These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13964#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 2003 fasta sequence [TACTAGTACATGAGATCGATCGATCGATCGGCATCTGCATCTCCGCCCCCGCCCCCGTGGATCTGAAGCGGCGGAAGANGGATGTCGTCGTCGTCTCCCTCCGGCCACCTGCTCGCCTCTGTCTCCTCCGCCCTCGCCGTCCTCCTCCTCCTCCTCGCCTGCGTCGAGCTCGGCGACGCTGCTGCCGCCGTCGGAGTCTACCGCCTCATCCAGTACGACCTCGCCGGCGCCCCTCTCGGCTCCCGCNCCGCCGCCCTCAACCACCACGCNGCCGCCCTCCCTCTCCCCGCCGCCGCCGACNTCTCCCGCTCCGCCCTCGTCGCGCCGCTCCTCGATCTCCCGCTCGCCTTCCTCCGCGACTACTTGGCGGACAAAAAATATCTGGGAGGCTTGCTCATTCTACTGCCTAAAAAACTAAACCATGAACCCAACAATGAAGACAAGGGACAAGTAAAGGCTTCTCTGGCTGAGCTGGAACAGTTGCTCTTGCATCAACAAGTGGCATATCCGGTCTACTTCGCTTTCCAGGATGACCACTTTGATAACCTGCT-GGCGGATATACGTAAAATTGCCTCTTCAGGTCAGCCAGCCTCAGCAACAACAGGAGGNTACAAG-TTGTCGTGTCTACGCCGGAACCTAGAAAAGTGGNATCTCCGACCATTTCAAATATCCA-GGGATGGGTA-CTGGATTGAAAGGAGAGGGTGAAACTGAACAACTTCCAACTATTGCCATTGTTTCAAATTATGATACTTTCGGTGCTGCACCAGCACTTTCTGTGGGAAGCGACAGCAACGGGAGTGGAGCTGTGGCTCTTCTAGAGATTGCAAGACTGTTTTCACGCCTCTATTCAAATCCTAAGACCAGAGGCAAGTACAACCTTCTGTTTGGCTTAACATCTGGTGGACCCTACAATTACAATGGAACTAACAAGTGGCTTAGAAGTTTCGATCAGCGTGTGCGTGAGAGCATTGACTATGCAATTTGCTTGAACAGCGTTGGTTCCTGGGACAATGAACTCTGGATGCATGTGTCAAAGCCACCAGAAAACCCCTACATTAAACAAATCTTTGAAGATTTCTCTGATGTCTCTAAAGAGATGGGTGTTTCAGTTGGAATCAAGCACAAGAAGATTAATGTCTCAAATCCTAGGGTTGCGTGGGAACATGAGCAGTTCTCAAGATTTAGGGTGACTGCACTAACACTTTCGGAATTGTCCTCTCCTCCTGACTTTTTAGAAAGCACCGGTGGCCTTTATGACACTA-GAGAATCAGCAGATGCTGAGTCAGTAA-TTAGAACTGTCAGATTAG-TTTCTGAAAGTCTTGCGAGACACATCTATGGACTAAAAGGAAAGAATATTGATGTTTTTGCGGAGAACAGCAGTTTAGCCATCAACCCTCACTACATCCAGT-CCTGG-TTGGATCTTTTATCACGAACACCACGGGTTGCACCGTTTCTTCAGAAGAACGATCCCTTTATAGCAGCCCTAAAGAAGGAACTATCTGAGCACACTGCTGATGTCCACGTTCAAAGCGATGTTCTTGATGGCATGTTCACTTTCTATGATGCAACAAAGGCAACTCTAAATGTATATCAGGTTGCAAGTGTTACTTTTGATTTACTGTTCCTTCTGGTGATTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGGGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTCAAGGGGGCATAATAGAATAGATTGTGCTTTGTGTATTAGTATCCAGGAACGCGCTGCTAGTTAGAAGAGCTAGACACCAGGACGACAGGCGAGACGACCCAGCTCTCCACAGCAAACAGACTTGTAATTTCAAAATTTTCATGTTCGATAGCCAATGTGAGTGGCTTCAGATACTGCAAGGCAGAAACATCACGAATTTTGACTGATGAAGCTGCATTTTGTTTTATGTTATTTTTGCTGGTGCTCGCCATTTTGGCTAAAAAAAAAA] [+] EMBL AU161220 [TACTAGTACATGAGATCGATCGATCGATCGGCATCTGCATCTCCGCCCCCGCCCCCGTGGATCTGAAGCGGCGGAAGANGGATGTCGTCGTCGTCTCCCTCCGGCCACCTGCTCGCCTCTGTCTCCTCCGCCCTCGCCGTCCTCCTCCTCCTCCTCGCCTGCGTCGAGCTCGGCGACGCTGCTGCCGCCGTCGGAGTCTACCGCCTCATCCAGTACGACCTCGCCGGCGCCCCTCTCGGCTCCCGCNCCGCCGCCCTCAACCACCACGCNGCCGCCCTCCCTCTCCCCGCCGCCGCCGACNTCTCCCGCTCCGCCCTCGTCGCGCCGCTCCTCGATCTCCCGCTCGCCTTCCTCCGCGACTACTTGGCGGACAAAAAATATCTGGGAGGCTTGCTCATTCTACTGCCTAAAAAACTAAACCATGAACCCAACAATGAAGACAAGGGACAAGTAAAGGCTTCTCTGGCTGAGCTGGAACAGTTGCTCTTGCATCAACAAGTGGCATATCCGGTCTACTTCGCTTTCCAGGATGACCACTTTGATAACCTGCTGGGCGGATATACGTAAAATTGCCTCTTCAGGTCAGCCAGCCTCAGCAACAACAGGAGGNTACAAG TTGTCGTGTCTACGCCGGAACCTAGAAAAGTGGNATCTCCGACCATTTCAAATATCCAGGGGATGGGTA CTGGATTGAAAGGAGAGGGTGAAACTG ] [+] EMBL AK064841 [ CTGCATCTCCGCCCCCGCCCCCGTGGATCTGAAGCGGCGGAAGAGGGATGTCGTCGTCGTCTCCCTCCGGCCACCTGCTCGCCTCTGTCTCCTCCGCCCTCGCCGTCCTCCTCCTCCTCCTCGCCTGCGTCGAGCTCGGCGACGCTGCTGCCGCCGTCGGAGTCTACCGCCTCATCCAGTACGACCTCGCCGGCGCCCCTCTCGGCTCCCGCGCCGCCGCCCTCAACCACCACGCCGCCGCCCTCCCTCTCCCCGCCGCCGCCGACCTCTCCCGCTCCGCCCTCGTCGCGCCGCTCCTCGATCTCCCGCTCGCCTTCCTCCGCGACTACTTGGCGGACAAAAAATATCTGGGAGGCTTGCTCATTCTACTGCCTAAAAAACTAAACCATGAACCCAACAATGAAGACAAGGGACAAGTAAAGGCTTCTCTGGCTGAGCTGGAACAGTTGCTCTTGCATCAACAAGTGCCATATCCGGTCTACTTCGCTTTCCAGGATGACCACTTTGATAACCTGCT GGCGGATATACGTAAAATTGCCTCTTCAGGTCAGCCAGCCTCAGCAACAACAGGAGGTTACAAGCTTGTCGTGTCTACGCCGGAACCTAGAAAAGTGGCATCTCCGACCATTTCAAATATCCA GGGATGGTTACCTGGATTGAAAGGAGAGGGTGAAACTGAACAACTTCCAACTATTGCCATTGTTTCAAATTATGATACTTTCGGTGCTGCACCAGCACTTTCTGTGGGAAGCGACAGCAACGGGAGTGGAGCTGTGGCTCTTCTAGAGATTGCAAGACTGTTTTCACGCCTCTATTCAAATCCTAAGACCAGAGGCAAGTACAACCTTCTGTTTGGCTTAACATCTGGTGGACCCTACAATTACAATGGAACTAACAAGTGGCTTAGAAGTTTCGATCAGCGTGTGCGTGAGAGCATTGACTATGCAATTTGCTTGAACAGCGTTGGTTCCTGGGACAATGAACTCTGGATGCATGTGTCAAAGCCACCAGAAAACCCCTACATTAAACAAATCTTTGAAGATTTCTCTGATGTCTCTAAAGAGATGGGTGTTTCAGTTGGAATCAAGCACAAGAAGATTAATGTCTCAAATCCTAGGGTTGCGTGGGAACATGAGCAGTTCTCAAGATTTAGGGTGACTGCACTAACACTTTCGGAATTGTCCTCTCCTCCTGACTTTTTAGAAAGCACCGGTGGCCTTTATGACACTA GAGAATCAGCAGATGCTGAGTCAGTAA TTAGAACTGTCAGATTAG TTTCTGAAAGTCTTGCGAGACACATCTATGGACTAAAAGGAAAGAATATTGATGTTTTTGCGGAGAACAGCAGTTTAGCCATCAACCCTCACTACATCCAGT CCTGG TTGGATCTTTTATCACGAACACCACGGGTTGCACCGTTTCTTCAGAAGAACGATCCCTTTATAGCAGCCCTAAAGAAGGAACTATCTGAGCACACTGCTGATGTCCACGTTCAAAGCGATGTTCTTGATGGCATGTTCACTTTCTATGATGCAACAAAGGCAACTCTAAATGTATATCAGGTTGCAAGTGTTACTTTTGATTTACTGTTCCTTCTGGTGATTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGGGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTCAAGGGGGCATAATAGAATAGATTGTGCTTTGTGTATTAGTATCCAGGAACGCGCTGCTAGTTAGAAGAGCTAGACACCAGGACGACAGGCGAGACGACCCAGCTCTCCACAGCAAACAGACTTGTAATTTCAAAATTTTCATGTTCGATAGCCAATGTGAGTGGCTTCAGATACTGCAAGGCAGAAACATCACGA ] [-] EMBL CB618563 [ CGGGGGCCTTTATGACACTA GAGAATCAGCAGATGCTGAGTCAGTAA TTAGAACTGTCAGATTAG TTTCTGAAAGTCTTGCGAGACACATCTATGGACTAAAAGGAAAGAATATTGATGTTTTTGCGGAGAACAGCAGTTTAGCCATCAACCCTCACTACATCCAGT CCTGG TTGGATCTTTTATCACGAACACCACGGGTTGCACCGTTTCTTCAGAAGAACGATCCCTTTATAGCAGCCCTAAAGAAGGAACTATCTGAGCACACTGCTGATGTCCACGTTCAAAGCGATGTTCTTGATGGCATGTTCACTTTCTATGATGCAACAAAGGCAACTCTAAATGTATATCAGGTTGCAAGTGTTACTTTTGATTTACTGTTCCTTCTGGTGATTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGGGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTCAAGGGGGCATAATAGAATAGATTGTGCTTTGTGTATTAGTATCCAGGAACGCGCTGCTAGTTAGAAGAGCTAGACACCAGGACGACAGGCGAGACGACCCAGCTCTCCACAGCAAACAGACTTGTAATTTCAAAATTTTCATGTTCGATAGCCAATGTGAGTGGCTTCAGATACTGCAAGGCAGAAACATCACGAATTTTGACTGATGAAGCTGCATTTTGTTTTATGTTATTTTTAAGGGTGCTCGCCATTTTGGCT ] [+] EMBL C97617 [ tTTTTGGCCACTAGGAGAATCNGCAGATGCTGATTCAGTAA TTAGAACTGTCAGATTAGTTTTCTGAAAGTCTTGCGAGACACATCTATGGACTAAAAGGAAAGAATATTGATGTTTTTGCGGAGAACAGCAGTTTAGCCATCAACCCTCACTACATCCAGT CCTGG TTGGATCTTTTATCACGAACACCACGGGTTGCACCGTTTCTTCAGAAGAACGATCCCTTTATAGCAGCCCTAAAGAAGGAACTATCTGAGCACACTGCTGATGTCCACGTTCAAAGCGATGTTCTTGATGGCATGTTCACTTTCTATGATGCAACAAAGGCAACTCTAAATGTATATCAGGTTGCAAGTGTTACTTTTGATTTACTGTTCCTTCTGGTGATTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGGGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTCAAGGGGGCATAATAGAATAGATTGTGCTTTGTGTATTAGTATCCAGGAACGCGCTGCTAGTTAGAAGAGCTAGACACCAGGACGACAGGCGAGACGACCCAGCTCTCCACAGCAAACAGACTTGTAATTTCAAAATTTTCATGTTCGATAGCCAATGTGAGTGGCTTCAGATACTGCAAGGCAGAAACATCACGAATTTTGACTGATGAAaaaaaa ] [-] EMBL CB632366 [ CAGATGCTGAGTCAGTAATTTAGAACTGTCAGATTAG TTTCTGAAAGTCTTGCGAGACACATCTATGGACTAAAAGGAAAGAATATTGATGTTTTTGCGGAGAACAGCAGTTTAGCCATCAACCCTCACTACATCCAGT CCTGG TTGGATCTTTTATCACGAACACCACGGGTTGCACCGTTTCTTCAGAAGAACGATCCCTTTATAGCAGCCCTAAAGAAGGAACTATCTGAGCACACTGCTGATGTCCACGTTCAAAGCGATGTTCTTGATGGCATGTTCACTTTCTATGATGCAACAAAGGCAACTCTAAATGTATATCAGGTTGCAAGTGTTACTTTTGATTTACTGTTCCTTCTGGTGATTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGGGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTCAAGGGGGCATAATAGAATAGATTGTGCTTTGTGTATTAGTATCCAGGAACGCGCTGCTAGTTAGAAGAGCTAGACACCAGGACGACAGGCGAGACGACCCAGCTCTCCACAGCAAACAGACTGGTAATTTCAAAATTTTCATGTTCGATAGCCAATGTGAGTGGCTTCAGATACTGCAAGGCAGAAACATCTTAAAGTTTGACTGATGAAGCTGCA ] [+] EMBL BM037919 [ CACCCAGTCCCTGGTTTGGATC TTTATCCCG ACACC CGGGTGGCACCGTTTCTTCAGAAG ACGATCCCTTTATANCAGCCCTAAAGAAGGAACTATCTGAGCACACTGCTGATGTCCACGTTCAAAGCGATGTTCTTGAT GCATGTTCACTTTCTATGATGCCACAAAGGCAACTCTAAATGTATATCA GTTGCAAGTGTTACTTTTGATTTACTGTTCCTTCTGGTGATTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGGGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTCAAGGGGGCATAATAGAATAGATTGTGCTTTGTGTATTAGTATCCAGGAACGCGCTGCTAGTTAGAAGAGCTAGACACCAGGACGACAGGCGAGACGACCCAGCTCTCCACAGC AACAGACTTGTAATTTCAAAATTTTCATGTTCGATA CCAATGTGAGTGGCTTCAGATACTGCAAGCCAGAAACATCNCGAATTTTGACTGATGAAGCTGCATTTTGTTTTATGTTATTTTTGCTGGTGCTC CCATTTTGGCTAAAAAAAAAA] [+] EMBL CB631690 [ TCTTTTATCACGAACAGGAGGGGGGGGAGGGGTTCTTCAGAAGAACGATCCCTTTATAGCAGCCCTAAAGAAGGAACTATCTGAGCACACTGCTGATGTCCACGTTCAAAGCGATGTTCTTGATGGCATGTTCACTTTCTATGATGCAACAAAGGCAACTCTAAATGTATATCAGGTTGCAAGTGTTACTTTTGATTTACTGTTCCTTCTGGTGATTGGCTCCTACCTAATGAGTTGCTTCAGTTTCCTAGTAATCACTACACGGGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTCAAGGGGGCATAATAGAATAGATTGTGCTTTGTGTATTAGTATCCAGGAACGCGCTGCTAGTTAGAAGAGCTAGACACCAGGACGACAGGCGAGACGACCCAGCTCTCCACAGCAAACAGACTTGTAATTTCAAAATTTTCATGTTCGATAGCCAATGTGAGTGGCTTCAGATACTGCAAGGCAGAAACATCACGAATTTTGACTGATGAAGCTGCATTTTGTTTTATGTTATTTTTGCTGGTGCTCGCCATTTTGGCTA ] [+] EMBL AU164814 [ AAATGTATATCAGGTTGCAAGTGTTACTTTTGATTTACTGTTCCTTCTGGTGATTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGGGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTCAAGGGGGCATAATAGAATAGATTGTGCTTTTTGTATTAGTATCCAGGAACGCGCTGCTAGTTAGAAGAGCTAGACACCAGGACGACAGGCGAGACGACCCAGCTCTCCACAGCAAACAGACTTGTAATTTCAAAATTTTCATGTTCGATAGCCAATGTGAGTGGCTTCAGATACTGCAAGGCAGAAACATCACGAATTTTGACTGATGAAGCTGCATTTTGTTTTATGTTATTTTTGCTGGTGCTCGCCATTTTGGCTAAAAA ] [+] EMBL AU069409 [ CTACACGGGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTCAAGGGGGCATAATAGAATAGATTGTGCTTTGTGTATTAGTATCCAGGAACGCGCTGCTAGTTAGAAGAGCTAGACACCAGGACGACAGGCGAGACGACCCAGCTCTCCACAGCAAACAGACTTGTAATTTCAAAATTTTCATGTTCGATAGCCAATGTGAGTGGCTTCAGATACTGCAAGGCAGAAACATCACGAATTTTGACTGATGAAGCTGCATTTTGTTTTAaaaaaaaaa ] [+] EMBL AU069410 [ TACACGGGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTCAAGGGGGCATAATAGAATAGATTGTGCTTTGTGTATTAGTATCCAGGAACGCGCTGCTAGTTAGAAGAGCTAGACACCAGGACGACAGGCGAGACGACCCAGCTCTCCACAGCAAACAGACTTGTAATTTCAAAATTTTCATGTTCGATAGCCAATGTGAGTGGCTTCAGATACTGCAAGGCAGAAACATCACGAATTTTGACTGATGAAGCTGCATTTTGTTTTAaaaaaaa ] [+] EMBL AA751425 [ ACAGCAAACAGACTTGTAATTTCAAAATTTTCATGTTCGATAGCCAATGTGAGTGGCTTCAGATACTGCAAGGCAGAAACATCACGAATTTTGACTGATGAAGCTGCATTTTGTTTTATGTTATTTTTGCTGGTGCNCGCCATTTTGGCTAccatgga ] consensusID : consensus_13964#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 718 fasta sequence [TCTGGGAGGCTTGCTCATTCTACTGCCTGAAAAACTAAACCATGAACCCAACAATGAAGACAAGGGACAAGTAAAGGCTTCTCTGGCTGAGCTGGAACAGTTGCTCTTGCATCAACAAGTGCCATATCCGGTCTACTTCGCTTTCCAGGATGACCACTTTGATAACCTGCTGGCGGATATACGTAAAATTGCCTCTTCAGGTCAGCCAGCCTCAGCAACAACAGGAGGTTACAAGCTTGTCGTGTCTACGCCGGAACCTAGAAAAGTGGCATCTCCGACCATTTCAAATATCCACGGATGGTTACCTGGATTGGATAGAGAGGGAGAAGGTGGAAACTGAACAACCTTCCACACTATTGCCCATTGGTTGCAATATTTATTGATTACTCTTTCGGTGCCTGCCACCAAGCAACTTTTCTGGTGGGGGAAAGCCGACAGGCAAACGGGGGAGTTTGGAGCCCCTGTGGCTNCNNTTCTAGGAGAATTNNGNNCAAGAACTGGTNTTTCCACCGGCCCTCCCTATTNTNCAAATTTCCCCTAAGAACCAAGAAAGGGCCAAAGTTAACAANCCCTNTCCTCGGTTNNTGGGCANNTTAACACTCCCTGGGTTGNGAACCCNNCTACCANACTNCNACCANNATGGGGAAACCTANACCCAAAGGTGGGGCCTTTANNNAANAGTTNNNTCGCAATCACAGCCCGTTGGTTGCCGNTTGNA] [+] EMBL CA753058 [TCTGGGAGGCTTGCTCATTCTACTGCCTGAAAAACTAAACCATGAACCCAACAATGAAGACAAGGGACAAGTAAAGGCTTCTCTGGCTGAGCTGGAACAGTTGCTCTTGCATCAACAAGTGCCATATCCGGTCTACTTCGCTTTCCAGGATGACCACTTTGATAACCTGCTGGCGGATATACGTAAAATTGCCTCTTCAGGTCAGCCAGCCTCAGCAACAACAGGAGGTTACAAGCTTGTCGTGTCTACGCCGGAACCTAGAAAAGTGGCATCTCCGACCATTTCAAATATCCACGGATGGTTACCTGGATTGGATAGAGAGGGAGAAGGTGGAAACTGAACAACCTTCCACACTATTGCCCATTGGTTGCAATATTTATTGATTACTCTTTCGGTGCCTGCCACCAAGCAACTTTTCTGGTGGGGGAAAGCCGACAGGCAAACGGGGGAGTTTGGAGCCCCTGTGGCTNCNNTTCTAGGAGAATTNNGNNCAAGAACTGGTNTTTCCACCGGCCCTCCCTATTNTNCAAATTTCCCCTAAGAACCAAGAAAGGGCCAAAGTTAACAANCCCTNTCCTCGGTTNNTGGGCANNTTAACACTCCCTGGGTTGNGAACCCNNCTACCANACTNCNACCANNATGGGGAAACCTANACCCAAAGGTGGGGCCTTTANNNAANAGTTNNNTCGCAATCACAGCCCGTTGGTTGCCGNTTGNA] consensusID : consensus_13964#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 531 fasta sequence [GAGCTCGTGCCGAATTCGGCACGAGATCAACCCTCACTACATCCAGTCCTGGTTGGATCTTTTATCACAAACACCACGGGTNGNNGCCGTTTCTTCNCAAAAANAATNCCTNNNTTGNNGCCCTAAAAAAGGAACTATCTGAGCACACTGCTGATTTCNCNTTCAAACCNAANTNCTTAANGGCNNGTTCACTTNCTCTNATGCANCNAAGGNNNCNCNCAATNTTTTTCNGGNNGNGAGNNTTTCTTTTNANNNACNGTNCCCCCCNGNGANGGGGTCCCCCCCANTTATNCNCTNCCCNTNCCCNGTANNCNCTNNACGGGGTCTNGANGATNTCANCANCATATTCCNGGGANNNCCNCCCCCCCNGGNNTGGGGGGNGGNNTAAAAAAAAAANTGCGGTGTGTTTTTTTTTCCACCAAACACGCCGCNNGTTTTAAAAAATANACACCCCGACNANAGGNGAGANGAANCCACCTCTCCCNCCCCAANAAANACNTTTTTTCCCAANTTTCATGTTNNATAACCCAC] [+] EMBL AA752043 [GAGCTCGTGCCGAATTCGGCACGAGATCAACCCTCACTACATCCAGTCCTGGTTGGATCTTTTATCACAAACACCACGGGTNGNNGCCGTTTCTTCNCAAAAANAATNCCTNNNTTGNNGCCCTAAAAAAGGAACTATCTGAGCACACTGCTGATTTCNCNTTCAAACCNAANTNCTTAANGGCNNGTTCACTTNCTCTNATGCANCNAAGGNNNCNCNCAATNTTTTTCNGGNNGNGAGNNTTTCTTTTNANNNACNGTNCCCCCCNGNGANGGGGTCCCCCCCANTTATNCNCTNCCCNTNCCCNGTANNCNCTNNACGGGGTCTNGANGATNTCANCANCATATTCCNGGGANNNCCNCCCCCCCNGGNNTGGGGGGNGGNNTAAAAAAAAAANTGCGGTGTGTTTTTTTTTCCACCAAACACGCCGCNNGTTTTAAAAAATANACACCCCGACNANAGGNGAGANGAANCCACCTCTCCCNCCCCAANAAANACNTTTTTTCCCAANTTTCATGTTNNATAACCCAC] consensusID : consensus_13964#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 457 fasta sequence [TTTTTATGATGCAACAAAGGCAACTTTAAATGTATATCAGGTTGCAAGGGTTACTTTGGATTTACTGTCCCTTCGGGGGATGGGCTCCTCCCTAATTATTTTTTTCAGTTTCCTAGTAATCACTCCCGGGGGTCTTGATGATTTCATCAACATATTCGGGGGCCCCCCATCACGCAAGGTCAAGGGGGCATAATAGAATAGATTGTGCTTTGTGTATTAGTATCCAGGAACGCGCTGTTAGTTAGAAGAGTTAGCCCCCAGGACGCCAGGGGAGAGGCCCCAGTTTTCCCCAGCAAACAGACTTGTAATTTCAAAATTTTCATGTTGGATACCCAATGGGAGTGGCTTCAGATACTGCAAGGCAGAAACATCAGGAATTTTGGGGGAGGAAGCGGCATTTTGTTTTATGTTATTTTTGCGGGGGCTCCCCATTTTGGCTCCCAGGGAATCAAAGGAC] [-] EMBL CB631691 [TTTTTATGATGCAACAAAGGCAACTTTAAATGTATATCAGGTTGCAAGGGTTACTTTGGATTTACTGTCCCTTCGGGGGATGGGCTCCTCCCTAATTATTTTTTTCAGTTTCCTAGTAATCACTCCCGGGGGTCTTGATGATTTCATCAACATATTCGGGGGCCCCCCATCACGCAAGGTCAAGGGGGCATAATAGAATAGATTGTGCTTTGTGTATTAGTATCCAGGAACGCGCTGTTAGTTAGAAGAGTTAGCCCCCAGGACGCCAGGGGAGAGGCCCCAGTTTTCCCCAGCAAACAGACTTGTAATTTCAAAATTTTCATGTTGGATACCCAATGGGAGTGGCTTCAGATACTGCAAGGCAGAAACATCAGGAATTTTGGGGGAGGAAGCGGCATTTTGTTTTATGTTATTTTTGCGGGGGCTCCCCATTTTGGCTCCCAGGGAATCAAAGGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13964#2 ------------------------------------------------------------ consensus_13964#3 ------------------------------------------------------------ consensus_13964#0 TACTAGTACATGAGATCGATCGATCGATCGGCATCTGCATCTCCGCCCCCGCCCCCGTGG 60 consensus_13964#1 ------------------------------------------------------------ consensus_13964#2 ------------------------------------------------------------ consensus_13964#3 ------------------------------------------------------------ consensus_13964#0 ATCTGAAGCGGCGGAAGANGGATGTCGTCGTCGTCTCCCTCCGGCCACCTGCTCGCCTCT 120 consensus_13964#1 ------------------------------------------------------------ consensus_13964#2 ------------------------------------------------------------ consensus_13964#3 ------------------------------------------------------------ consensus_13964#0 GTCTCCTCCGCCCTCGCCGTCCTCCTCCTCCTCCTCGCCTGCGTCGAGCTCGGCGACGCT 180 consensus_13964#1 ------------------------------------------------------------ consensus_13964#2 ------------------------------------------------------------ consensus_13964#3 ------------------------------------------------------------ consensus_13964#0 GCTGCCGCCGTCGGAGTCTACCGCCTCATCCAGTACGACCTCGCCGGCGCCCCTCTCGGC 240 consensus_13964#1 ------------------------------------------------------------ consensus_13964#2 ------------------------------------------------------------ consensus_13964#3 ------------------------------------------------------------ consensus_13964#0 TCCCGCNCCGCCGCCCTCAACCACCACGCNGCCGCCCTCCCTCTCCCCGCCGCCGCCGAC 300 consensus_13964#1 ------------------------------------------------------------ consensus_13964#2 ------------------------------------------------------------ consensus_13964#3 ------------------------------------------------------------ consensus_13964#0 NTCTCCCGCTCCGCCCTCGTCGCGCCGCTCCTCGATCTCCCGCTCGCCTTCCTCCGCGAC 360 consensus_13964#1 ------------------------------------------------------------ consensus_13964#2 ------------------------------------------------------------ consensus_13964#3 ------------------------------------------------------------ consensus_13964#0 TACTTGGCGGACAAAAAATATCTGGGAGGCTTGCTCATTCTACTGCCTAAAAAACTAAAC 420 consensus_13964#1 ------------------------------------------------------------ consensus_13964#2 ------------------------------------------------------------ consensus_13964#3 ------------------------------------------------------------ consensus_13964#0 CATGAACCCAACAATGAAGACAAGGGACAAGTAAAGGCTTCTCTGGCTGAGCTGGAACAG 480 consensus_13964#1 ------------------------------------------------------------ consensus_13964#2 ------------------------------------------------------------ consensus_13964#3 ------------------------------------------------------------ consensus_13964#0 TTGCTCTTGCATCAACAAGTGGCATATCCGGTCTACTTCGCTTTCCAGGATGACCACTTT 540 consensus_13964#1 ------------------------------------------------------------ consensus_13964#2 ------------------------------------------------------------ consensus_13964#3 ------------------------------------------------------------ consensus_13964#0 GATAACCTGCTGGCGGATATACGTAAAATTGCCTCTTCAGGTCAGCCAGCCTCAGCAACA 600 consensus_13964#1 ------------------------------------------------------------ consensus_13964#2 ------------------------------------------------------------ consensus_13964#3 ------------------------------------------------------------ consensus_13964#0 ACAGGAGGNTACAAGTTGTCGTGTCTACGCCGGAACCTAGAAAAGTGGNATCTCCGACCA 660 consensus_13964#1 ------------------------------------------------------------ consensus_13964#2 ------------------------------------------------------------ consensus_13964#3 ------------------------------------------------------------ consensus_13964#0 TTTCAAATATCCAGGGATGGGTACTGGATTGAAAGGAGAGGGTGAAACTGAACAACTTCC 720 consensus_13964#1 ------------------------------------------------------------ consensus_13964#2 ------------------------------------------------------------ consensus_13964#3 ------------------------------------------------------------ consensus_13964#0 AACTATTGCCATTGTTTCAAATTATGATACTTTCGGTGCTGCACCAGCACTTTCTGTGGG 780 consensus_13964#1 ------------------------------------------------------------ consensus_13964#2 ------------------------------------------------------------ consensus_13964#3 ------------------------------------------------------------ consensus_13964#0 AAGCGACAGCAACGGGAGTGGAGCTGTGGCTCTTCTAGAGATTGCAAGACTGTTTTCACG 840 consensus_13964#1 ------------------------------------------------------------ consensus_13964#2 ------------------------------------------------------------ consensus_13964#3 ------------------------------------------------------------ consensus_13964#0 CCTCTATTCAAATCCTAAGACCAGAGGCAAGTACAACCTTCTGTTTGGCTTAACATCTGG 900 consensus_13964#1 ------------------------------------------------------------ consensus_13964#2 ------------------------------------------------------------ consensus_13964#3 ------------------------------------------------------------ consensus_13964#0 TGGACCCTACAATTACAATGGAACTAACAAGTGGCTTAGAAGTTTCGATCAGCGTGTGCG 