGCCTCGTGCGTATTATTGCTCAGGTAGTGTATTAGTGTATCAGATCATGTCCCCTTGTGTAGTTGTGTTCACCGCTCGGTTTGATTTTTT GTTTCTTTTCTTTGGACAAGTTGTTTACTTAATGTGGATATAATTCATTGGTGA    A     AAAAAAAAAATAGAATAATAATTAATCAATTCTCTTGTGTTATCAATATTTTCAGGGGGGGCCGGGTCCCAATCGCCTTAATGAGTCTATTACCCCCCTAATGGCCGCTTTTAAACGTCGGACGGAAACCTGGGTTCCAAATAAAGCCTGAAAACACCTTTGCGCAACTGCGTAAAAAAGAGCCACACGACCCTTATAATATTGCAACTCTAGCAAAGGACCCCCTTTACGCACTCCGCGCGGGTGGGGATACCGACGGATATAATAAAGGCCTGACGCTAATTGAATTGCTTAATTCTGACTAAGTGAGACAGAGGCAAGAGCTCTCTCATACATTTTTCATGCATCTACAAATTT]
[+] EMBL CA767338             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AAAGTGAG CGTGTCGATGAGTATGGACTTGGTGTTAGAGAGAGCTTGGCTGAGGCTGTGAGTGCTGTCATTAGTATCCTTGGTATGCAGCCTTGTGAGGGCACTGAGGTTGTACCAAAGAATGCAAGATCGCACACTTGCCTGCTGTCTGGTGTGTTCATCGGCGACGCCA AGGTTCTTGTCAGGCTATCGTTTGGACTGAGCGGGCCCA AGGAAGTGGCGATGAAGCTTGCCGTCAGGTCAGATGATCCCGAAGTCAGTGACAAGAT CCACGAGATTGNTGNCA GCGGCTAAAGCGGGGCGCCCTGCCCCTGATNTNAAATGATGTANAGCCCGGAGATAGNCTTTTTAACCTTTCGGGATAAAANAGTTNTNCTACCCCTATTGATGCCTNACTTTTTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BQ908736             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GTATCCTTGGTAT CAGCCTTGTGAGGGCACTGAGGTTGTACCCAAGAATGCAAGATCGCACACTTGCCTGCTGTCTGGTGTGTTCATCGGCGACGCCACAGGTTCTTGTCAGGCTATCGTTTGGACTGAGCGGGCCCACAGGAAGTGGCGATGAAGCTTGCCGTCAGGTCAGATGATCCCGAAGTCAGTGACAAGAT CCACGAGATTGTTGCCACGCGGCTAAAGCGGGGCGCCCTGCCCCTGATATAAAATGATGTAGAGCCGGTAGATAGTCTTTTTCACCTTTCGTGATAAAATAGTTATACTACACCTATTGATGCCTCACTTTTTACAGATAACACTCCTGCCTCGTGCGTATTATTGCTCAGGTAGTGTATTAGTGTATCAGATCATGTCCCCTTGTGTAGTTGTGTTCACCGCTCGGTTTGATTTTTTGGTTTCTTTTCTTTGGACNGTTTGTTTACTTAATGTGGATATAATTCATTGGTGA    ACCGNGAAAAAAAAAA                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CF279033             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CCAAAGAATGCAAGATCGCACACTTGCCTGCTGTCTGGTGTGTTCATCGGCGACGCCA AGGTTCTTGTCAGGCTATCGTTTGGACTGAGCGGGCCCA AGGAAGTGGCGATGAAGCTTGCCGTCAGGTCAGATGATCCCGAAGTCAGTGACAAGAT CCACGAGATTGTTGCCA GCGGCTAAAGCGGGGCGCCCTGCCCCTGATATAAAATGATGTAGAGCCGGTAGATAATAAAAATAACCTTTCGTGATAAAATAGTAATACTACACCTATTGATAACACAATTTTTACAGACAACACTCCTGCCTCGTGCGTATTATTGCTCAGGTAGTGTATTAGTGTATCAGATCATGTCCCCTTGTGTAGTTGTGTTCACCGCTCGGTTTGATTTTTT GTTTCTTTTCTTTGGACAGTATATTTACTTAATGTGGATATAAaaa                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AU091449             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CCA AGGTTCTTGTCAGGCTATCGTTTGGACTGAGCGGNCCCA AGGAAGTGGCGATGAAGCTTGCCGTCAGGTCAGATGATCCCGAAGTCAGTGACAAGAT CCACGAGATTGTTGCCA GCGGCTAAAGCGGGGCGCCCTGCCCCTGATATAAAATGATGTAGAGCCGGTAGATAGTCTTTTTCACCTTTCGTGATAAAATAGTTATACTACACCTATTGATGCCTCACTTTTTACAGACAACACTCCTGCCTCGTGCGTATTATTGCTCAGGTAGTGTATTAGTGTATCAGATCATGTCCCCTTGTGTAGTTGTGTTCACCGCTCGGTTTGATTTTTT GTTTCTTTTCTTTGGACAGTTTGTTTACTTAATGTGGATATAATTCATTGGTGANCCGA     AAAAAAAAAAAAAAAAAAa                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AI978385             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TTCTTGTCAGGCTATCGTTTGGANNGAGCGGGCCCA ANNNAGTGGCGATGAAGCTTGCCGTCAGGTCNNNTGATCCCGAAGTCAGTGACAAGAT CCACGAGATTGTTGCCA GCGGCTAAAGCGGGGCGCCCTGCCCCTGATATAAAATGATGTAGAGCCGGTAGATAGTCTTTTTCACCTTTCGTGATAAAATAGTTATACTACACCTATTGATGCCTCACTTTTTACAGATAACACTCCTGCCTCGTGCGTATTATTGCTCAGGTAGTGTATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU101620             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GGTCAGATGATCCCGAAGTCAGTGACAAGATCCCACGAGATTGTTGCCA GCGGCTAAAGCGGGGCGCCCTGCCCCTGATATAAAATGATGTAGANCCGGTAGATAGTCTTTTTCACCTTTCGTGATAAAATAGTTATACTACACCTATTGATGCCTCACTTTTTACAGACAACACTCCTGCCTCGTGCGTATTATTGCTCAGGTAGTGTATTAGTGTATCAGATCATGTCCCCTTGTGTAGTTGTGTTCACCGCTCGGTTTGATTTTTT GTTTCTTTTCTTTGGACAGTTTGTTTACTTAATGTGGATATAATTCATTGGTGA    ACCGTGAAAAAAAAAAA                                                                                                                                                                                                                                                                                                                                                          ]




