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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13948#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1775 fasta sequence
[GGACGGGAGGCTTCCTCCTCCTCCTCCTACTCGAGACTCGACGCCGCCACCTCCACCTCCCGTCTCGTCTCCAGAAGCTTCTGGAACACCCTTCCGGCTTCAATTCCCCCCTGCTCGGGTCGGGTAGCTCCCTTCCATCATCCATGGCCGACGCCACCGCCGCCCTCTCAGCTCGGAGCAAGGTGCAAGCTTTCCTCGAAGCGGCTCGTGCCGGTGATCTCGACTCCCTCAAGAAGCTCGCTGCGGCGCTCGACGAGGAGGGCAAGGGCGTCGCCGCCGTCGCTGCTGCCGTCAAGGACGCCAACAAGCGCACCGCCCTGCACTTCGCCGCCCGCGAGGGCCGCACCCACGTCTGTCACTTCCTCATCTCCGACCTCGCCCTCCCCGTCGACCCCAAGGACGACGATGGTGAAACTCCACTCATCCATGCTACGCGCCAAGCCCATCTCCAAACTGTAACCTATCTGCTTCACCATGGAGCAGATCCTTCCGTTGCTTCTTCCCTCGGA-GCCACGCCATTGCACCATGCTGCCGGCATAGGGAACCT-GGACCTTATGAAACTATTTCTCTCCAAGGGGGTTGATGTTGAATCAGAAAGCGATGCCGGCACACCCCTCATATGGGCTGCTGGTCATGGACAGCAAGAGGCAGTCAAACTTTTGCTTCAACACGATGCTAAGCCAAATACTGAAAACGATGATGGTATTACGCCTTTGTTGTCTGCTGTTGCAGCGGGTTCCCTCCCATGCTTGGATATTCTAATTCAGGCAGGTGCACATCCGAATATCAGAGCTGGTGGAGCAACCCCATTACATATTGCTGCAGATGGTGGAAACATGGAAATAATAAATTGTTTACTTAAAGCTGGAAGTGACCCCAATGCATGTGATGATGATGGACTAAAGCCAATACAGGTTGCTGCTTTGAGGAATAACCGTGAAGTTGTGGAACTTCTTTTACCTTTGACATCACCAATTCCAGGTGTTTCGAGTTGGAGTATTGATGGAATTATAGAATACACTAAATCAGTCGAGGAAAAGGCACAGGTAAAGGAAGCTACAACTCAGAAAGCAGACAGATTACAAGTACCACAACTTGTTGAGGTGTCATCTGAGGCAAAAGAGAGATCATTGGAGGCAAAATCGAGAGGTGATGATGCCTTCAGAAATAAAGACTACCTAGTAGCAGTAGATGCCTACACACAGGCTATTGAGTTAAATCCAAACG-ACGCCACGTTGCATTCAAACAGAAGCCTTTGCTGGCTACGGGCAGGGCAAGCTGAACGTGCTCTGGAGGATGCAAGAGCATGTCGAGCGCTGAGGCCAGACTGGGCGAAAGCTTGCTACAGGGAAGGCGCGGCACTGCGCCTGCTGCAGAGGTTCGAAGAAGCCGCGAATGCCTTCTATGAGGGGGTGCAGCTTGAGCCAGAGAACGGCGAGCTTGTGAGCGCGTTCAGGGAGGCGGTTGAAGCCGGGAGGAAATTCCATGGGACGGACAAGAAGCAAAAGGCAGATGCATCAACGTGATGTGTTTTTGGAATGGCTTAGACCTATACAAGGAGGAATCACTGAATCTGTACCACTAGATTAGTATTAGTTTGGCTTGGCCAAGAAACGGAGCAGCTGAAATCTGAACACCTCTTTTGATGTTGCTACAAATTTATTATATTAGTATCAATTACTATCAGATTGAATTCTGTTTGTGTCGTGGCTGGTTCTAGATTCGAGTGGCTAAACTGTACCCATGTTCTTCAGCATTTCTTTAATCTACGGTAT]
[+] EMBL AK102584 [GGACGGGAGGCTTCCTCCTCCTCCTCCTACTCGAGACTCGACGCCGCCACCTCCACCTCCCGTCTCGTCTCCAGAAGCTTCTGGAACACCCTTCCGGCTTCAATTCCCCCCTGCTCGGGTCGGGTAGCTCCCTTCCATCATCCATGGCCGACGCCACCGCCGCCCTCTCAGCTCGGAGCAAGGTGCAAGCTTTCCTCGAAGCGGCTCGTGCCGGTGATCTCGACTCCCTCAAGAAGCTCGCTGCGGCGCTCGACGAGGAGGGCAAGGGCGTCGCCGCCGTCGCTGCTGCCGTCAAGGACGCCAACAAGCGCACCGCCCTGCACTTCGCCGCCCGCGAGGGCCGCACCCACGTCTGTCACTTCCTCATCTCCGACCTCGCCCTCCCCGTCGACCCCAAGGACGACGATGGTGAAACTCCACTCATCCATGCTACGCGCCAAGCCCATCTCCAAACTGTAACCTATCTGCTTCACCATGGAGCAGATCCTTCCGTTGCTTCTTCCCTCGGA GCCACGCCATTGCACCATGCTGCCGGCATAGGGAACCT