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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13961#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 796 fasta sequence
[TCNGCGGAACACGAGACACAGAGAGAGTAGAGATCGAGATCGAGTGCTAAGCTAGCTAGAGTCGACGATGGCGAAGTGGTGCAGCTTCGGCGTCGC-GTCGTCCCTCCTGCTCTGCCTCGCCATGGC-GCACG-CGCGGCGGCGGCCAG-GGCCGTGCCCGG-CGGCGACGGCT-CGACGACGGCGGCGTCGC-TCCCGGCGGCGGCGGCGGCGGGCACCGGCGCGGGCGTGGA-GGACAAGAAGAACCTC-TTCGTGGGCGTCGGCGGCATGGGGGACCTCCCGGGCTTCCCGGCCGTCGGCGGCGGCTACGGCGGGGGCTTCGGCAACAACGGCGGCGCCGTCTTCAGCGGCGTCACCGGCCCGCTCGGCGGCGTCGGGGGCGGCATGGGCAGCGTCGGCCCGGTCGGCGGGTTCGGCGGCGCCGGCGGCGGCACCCCG-TTCGGCGGGTTCGGCGGTGGCGGCGCCGGCGGCG-TCACGCCATGAACCGTAGTATTACTGAGAGCTACGTACGATCTCATGCATCTACGTGCGCCGCGTGCGTATATACGCACGCGTGGTGCACGTGTAGTAGCTAGTGTCATCTTTTGC-TTTTGAGTGTCGATCTCAGGTGAGTTGCATGCATGGTTGGGCAGGGAGGTTGGAGTTTGTAAAAGTTTGGGTTTGTGGCCTGATGGCAAGAGTCGAGTTTACTAGTAGCTTCTAGTAGTTGTGTGCTAAGTTAATTGTGTGTTGTTAAGTGCACGTGATGCATGCGAGATATGATGACTATCTTTAGTTAAAAACTAAATGGTATTCAAAAAAA]
[+] EMBL OSC26671 [TCNGCGGAACACGAGACACAGAGAGAGTAGAGATCGAAATCGAGTGCTAAGCTAGCTAGAGTCGACGATGGCGAAGTGGTGCAGCTTCGGCGTCGC GTCGTCCCTCCTGCNCTGCCTCGCCATGGC GCACG CGCGGCGGCGGCCAG GGCCGTNCCCGG CGGCNACGGCT CGACGACGGCGG ]
[+] EMBL AU069051 [ ccGCGGAACACGAGACACAGAGAGAGTAGAGATCGAGATCGAGTGCTAAGCTAGCTAGAGTCGACGATGGCGAAGTGGTGCAGCTTCGGCGTCGC GTCGTCCCTCCTGCTCTGCCTCGCCATGGC GCACG CGCGGCGGCGGCCAG GGCCGTGCCCGG CGGCGACGGCTNCGACGACGGCGGCGTCGCTTCCCGGCGGCGGCGGCGGCGGGCACCGNCGCGGGCGTGGAGGGACAAGAAGAACCTCTTTCGTGGGCGTCGGCGNAATGGGGG ]
[+] EMBL AU164289 [ AACACGAGACACAGAGAGAGTAGAGATCGAGATCGAGTGCTAAGCTAGCTAGAGTCGACGATGGCGAAGTGGTGCAGCTTCGGCGTCGC GTCGTCCCTCCTGCTCTGCCTCGCCATGGC GCACG CGCGGCGGC GCCAG GGCCGTGCCCGA CGGCGACGGCT CGACGACGGCGGCGTCNC TCCCGGCGGCGGCGGCGGCGGGCACCGGCGCGGGCGTTGA GGACAAGAAGAACCTC TTCGTGGGCGTNGGCGGCATNGGGGACCTCCCGGGCTTCCCGGCCGTCGGCGGCGGNTACGGCGGGGG ]
[+] EMBL AU173562 [ AACACGAGACACAGAGAGAGTAGAGATCGAGATCGAGTGCTAAGCTAGCTAGAGTCGACGATGGCGAAGTGGTGCAGCTTCGGCGTCGC GTCGTCCCTCCTGCTCTGCCTCGCCATGGC GCACG CGCGGCGGCGGCCAG GNCCGTGCCCGG CGGCGACGGCT CGACGACGGCGGCGTCGC TCCCNGCGGCGGCGGCGGCGGGCACCGGCGCGGGCGTGGA GGACAAGAAGAACCTC TTCGTGGGCG ]