>consensus_13947#0
TGCTTATCAGAAGATTCTCTCGTCCATTCCTGAGTTCTCCGGGTTTGGAAGGCTCTTCAA
GTCCTCAGAACCTGTGGAGCTGACAGAGGCGGAGACTGAATATGCGATTAATGTGGTTAA
GCACATATACAGTAGCCATGTTGTGTTGCAGTACAACTGTACAAACACTATACCCGAACA
ACTGCTAGAAAATGTGACTGTTTATGTTGATGCCACTGATGCTGAGGAATTTTCAGAAGT
TTGTTCAAAGCCACTTAGAAGTTTGCCTTATGATTCACCTGGGCAAATTTTTGTTGCTTT
TGAAAAGCCAGAACATGTTCCTGCTACTGGGAAATTTTCAAATGTGCTGAAGTTTATTGT
TAAAGAGGTTGACACATCTACAGGGGAAGTTGATGAGGATGGTGTGGAGGATGAATACCA
GATCGAAGACCTGGAAATTGTTTCGGCTGATTACATGCTGAGGGTTGCAGTCTCCAACTT
CAGGAATGCCTGGGAAAATATGGACCCAGAAAGTGAGCGTGTCGATGAGTATGGACTTGG
TGTTAGAGAGAGCTTGGCTGAGGCTGTGAGTGCTGTCATTAGTATCCTTGGTATGCAGCC
TTGTGAGGGCACTGAGGTTGTACCAAAGAATGCAAGATCGCACACTTGCCTGCTGTCTGG
TGTGTTCATCGGCGACGCCAAGGTTCTTGTCAGGCTATCGTTTGGACTGAGCGGGCCCAA
GGAAGTGGCGATGAAGCTTGCCGTCAGGTCAGATGATCCCGAAGTCAGTGACAAGATCCA
CGAGATTGTTGCCAGCGGCTAAAGCGGGGCGCCCTGCCCCTGATATAAAATGATGTAGAG
CCGGTAGATAGTCTTTTTCACCTTTCGTGATAAAATAGTTATACTACACCTATTGATGCC
TCACTTTTTACAGACAACACTCCTGCCTCGTGCGTATTATTGCTCAGGTAGTGTATTAGT
GTATCAGATCATGTCCCCTTGTGTAGTTGTGTTCACCGCTCGGTTTGATTTTTTGTTTCT
TTTCTTTGGACAGTTTGTTTACTTAATGTGGATATAATTCATTGGTGAAAAAAAAAAAAA
AGAATAATAATTAATCAATTCTCTTGTGTTATCAATATTTTCAGGGGGGGCCGGGTCCCA
ATCGCCTTAATGAGTCTATTACCCCCCTAATGGCCGCTTTTAAACGTCGGACGGAAACCT
GGGTTCCAAATAAAGCCTGAAAACACCTTTGCGCAACTGCGTAAAAAAGAGCCACACGAC
CCTTATAATATTGCAACTCTAGCAAAGGACCCCCTTTACGCACTCCGCGCGGGTGGGGAT
ACCGACGGATATAATAAAGGCCTGACGCTAATTGAATTGCTTAATTCTGACTAAGTGAGA
CAGAGGCAAGAGCTCTCTCATACATTTTTCATGCATCTACAAATTT