GGACCTTATGAAACTATTTCTCTCCAAGGGGGTTGATGTTGAATCAGAAAGCGATGCCGGCACACCCCTCATATGGGCTGCTGGTCATGGACAGCAAGAGGCAGTCAAACTTTTGCTTCAACACGATGCTAAGCCAAATACTGAAAACGATGATGGTATTACGCCTTTGTTGTCTGCTGTTGCAGCGGGTTCCCTCCCATGCTTGGATATTCTAATTCAGGCAGGTGCACATCCGAATATCAGAGCTGGTGGAGCAACCCCATTACATATTGCTGCAGATGGTGGAAACATGGAAATAATAAATTGTTTACTTAAAGCTGGAAGTGACCCCAATGCATGTGATGATGATGGACTAAAGCCAATACAGGTTGCTGCTTTGAGGAATAACCGTGAAGTTGTGGAACTTCTTTTACCTTTGACATCACCAATTCCAGGTGTTTCGAGTTGGAGTATTGATGGAATTATAGAATACACTAAATCAGTCGAGGAAAAGGCACAGGTAAAGGAAGCTACAACTCAGAAAGCAGACAGATTACAAGTACCACAACTTGTTGAGGTGTCATCTGAGGCAAAAGAGAGATCATTGGAGGCAAAATCGAGAGGTGATGATGCCTTCAGAAATAAAGACTACCTAGTAGCAGTAGATGCCTACACACAGGCTATTGAGTTAAATCCAAACG ACGCCACGTTGCATTCAAACAGAAGCCTTTGCTGGCTACGGGCAGGGCAAGCTGAACGTGCTCTGGAGGATGCAAGAGCATGTCGAGCGCTGAGGCCAGACTGGGCGAAAGCTTGCTACAGGGAAGGCGCGGCACTGCGCCTGCTGCAGAGGTTCGAAGAAGCCGCGAATGCCTTCTATGAGGGGGTGCAGCTTGAGCCAGAGAACGGCGAGCTTGTGAGCGCGTTCAGGGAGGCGGTTGAAGCCGGGAGGAAATTCCATGGGACGGACAAGAAGCAAAAGGCAGATGCATCAACGTGATGTGTTTTTGGAATGGCTTAGACCTATACAAGGAGGAATCACTGAATCTGTACCACTAGATTAGTATTAGTTTGGCTTGGCCAAGAAACGGAGCAGCTGAAATCTGAACACCTCTTTTGATGTTGCTACAAATTTATTATATTAGTATCAATTACTATCAGATTGAATTCTGTTTGTGTCGTGGCTGGTTCTAGATTCGAGTGGCTAAACTGTACCCATGTTCTTCAGCATTTCTTTAATCTACGGTAT]
[+] EMBL OSS1615A [ CGACGCCGCCACCTCCACCTCCCGTCTCGTCTCCAGAAGCTTCTGGAACACCCTTCCGGCTTCAATTCCCCCCTGCTCGGGTCGGGTAGCTCCCTTCCATCATCCATGGCCGACGCCACCGCCGCCCTCTCAGCTCGGAGCAAGGTNCAAGCTTTCCTCGAAGCGGCTCGTGCCGGTGATCTCGACTCCCTCAAGAAGCTCGCTGCGGCGCTCGACGAGGAGGGCAAGGGCGTCGNCGCCGTCGCTGCTGCCGTCAAGGACGCCAACAAGCGCACCGCCCTGCACTTCGNCGNCCGCGAGGGCCGCACCCACGTCTGTCACTTCCTCATCTCCGACCTCGCCCTCCCCGTCGACCCCAAGGACGACGATGGTGAAANTCCACTCATCCATGCTACGGGGCAAGCCCATNTCCAAACTGTAACCTATCTGNTTCANCATGGAGAAGATC ]
[+] EMBL C28729 [ GCCACCGNCGCCCTCTCAGCTCGGAGCAAGGTGCAAGCTTTCCTCGAAGCGGCTCGTGCCGGTGATCTCGACTCCCTCAAGAAGCTCGCTGCGGCGCTCGACGAGGAGGGCAAGGGCGTNG CGCCGTCGCTGCTGCCGTCAAGGACGCCAACAAGCGCACCGCCCTGCACTTCGCCGCCCGCNA GGCCGCACCCACGTNTGTNACTTCCTCATCTCCGACCTCGACCTCCCCGTCGACCCCAAGGACGACGATGGTGAAACTCCACTCATCCATGCTACGNGNCAAGCCCATCTTCAAACTGTAACCTATCTGCTTCANCATGGAGCAGATCCTTNCGTTGTTTCTTCCCTNGGAGGCCACGGCATTGAACCATGNTGCCGG ATAGGGAACCTGGGACCTTATGAAACTATTTTTTTCAAAGGGGGTTNATGTTGAATAAGAA ]
[+] EMBL CB625677 [ ACTCCCTCTTTAAGCTCGCTGCGGCTCTCGACGAGGAGGGCAAGGGCGTCGCCGCCGTCGCTGCTGCCGTCAAGGACGCCAACAAGCGCACCGCCCTGCACTTCGCCGCCCGCGAGGGCCGCACCCACGTCTGTCACTTCCTCATCTCCGACCTCGCCCTCCCCGTCGACCCCAAGGACGACGATGGTGAAACTCCACTCATCCATGCTACGCGCCAAGCCCATCTCCAAACTGTAACCTATCTGCTTCACCATGGAGCAGATCCTTCCGTTGCTTCTTCCCTCGGA GCCACGCCATTGCACCATGCTGCCGGCATAGGGAACCT GGACCTTATGAAACTATTTCTCTCCAAGGGGGTTGATGTTGAATCAGAAAGCGATGCCGGCACACCCCTCATATGGGCTGCTGGTCATGGACAGCAAGAGGCAGTCAAACTTTTGCTTCAACACGATGCTAAGCCAAATACTGAAAACGATGATGGTATTACGCCTTTGTTGTCTGCTGTTGCAGCGGGTTCCCTCCCATGCTTGGATATTCTAATTCAGGCAGGTGCACATCCGAATATCAGAGCTGGTGGAGCAACCCCATTACATATTGCTGCAGATGGTGGAAACATGGAAATAATAAATTGTTTACTTAAAGCTGGAAGTGACCCCAATGCATGTGATGATGATGGACTAAAGCCAATACAGGTTGCTGCTTTGAGGAATAACCGTGAAGTTGTGGAACTTCTTTTACCTTTGACATCACCAATTCCAGGTGTTTCGAGTTGGAGTATTGATGGAATTAT ]