[+] EMBL AU108774 [ angnATCGAGTGCTAAGCTAGCTAGAGTCGACGATGGCGAAGTGGTGCAGCTTCGGCGTCGC GTCGTCCCTCCTGCTCTGCCTCGCCATGGC GCACG CGCGGCGGCGGCCAGTGGCCGTGCCCGT CGGCGACGGCT CGACGACGGCGGCGT GC TCCCGGCGGCGGCGGCGGCGGGCACCGNCGCGGGCGTGGA GGACAAGAAGAACCTC TTCGTGGGCGTCGGCGGCATGGGGGACCTCCCGGGCTTCCC ]
[+] EMBL AU181549 [ TCGAGTGCTAAGCTAGCTAGAGTCGACGATGGCGAAGTGGTGCAGCTTCGGCGTCGCAGTCGTCCCTCCTGCTCTGCCTCGCCATGGCAGCACGCCGCGGCGGCGGCCAG GGCCGTGCCCGG CGGCGACGGCT CGACGACGGCGGCGTCGC TCCCGGCGGCGGCGGCGGCGGGCACCGGCGCGGGCGTGGA GGACAAGAAGAACCTC TTCGTGGGCGTCGGCGGCATGGGGGACCTCCCGGGCTTCCCGGCCGTCGGCGGCGGCTACGGCGGGGGCTTCGGCAACAACGGCGGCGCCGTCTTCAGCGGCGTCACCGGCCCGCTCGGCGGCGTCGGGGGCGGCATGGGCAGCGTCGGCCCGGTCGGCGGGTTCGGCGGCGCCGGCGGCGGCACCCCG TTCGGCGGGTTCGGCGGTGGCGGCGCCGGCG ]
[+] EMBL AU069689 [ TCGAGTGCTAAGCTAGCTAGAGTCGACGATGGCGAAGTGGTGCAGCTTCGGCGTCGC GTCGTCCCTCCTGCTCTGCCTCGCCATGGC GCACGCCGCGGCGGCGGCCAG GGCCGTGCCCGG CGGCGACGGCT CGACGACGGCGGCGTCGC TCCCGGCGGCGGCGGCGGCGGGCACCGGCGCGGGCGTGGA GGACAAGAAGAACCTC TTCGTGGGCGTCGGCGGCATGGGGGACCTCCCGGGCTTCCCGGCCGTCGGCGGCGGCTACGGCGGGGGCTTCGGCAACAACGGCGGCGCCGTCTTCAGCGGCGTCACCGGCCCGCTCGGCGGCGTCGGGGGCGGCATGGGCAGCGTCGGCCCGGTCGGCGGGTTCGGCGGCGCCGGCGGCGGCACCCCGTTTCGGCGGGTTCGGCGGTGGCGGCGCCGGCGGCG TCACGCCATGAACCGTAGTATTACTGAGAGCTACGTACGATCTCATGCATCTACGTGCGCCGCGTGCGTATATACGCACGCGTGGTGCACGTGTAGTAGCTAGTGTCATCTTTTGCTTTTTGAGTGTCGATCTCAGGTGAGTTGCATGCATGGTTGGGCAangaagg ]
[+] EMBL AU101413 [ GAGTGCTAAGCTAGCTAGAGTCGACGATGGCGAAGTGGTGCAGCTTCGGCGTCGC GTCGTCCCTCCTGCTCTGCCTCGCCATGGC GCACGCCGCGGCGGCGGCCAG GGCCGTGCCCGG CGGCGACGGCT CGACGACGGCGGCGTCGC TCCCGGCGGCGGCGGCGGCGGGCACCGGCGCGGGCGTGGA GGACAAGAAGAACCTC TTCGTGGGCGTCGGCGGCATGGGGGACCTCCCGGGCTTCCCGGCCGTCGGCGGCGGCTACGGCGGGGGCTTCGGCAACAACGGCGGCGCCGTCTTCAGCGGCGTCACCGGCCCGCTCGGCGGCGTCGGNGGCGGCATGGGCAGCGTCGGCCCGGTCGGCGGGTTCGGCGGCGCCGGCGGCGG ACCCCG TTCGGCGGGTTCGGCGGTGGCGGCGCCGGCGGCG TCACGCCA ]
[+] EMBL CF326399 [ TAGAGTCGACGATGGCGAAGTGGTGCAGCTTCGGCGTCGC GTCGTCCCTCCTGCTCTGCCTCGCCATGGC GCACGCCGCGGCGGCGGCCAG GGCCGTGCCCGG CGGCGACGGCT CGACGACGGCGGCGTCGC TCCCGGCGGCGGCGGCGGCGGGCACCGGCGCGGGCGTGGA GGACAAGAAGAACCTC TTCGTGGGCGTCGGCGGCATGGGGGACCTCCCGGGCTTCCCGGCCGTCGGCGGCGGCTACGGCGGGGGCTTCGGCAACAACGGCGGCGCCGTCTTCAGCGGCGTCACCGGCCCGCTCGGCGGCGTCGGGGGCGGCATGGGCAGCGTCGGCCCGGTCGGCGGGTTCGGCGGCGCCGGCGGCGGCACCCCG TTCGGCGGGTTCGGCGGTGGCGGCGCCGGCGGCG TCACGCCAT ]