consensusID : consensus_13947#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 545
fasta sequence

                              [ATACCCGAACAACTGCTAGAAAATGTGACTGTTTATGTTGATGCCACTGATGCTGAGGAATTTTCAGAAGTTTGTTCAAAGCCACTTAGAAGTTTGCCTTATGATTCACCTGGGCAAATTTTTGTTGCTTTTGAAAAGCCAGAACATGTTCCTGCTACTGGGAAATTTTCAAATGTGCTGAAGTTTATTGTTAAAGAGGTTGACACATCTACAGGGGAAGTTGATGAGGATGGTGTGGAGGATGAATACCAGATCGAAGACCTGGAAATTGTTTCGGCTGATTACATGCTGAGGGTTGCAGTCTCCAACTTCAGGAATGCCTGGGAAAATATGGACCCAGAAAGTGAGCGTGTCGATGAGTATGGACTTGGTGTTAAAGAGAGCTTGGCTGAGGCTTGTGAGTGCTGCATTAGTATCCTTGGTATGCACCTTGTGAGGGCACTGAGGTTTACCTTGCCCGACGGCCCCCTCGAAATCACTAATGAATTCCCGGCCGCCTGCAAGGTCGACATATGGGATACCTCCCAACACCTTTGAATCCATAA]

[+] EMBL BI118857             [ATACCCGAACAACTGCTAGAAAATGTGACTGTTTATGTTGATGCCACTGATGCTGAGGAATTTTCAGAAGTTTGTTCAAAGCCACTTAGAAGTTTGCCTTATGATTCACCTGGGCAAATTTTTGTTGCTTTTGAAAAGCCAGAACATGTTCCTGCTACTGGGAAATTTTCAAATGTGCTGAAGTTTATTGTTAAAGAGGTTGACACATCTACAGGGGAAGTTGATGAGGATGGTGTGGAGGATGAATACCAGATCGAAGACCTGGAAATTGTTTCGGCTGATTACATGCTGAGGGTTGCAGTCTCCAACTTCAGGAATGCCTGGGAAAATATGGACCCAGAAAGTGAGCGTGTCGATGAGTATGGACTTGGTGTTAAAGAGAGCTTGGCTGAGGCTTGTGAGTGCTGCATTAGTATCCTTGGTATGCACCTTGTGAGGGCACTGAGGTTTACCTTGCCCGACGGCCCCCTCGAAATCACTAATGAATTCCCGGCCGCCTGCAAGGTCGACATATGGGATACCTCCCAACACCTTTGAATCCATAA]
[+] EMBL OSR05491A            [                                                               TCAGAAGTTTGTTCAAAGCCACTTAGAAGTTTGCCTTATGATTCACCTGGGCAAATTTTTGTTGCTTTTGAAAAGCCAGAACATGTTCCTGCTACTGGGAAATTTTCAAATGTGCTGAAGTTTATTGTTAAAGAGGTTGACACATCTACAGGGGAAGTTGATGAGGATGGTGTGGAGGATGAATACCAGATCGAAGACCTGGAAATTGTTTCGGCTGATTACATGCTGAGGGTTGCAGTCTCCAACTTCAGGAATGCCTGGGNAAATATGGACCCA                                                                                                                                                                                                              ]