[+] EMBL CB643079 [ TCATCTCCGACCTCGCCCTCCCCGTCGACCCCAAGGACGACGATGGTGAAACTCCACTCATCCATGCTACGCGCCAAGCCCATCTCCAAACTGTAACCTATCTGCTTCACCATGGAGCAGATCCTTCCGTTGCTTCTTCCCTCGGA GCCACGCCATTGCACCATGCTGCCGGCATAGGGAACCT GGACCTTATGAAACTATTTCTCTCCAAGGGGGTTGATGTTGAATCAGAAAGCGATGCCGGCACACCCCTCATATGGGCTGCTGGTCATGGACAGCAAGAGGCAGTCAAACTTTTGCTTCAACACGATGCTAAGCCAAATACTGAAAACGATGATGGTATTACGCCTTTGTTGTCTGCTGTTGCAGCGGGTTCCCTCCCATGCTTGGATATTCTAATTCAGGCAGGTGCACATCCGAATATCAGAGCTGGTGGAGCAACCCCATTACATATTGCTGCAGATGGTGGAAACATGGAAATAATAAATTGTTTACTTAAAGCTGGAAGTGACCCCAATGCATGTGATGATGATGGACTAAAGCCAATACAGGTTGCTGCTTTGAGGAATAACCGTGAAGTTGTGGAACTTCTTTTACCTTTGACATCACCAATTCCAGGTGTTTCGAGTTGGAGTATTGATGGAATTATAGAATACACTAAATCAGTCGAGGAAAAGGCACAGGTAAAGGAAGCTACAACTCAGAAAGCAGACAGATTACAAGTACCACAACTTGTTGAGGTGTCATCTGAGGCAAAAGAGAGATCATTGGAGGCAAAATCGAGAGGTGATGATGCCTTCAGAAATAAAGACTA ]
[-] EMBL CB652581 [ GATGATGGACTAAAGCCAATACAGGTTGCTGCTTTGAGGAATAACCGTGAAGTTGTGGAACTTCTTTTACCTTTGACATCACCAATTCCAGGTGTTTCGAGTTGGAGTATTGATGGAATTATAGAATACACTAAATCAGTCGAGGAAAAGGCACAGGTAAAGGAAGCTACAACTCAGAAAGCAGACAGATTACAAGTACCACAACTTGTTGAGGTGTCATCTGAGGCAAAAGAGAGATCATTGGAGGCAAAATCGAGAGGTGATGATGCCTTCAGAAATAAAGACTACCTAGTAGCAGTAGATGCCTACACACAGGCTATTGAGTTAAATCCAAACG ACGCCACGTTGCATTCAAACAGAAGCCTTTGCTGGCTACGGGCAGGGCAAGCTGAACGTGCTCTGGAGGATGCAAGAGCATGTCGAGCGCTGAGGCCAGACTGGGCGAAAGCTTGCTACAGGGAAGGCGCGGCACTGCGCCTGCTGCAGAGGTTCGAAGAAGCCGCGAATGCCTTCTATGAGGGGGTGCAGCTTGAGCCAGAGAACGGCGAGCTTGTGAGCGCGTTCAGGGAGGCGGTTGAAGCCGGGAGGAAATTCCATGGGACGGACAAGAAGCAAAAGGCAGATGCATCAACGTGATGTGTTTTTGGAATGGCTTAGACCTATACAAGGAGGAATCACTGAATCTGTACCACTAGATTAGTATTAGTTTGGCTTGGCCAAGAAACGGAGCAGCTGAAATCTGAACACCTCTTTTGATGTTGGTACAAATTTATTATATTAGTATCAATTACTAT ]
[-] EMBL CB678408 [ GATGATGGACTAAAGCCAATACAGGTTGCTGCTTTGAGGAATAACCGTGAAGTTGTGGAACTTCTTTTACCTTTGACATCACCAATTCCAGGTGTTTCGAGTTGGAGTATTGATGGAATTATAGAATACACTAAATCAGTCGAGGAAAAGGCACAGGTAAAGGAAGCTACAACTCAGAAAGCAGACAGATTACAAGTACCACAACTTGTTGAGGTGTCATCTGAGGCAAAAGAGAGATCATTGGAGGCAAAATCGAGAGGTGATGATGCCTTCAGAAATAAAGACTACCTAGTAGCAGTAGATGCCTACACACAGGCTATTGAGTTAAATCCAAACG ACGCCACGTTGCATTCAAACAGAAGCCTTTGCTGGCTACGGGCAGGGCAAGCTGAACGTGCTCTGGAGGATGCAAGAGCATGTCGAGCGCTGAGGCCAGACTGGGCGAAAGCTTGCTACAGGGAAGGCGCGGCACTGCGCCTGCTGCAGAGGTTCGAAGAAGCCGCGAATGCCTTCTATGAGGGGGTGCAGCTTGAGCCAGAGACCGGCGAGCTTGTGAGCGCGTTCAGGGAGGCGGTTGAAGCCGGGAGGAAATTCCATGGGACGGTCAAGAAGCAAAAGGCAGATGCATCAACGTGATGTGTTTTTGGAATGGCTTAGACCTATACAAGGAGGAATCACTGAATCTGTACCACTAGATTAGTATTAGTTTGGCTTGGCCAAGAAACGGAGCAGCTGAAATCTGAACACCTCTTTTGATGTTGCTACAAATTTATTATATTAGTATCAATTACTATCAGATTGAATT ]