[+] EMBL AU173564 [ CGGCGTCGC GTCGTCCCTCCTGCTCTGCCTCGCCATGGC GCACGCCGCGGCGGCGGCCAG GGCCGTGCCCGGNCGGCGACGGCT CGACGACGGCGGCGTCGC TCCCGGCGGCGGCGGCGGCGGGCACCGGCGCGGGCGTGGA GGACAAGAAGAATCTC TTCGTGGGCGTCGGCGGCATGGGGGACCTCCCGGGCTTCCCGGCCGTCGGCGGCGGCTACGGCGGGGGCTTCGGCAACAACGGCGGCGCCGTCTTCAGCGGCGTCACCGGCCCGCTCGGCGGCGTCGGGGGCGGCATGGGCAGCGTCGGCCCGGTCGGCGGGTTCGGCGGCGCCGGCGGCGGCACCCCG TTCGGCGGGTTCGGCGGTGGCGGCGCCGGCGGCGTTCACGCCATGAACCGTAGTATTACTGAGAGCTACGTACGATCTCATGTATCTACGTGCGC ]
[+] EMBL AU181550 [ GCCGTCTTCAGCGGCGTCACCGGCCCGCTCGGCGGCGTCGGGGGCGGCATGGGCAGCGTCGGCCCGGTCGGCGGGTTCGGCGGCGCCGGCGGCGGCACCCCG TTCGGCGGGTTCGGCGGTGGCGGCGCCGGCGGCG TCACGCCATGAACCGTAGTATTACTGAGAGCTACGTACGATCTCATGCATCTACGTGCGCCGCGTGCGTATATACGCACGCGTGGTGCACGTGTAGTAGCTAGTGTCATCTTTTGC TTTTGAGTGTCGATCTCAGGTGAGTTGCATGCATGGTTGGGCAGGGAGGTTGGAGTTTGTAAAAGTTTGGGTTTGTGGCCTGATGGCAAGAGTCGAGTTTACTAGTAGCTTCTAGTAGTTGTGTGCTAAGTTAATTGTGTGTTGTTAAGTGCACGTGATGCATGCGAGATATGATGACTATCTTTAGTTAAAAA ]
[+] EMBL AU101414 [ GGTTCGGCGGCGCCGGCGGCGGCACCCCG TTCGGCGGGTTCGGCGGTGGCGGCGCCGGCGGCG TCACGCCATGAACCGTAGTATTACTGAGAGCTACGTACGATCTCATGCATCTACGTGCGCCGCGTGCGTATATACGCACGCGTGGTGCACGTGTAGTAGCTAGTGTCATCTTTTGC TTTTGAGTGTCGATCTCAGGTGAGTTGCATGCATGGTTGGGCAGGGAGGTTGGAGTTTGTAAAAGTTTGGGTTTGTGGCCTGATGGCAAGAGTCGAGTTTACTAGTAGCTTCTAGTAGTTGTGTGCTAAGTTAATTGTGTGTTGTTAAGTGCACGTGATGCATGCGAGATATGATGACTATCTTTAGTTAATGACTAAATGGTATTCAAAAAAA]
consensusID : consensus_13961#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 321 fasta sequence
[GATCGAGTGCTAAGCTAGCTAGAGTCGACGATGGCGAAGTGGTGCAGCTTCGGCGTCGCTCCCGGCGGCGGCGGCGGCGGGCACCGGCGCGGGCGTGGAGGACAAGAAGAACCTCTTCGTGGGCGTCGGCGGCATGGGGGACCTCCCGGGCTTCCCGGCCGTCGGCGGCGGCTACGGCGGGGGCTTCGGCAACAACGGCGGCGNCGTCTTTCAGCGGCGTCACCGGCCCGCTCGGCGGCGTCGNGGGCGGCATGGGCAGCGTCGGCCCGGTCGNCGGGTTCGGCGNCGCGGCGNCGGCACCCCGTTCGNCGNGTTCGGCGG]