>consensus_13947#1
ATACCCGAACAACTGCTAGAAAATGTGACTGTTTATGTTGATGCCACTGATGCTGAGGAA
TTTTCAGAAGTTTGTTCAAAGCCACTTAGAAGTTTGCCTTATGATTCACCTGGGCAAATT
TTTGTTGCTTTTGAAAAGCCAGAACATGTTCCTGCTACTGGGAAATTTTCAAATGTGCTG
AAGTTTATTGTTAAAGAGGTTGACACATCTACAGGGGAAGTTGATGAGGATGGTGTGGAG
GATGAATACCAGATCGAAGACCTGGAAATTGTTTCGGCTGATTACATGCTGAGGGTTGCA
GTCTCCAACTTCAGGAATGCCTGGGAAAATATGGACCCAGAAAGTGAGCGTGTCGATGAG
TATGGACTTGGTGTTAAAGAGAGCTTGGCTGAGGCTTGTGAGTGCTGCATTAGTATCCTT
GGTATGCACCTTGTGAGGGCACTGAGGTTTACCTTGCCCGACGGCCCCCTCGAAATCACT
AATGAATTCCCGGCCGCCTGCAAGGTCGACATATGGGATACCTCCCAACACCTTTGAATC
CATAA

consensusID : consensus_13947#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 289
fasta sequence

                              [TGATAAAATTGATTTNAGAGTCCTGGTAGATGATGCTTTTTCACCTTTCGTGGATAAAATAGTTATACTACACCTGATTGGATGCCTCACTTTGTTGACAGACCCACACCTGCTCTGGCTCTGCGTGCGTGATTGATTGCTGCAGGGTGAGTGTGATTGAGTGGGATGCAGATCATGTCCCCTTGTGTAGTTGTGTTCACCAGCTCGGTTTGATTTTNTTTTCTTTTCTTTGGACAGTTTGTTTACTTAATGTGGATATAATTCATTGGTGAACCCGTGAAAAAAAAAA]

[+] EMBL BI807069             [TGATAAAATTGATTTNAGAGTCCTGGTAGATGATGCTTTTTCACCTTTCGTGGATAAAATAGTTATACTACACCTGATTGGATGCCTCACTTTGTTGACAGACCCACACCTGCTCTGGCTCTGCGTGCGTGATTGATTGCTGCAGGGTGAGTGTGATTGAGTGGGATGCAGATCATGTCCCCTTGTGTAGTTGTGTTCACCAGCTCGGTTTGATTTTNTTTTCTTTTCTTTGGACAGTTTGTTTACTTAATGTGGATATAATTCATTGGTGAACCCGTGAAAAAAAAAA]




>consensus_13947#2
TGATAAAATTGATTTNAGAGTCCTGGTAGATGATGCTTTTTCACCTTTCGTGGATAAAAT
AGTTATACTACACCTGATTGGATGCCTCACTTTGTTGACAGACCCACACCTGCTCTGGCT
CTGCGTGCGTGATTGATTGCTGCAGGGTGAGTGTGATTGAGTGGGATGCAGATCATGTCC
CCTTGTGTAGTTGTGTTCACCAGCTCGGTTTGATTTTNTTTTCTTTTCTTTGGACAGTTT
GTTTACTTAATGTGGATATAATTCATTGGTGAACCCGTGAAAAAAAAAA

consensusID : consensus_13947#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 251
fasta sequence