[-] EMBL CB628438 [ GATGATGGACTAAAGCCAATACAGGTTGCTGCTTTGAGGAATAACCGTGAAGTTGTGGAACTTCTTTTACCTTTGACATCACCAATTCCAGGTGTTTCGAGTTGGAGTATTGATGGAATTATAGAATACACTAAATCAGTCGAGGAAAAGGCACAGGTAAAGGAAGCTACAACTCAGAAAGCAGACAGATTACAAATACCACAACTTGTTGAGGTGTCATCTGAGGCAAAAGAGAGATCATTGGAGGCAAAATCGAGAGGTGATGATGCCTTCAGAAATAAAGACTACCTAGTAGCAGTAGATGCCTACACACAGGCTATTGAGTTGAATCCAAACG ACGCCACGTTGCATTCAAACAGAAGCCTTTGCTGGCTACGGGCAGGGCAAGCTGAACGTGCTCTGGAGGATGCAAGAGCATGTCGAGCGCTGAGGCCAGACTGGGCGAAAGCTTGCTACAGGGAAGGCGCGGCACTGCGCCTGCTGCAGAGGTTCGAAGAAGCCGCGAATGCCTTCTATGAGGGGGTGCAGCTTGAGCCAGAGAACGGCGAGCTTGTGAGCGCGTTCAGGGAGGCGGTTGAAGCCGGGAGGAAATTCCATGGGACGGACAAGAAGCAAAAGGCAGATGCATCAACGTGATGTGTTTTTGGAATGGCTTAGACCTATACAAGGAGGAATCACTGAATCTGTACCACTAGATTAGTATTAGTTTGGCTTGGCCAAGAAACGGAGCAGCTGAAATCTGAACACCTCTTTTGATGTTGCTACAAATTTATTATATTAGTATCAATTACTATCAGATT ]
[-] EMBL CB643080 [ TGATGGACTAAAGCCAATACAGGTTGCTGCTTTGAGGAATAACCGTGAAGTTGTGGAACTTCTTTTACCTTTGACATCACCAATTCCAGGTGTTTCGAGTTGGAGTATTGATGGAATTATAGAATACACTAAATCAGTCGAGGAAAAGGCACAGGTAAAGGAAGCTACAACTCAGAAAGCAGACAGATTACAAGTACCACAACTTGTTGAGGTGTCATCTGAGGCAAAAGAGAGATCATTGGAGGCAAAATCGAGAGGTGATGATGCCTTCAGAAATAAAGACTACCTAGTAGCAGTAGATGCCTACACACAGGCTATTGAGTTAAATCCAAACG ACGCCACGTTGCATTCAAACAGAAGCCTTTGCTGGCTACGGGCAGGGCAAGCTGAACGTGCTCTGGAGGATGCAAGAGCATGTCGAGCGCTGAGGCCAGACTGGGCGAAAGCTTGCTACAGGGAAGGCGCGGCACTGCGCCTGCTGCAGAGGTTCGAAGAAGCCGCGAATGCCTTCTATGAGGGGGTGCAGCTTGAGCCAGAGAACGGCGAGCTTGTGAGCGCGTTCAGGGAGGCGGTTGAAGCCGGGAGGAAATTCCATGGGACGGACAAGAAGCAAAAGGCAGATGCATCAACGTGATGTGTTTTTGGAATGGCTTAGACCTATACAAGGAGGAATCACTGAATCTGTACCACTAGATTAGTATTAGTTTGGCTTGGCCAAGAAACGGAGCAGCTGAAATCTGAACACCTCTTTTGATGTTGCTACAAATTTA AAGATTAGTATCAATTACTATCA ]
[+] EMBL AA750239 [ AGTCGAGGAAA AGGTAAAGGAAGCTACAACTCAGAAAGCAGACAGATTACAAGTACCACAACTTGTTGAGGTGTCATCTGAGGCAAAAGAGAGATCATTGGAGGCAAAATCGAGAGGTGATGATGCCTTCAGAAATAAAGACTACCTAGTAGCAGTAGATGCCTACACACAGGCTA ]
[+] EMBL AA750246 [ CAACTTGTTGAGGTGTCATCTGAGGCAAAAGAGAGATCATTGGAGGCAAAATCGAGAGGTGATGATGCCTTCAGAAATAAAGACTACCTAGTAGCAGTAGATGCCTACACACAGGCTATTGAGTTAAATCCAAACGNSCGCCACGTTGCATTCAAAC ]
consensusID : consensus_13948#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 793 fasta sequence
