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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13956#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1223 fasta sequence
[GCGCTGCGCCGTGGTAAGCCCATCTCTCTCCCGGCCTTCCCGGCTCGACGTTCGTTGTGGGGGGCGTGTTTTGCGCCCGAGGATTGGTGGGTTGGCGGGGGGATGGGGATTGGGGCGTCGGACGAGCTGCTGGGCACGTTCGTGCCGATCGCCGTGTACTGGCTCTACTCGGGGCTGTACCTCGCGCTGGACGGCGTGGAGCGGCTGGACGTGTACCGGCTGCACCCCAGGGAGGAGGAGGCCGCCAAGAACGTCGTCTCCAGGGGCACCGTCGTCAGGGGCGTCCTCGTCCAGCAGGCCTTCCAGGTCGCCGTCTCGCTCACCCTCTTCGCGGTTATTGGTGATGAAAGTGATATTGAACAGAAGCAACCTTCTGCCCTTGTGATATTGCTGCAATTTGCCATTGCAATGTTCGTTATGGATACATGGCAGTACTTCATGCACAGATACATGCACATCAACAAGTTCCTATATAAACATATCCACTCCAAGCACCACACTCTTGTAGTCCCTTATTCCTTTGGAGCTCTTTACAACCATCCTCTTGAGGGTCTTATTTTGGACA-CCATTGGTGGTGCTCTCTCATTCCTCGTCTCTGGTATGACACCACGGACATCCATATTCTTTTTCTCGTTCGCAACCATCAAGACAGTGGATGATCATTGTGGTCTGTGGCTTCCTGGTAACATCCT-CCATGCGCTGTTCA-ACAACAACAGCGCTTATCAT-GACATTCATCATCAGCTCTATGGAAACAAGTACAACTTTTCACAACCATTTTTTGTCATTTGGGACAAGATACTTGGAACTTACATGCCTTACTCTATCGAGCACAGAAAAGGAGGAGGGTTTGAGTCACGGCCAGTTAAACTCAACATAGCAGAGCAGACCAAGACTGATTAGTGTATTCTCGGTCCACTACTCTCGGCTCTGTGGTACCCTGATCTTCTAACTACACTGTTGGTGTGAAATTATCACCTTGTTCGTATAGTGATGTTTTTCTTGTTCTCTATATTCTTCTTCTGTTACCTTTTGGGAGGGGTTCT-CCTTGTACCAAGGTATAGTGAGTAAATTAGTGTACTATATCAAAGAATACTAAAGCACTAAGATCCACTTGGATCTGTTTCCTGGAGATTGGCTGCATGTATTGAGCTTACATGCATGCCAATGTTAACAAGAGAAGATGATAT-TTACACTGTATGCAGCTATGCAGTAAGCCAGTAACT]
[+] EMBL AK103058 [GCGCTGCGCCGTGGTAAGCCCATCTCTCTCCCGGCCTTCCCGGCTCGACGTTCGTTGTGGGGGGCGTGTTTTGCGCCCGAGGATTGGTGGGTTGGCGGGGGGATGGGGATTGGGGCGTCGGACGAGCTGCTGGGCACGTTCGTGCCGATCGCCGTGTACTGGCTCTACTCGGGGCTGTACCTCGCGCTGGACGGCGTGGAGCGGCTGGACGTGTACCGGCTGCACCCCAGGGAGGAGGAGGCCGCCAAGAACGTCGTCTCCAGGGGCACCGTCGTCAGGGGCGTCCTCGTCCAGCAGGCCTTCCAGGTCGCCGTCTCGCTCACCCTCTTCGCGGTTATTGGTGATGAAAGTGATATTGAACAGAAGCAACCTTCTGCCCTTGTGATATTGCTGCAATTTGCCATTGCAATGTTCGTTATGGATACATGGCAGTACTTCATGCACAGATACATGCACATCAACAAGTTCCTATATAAACATATCCACTCCAAGCACCACACTCTTGTAGTCCCTTATTCCTTTGGAGCTCTTTACAACCATCCTCTTGAGGGTCTTATTTTGGACA CCATTGGTGGTGCTCTCTCATTCCTCGTCTCTGGTATGACACCACGGACATCCATATTCTTTTTCTCGTTCGCAACCATCAAGACAGTGGATGATCATTGTGGTCTGTGGCTTCCTGGTAACATCCT CCATGCGCTGTTCA ACAACAACAGCGCTTATCAT GACATTCATCATCAGCTCTATGGAAACAAGTACAACTTTTCACAACCATTTTTTGTCATTTGGGACAAGATACTTGGAACTTACATGCCTTACTCTATCGAGCACAGAAAAGGAGGAGGGTTTGAGTCACGGCCAGTTAAACTCAACATAGCAGAGCAGACCAAGACTGATTAGTGTATTCTCGGTCCACTACTCTCGGCTCTGTGGTACCCTGATCTTCTAACTACACTGTTGGTGTGAAATTATCACCTTGTTCGTATAGTGATGTTTTTCTTGTTCTCTATATTCTTCTTCTGTTACCTTTTGGGAGGGGTTCT CCTTGTACCAAGGTATAGTGAGTAAATTAGTGTACTATATCAAAGAATACTAAAGCACTAAGATCCACTTGGATCTGTTTCCTGGAGATTGGCTGCATGTATTGAGCTTACATGCATGCCAATGTTAACAAGAGAAGATGATAT TTACACTGTATGCAGCTATGCAGTAAGCCAGTAACT]
[+] EMBL CB661187 [GCGCTGCGCCGTGGTAAGCCCATCTCTCTCCCGGCCTTCCCGGCTCGACGTTCGTTGTGGGGGGCGTGTTTTGCGCCCGAGGATTGGTGGGTTGGCGGGGGGATGGGGATTGGGGCGTCGGACGAGCTGCTGGGCACGTTCGTGCCGATCGCCGTGTACTGGCTCTACTCGGGGCTGTACCTCGCGCTGGACGGCGTGGAGCGGCTGGACGTGTACCGGCTGCACCCCAGGGAGGAGGAGGCCGCCAAGAACGTCGTCTCCAGGGGCACCGTCGTCAGGGGCGTCCTCGTCCAGCAGGCCTTCCAGGTCGCCGTCTCGCTCACCCTCTTCGCGGTTATTGGTGATGAAAGTGATATTGAACAGAAGCAACCTTCTGCCCTTGTGATATTGCTGCAATTTGCCATTGCAATGTTCGTTATGGATACATGGCAGTACTTCATGCACAGATACATGCACATCAACAAGTTCCTATATAAACATATCCACTCCAAGCACCACACTCTTGTAGTCCCTTATTCCTTTGGAGCTCTTTACAACCATCCTCTTGAGGGTCTTATTTTGGACA CCATTGGTGGTGCTCTCTCATTCCTCGTCTCTGGTATGACACCACGGACATCCATATTCTTTTTCTCGTTCGCAACCATCAAGACAGTGGATGATCATTGTGGTCTGTGGCTTCCTGGTAACATCCT CCATGCGCTGTTCA ACAACAACAGC ]