[+] EMBL OSC21211 [GATCGAGTGCTAAGCTAGCTAGAGTCGACGATGGCGAAGTGGTGCAGCTTCGGCGTCGCTCCCGGCGGCGGCGGCGGCGGGCACCGGCGCGGGCGTGGAGGACAAGAAGAACCTCTTCGTGGGCGTCGGCGGCATGGGGGACCTCCCGGGCTTCCCGGCCGTCGGCGGCGGCTACGGCGGGGGCTTCGGCAACAACGGCGGCGNCGTCTTTCAGCGGCGTCACCGGCCCGCTCGGCGGCGTCGNGGGCGGCATGGGCAGCGTCGGCCCGGTCGNCGGGTTCGGCGNCGCGGCGNCGGCACCCCGTTCGNCGNGTTCGGCGG]
consensusID : consensus_13961#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 182 fasta sequence
[CGNGTGCTAAGCTAGCTAGAGTCGACGATGGCGNAGTGGTGCAGCTTCGGCGTCGCGTCGTCCCACCTGCTCTGCCTCGCCATGGCGCACGCGCGNCGTCGNCANNGGCCGTTGNCCGTTCGNCGACGNNTCGACGACGNCGTCGTCGNNTCCCGTCGNCGNNGNCGNCGGGCACCGTTTGN]
[+] EMBL OSC27961 [CGNGTGCTAAGCTAGCTAGAGTCGACGATGGCGNAGTGGTGCAGCTTCGGCGTCGCGTCGTCCCACCTGCTCTGCCTCGCCATGGCGCACGCGCGNCGTCGNCANNGGCCGTTGNCCGTTCGNCGACGNNTCGACGACGNCGTCGTCGNNTCCCGTCGNCGNNGNCGNCGGGCACCGTTTGN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13961#0 TCNGCGGAACACGAGACACAGAGAGAGTAGAGATCGAGATCGAGTGCTAAGCTAGCTAGA 60
consensus_13961#2 ----------------------------------------CGNGTGCTAAGCTAGCTAGA 20
consensus_13961#1 -------------------------------------GATCGAGTGCTAAGCTAGCTAGA 23
** *****************
consensus_13961#0 GTCGACGATGGCGAAGTGGTGCAGCTTCGGCGTCGCGTCGTCCCTCCTGCTCTGCCTCGC 120
consensus_13961#2 GTCGACGATGGCGNAGTGGTGCAGCTTCGGCGTCGCGTCGTCCCACCTGCTCTGCCTCGC 80
consensus_13961#1 GTCGACGATGGCGAAGTGGTGCAGCTTCGGCGTCGC-TCCCGGCGGCGGCGGCGGCGGGC 82
************* ********************** ** * * ** * * **
consensus_13961#0 CATGGCGCACGCGCGGCGG-CGGCCAGGGCCGT-GCCCGG-CGGCGACGGC-TCGACGAC 176
consensus_13961#2 CATGGCGCACGCGCGNCGT-CGNCANNGGCCGTTGNCCGTTCGNCGACGNN-TCGACGAC 138
consensus_13961#1 ACCGGCGCGGGCGTGGAGGACAAGAAGAACCTCTTCGTGGGCGTCGGCGGCATGGGGGAC 142
***** *** * * * ** * ** ** ** * * ***
consensus_13961#0 GGCGGCGTCGCT-C--CCGGCGGCGGCGGCGGCGGGCACCGGCGCGGGCGTGGAGGACAA 233
consensus_13961#2 GNCGTCGTCGNNTC--CCGTCGNCGNNGNCGNCGGGCACCGTTTGN-------------- 182
consensus_13961#1 CTCCCGGGCTTCCCGGCCGTCGGCGGCGGCTACGGCGGGGGCTTCGGCAACAACGGCGGC 202
* * * * *** ** ** * * *** *
consensus_13961#0 GAAGAACCTCTTCGTGGGCGTCGGCGGCATGGGGGACCTCCCGGGCTTCCCGGCCGTCGG 293
consensus_13961#2 ------------------------------------------------------------
consensus_13961#1 GNCGTCTTTCAGCGGCGTCACCGGCCCGCTCGGCGGCGTCGNGGGCGGCATGGGCAGCGT 262