[CAGATTACAAATACCACAACTTGTTGAGGTGTCATCTGAGGCAAAAGAGAGATCATTGGAGGCAAAATCGAGAGGTGATGATGCCTTCAGAAATAAAGACTACCTAGTAGCAGTAGATGCCTACACACAGGCTATTGAGTTGAATCCAAACGACGCCACGTTGCATTCAAACAGAAGCCTTTGCTGGCTACGGGCAGGGCAAGCTGAACGTGCTCTGGAGGATGCAAGAGCATGTCGAGCGCTGAGGCCAGACTGGGCGAAAGCTTGCTACAGGGAAGGCGCGGCACTGCGCCTGCTGCAGAGGTTCGAAGAAGCCGCGAATGCCTTCTATGAGGGGGTGCAGCTTGAGCCAGAGAACGGCGAGCTTGTGAGCGCGTTCAGGTAGTAAAGCCTTCCTCTGTGAGCAAAGAAAAGCAATGAATTCCTCCGTTGTTTAGCAATTAACATAGACATATATAGGGTGTCGTTATGATTGGTTTGGAACTCATGTGTGTATGTGTTTGTTATTCCATGCGACAAGTGAAGTTGATTACTTAAACTGATTGACAGGGAGGCGGTTGAAGCCGGGAGGAAATTCCATGGGACGGACAAGAAGCAAAAGGCAGATGCATCAACGTGATGTGTTTTTGGAATGGCTTAGACCTATACAAGGAGGAATCACTGAATCTGTACCACTAGATTAGTATTAGTTTGGCTTGGCCAAGAAACGGAGCAGCTGAAATCTGAACACCTCTTTTGATGTTGCTACAAGTTTATTATATTAGTATCAATTACTATCAGATGAAAAAAAAGA]
[-] EMBL CB625678 [CAGATTACAAATACCACAACTTGTTGAGGTGTCATCTGAGGCAAAAGAGAGATCATTGGAGGCAAAATCGAGAGGTGATGATGCCTTCAGAAATAAAGACTACCTAGTAGCAGTAGATGCCTACACACAGGCTATTGAGTTGAATCCAAACGACGCCACGTTGCATTCAAACAGAAGCCTTTGCTGGCTACGGGCAGGGCAAGCTGAACGTGCTCTGGAGGATGCAAGAGCATGTCGAGCGCTGAGGCCAGACTGGGCGAAAGCTTGCTACAGGGAAGGCGCGGCACTGCGCCTGCTGCAGAGGTTCGAAGAAGCCGCGAATGCCTTCTATGAGGGGGTGCAGCTTGAGCCAGAGAACGGCGAGCTTGTGAGCGCGTTCAGGTAGTAAAGCCTTCCTCTGTGAGCAAAGAAAAGCAATGAATTCCTCCGTTGTTTAGCAATTAACATAGACATATATAGGGTGTCGTTATGATTGGTTTGGAACTCATGTGTGTATGTGTTTGTTATTCCATGCGACAAGTGAAGTTGATTACTTAAACTGATTGACAGGGAGGCGGTTGAAGCCGGGAGGAAATTCCATGGGACGGACAAGAAGCAAAAGGCAGATGCATCAACGTGATGTGTTTTTGGAATGGCTTAGACCTATACAAGGAGGAATCACTGAATCTGTACCACTAGATTAGTATTAGTTTGGCTTGGCCAAGAAACGGAGCAGCTGAAATCTGAACACCTCTTTTGATGTTGCTACAAGTTTATTATATTAGTATCAATTACTATCAGATGAAAAAAAAGA]
[+] EMBL BI795916 [ GGAGGCGGTTGAA CCGGGAGGAAATTCCATGGGACGGACAAGAAGCAAAAGGCAGATGCATCAACGTGATGTGTTTTTGGAATGGCTTAGACCTATACAAGGAGGAATCACTGAATCTGTACCACTAGATTAGTATTAGTTTGGCTTGGCCAAGAAACGGAGCAGCTGAAATCTGAACACCTCTTTTGATGTTGCTACAAATTTATTATATTAGTATCAATTACTATCAAA AAAAAAA ]
consensusID : consensus_13948#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 232 fasta sequence
[CCGACGCACCGCCGCCTCTCAGCTCGGAGCAAAAGGCAGATGCATCAACGTGATGTGTTTTTGGAATGGCTTAGACCTATACAAGAGGAATCACTGANATCTGTACCACTAGATTAGTATTAGTTTGGCTTGGNCAAGAAACGGAGCAGCTGAAATCTGAACACCTCTTTTGATGTTGCTACAAATTTATTATATTAGTATCAATTACTATCANNAAAAANAAAAAANAANN]
[+] EMBL AU164879 [CCGACGCACCGCCGCCTCTCAGCTCGGAGCAAAAGGCAGATGCATCAACGTGATGTGTTTTTGGAATGGCTTAGACCTATACAAGAGGAATCACTGANATCTGTACCACTAGATTAGTATTAGTTTGGCTTGGNCAAGAAACGGAGCAGCTGAAATCTGAACACCTCTTTTGATGTTGCTACAAATTTATTATATTAGTATCAATTACTATCANNAAAAANAAAAAANAANN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13948#1 ------------------------------------------------------------
consensus_13948#2 ------------------------------------------------------------
consensus_13948#0 GGACGGGAGGCTTCCTCCTCCTCCTCCTACTCGAGACTCGACGCCGCCACCTCCACCTCC 60
consensus_13948#1 ------------------------------------------------------------
consensus_13948#2 ------------------------------------------------------------