[+] EMBL AU063911 [GCGCTGCGCCGTGGTAAGCCCATCTCTCTCCCGGCCTTCCCGGCTCGACGTTCGTTGTGGGGGGCGTGTTTTGCGCCCGAGGATTGGTGGGTTGGCGGGGGGATGGGGATTGGGGCGTCGGACGAGCTGCTGGGCACGTTCGTG CGATCGCCGTGTACTGGCTCTACTCGGGGCTGTACCTCGCGCTGGACGGCGTGGAGCGGCTGGACGTGTACCGGCTGCACCCCAGGGAGGAGGAGGCCGCCAAGAACGTCGTCTCCAGGGGCACCGTCGTCAGGGGCGTCCTCGTCCANCAAGCCTTCCAGGTCGCCGTCTCGCTCAACCTCTTCGCGGTTATTNGTGATGAAA TGATATTGAACAGAAGCAA CTTCTGCCCTTGTGANATTGCTGCAATTTGCNATTGCAATGTTCGTAATGG ]
[+] EMBL CA998254 [ CCTTCCAGGTCGCCGTCTCGCTCACCCTCTTCGCGGTTATTGGTGATGAAAGTGATATTGAACAGAAGCAACCTTCTGCCCTTGTGATATTGCTGCAATTTGCCATTGCAATGTTCGTTATGGATACATGGCAGTACTTCATGCACAGATACATGCACATCAACAAGTTCCTATATAAACATATCCACTCCAAGCACCACACTCTTGTAGTCCCTTATTCCTTTGGAGCTCTTTACAACCATCCTCTTGAGGGTCTTATTTTGGACA CCATTGGTGGTGCTCTCTCATTCCTCGTCTCTGGTATGACACCACGGACACCCATATTCTTTTTCTCGTTCGCAACCATCAAGACAGTGGATGATCATTGTGGTCTGTGGCTTCCTGGTAACATCCT CCATGCGCTGTTCA ACAACAACAGCGCTTATCAT GACATTCATCATCAGCTCTATGGAAACAA ]
[-] EMBL CB661188 [ ATCCACTCCAAGCACCACACTCTTGTAGTCCCTTATTCCTTTGGAGCTCTTTACAACCATCCTCTTGAGGGTCTTATTTTGGACA CCATTGGTGGTGCTCTCTCATTCCTCGTCTCTGGTATGACACCACGGACATCCATATTCTTTTTCTCGTTCGCAACCATCAAGACAGTGGATGATCATTGTGGTCTGTGGCTTCCTGGTAACATCCT CCATGCGCTGTTCA ACAACAACAGCGCTTATCAT GACATTCATCATCAGCTCTATGGAAACAAGTACAACTTTTCACAACCATTTTTTGTCATTTGGGACAAGATACTTGGAACTTACATGCCTTACTCTATCGAGCACAGAAAAGGAGGAGGGTTTGAGTCACGGCCAGTTAAACTCAACATAGCAGAGCAGACCAAGACTGATTAGTGTATTCTCGGTCCACTACTCTCGGCTCTGTGGTACCCTGATCTTCTAACTACACTGTTGGTGTGAAATTATCCCCTTGTTCGTATAGTGATGTTTTTCTTGTTCTCTATATTCTTCTTCTGTTACCTTTTGGGAGGGGTTCT CCTTGTACCAAGGTATAGTGAGTAAATTAGTGTACTATATCAAAGAATACTAAAGCACTAAGATCCACTTGGATCTGTTTCCTGGAGATTGGCTGCATGTATTGAGCTTACATGCATGCCAATGTTAACAAGAGAAGATGATATGGTACACTGTATGCAGCTATG ]
[+] EMBL AU085865 [ CCCTTATTCCTTTGGAGCTCTTTACAACCATCCTCTTGAGGGTCTNATTTTGGACACCCATTGGTGGTGCTCTCTCATTCCTCGTCTCTGGTATGACACCACGGACATCCATATTCTTTTTCTCGTTCGCAACCATCAAGACAGTGGATGATCATTGTGGTCTGTGGCTTCCTGGTAACATCCT CCATGCGCTGTTCA ACAACAACAGCGCTTATCAT GACATTCATCATCAGCTCTATGGAAACAAGTACAACTTTTCACAACCATTTTTTGTCATTTGGGACAAGATACTTGGAACTTACATGCCTTACTCTATCGAGCACAGAAAAGGAGGAGGGTTTGAGTCACGGCCAGTTAAACTCAACATAGCAGAGCAGACCAAGANTGATTAGTGTATTCTCGGTCCACTACTCTCGGCTCTGTGGTACCCTGATCTTCTAACTACACTGTTGGTGTGAAATTATCACCTTGTTCGTATAGTGATGTTTTTCTTGTTCTCTATATTCTTCTTCTGTTACCTTTTGGGAGGGGTTCT CTTGTACCAAGGTATAGTGAGTAAATTAGTGTACTATATCAAAGAATACTAAAGCACTAAGATCCACTTGGATCTGTTTCCTGGAGATTGGCTGCATGTATTGAGCTTACATGCATGCCAATGTTAACAAGAGAAGATGATAT TTACACTGTAaaaa ]
[-] EMBL CB681344 [ GGAGCTCTTTACAACCATCCTCTTGAGGGTCTTATTTTGGACA CCATTGGTGGTGCTCTCTCATTCCTCGTCTCTGGTATGACACCACGGACATCCATATTCTTTTTCTCGTTCGCAACCATCAAGACAGTGGATGATCATTGTGGTCTGTGGCTTCCTGGTAACATCCT CCATGCGCTGTTCA ACAACAACAGCGCTTATCAT GACATTCATCATCAGCTCTATGGAAACAAGTACAACTTTTCACAACCATTTTTTGTCATTTGGGACAAGATACTTGGAACTTACATGCCTTACTCTATCGAGCACAGAAAAGGAGGAGGGTTTGAGTCACGGCCAGTTAAACTCAACATAGCAGAGCAGACCAAGACTGATTAGTGTATTCTCGGTCCACTACTCTCGGCTCTGTGGTACCCTGATCTTCTAACTACACTGTTGGTGTGAAATTATCACCTTGTTCGTATAGTGATGTTTTTCTTGTTCTCTATATTCTTCTTCTGTTACCTTTTGGGAGGGGTTCT CCTTGTACCAAGGTATAGTGAGTAAATTAGTGTACTATATCAAAGAATACTAAAGCACTAAGATCCACTTGGATCTGTTTCCTGGAGATTGGCTGCATGTATTGAGCTTACATGCATGCCAATGTTAACAAGAGAAGATGATAT TTACACTGTATGCATTTAAAGGGTAAGCCAGTAnc ]
[+] EMBL AK059700 [ GGTGCTCTCTCATTCCTCGTCTCTGGTATGACACCACGGACATCCATATTCTTTTTCTCGTTCGCAACCATCAAGACAGTGGATGATCATTGTGGTCTGTGGCTCCCTGGTAACATCCT CCATGCGCTGTTCA ACAACAACAGCGCTTATCAT GACATTCATCATCAGCTCTATGGAAACAAGTACAACTTTTCACAACCATTTTTTGTCATTTGGGACAAGATACTTGGAACTTACATGCCTTACTCTATCGAGCACAGAAAAGGAGGAGGGTTTGAGTCACGGCCAGTTAAACTCAACATAGCAGAGCAGACCAAGACTGATTAGTGTATTCTCGGTCCACTACTCTCGGCTCTGTGGTACCCTGATCTTCTAACTACACTGTTGGTGTGAAATTATCACCTTGTTCGTATAGTGATGTTTTTCTTGTTCTCTATATTCTTCTTCTGTTACCTTTTGGGAGGGGTTCT CCTTGTACCAAGGTATAGTGAGTAAATTAGTGTACTATATCAAAGAATACTAAAGCACTAAGATCCACTTGGATCTGTTTCCTGGAGATTGGCTGCATGTATTGAGCTTACATGCATGCCAATGTTAACAAGAGAAGATGATA ]
