cluster # 13977

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Oryza sativa
cluster # 13977 cluster # 13977 Sequences # 14 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13977#0 length = 2195 sequences # 11

consensus_13977#1 length = 792 sequences # 3

consensusID : consensus_13977#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 2195
fasta sequence

                              [CTAATCCATCATCATTTTATGCGCTAATCCACTCCAGATCACGCCGCTAATCGTTATCCAAACGAATTAACAACAAATCAGTCGCGCGTTTGAAACGAGTCCACTCCACCTCCATCCAGATCAGTGTATATAAACCGCCGCGCCGTTTGTTCGTGCTGATTCTCTCTCTCTCTCTAATCAGTAGTACCCCAGATCAGTTTGTTGCTTTGCTGCTTCTTCCGGTTCCAATCTGAGAGGGGGGATTCGCGCGGGAGGCGAGGCGAGGCGGCAGCCATGGTGGGGCGGAGCTCCCTCCCGGAGGGTTCCCTCTTCCTCGGATTCGACAGCTCCACTCAGTCCCTAAAAGCTACCGTGCTGAACAACGAATTGATAATAGTAGCTTCAGATATTGTTAACTTTGATTCTGACTTACCGCACTACAAAACAGAAGGTGGTGTTTACAGAGATCCTGCAGATGATGGCCACATATTTTCACCAACAATAATGTGGGTTGAAGCCTTTGAATTGCTACTTGAGAAGCTAAAGCCAAAGATCAACTTTAGCAAGGTTGTGGCCATTTCAGGGAGTGGGCAACAACACGGCAGTGTTTATTGGAAGAAGGGTAGTCATGCGGTGTTGTCTTCCTTGGATCCTACTAAGAGCTTGTTATCCCAGCTGAAGGATGCCTTTTCTACCATGGACTCACCAATATGGATGGACAGTAGCACAACTAAGCAATGCAGAGAAATAGAAAGTGTAGTAGGCGGCGCATTGGAGCTATCAAAGTTGACAGGATCTCGTGCCTATGAGAGGTTCACTGGGCCTCAGATCCGGAAGATATACCGAACAGTTCCGCAAGTTTATGATGATACTGAGAGAATATCTTTGGTGAGTTCGTTCATGGCATCAATCCTGGTGGGGAACTATGCAAGTATTGATGAGACTGATGGTGCTGGGATGAACTTGATGGATATAAACCAGAGAACCTGGTCAAAGACTGTTTTAGAGGCAACGGCTCCTGGGCTTGAAGAGAAGCTTGGAAAGTTGGCACCAGCATATGCAGTAGCTGGTCGAATTGCTCCTTATTTTGTAGAAAGGCTTCAGTTTGATAAGAATTGCTTAGTTATTCAATGGTCTGGAGACAATCCCAATAGCCTTGCAGGTTTAACTCTGAATACTCCTGGTGACCTTGCAATTAGCCTTGGTACTAGTGATACTGTTTTTGGGATAACTGCTGAAGCTAAACCAAGTCTTGAAGGCCATGTTTTCCCTAACCCTGTTGAACCTGATGGTTATATGGTGATGCTGTGCTACAAAAATGGTTCATTGACCCGAGAAGATGTGCGGAACAGTTGCGCGGAGAAATCCTGGGATGTTTTCAACAGTTATCTAGAGAAAACTCCACCTCTAAATGGCGGAAAATTAGGATTCTACTACAAAGACCATGAAATTCTGCCGCCACTTCCAGTTGGCTTCCATCGATACATTGTTGAAAACCTCAATGATGTCACATCCAACAATCTGGTGGAACGTGAGGTGGAAGAATTTGATCCACCATCTGAGGTTCGCGCCATAATCGAA-GGCCAGCTGCTGTCAATGCGAGGCCATGCCGAGAGATTCGGCATGCCTAACCCTCCCAAGCGGATCATCGCAACCGGTGGCGCATCCTCCAACGAGCGCATCCTCCACTCAATCGCGCAGATCTTTGGCTGTCCTGTCTTTACAGTTCAGAGACCTGATTCTGCCTCGCTTGGCGCGGCACTGAGAGCTGCCCATGGCTGGCTGTGCA-ATGAGGAAGGGAGCTTCGTCCCCATCTCCTGCATGTACCAGGGTAACCTGGAGAAGACCTCCTTGGGT-GCAAAGCTCGCCGTCT-CAACCGGAGAGGGTGTGGAGGA-CAAGGAGCTCCTGGAGAAGTACACGGTGCTCATGAGGAAGAGGATGGAGATTGAGAGGCGGCTGGTGGAGAAGATTGGGCGCGCGTAGGTAGCAGCATTGCAAAGCTGCTGTCCTCGAGTCACAGTTAATTAGAGGGAAATGAAATCATTGGTAGAAA-CTTATTTATAATATATAGTTAGTAGTGTATCAAGATCATGTTATTATGTTCTTGTGCA-CGGAATAAATAATAAATGTAAATTTGCAAACTAAACAAGCTCGTCTGTTCTTTCTGTTCATCAATTAGATGAAACTTTAAATCTTCTTTAAA-----AAAAAAAAAAAAA]