consensus_13948#0 CGTCTCGTCTCCAGAAGCTTCTGGAACACCCTTCCGGCTTCAATTCCCCCCTGCTCGGGT 120
consensus_13948#1 ------------------------------------------------------------
consensus_13948#2 ------------------------------------------------------------
consensus_13948#0 CGGGTAGCTCCCTTCCATCATCCATGGCCGACGCCACCGCCGCCCTCTCAGCTCGGAGCA 180
consensus_13948#1 ------------------------------------------------------------
consensus_13948#2 ------------------------------------------------------------
consensus_13948#0 AGGTGCAAGCTTTCCTCGAAGCGGCTCGTGCCGGTGATCTCGACTCCCTCAAGAAGCTCG 240
consensus_13948#1 ------------------------------------------------------------
consensus_13948#2 ------------------------------------------------------------
consensus_13948#0 CTGCGGCGCTCGACGAGGAGGGCAAGGGCGTCGCCGCCGTCGCTGCTGCCGTCAAGGACG 300
consensus_13948#1 ------------------------------------------------------------
consensus_13948#2 ------------------------------------------------------------
consensus_13948#0 CCAACAAGCGCACCGCCCTGCACTTCGCCGCCCGCGAGGGCCGCACCCACGTCTGTCACT 360
consensus_13948#1 ------------------------------------------------------------
consensus_13948#2 ------------------------------------------------------------
consensus_13948#0 TCCTCATCTCCGACCTCGCCCTCCCCGTCGACCCCAAGGACGACGATGGTGAAACTCCAC 420
consensus_13948#1 ------------------------------------------------------------
consensus_13948#2 ------------------------------------------------------------
consensus_13948#0 TCATCCATGCTACGCGCCAAGCCCATCTCCAAACTGTAACCTATCTGCTTCACCATGGAG 480
consensus_13948#1 ------------------------------------------------------------
consensus_13948#2 ------------------------------------------------------------
consensus_13948#0 CAGATCCTTCCGTTGCTTCTTCCCTCGGAGCCACGCCATTGCACCATGCTGCCGGCATAG 540
consensus_13948#1 ------------------------------------------------------------
consensus_13948#2 ------------------------------------------------------------
consensus_13948#0 GGAACCTGGACCTTATGAAACTATTTCTCTCCAAGGGGGTTGATGTTGAATCAGAAAGCG 600
consensus_13948#1 ------------------------------------------------------------
consensus_13948#2 ------------------------------------------------------------
consensus_13948#0 ATGCCGGCACACCCCTCATATGGGCTGCTGGTCATGGACAGCAAGAGGCAGTCAAACTTT 660
consensus_13948#1 ------------------------------------------------------------
consensus_13948#2 ------------------------------------------------------------
consensus_13948#0 TGCTTCAACACGATGCTAAGCCAAATACTGAAAACGATGATGGTATTACGCCTTTGTTGT 720
consensus_13948#1 ------------------------------------------------------------