[+] EMBL BM419144 [ ATGATCATTGTGGTCTGTGGCTTCCTGGTAACATCCTCCCATGCGCTGTTCAGACAACAACAGCGCTTATCATGGACATTCATCATCAGCTCTATGGAAACAAGTACAACTTTTCACAACCATTTTTTGTCATGTGGGACAAGATACTTGGAACTTACATGCCTTACTCTATCGAGCACAGAAAAGGAGGAGGGTTTGAGTCACGGCCAGTTAAACTCAACATAGCAGAGCAGACCAAGACTGATTAGTGTATTCTCGGTCCACTACTCTCGGCTCTGTGGTACCCTGATCTTCTAACTACACTGTTGGTGTGAAATTATCACCTTGTTCGTATAGTGATGTTTTTCTTGTTCTCTATATTCTTCTTCTGTTACCTTTTGGGAGGGGTTCTCCCTTGTACCAAGGTATAGTGAGTAAATTAGTGTACTATATCAAAGAATACTAAAGCACTAAGATCCACTTGGATCTGTTTCCTGGAGATTGGCTGCATGTATTGAGCTTACATGCATGCCAATGTTAACAAGAGAAGATGATAC TTNCACTGTAaaaaaaaaa ]
consensusID : consensus_13956#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 883 fasta sequence
[AGCTGCTCTATGCTGATTGAAGTATATCAAAATGGTGTCCATGGAAAATAAACTGATATGCATGAATGTCCAGTTGTACGAATGCTTATGTGTCTTGAACCAATATTGTATCTTGACATTTCTTTTGGAGTTTACCTAATAGCTTTACTTGTATGGTTCTCAAACTGTTGAACTTCTATCGAACTGCAGGTTATTGGTGATGAAAGTGATATTGAACAGAAGCAACCTTCTGCCCTTGTGATATTGCTGCAATTTGCCATTGCAATGTTCGTTATGGATACATGGCAGTACTTCATGCACAGATACATGCACATCAACAAGTTCCTATATAAACATATCCACTCCAAGCACCACACTCTTGTAGTCCCTTATTCCTTTGGAGCTCTTTACAACCATCCTCTTGAGGGTCTTATTTTGGACACCATTGGTGGTGCTCTCTCATTCCTCGTCTCTGGTATGACACCACGGACATCCATATTCTTTTTCTCGTTCGCAACCATCAAGACAGTGGATGATCATTGTGGTCTGTGGCTTCCTGGTAACATCCTCCATGCGCTGTTCAACAACAACAGCGCTTATCATGACATTCATCATCAGCTCTATGGAAACAAGTACAACTTTTCACAACCATTTTTTGTCATTTGGGACAAGATACTTGGAACTTACATGCCTTACTCTATCGAGCACAGAAAAGGAGGAGGGTTTGAGTCACGGCCAGTTAAACTCAACATAGCAGAGCAGACCAAGACTGATTAGTGTATTCTCGGTCCACTACTCTCGGCTCTGTGGTACCCTGATCTTCTAACTACACTGTTGGTGTGAAATTATCACCTTGTTCGTAGAGTGATGTTTTTCTTGTTCTCTAAAAAAACAACAAAAAAGA]
[-] EMBL CB682673 [AGCTGCTCTATGCTGATTGAAGTATATCAAAATGGTGTCCATGGAAAATAAACTGATATGCATGAATGTCCAGTTGTACGAATGCTTATGTGTCTTGAACCAATATTGTATCTTGACATTTCTTTTGGAGTTTACCTAATAGCTTTACTTGTATGGTTCTCAAACTGTTGAACTTCTATCGAACTGCAGGTTATTGGTGATGAAAGTGATATTGAACAGAAGCAACCTTCTGCCCTTGTGATATTGCTGCAATTTGCCATTGCAATGTTCGTTATGGATACATGGCAGTACTTCATGCACAGATACATGCACATCAACAAGTTCCTATATAAACATATCCACTCCAAGCACCACACTCTTGTAGTCCCTTATTCCTTTGGAGCTCTTTACAACCATCCTCTTGAGGGTCTTATTTTGGACACCATTGGTGGTGCTCTCTCATTCCTCGTCTCTGGTATGACACCACGGACATCCATATTCTTTTTCTCGTTCGCAACCATCAAGACAGTGGATGATCATTGTGGTCTGTGGCTTCCTGGTAACATCCTCCATGCGCTGTTCAACAACAACAGCGCTTATCATGACATTCATCATCAGCTCTATGGAAACAAGTACAACTTTTCACAACCATTTTTTGTCATTTGGGACAAGATACTTGGAACTTACATGCCTTACTCTATCGAGCACAGAAAAGGAGGAGGGTTTGAGTCACGGCCAGTTAAACTCAACATAGCAGAGCAGACCAAGACTGATTAGTGTATTCTCGGTCCACTACTCTCGGCTCTGTGGTACCCTGATCTTCTAACTACACTGTTGGTGTGAAATTATCACCTTGTTCGTAGAGTGATGTTTTTCTTGTTCTCTAAAAAAACAACAAAAAAGA]
consensusID : consensus_13956#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 632 fasta sequence
[GCGCTGCGCCGTGGTAAGCCCATCTCTCTCCCGGCCTTCCCGGCTCGACGTTCGTTGTGGGGGGCGTGTTTTGCGCCCGAGGATTGGTGGGTTGGCGGGGGGATGGGGATTGGGGCGTCGGACGAGCTGCTGGGCACGTTCGTGCCGATCGCCGTGTACTGGCTCTACTCGGGGCTGTACCTCGCGCTGGACGGCGTGGAGCGGCTGGACGTGTACCGGCTGCACCCCAGGGAGGAGGAGGCCGCCAAGAACGTCGTCTCCAGGGGCACCGTCGTCAGGGGCGTCCTCGTCCAGCAGGCCTTCCAGGTCGCCGTCTCGCACCCTCTTCGCGGTAATCCTCCTCGCCGCCGGTTATCTCTTCCAGCATGCGGGCACCCGAGTTATTGGTTGGATGAATTGTTTCATTTTTTAGCTTTGTGGTAATCTGATGCGAAACATGCAGAATCGCTTTTTTTTTATTATTATTTTCCTTCAGAAGTGCAGAAGCAGAGATGCAAATACTTGGGGTGAATTTTGAAGTAAAATAGGCAAATTGTTGTACATGCGTCTTGATTAGATTGTTTTGGAGAACAATGAAGTAAAAATTGCTTCACACGCATTTCGATTAGATTGTTTTGGCCCACCATCACCGT]