                              [CCCCTGCCCCTGATATAAAATGATGTAGAGCCGGTAGATATTTTTTTTCCCCTTTGGTGATAAAATAGTTATACTACCCCTATTGATGCAAAAAAATTTACAGCCAACCCTCCTGCTTGGTGGGTATTATTGCTAAAAAAAAGAATTAGTGTATCAGATCATGTCCCCTTGTGTAGTTGTGTTCCCGTATCGGTTAGATTTTTTGTTTTTTTTCTTTGGCCAGTTTGTTTACTTAATGTGGATATAATTCA]

[-] EMBL CF280572             [CCCCTGCCCCTGATATAAAATGATGTAGAGCCGGTAGATATTTTTTTTCCCCTTTGGTGATAAAATAGTTATACTACCCCTATTGATGCAAAAAAATTTACAGCCAACCCTCCTGCTTGGTGGGTATTATTGCTAAAAAAAAGAATTAGTGTATCAGATCATGTCCCCTTGTGTAGTTGTGTTCCCGTATCGGTTAGATTTTTTGTTTTTTTTCTTTGGCCAGTTTGTTTACTTAATGTGGATATAATTCA]




>consensus_13947#3
CCCCTGCCCCTGATATAAAATGATGTAGAGCCGGTAGATATTTTTTTTCCCCTTTGGTGA
TAAAATAGTTATACTACCCCTATTGATGCAAAAAAATTTACAGCCAACCCTCCTGCTTGG
TGGGTATTATTGCTAAAAAAAAGAATTAGTGTATCAGATCATGTCCCCTTGTGTAGTTGT
GTTCCCGTATCGGTTAGATTTTTTGTTTTTTTTCTTTGGCCAGTTTGTTTACTTAATGTG
GATATAATTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13947#2      ------------------------------------------------------------
consensus_13947#3      ------------------------------------------------------------
consensus_13947#0      TGCTTATCAGAAGATTCTCTCGTCCATTCCTGAGTTCTCCGGGTTTGGAAGGCTCTTCAA 60
consensus_13947#1      ------------------------------------------------------------
                                                                                   

consensus_13947#2      ------------------------------------------------------------
consensus_13947#3      ------------------------------------------------------------
consensus_13947#0      GTCCTCAGAACCTGTGGAGCTGACAGAGGCGGAGACTGAATATGCGATTAATGTGGTTAA 120
consensus_13947#1      ------------------------------------------------------------
                                                                                   

consensus_13947#2      ------------------------------------------------------------
consensus_13947#3      ------------------------------------------------------------
consensus_13947#0      GCACATATACAGTAGCCATGTTGTGTTGCAGTACAACTGTACAAACACTATACCCGAACA 180
consensus_13947#1      ------------------------------------------------------------
                                                                                   

consensus_13947#2      ------------------------------------------------------------
consensus_13947#3      ------------------------------------------------------------
consensus_13947#0      ACTGCTAGAAAATGTGACTGTTTATGTTGATGCCACTGATGCTGAGGAATTTTCAGAAGT 240
consensus_13947#1      ------------------------------------------------------------
                                                                                   

consensus_13947#2      ------------------------------------------------------------
consensus_13947#3      ------------------------------------------------------------
consensus_13947#0      TTGTTCAAAGCCACTTAGAAGTTTGCCTTATGATTCACCTGGGCAAATTTTTGTTGCTTT 300
consensus_13947#1      ------------------------------------------------------------
                                                                                   

consensus_13947#2      ------------------------------------------------------------
consensus_13947#3      ------------------------------------------------------------
consensus_13947#0      TGAAAAGCCAGAACATGTTCCTGCTACTGGGAAATTTTCAAATGTGCTGAAGTTTATTGT 360
consensus_13947#1      ------------------------------------------------------------
                                                                                   

consensus_13947#2      ------------------------------------------------------------
consensus_13947#3      ------------------------------------------------------------
consensus_13947#0      TAAAGAGGTTGACACATCTACAGGGGAAGTTGATGAGGATGGTGTGGAGGATGAATACCA 420
consensus_13947#1      ------------------------------------------------------------
                                                                                   