consensus_13948#2 ------------------------------------------------------------
consensus_13948#0 CTGCTGTTGCAGCGGGTTCCCTCCCATGCTTGGATATTCTAATTCAGGCAGGTGCACATC 780
consensus_13948#1 ------------------------------------------------------------
consensus_13948#2 ------------------------------------------------------------
consensus_13948#0 CGAATATCAGAGCTGGTGGAGCAACCCCATTACATATTGCTGCAGATGGTGGAAACATGG 840
consensus_13948#1 ------------------------------------------------------------
consensus_13948#2 ------------------------------------------------------------
consensus_13948#0 AAATAATAAATTGTTTACTTAAAGCTGGAAGTGACCCCAATGCATGTGATGATGATGGAC 900
consensus_13948#1 ------------------------------------------------------------
consensus_13948#2 ------------------------------------------------------------
consensus_13948#0 TAAAGCCAATACAGGTTGCTGCTTTGAGGAATAACCGTGAAGTTGTGGAACTTCTTTTAC 960
consensus_13948#1 ------------------------------------------------------------
consensus_13948#2 ------------------------------------------------------------
consensus_13948#0 CTTTGACATCACCAATTCCAGGTGTTTCGAGTTGGAGTATTGATGGAATTATAGAATACA 1020
consensus_13948#1 -------------------------------------------------------CAGAT 5
consensus_13948#2 ------------------------------------------------------------
consensus_13948#0 CTAAATCAGTCGAGGAAAAGGCACAGGTAAAGGAAGCTACAACTCAGAAAGCAGACAGAT 1080
consensus_13948#1 TACAAATACCACAACTTGTTGAGGTGTCATCTGAGGCAAAAGAGAGATCATTGGAGGCAA 65
consensus_13948#2 ------------------------------------------------------------
consensus_13948#0 TACAAGTACCACAACTTGTTGAGGTGTCATCTGAGGCAAAAGAGAGATCATTGGAGGCAA 1140
consensus_13948#1 AATCGAGAGGTGATGATGCCTTCAGAAATAAAGACTACCTAGTAGCAGTAGATGCCTACA 125
consensus_13948#2 ------------------------------------------------------------
consensus_13948#0 AATCGAGAGGTGATGATGCCTTCAGAAATAAAGACTACCTAGTAGCAGTAGATGCCTACA 1200
consensus_13948#1 CACAGGCTATTGAGTTGAATCCAAACGACGCCACGTTGCATTCAAACAGAAGCCTTTGCT 185
consensus_13948#2 ------------------------------------------------------------
consensus_13948#0 CACAGGCTATTGAGTTAAATCCAAACGACGCCACGTTGCATTCAAACAGAAGCCTTTGCT 1260
consensus_13948#1 GGCTACGGGCAGGGCAAGCTGAACGTGCTCTGGAGGATGCAAGAGCATGTCGAGCGCTGA 245
consensus_13948#2 ------------------------------------------------------------
consensus_13948#0 GGCTACGGGCAGGGCAAGCTGAACGTGCTCTGGAGGATGCAAGAGCATGTCGAGCGCTGA 1320
consensus_13948#1 GGCCAGACTGGGCGAAAGCTTGCTACAGGGAAGGCGCGGCACTGCGCCTGCTGCAGAGGT 305
consensus_13948#2 ------------------------------------------------------------
consensus_13948#0 GGCCAGACTGGGCGAAAGCTTGCTACAGGGAAGGCGCGGCACTGCGCCTGCTGCAGAGGT 1380