960 consensus_13964#1 ------------------------------------------------------------ consensus_13964#2 ------------------------------------------------------------ consensus_13964#3 ------------------------------------------------------------ consensus_13964#0 TGAGAGCATTGACTATGCAATTTGCTTGAACAGCGTTGGTTCCTGGGACAATGAACTCTG 1020 consensus_13964#1 ------------------------------------------------------------ consensus_13964#2 ------------------------------------------------------------ consensus_13964#3 ------------------------------------------------------------ consensus_13964#0 GATGCATGTGTCAAAGCCACCAGAAAACCCCTACATTAAACAAATCTTTGAAGATTTCTC 1080 consensus_13964#1 ------------------------------------------------------------ consensus_13964#2 ------------------------------------------------------------ consensus_13964#3 ------------------------------------------------------------ consensus_13964#0 TGATGTCTCTAAAGAGATGGGTGTTTCAGTTGGAATCAAGCACAAGAAGATTAATGTCTC 1140 consensus_13964#1 ------------------------------------------------------------ consensus_13964#2 ------------------------------------------------------------ consensus_13964#3 ------------------------------------------------------------ consensus_13964#0 AAATCCTAGGGTTGCGTGGGAACATGAGCAGTTCTCAAGATTTAGGGTGACTGCACTAAC 1200 consensus_13964#1 ------------------------------------------------------------ consensus_13964#2 ------------------------------------------------------------ consensus_13964#3 ------------------------------------------------------------ consensus_13964#0 ACTTTCGGAATTGTCCTCTCCTCCTGACTTTTTAGAAAGCACCGGTGGCCTTTATGACAC 1260 consensus_13964#1 ------------------------------------------------------------ consensus_13964#2 ------------------------------------------------------------ consensus_13964#3 ------------------------------------------------------------ consensus_13964#0 TAGAGAATCAGCAGATGCTGAGTCAGTAATTAGAACTGTCAGATTAGTTTCTGAAAGTCT 1320 consensus_13964#1 ----------------TCTGGGAGGCTTGCTCATTCTACTGCCTGAAAAACTAAACCATG 44 consensus_13964#2 --------------------------------------GAGCTCGTGCCGAATTCGGCAC 22 consensus_13964#3 ------------------------------------------------------------ consensus_13964#0 TGCGAGACACATCTATGGACTAAAAGGAAAGAATATTGATGTTTTTGCGGAGAACAGCAG 1380 consensus_13964#1 AACCCAACAATGAAGACAAGGGACAAGTAAAGGCTTCTCTGGCTGAGCTGGAACAGTTGC 104 consensus_13964#2 ----GAGATCAACCCTCACTACATCCAGTCCTGGTTGGATCTTTT-ATCACAAACACCAC 77 consensus_13964#3 ------------------------------------------------------------ consensus_13964#0 TTTAGCCATCAACCCTCACTACATCCAGTCCTGGTTGGATCTTTT-ATCACGAACACCAC 1439 consensus_13964#1 TCT-TGCATCAACAAGTGCCATATCCGGTCTACTTCGCTTTCCAGGATGACCACTTTGAT 163 consensus_13964#2 GGGTNGNNGCCGTTTCTTCNCAAAAANAATNCCTNNNTT--GNNGCCCTAAAAAAGGAAC 135 consensus_13964#3 ------------------------------------------------------------ consensus_13964#0 GGGTTGCA-CCGTTTCTTCAGAAGAACGATCCCTTTATA--GCAGCCCTAAAGAAGGAAC 1496 consensus_13964#1 AACCTGCTGGCGGATATACGTAAAATTGCCTCTTCAGGTCAGCCAGCCTCAGCAACAACA 223 consensus_13964#2 TATCTGAGCACACTGCTGAT-TTCNCNTTCAAACCNAANTNCTTAANGGCNNGTTCACTT 