consensus_13947#2      ------------------------------------------------------------
consensus_13947#3      ------------------------------------------------------------
consensus_13947#0      GATCGAAGACCTGGAAATTGTTTCGGCTGATTACATGCTGAGGGTTGCAGTCTCCAACTT 480
consensus_13947#1      ------------------------------------------------------------
                                                                                   

consensus_13947#2      ------------------------------------------------------------
consensus_13947#3      ------------------------------------------------------------
consensus_13947#0      CAGGAATGCCTGGGAAAATATGGACCCAGAAAGTGAGCGTGTCGATGAGTATGGACTTGG 540
consensus_13947#1      ------------------------------------------------------------
                                                                                   

consensus_13947#2      ------------------------------------------------------------
consensus_13947#3      ------------------------------------------------------------
consensus_13947#0      TGTTAGAGAGAGCTTGGCTGAGGCTGTGAGTGCTGTCATTAGTATCCTTGGTATGCAGCC 600
consensus_13947#1      ------------------------------------------------------------
                                                                                   

consensus_13947#2      ------------------------------------------------------------
consensus_13947#3      ------------------------------------------------------------
consensus_13947#0      TTGTGAGGGCACTGAGGTTGTACCAAAGAATGCAAGATCGCACACTTGCCTGCTGTCTGG 660
consensus_13947#1      ------------------------------------------------------------
                                                                                   

consensus_13947#2      ------------------------------------------------------------
consensus_13947#3      ------------------------------------------------------------
consensus_13947#0      TGTGTTCATCGGCGACGCCAAGGTTCTTGTCAGGCTATCGTTTGGACTGAGCGGGCCCAA 720
consensus_13947#1      ------------------------------------------------------------
                                                                                   

consensus_13947#2      ------------------------------------------------------------
consensus_13947#3      ------------------------------------------------------------
consensus_13947#0      GGAAGTGGCGATGAAGCTTGCCGTCAGGTCAGATGATCCCGAAGTCAGTGACAAGATCCA 780
consensus_13947#1      ---------------ATACCCGAACAACTGCTAGAAAATGTGACTGTTTATGTTGATGCC 45
                                                                                   

consensus_13947#2      ----------------------------------------TGATAAAATTGATTTNAGAG 20
consensus_13947#3      ------------------------------CCCCTGCCCCTGATATAAAATGATGTAGAG 30
consensus_13947#0      CGAGATTGTTGCCAGCGGCTAAAGCGGGGCGCCCTGCCCCTGATATAAAATGATGTAGAG 840
consensus_13947#1      ACTGATGCTGAGGAATTTTCAGAAGTTTGTTCAAAGCCACTTA-GAAGTTTGCCTTATGA 104
                                                               * *   *         *   

consensus_13947#2      TCCTGGTAGATGATGCTTTTTCACCTTTCGTGGATAAAATAGTTATACTACACCTGATTG 80
consensus_13947#3      CC--GGTAGAT-ATTTTTTTTCCCCTTTGGTG-ATAAAATAGTTATACTACCCCT-ATTG 85
consensus_13947#0      CC--GGTAGAT-AGTCTTTTTCACCTTTCGTG-ATAAAATAGTTATACTACACCT-ATTG 895
consensus_13947#1      TTCACCTGGGCAAATTTTTGTTGCTTTTGAAAAGCCAGAACATGTTCCTGCTACTGGGAA 164
                             * *   *   *** *  * ***        * *   *  * ** *  **     

consensus_13947#2      GATGCCTCACTTTGTTGACAGACCCACACCTGCTCTGGCTC-TGCGTGCGTGATTGATTG 139
consensus_13947#3      A-----------TGCAAAAAAATTTACAGCCAACCC--TCC-TGCTTG-GTGGGT-ATTA 129
consensus_13947#0      A-----------TGCCTCACTTTTTACAGACAACAC--TCC-TGCCTC-GTGCGT-ATTA 939
consensus_13947#1      ATTTTCAAA---TGTGCTGAAGTTTATTGTTAAAGAGGTTGACACATCTACAGGGGAAGT 221
                                   **           *                  * *         *   