consensus_13948#1 TCGAAGAAGCCGCGAATGCCTTCTATGAGGGGGTGCAGCTTGAGCCAGAGAACGGCGAGC 365
consensus_13948#2 ------------------------------------------------------------
consensus_13948#0 TCGAAGAAGCCGCGAATGCCTTCTATGAGGGGGTGCAGCTTGAGCCAGAGAACGGCGAGC 1440
consensus_13948#1 TTGTGAGCGCGTTCAGGTAGTAAAGCCTTCCTCTGTGAGCAAAGAAAAGCAATGAATTCC 425
consensus_13948#2 ------------------------------------------------------------
consensus_13948#0 TTGTGAGCGCGTTCAGG------------------------------------------- 1457
consensus_13948#1 TCCGTTGTTTAGCAATTAACATAGACATATATAGGGTGTCGTTATGATTGGTTTGGAACT 485
consensus_13948#2 ------------------------------------------------------------
consensus_13948#0 ------------------------------------------------------------
consensus_13948#1 CATGTGTGTATGTGTTTGTTATTCCATGCGACAAGTGAAGTTGATTACTTAAACTGATTG 545
consensus_13948#2 ------------------------------------------------------------
consensus_13948#0 ------------------------------------------------------------
consensus_13948#1 ACAGGGAGGCGGTTGAAGCCGGGAGGAAATTCCATGGGACGGACAAGAAGCAAAAGGCAG 605
consensus_13948#2 --------------------CCGACGCACCGCCGCCTCTCAG-CTCGGAGCAAAAGGCAG 39
consensus_13948#0 -----GAGGCGGTTGAAGCCGGGAGGAAATTCCATGGGACGGACAAGAAGCAAAAGGCAG 1512
** * * ** * * * * ************
consensus_13948#1 ATGCATCAACGTGATGTGTTTTTGGAATGGCTTAGACCTATACAAGGAGGAATCACTGAA 665
consensus_13948#2 ATGCATCAACGTGATGTGTTTTTGGAATGGCTTAGACCTATACAAG-AGGAATCACTGAN 98
consensus_13948#0 ATGCATCAACGTGATGTGTTTTTGGAATGGCTTAGACCTATACAAGGAGGAATCACTGAA 1572
********************************************** ************
consensus_13948#1 -TCTGTACCACTAGATTAGTATTAGTTTGGCTTGGCCAAGAAACGGAGCAGCTGAAATCT 724
consensus_13948#2 ATCTGTACCACTAGATTAGTATTAGTTTGGCTTGGNCAAGAAACGGAGCAGCTGAAATCT 158
consensus_13948#0 -TCTGTACCACTAGATTAGTATTAGTTTGGCTTGGCCAAGAAACGGAGCAGCTGAAATCT 1631
********************************** ************************
consensus_13948#1 GAACACCTCTTTTGATGTTGCTACAAGTTTATTATATTAGTATCAATTACTATCAGATGA 784
consensus_13948#2 GAACACCTCTTTTGATGTTGCTACAAATTTATTATATTAGTATCAATTACTATCANNAAA 218
consensus_13948#0 GAACACCTCTTTTGATGTTGCTACAAATTTATTATATTAGTATCAATTACTATCAGATTG 1691
************************** ****************************
consensus_13948#1 AAAAAAAGA--------------------------------------------------- 793
consensus_13948#2 AANAAAAAANAANN---------------------------------------------- 232
consensus_13948#0 AATTCTGTTTGTGTCGTGGCTGGTTCTAGATTCGAGTGGCTAAACTGTACCCATGTTCTT 1751
**
consensus_13948#1 ------------------------
consensus_13948#2 ------------------------
consensus_13948#0 CAGCATTTCTTTAATCTACGGTAT 1775
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||