[+] EMBL CB682672 [GCGCTGCGCCGTGGTAAGCCCATCTCTCTCCCGGCCTTCCCGGCTCGACGTTCGTTGTGGGGGGCGTGTTTTGCGCCCGAGGATTGGTGGGTTGGCGGGGGGATGGGGATTGGGGCGTCGGACGAGCTGCTGGGCACGTTCGTGCCGATCGCCGTGTACTGGCTCTACTCGGGGCTGTACCTCGCGCTGGACGGCGTGGAGCGGCTGGACGTGTACCGGCTGCACCCCAGGGAGGAGGAGGCCGCCAAGAACGTCGTCTCCAGGGGCACCGTCGTCAGGGGCGTCCTCGTCCAGCAGGCCTTCCAGGTCGCCGTCTCGCACCCTCTTCGCGGTAATCCTCCTCGCCGCCGGTTATCTCTTCCAGCATGCGGGCACCCGAGTTATTGGTTGGATGAATTGTTTCATTTTTTAGCTTTGTGGTAATCTGATGCGAAACATGCAGAATCGCTTTTTTTTTATTATTATTTTCCTTCAGAAGTGCAGAAGCAGAGATGCAAATACTTGGGGTGAATTTTGAAGTAAAATAGGCAAATTGTTGTACATGCGTCTTGATTAGATTGTTTTGGAGAACAATGAAGTAAAAATTGCTTCACACGCATTTCGATTAGATTGTTTTGGCCCACCATCACCGT]
consensusID : consensus_13956#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 587 fasta sequence
[GCGCTGCGCCGTGGTAAGCCCATCTCTCTCCCGGCCTTCCCGGCTCGACGTTCGTTGTGGGGGGCGTGTTTTGCGCCCGAGGATTGGTGGGTTGGCGGGGGGATGGGGATTGGGGCGTCGGACGAGCTGCTGGGCACGTTCGTGCCGATCGCCGTGTACTGGCTCTACTCGGGGCTGTACCTCGCGCTGGACGGCGTGGAGCGGCTGGACGTGTACCGGCTGCACCCCAGGGAGGAGGAGGCCGCCAAGAACGTCGTCTCCAGGGGCACCGTCGTCAGGGGCGTCCTCGTCCAGCAGGCCTTCCAGGTTATTGGTGATGAAAGTGATATTGAACAGAAGCGACCTTCTGCCCTTGTGATATTGCTGCAATTTGCCATTGCAATGGTCGTTATGGATACATAGCAGTACTTCATGCACAGATACCTGCGCGTCAACAAGTTCCTATATGAACATATCCACTCCAAGCACCACACTCTTGTAGTCCCTTATTCCTGTGGAGCTCTTTACAACCATCCTCTTGAGGGTCTTATTTTGGACACCATTGGTGGTGCTCTCTCATTCCTCGGCTCTGGTATGACACCACGGAC]
[+] EMBL CB681343 [GCGCTGCGCCGTGGTAAGCCCATCTCTCTCCCGGCCTTCCCGGCTCGACGTTCGTTGTGGGGGGCGTGTTTTGCGCCCGAGGATTGGTGGGTTGGCGGGGGGATGGGGATTGGGGCGTCGGACGAGCTGCTGGGCACGTTCGTGCCGATCGCCGTGTACTGGCTCTACTCGGGGCTGTACCTCGCGCTGGACGGCGTGGAGCGGCTGGACGTGTACCGGCTGCACCCCAGGGAGGAGGAGGCCGCCAAGAACGTCGTCTCCAGGGGCACCGTCGTCAGGGGCGTCCTCGTCCAGCAGGCCTTCCAGGTTATTGGTGATGAAAGTGATATTGAACAGAAGCGACCTTCTGCCCTTGTGATATTGCTGCAATTTGCCATTGCAATGGTCGTTATGGATACATAGCAGTACTTCATGCACAGATACCTGCGCGTCAACAAGTTCCTATATGAACATATCCACTCCAAGCACCACACTCTTGTAGTCCCTTATTCCTGTGGAGCTCTTTACAACCATCCTCTTGAGGGTCTTATTTTGGACACCATTGGTGGTGCTCTCTCATTCCTCGGCTCTGGTATGACACCACGGAC]
consensusID : consensus_13956#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 402 fasta sequence
[TCGTGCCGAATTCGGCACGAGCGCTCACCCTCTTCGCGGTTATTGGTGATGAAAGTGATATTGAACAGAAGCAAACCTTCTGCCCTTGTGATATTGCTGCCAATTTGGCCATTGGCAATGTTTCCTTTATGGGATACATGGCAGTACTTTCATGCACAGATACCTTGCACATTCAACAAAGTTCCTATATTTAACATTTTCCCACTTCCAAAGGCACCCACACCTCCTTGTTATTTCCCTTTAATTCCCTTTTGGGAAACCTCCTTTATAAACCATTTCCCCCTTTTGAAAGGGGTCTTTTATTTTTGGGGAAAACCCCAATGGGGGGGGGGGGGGCCCCTCCTCCAATTTCCTCCCGGTTCCCCTCGGGGTTTTGTAAACCCCCCCGGGGAAAAATCCCCC]
[+] EMBL AA754144 [TCGTGCCGAATTCGGCACGAGCGCTCACCCTCTTCGCGGTTATTGGTGATGAAAGTGATATTGAACAGAAGCAAACCTTCTGCCCTTGTGATATTGCTGCCAATTTGGCCATTGGCAATGTTTCCTTTATGGGATACATGGCAGTACTTTCATGCACAGATACCTTGCACATTCAACAAAGTTCCTATATTTAACATTTTCCCACTTCCAAAGGCACCCACACCTCCTTGTTATTTCCCTTTAATTCCCTTTTGGGAAACCTCCTTTATAAACCATTTCCCCCTTTTGAAAGGGGTCTTTTATTTTTGGGGAAAACCCCAATGGGGGGGGGGGGGGCCCCTCCTCCAATTTCCTCCCGGTTCCCCTCGGGGTTTTGTAAACCCCCCCGGGGAAAAATCCCCC]
consensusID : consensus_13956#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 248 fasta sequence
[TTAACCCTTTTGGGGAGGGGGGTTCTGCCCTTGGTGACCCCACAGGGTATAGTGGAGTAAATTAGTGGTACTGATGATGCAAAGAATGATCTAAAGCACCTAAGATCCACCTTGGGATCCTGTTTCCTGGAGATTGGCTGCATGGTATTGGAGCTTACATGCATGCCAATGTTAACAAGAGAAGATGATATTTACACTGTATGCAGCTATGCAGTAAGCCAGTAACTTTTGTGGTGCCAAAAAAAAAA]
[+] EMBL BI811929 [TTAACCCTTTTGGGGAGGGGGGTTCTGCCCTTGGTGACCCCACAGGGTATAGTGGAGTAAATTAGTGGTACTGATGATGCAAAGAATGATCTAAAGCACCTAAGATCCACCTTGGGATCCTGTTTCCTGGAGATTGGCTGCATGGTATTGGAGCTTACATGCATGCCAATGTTAACAAGAGAAGATGATATTTACACTGTATGCAGCTATGCAGTAAGCCAGTAACTTTTGTGGTGCCAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13956#1 ------------------------------------------------------------
consensus_13956#4 ------------------------------------------------------------
consensus_13956#0 GCGCTGCGCCGTGGTAAGCCCATCTCTCTCCCGGCCTTCCCGGCTCGACGTTCGTTGTGG 60