194 consensus_13964#3 ----------------------------------------------------------TT 2 consensus_13964#0 TATCTGAGCACACTGCTGATGTCCACGTTCAAAGCGATGTTCTTGATGGCATGTTCACTT 1556 consensus_13964#1 GGAGGTTACAAGCTTGTCGTGTCTACGCCGGAACCTAGAAAAGTGGCATCTCCGACCATT 283 ** consensus_13964#2 NCTCTNATGCANCNAAGGNNNCNCNCAATNTTTTTCNGGNNGNGAGNNTTTCTTTTNANN 254 consensus_13964#3 TTTATGATGCAACAAAGGCAACTTTAAATGTATATCAGGTTGCAAGGGTTACTTTGGATT 62 consensus_13964#0 TCTATGATGCAACAAAGGCAACTCTAAATGTATATCAGGTTGCAAGTGTTACTTTTGATT 1616 consensus_13964#1 TCAAATATCCACGGATGGTTACCTGGATTGGATAGAGAGGGAGAAGGTGGAAACTGAACA 343 ** ** * ** * * * * * ** * * consensus_13964#2 NACNGTNCC-------CCCCNGNGANGGGGTCCCCCCCANTTATNCNCTNC-CCNTNCCC 306 consensus_13964#3 TACTGTCCC-------TTCGGGGGATGGGCTCCTCCCTAATTATTTTTTTC-AGTTTCCT 114 consensus_13964#0 TACTGTTCC-------TTCTGGTGATTGGCTCCTACCTAATTATTCTCTTC-AGTTTCCT 1668 consensus_13964#1 ACCTTCCACACTATTGCCCATTGGTTGCAATATTTATTGATTACTCTTTCGGTGCCTGCC 403 * * * * * *** * * consensus_13964#2 NGTANNCNCTNNACGGGGTCTNGANGATNTCANCANCATATTCCNGGGANNNCCNCCCCC 366 consensus_13964#3 AGTAATCACTCCCGGGGGTCTTGATGATTTCATCAACATATTCGGGGGCCCCCCATCACG 174 consensus_13964#0 AGTAATCACTACACGGGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACG 1728 consensus_13964#1 ACCAAGCAACTTTTCTGGTGGGGGAAAGCCGACAGGCAAA--CGGGGGAGTTTGGAGCCC 461 * * *** * * * ** * * * * * consensus_13964#2 CCNGGNNTGGGGGGNGGNNTAAAAAAAAAANTGCGGTGTGTTTTTTTTTCCACCAAACAC 426 consensus_13964#3 CAAGGTCAAGGGGGCATAATAGAATAGATTGTGCTTTGTGTATTAGTATCCAG-GAACGC 233 consensus_13964#0 CAAGGTCAAGGGGGCATAATAGAATAGATTGTGCTTTGTGTATTAGTATCCAG-GAACGC 1787 consensus_13964#1 CTGTGGCTN----CNNTTCTAGGAGAATTNNGNNCAAGAACTGGTNTTTCCACCG---GC 514 * * ** * * * * **** * consensus_13964#2 GCCGCNNGTTTTAAAAAATANACACCCCGACNANAGGNGAGANGAANCCACC--TCTCCC 484 consensus_13964#3 GCTGTTAGTTAGAAGAGTTAGCCCCCAGGACGCCAGGGGAGAGGC-CCCAGT--TTTCCC 290 consensus_13964#0 GCTGCTAGTTAGAAGAGCTAGACACCAGGACGACAGGCGAGACGA-CCCAGC--TCTCCA 1844 consensus_13964#1 CCTCCCTATTNTNCAAATTTCCCCTAAGAACCAAGAAAGGGCCAAAGTTAACAANCCCTN 574 * ** * * * ** * * * * consensus_13964#2 NCCCCAANAAANACNTTTTTTCCCAANTTTCATGTTNNATAACCCAC------------- 531 consensus_13964#3 CAGCAAACAGACTTGTAATTTCAAAATTTTCATGTTGGATACCCAATGGGAGTGGCTTCA 350 consensus_13964#0 CAGCAAACAGACTTGTAATTTCAAAATTTTCATGTTCGATAGCCAATGTGAGTGGCTTCA 1904 consensus_13964#1 TCCTCGGTTNNTGGGCANNTTAACACTCCCTGGGTTGNGAACCCNNCT--ACCANACTNC 632 ** * *** * ** consensus_13964#2 ------------------------------------------------------------ consensus_13964#3 GATACTGCAAGGCAGAAACATCAGGAATTTTGGGGGAGGAAGCGGCATTTTGTTTTATGT 410 consensus_13964#0 GATACTGCAAGGCAGAAACATCACGAATTTTGACTGATGAAGCTGCATTTTGTTTTATGT 1964 consensus_13964#1 NACCANNATGGGGAAACCTANACCCAAAGGTGGGGCCTTTANNNAANAGTTNNNTCGCAA 692 consensus_13964#2 ----------------------------------------------- consensus_13964#3 TATTTTTGCGGGGGCTCCCCATTTTGGCTCCCAGGGAATCAAAGGAC 457 consensus_13964#0 TATTTTTGCTGGTGCTCGCCATTTTGGCTAAAAAAAAAA-------- 2003 consensus_13964#1 TCACAGCCCGTTGGTTGCCGNTTGNA--------------------- 718 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||