consensus_13961#0 CGGCGGCTACGGCGGGGGCTTCGGCAACAACGGCGGCGCCGTCTTCAGCGGCGTCACCGG 353
consensus_13961#2 ------------------------------------------------------------
consensus_13961#1 CGGCCCGGTCGNCGGGTTCGGCGNCGCGGCGNCGGCACCCCGTTCGNCGNGTTCGGCGG- 321
consensus_13961#0 CCCGCTCGGCGGCGTCGGGGGCGGCATGGGCAGCGTCGGCCCGGTCGGCGGGTTCGGCGG 413
consensus_13961#2 ------------------------------------------------------------
consensus_13961#1 ------------------------------------------------------------
consensus_13961#0 CGCCGGCGGCGGCACCCCGTTCGGCGGGTTCGGCGGTGGCGGCGCCGGCGGCGTCACGCC 473
consensus_13961#2 ------------------------------------------------------------
consensus_13961#1 ------------------------------------------------------------
consensus_13961#0 ATGAACCGTAGTATTACTGAGAGCTACGTACGATCTCATGCATCTACGTGCGCCGCGTGC 533
consensus_13961#2 ------------------------------------------------------------
consensus_13961#1 ------------------------------------------------------------
consensus_13961#0 GTATATACGCACGCGTGGTGCACGTGTAGTAGCTAGTGTCATCTTTTGCTTTTGAGTGTC 593
consensus_13961#2 ------------------------------------------------------------
consensus_13961#1 ------------------------------------------------------------
consensus_13961#0 GATCTCAGGTGAGTTGCATGCATGGTTGGGCAGGGAGGTTGGAGTTTGTAAAAGTTTGGG 653
consensus_13961#2 ------------------------------------------------------------
consensus_13961#1 ------------------------------------------------------------
consensus_13961#0 TTTGTGGCCTGATGGCAAGAGTCGAGTTTACTAGTAGCTTCTAGTAGTTGTGTGCTAAGT 713
consensus_13961#2 ------------------------------------------------------------
consensus_13961#1 ------------------------------------------------------------
consensus_13961#0 TAATTGTGTGTTGTTAAGTGCACGTGATGCATGCGAGATATGATGACTATCTTTAGTTAA 773
consensus_13961#2 ------------------------------------------------------------
consensus_13961#1 ------------------------------------------------------------
consensus_13961#0 AAACTAAATGGTATTCAAAAAAA 796
consensus_13961#2 -----------------------
consensus_13961#1 -----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||