consensus_13956#5 ------------------------------------------------------------
consensus_13956#2 ------------------------------------------------------------
consensus_13956#3 ------------------------------------------------------------
consensus_13956#1 ------------------------------------------------------------
consensus_13956#4 ------------------------------------------------------------
consensus_13956#0 GGGGCGTGTTTTGCGCCCGAGGATTGGTGGGTTGGCGGGGGGATGGGGATTGGGGCGTCG 120
consensus_13956#5 ------------------------------------------------------------
consensus_13956#2 ------------------------------------------------------------
consensus_13956#3 ------------------------------------------------------------
consensus_13956#1 ------------------------------------------------------------
consensus_13956#4 ------------------------------------------------------------
consensus_13956#0 GACGAGCTGCTGGGCACGTTCGTGCCGATCGCCGTGTACTGGCTCTACTCGGGGCTGTAC 180
consensus_13956#5 ------------------------------------------------------------
consensus_13956#2 ------------------------------------------------------------
consensus_13956#3 ------------------------------------------------------------
consensus_13956#1 ------------------------------------------------------------
consensus_13956#4 ------------------------------------------------------------
consensus_13956#0 CTCGCGCTGGACGGCGTGGAGCGGCTGGACGTGTACCGGCTGCACCCCAGGGAGGAGGAG 240
consensus_13956#5 ------------------------------------------------------------
consensus_13956#2 ------------------------------------------------------------
consensus_13956#3 ------------------------------------------------------------
consensus_13956#1 ------------------------------------------------------------
consensus_13956#4 ------------------------------------------------------------
consensus_13956#0 GCCGCCAAGAACGTCGTCTCCAGGGGCACCGTCGTCAGGGGCGTCCTCGTCCAGCAGGCC 300
consensus_13956#5 ------------------------------------------------------------
consensus_13956#2 ------------------------------------------------------------
consensus_13956#3 ------------------------------------------------------------
consensus_13956#1 ------------------------------------------------------------
consensus_13956#4 ------------------------------------------------------------
consensus_13956#0 TTCCAGGTCGCCGTCTCGCTCACCCTCTTCGCGGTTATTGGTGATGAAAGTGATATTGAA 360
consensus_13956#5 ------------------------------------------------------------
consensus_13956#2 ------------------------------------------------------------
consensus_13956#3 ------------------------------------------------------------
consensus_13956#1 ------------------------------------------------------------
consensus_13956#4 ------------------------------------------------------------
consensus_13956#0 CAGAAGCAACCTTCTGCCCTTGTGATATTGCTGCAATTTGCCATTGCAATGTTCGTTATG 420
consensus_13956#5 ------------------------------------------------------------
consensus_13956#2 ------------------------------------------------------------
consensus_13956#3 ------------------------------------------------------------
consensus_13956#1 ------------------------------------------------------------
consensus_13956#4 ------------------------------------------------------------
consensus_13956#0 GATACATGGCAGTACTTCATGCACAGATACATGCACATCAACAAGTTCCTATATAAACAT 480
consensus_13956#5 ------------------------------------------------------------
consensus_13956#2 ------------------------------------------------------------
consensus_13956#3 ------------------------------------------------------------