consensus_13947#2      CTGCAGGGTGAGTGTGATTGAGTGGGATGCAGATCATGTCCCCTTGTGTAGTTGTGTTCA 199
consensus_13947#3      TTGCTAAAAAAAAGAATTAGTGTAT----CAGATCATGTCCCCTTGTGTAGTTGTGTTC- 184
consensus_13947#0      TTGCTCAGGTAGTGTATTAGTGTAT----CAGATCATGTCCCCTTGTGTAGTTGTGTTCA 995
consensus_13947#1      TGATGAGGATGGTGTGG-AGGATGAATACCAGATCGAAGACCTGGAAATTGTTTCGGCTG 280
                                    *     *  *      ******     **      * ***  *    

consensus_13947#2      CCAGCTCGGTTTGATTTTNT-TTTCTTTTCTTTGGACAGTTTGTTTACTTAATGTGGATA 258
consensus_13947#3      CCGTATCGGTTAGATTTTTTGTTTTTTTTCTTTGGCCAGTTTGTTTACTTAATGTGGATA 244
consensus_13947#0      CCG-CTCGGTTTGATTTTTTGTTTCTTTTCTTTGGACAGTTTGTTTACTTAATGTGGATA 1054
consensus_13947#1      ATTACATGCTGAGGGTTGCAGTCTCCAACTTCAGGAATGCCTGGGAA---AATATGGACC 337
                              * *  *  **    * *      *  **   *  **   *   *** ****  

consensus_13947#2      TAATTCATTGGTGAACCCGTGAAAAAAAAAA----------------------------- 289
consensus_13947#3      TAATTCA----------------------------------------------------- 251
consensus_13947#0      TAATTCATTGGTGAAAAAAAAAAAAAAGAATAATAATTAATCAATTCTCTTGTGTTATCA 1114
consensus_13947#1      CAGAAAGTGAGCGTGTCGATGAGTATGGACTTGGTGTTAAAGAGAGCTTGGCTGAGGCTT 397
                        *                                                          

consensus_13947#2      ------------------------------------------------------------
consensus_13947#3      ------------------------------------------------------------
consensus_13947#0      ATATTTTCAGGGGGGGCCGGGTCCCAATCGCCTTAATGAGTCTATTACCCCCCTAATGGC 1174
consensus_13947#1      GTGAGTGCTGCATTAGTATCCTTGGTATGCACCTTGTGAGGGCACTGAGGTTTACCTTGC 457
                                                                                   

consensus_13947#2      ------------------------------------------------------------
consensus_13947#3      ------------------------------------------------------------
consensus_13947#0      CGCTTTTAAACGTCGGACGGAAACCTGGGTTCCAAATAAAGCCTGAAAACACCTTTGCGC 1234
consensus_13947#1      CCGACGGCCCCCTCGAAATCACTAATGAATTCCCGGCCGCCTGCAAGGTCGACATATGGG 517
                                                                                   

consensus_13947#2      ------------------------------------------------------------
consensus_13947#3      ------------------------------------------------------------
consensus_13947#0      AACTGCGTAAAAAAGAGCCACACGACCCTTATAATATTGCAACTCTAGCAAAGGACCCCC 1294
consensus_13947#1      ATACCTCCCAACACCTTTGAATCCATAA-------------------------------- 545
                                                                                   

consensus_13947#2      ------------------------------------------------------------
consensus_13947#3      ------------------------------------------------------------
consensus_13947#0      TTTACGCACTCCGCGCGGGTGGGGATACCGACGGATATAATAAAGGCCTGACGCTAATTG 1354
consensus_13947#1      ------------------------------------------------------------
                                                                                   

consensus_13947#2      ------------------------------------------------------------
consensus_13947#3      ------------------------------------------------------------
consensus_13947#0      AATTGCTTAATTCTGACTAAGTGAGACAGAGGCAAGAGCTCTCTCATACATTTTTCATGC 1414
consensus_13947#1      ------------------------------------------------------------
                                                                                   

consensus_13947#2      ------------
consensus_13947#3      ------------
consensus_13947#0      ATCTACAAATTT 1426
consensus_13947#1      ------------