consensus_13956#1 ------------------------------------------------------------
consensus_13956#4 ------------------------------------------------------------
consensus_13956#0 ATCCACTCCAAGCACCACACTCTTGTAGTCCCTTATTCCTTTGGAGCTCTTTACAACCAT 540
consensus_13956#5 ------------------------------------------------------------
consensus_13956#2 ------------------------------------------------------------
consensus_13956#3 ------------------------------------------------------------
consensus_13956#1 ------------------------------------------------------------
consensus_13956#4 ------------------------------------------------------------
consensus_13956#0 CCTCTTGAGGGTCTTATTTTGGACACCATTGGTGGTGCTCTCTCATTCCTCGTCTCTGGT 600
consensus_13956#5 ------------------------------------------------------------
consensus_13956#2 ------------------------------------------------------------
consensus_13956#3 ------------------------------------------------------------
consensus_13956#1 ------------------------------------------------------------
consensus_13956#4 ------------------------------------------------------------
consensus_13956#0 ATGACACCACGGACATCCATATTCTTTTTCTCGTTCGCAACCATCAAGACAGTGGATGAT 660
consensus_13956#5 ------------------------------------------------------------
consensus_13956#2 ------------------------------------------------------------
consensus_13956#3 ------------------------------------------------------------
consensus_13956#1 ------------------------------------------------------------
consensus_13956#4 ------------------------------------------------------------
consensus_13956#0 CATTGTGGTCTGTGGCTTCCTGGTAACATCCTCCATGCGCTGTTCAACAACAACAGCGCT 720
consensus_13956#5 ------------------------------------------------------------
consensus_13956#2 ------------------------------------------------------------
consensus_13956#3 ------------------------------------------------------------
consensus_13956#1 ------------------------------------------------------------
consensus_13956#4 ------------------------------------------------------------
consensus_13956#0 TATCATGACATTCATCATCAGCTCTATGGAAACAAGTACAACTTTTCACAACCATTTTTT 780
consensus_13956#5 ------------------------------------------------------------
consensus_13956#2 ------------------------------------------------------------
consensus_13956#3 ------------------------------------------------------------
consensus_13956#1 ------------------------------------------------------------
consensus_13956#4 ------------------------------------------------------------
consensus_13956#0 GTCATTTGGGACAAGATACTTGGAACTTACATGCCTTACTCTATCGAGCACAGAAAAGGA 840
consensus_13956#5 ------------------------------------------------------------
consensus_13956#2 ------------------------------------------------------------
consensus_13956#3 ------------------------------------------------------------
consensus_13956#1 ------------------------------AGCTGCTCTATGCTGATTGAAGTATATCAA 30
consensus_13956#4 ------------------------------------------------------------
consensus_13956#0 GGAGGGTTTGAGTCACGGCCAGTTAAACTCAACATAGCAGAGCAGACCAAGACTGATTAG 900
consensus_13956#5 ------------------------------------------------------------
consensus_13956#2 ------------------------------------------------------------
consensus_13956#3 ------------------------------------------------------------
consensus_13956#1 AATGGTGTCCATGGAAAATAAACTGATATGCATGAATGTCCAGTTGTACGAATGCTTATG 90
consensus_13956#4 ------------------------------------------------------------
consensus_13956#0 TGTATTCTCGGTCCACTACTCTCGGCTCTGTGGTACCCTGATCTTCTAACTACACTGTTG 960
consensus_13956#5 ------------------------------------------------------------
consensus_13956#2 ------------------------------------------------------------
consensus_13956#3 ------------------------------------------------------------
consensus_13956#1 TGTCTTGAACCAATATTGTATCTTGACATTTCTTTTGGAGTTTACCTAATAGCTTTACTT 150
consensus_13956#4 ----------------------------------------------------------TC 2
consensus_13956#0 GTGTGAAATTATCACCTTGTTCGTATAGTGATGTTTTTCTTGTTCTCTATATTCTTCTTC 1020
consensus_13956#5 -----------------------------------------------------------T 1
consensus_13956#2 ---------GCGCTGCGCCGTGGTAAGCCCATCTCTCTCCCGGCCTTCCCGGCTCGACGT 51
consensus_13956#3 ---------GCGCTGCGCCGTGGTAAGCCCATCTCTCTCCCGGCCTTCCCGGCTCGACGT 51
consensus_13956#1 GTATGGTTCTCAAACTGTTGAACTTCTATCGAACTGCAGGTTATTGGTGATGAAAGTGAT 210
consensus_13956#4 GTGCCGAATTCGGCA---CGAGCGCTCACCCTCTTCGCGGTTATTGGTGATGAAAGTGAT 59
consensus_13956#0 TGTTACCTTTTGGGAGG--GG--TTCT--CCTTG------TACCAAGGTATAGTG-AGTA 1067
consensus_13956#5 TAACCCTTTTGGGGAGG--GGGGTTCTGCCCTTGGTGACCCCACAGGGTATAGTGGAGTA 59
consensus_13956#2 TCGTTGTGGGGGGCGTGTTTTGCGCCCGAGGATTGGTGGGTTGGCGGGGGGATGGGGATT 111
consensus_13956#3 TCGTTGTGGGGGGCGTGTTTTGCGCCCGAGGATTGGTGGGTTGGCGGGGGGATGGGGATT 111
*
consensus_13956#1 ATTGAACAGAAGCAA-CCTTCTGCCCTT--GTGATATTGCTGC-AATTTG-CCATTG-CA 264
consensus_13956#4 ATTGAACAGAAGCAAACCTTCTGCCCTT--GTGATATTGCTGCCAATTTGGCCATTGGCA 117
consensus_13956#0 AATTAGTG-TACTAT--AT-CAAAGAAT--A--CTAAAGCAC-TAAGATCCACTT---GG 1115
consensus_13956#5 AATTAGTGGTACTGATGATGCAAAGAAT--GATCTAAAGCACCTAAGATCCACCTTG-GG 116
consensus_13956#2 GGGGCGTCGGACGAGCTGCTGGGCACGTTCGTGCCGATCGCCGTGTACTGGCTCTACTCG 171
consensus_13956#3 GGGGCGTCGGACGAGCTGCTGGGCACGTTCGTGCCGATCGCCGTGTACTGGCTCTACTCG 171
* * * *
consensus_13956#1 ATGTT--CGTTATGG-ATACATGGCAGTACTT-CATGCACAGATACAT-GCACAT-CAAC 318
consensus_13956#4 ATGTTTCCTTTATGGGATACATGGCAGTACTTTCATGCACAGATACCTTGCACATTCAAC 177
consensus_13956#0 ATC-TGTTTCCTGGAGATTGGCTGCATG-TATTG-AGCTTACATGCATGCCAATGTTAAC 1172
consensus_13956#5 ATCCTGTTTCCTGGAGATTGGCTGCATGGTATTGGAGCTTACATGCATGCCAATGTTAAC 176
consensus_13956#2 GGGCTG-TACCTCGCGCTGGACGGCGTGGAGCGGCTGGACGTGTACCGGCTGCACCCCAG 230
consensus_13956#3 GGGCTG-TACCTCGCGCTGGACGGCGTGGAGCGGCTGGACGTGTACCGGCTGCACCCCAG 230
* * * ** * * * *
consensus_13956#1 AA-GTTCCTATATA-AACATAT--CCACTCCAAGCACCACACTCTTGTAGTCCCTTATTC 374
consensus_13956#4 AAAGTTCCTATATTTAACATTTTCCCACTTCCAAAGGCACCCACACCTCCTTGTTATTTC 237
consensus_13956#0 AA-----GAGAAGATGATATTT--ACACTGTATGCAGC-TATGCAGTAAGCCAGTAACT- 1223
consensus_13956#5 AA-----GAGAAGATGATATTT--ACACTGTATGCAGC-TATGCAGTAAGCCAGTAACTT 228
consensus_13956#2 GGAGGAGGAGGCCGCCAAGAACG-TCGTCTCCAGGGGCACCGTCGTCAGGGGCGTCCTCG 289
consensus_13956#3 GGAGGAGGAGGCCGCCAAGAACG-TCGTCTCCAGGGGCACCGTCGTCAGGGGCGTCCTCG 289
* * * * *
consensus_13956#1 CTTTGGAGCTCTTTACAACCATCCTCTTGAGGGTC--TTATTTTGGACACCATTGGTGGT 432
consensus_13956#4 CCTTTAATTCCCTTTTGGGAAACCTCCTTTATAAA--CCATTTC--CCCCTTTTGAAAGG 293
consensus_13956#0 ------------------------------------------------------------
consensus_13956#5 TTGTGGTGCCAAAAAAAAAA---------------------------------------- 248
consensus_13956#2 TCCAGCAGGCCTTCCAGGTCGCCGTCTCGCACCCTCTTCGCGGTAATCCTCCTCGCCGCC 349
consensus_13956#3 TCCAGCAGGCCTTCCAGGTTATTGG------------TGATGAAAGTGATATTGAACAGA 337
consensus_13956#1 GCTCTCTCATTCCTC-GT-----CTCTGGTATGACACCACGGACATCCATATTCTTTTTC 486
consensus_13956#4 GGTCTTTTATTTTTG-GGGAAAACCCCAATGGGGGGGGGGGGGGCCCCTCCTCCAATTTC 352
consensus_13956#0 ------------------------------------------------------------
consensus_13956#5 ------------------------------------------------------------
consensus_13956#2 GGTTATCTCTTCCAGCATGCGGGCACCCGAGTTATTGGTTGGATGAATTGTTTCATTTTT 409
consensus_13956#3 AGCGACCTTCT-----------GCCCTTGTGATATTGCTGCAATTTGCCATTGCAATGGT 386
consensus_13956#1 TCGTTCGCAACCATCAAGACAGTGGATGATCATTGTGGTCTGTGGCTTCCTGGTAACATC 546
consensus_13956#4 CTCCCGGTTCCCCTCGGGGTTTTGTA-AACCCCCCCGGGGAAAAATCCCCC--------- 402
consensus_13956#0 ------------------------------------------------------------
consensus_13956#5 ------------------------------------------------------------
consensus_13956#2 TAGCTTTGT---GGTAATCTGATGCGAAACATGCAGAATCGCTTTTTTTTTATTATTATT 466
consensus_13956#3 C-GTTATG----GATACATAGCAGTACTTCATGCACAGATACCTGCGCGTCAACAA-GTT 440
consensus_13956#1 CTCCATGCGCTGTTCAACAACAACAGCGCTTATCATGACATTCATCATCAGCTCTATGGA 606
consensus_13956#4 ------------------------------------------------------------
consensus_13956#0 ------------------------------------------------------------
consensus_13956#5 ------------------------------------------------------------
consensus_13956#2 TTCCTTCAGAAGTGCAGAAGCAGAGATGCAAATACTTGGGGTGAATTTTGAAGTAAAATA 526
consensus_13956#3 CCTATATGAACATATCCACTCCAAGCACCACACTCTTGTAGTCCCTT----ATTCCTGTG 496
consensus_13956#1 AACAAGTACAACTTTTCACAACCATTTTTTGTCATTTGGGACAAGATACTTGGAACTTAC 666
consensus_13956#4 ------------------------------------------------------------
consensus_13956#0 ------------------------------------------------------------
consensus_13956#5 ------------------------------------------------------------
consensus_13956#2 GGCAAATTGTTGTACATGCGTCTTGATTAGATTGTTTTGGAGAACAATGAAGTAAAAATT 586
consensus_13956#3 GAGCTCTTTACAACCATCC-TCTTGAGGGTCTTATTTTGGACACCATTG--GTGGTGCTC 553
consensus_13956#1 ATGCCTTACTCTATCGAGCACAGAAAAGGAGGAGGGTTTGAGTCACGGCCAGTTAAACTC 726
consensus_13956#4 ------------------------------------------------------------
consensus_13956#0 ------------------------------------------------------------
consensus_13956#5 ------------------------------------------------------------
consensus_13956#2 GCTTCACACGCATTTCGATTAGATTGTTTTGGCCCACCATCACCGT-------------- 632
consensus_13956#3 TCTCATTCCTCGGCTCTGGTATGACACCACGGAC-------------------------- 587
consensus_13956#1 AACATAGCAGAGCAGACCAAGACTGATTAGTGTATTCTCGGTCCACTACTCTCGGCTCTG 786
consensus_13956#4 ------------------------------------------------------------
consensus_13956#0 ------------------------------------------------------------
consensus_13956#5 ------------------------------------------------------------
consensus_13956#2 ------------------------------------------------------------
consensus_13956#3 ------------------------------------------------------------
consensus_13956#1 TGGTACCCTGATCTTCTAACTACACTGTTGGTGTGAAATTATCACCTTGTTCGTAGAGTG 846
consensus_13956#4 ------------------------------------------------------------
consensus_13956#0 ------------------------------------------------------------
consensus_13956#5 ------------------------------------------------------------
consensus_13956#2 ------------------------------------------------------------
consensus_13956#3 ------------------------------------------------------------
consensus_13956#1 ATGTTTTTCTTGTTCTCTAAAAAAACAACAAAAAAGA 883
consensus_13956#4 -------------------------------------
consensus_13956#0 -------------------------------------
consensus_13956#5 -------------------------------------
consensus_13956#2 -------------------------------------
consensus_13956#3 -------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||