[+] EMBL AK070161             [CTAATCCATCATCATTTTATGCGCTAATCCACTCCAGATCACGCCGCTAATCGTTATCCAAACGAATTAACAACAAATCAGTCGCGCGTTTGAAACGAGTCCACTCCACCTCCATCCAGATCAGTGTATATAAACCGCCGCGCCGTTTGTTCGTGCTGATTCTCTCTCTCTCTCTAATCAGTAGTACCCCAGATCAGTTTGTTGCTTTGCTGCTTCTTCCGGTTCCAATCTGAGAGGGGGGATTCGCGCGGGAGGCGAGGCGAGGCGGCAGCCATGGTGGGGCGGAGCTCCCTCCCGGAGGGTTCCCTCTTCCTCGGATTCGACAGCTCCACTCAGTCCCTAAAAGCTACCGTGCTGAACAACGAATTGATAATAGTAGCTTCAGATATTGTTAACTTTGATTCTGACTTACCGCACTACAAAACAGAAGGTGGTGTTTACAGAGATCCTGCAGATGATGGCCACATATTTTCACCAACAATAATGTGGGTTGAAGCCTTTGAATTGCTACTTGAGAAGCTAAAGCCAAAGATCAACTTTAGCAAGGTTGTGGCCATTTCAGGGAGTGGGCAACAACACGGCAGTGTTTATTGGAAGAAGGGTAGTCATGCGGTGTTGTCTTCCTTGGATCCTACTAAGAGCTTGTTATCCCAGCTGAAGGATGCCTTTTCTACCATGGACTCACCAATATGGATGGACAGTAGCACAACTAAGCAATGCAGAGAAATAGAAAGTGTAGTAGGCGGCGCATTGGAGCTATCAAAGTTGACAGGATCTCGTGCCTATGAGAGGTTCACTGGGCCTCAGATCCGGAAGATATACCGAACAGTTCCGCAAGTTTATGATGATACTGAGAGAATATCTTTGGTGAGTTCGTTCATGGCATCAATCCTGGTGGGGAACTATGCAAGTATTGATGAGACTGATGGTGCTGGGATGAACTTGATGGATATAAACCAGAGAACCTGGTCAAAGACTGTTTTAGAGGCAACGGCTCCTGGGCTTGAAGAGAAGCTTGGAAAGTTGGCACCAGCATATGCAGTAGCTGGTCGAATTGCTCCTTATTTTGTAGAAAGGCTTCAGTTTGATAAGAATTGCTTAGTTATTCAATGGTCTGGAGACAATCCCAATAGCCTTGCAGGTTTAACTCTGAATACTCCTGGTGACCTTGCAATTAGCCTTGGTACTAGTGATACTGTTTTTGGGATAACTGCTGAAGCTAAACCAAGTCTTGAAGGCCATGTTTTCCCTAACCCTGTTGAACCTGATGGTTATATGGTGATGCTGTGCTACAAAAATGGTTCATTGACCCGAGAAGATGTGCGGAACAGTTGCGCGGAGAAATCCTGGGATGTTTTCAACAGTTATCTAGAGAAAACTCCACCTCTAAATGGCGGAAAATTAGGATTCTACTACAAAGACCATGAAATTCTGCCGCCACTTCCAGTTGGCTTCCATCGATACATTGTTGAAAACCTCAATGATGTCACATCCAACAATCTGGTGGAACGTGAGGTGGAAGAATTTGATCCACCATCTGAGGTTCGCGCCATAATCGAA GGCCAGCTGCTGTCAATGCGAGGCCATGCCGAGAGATTCGGCATGCCTAACCCTCCCAAGCGGATCATCGCAACCGGTGGCGCATCCTCCAACGAGCGCATCCTCCACTCAATCGCGCAGATCTTTGGCTGTCCTGTCTTTACAGTTCAGAGACCTGATTCTGCCTCGCTTGGCGCGGCACTGAGAGCTGCCCATGGCTGGCTGTGCA ATGAGGAAGGGAGCTTCGTCCCCATCTCCTGCATGTACCAGGGTAACCTGGAGAAGACCTCCTTGGGT GCAAAGCTCGCCGTCT CAACCGGAGAGGGTGTGGAGGA CAAGGAGCTCCTGGAGAAGTACACGGTGCTCATGAGGAAGAGGATGGAGATTGAGAGGCGGCTGGTGGAGAAGATTGGGCGCGCGTAGGTAGCAGCATTGCAAAGCTGCTGTCCTCGAGTCACAGTTAATTAGAGGGAAATGAAATCATTGGTAGAAA CTTATTTATAATATATAGTTAGTAGTGTATCAAGATCATGTTATTATGTTCTTGTGCA CGGAATAAATAATAAATGTAAATTTGCAAACTAAACAAGCTCGTCTGTTCTTTCTGTTCATCAATTAGATGAAACT                                  ]
[+] EMBL CB618036             [                                                                                                                                                                                                   AGTTTGTTGCTTTGCTGCTTCTTCCGGATCCAATCTGAGAGGGGGGATTCACGCGGGAGGCGAGGCGAGGCGGCAGCCATGGTGGGGCGGAGCTCCCTCCCGGAGGGTTCCCTCTTCCTCGGATTCGACAGCTCCACTCAGTCCCTAAAAGCTACCGTGCTGAACAACGAATTGATAATAGTAGCTTCAGATATTGTTAACTTTGATTCTGACTTACCGCACTACAAAACAGAAGGTGGTGTTTACAGAGATCCTGCATATGATGGCCACATATTTTCACCAACAATAATGTGGGTTGAAGCCTTTGAATTGCTACTTGAGAAGCTAAAGCCAAAGATCAACTTTAGCAAGGTTGTGGCCATTTCAGGGAGTGGGCAACAACTCGGCAGTGTTTATTGGAAGAAGGGTAGTCATGCGGTGTTGTCTTCCTTGGATCCTACTAAGAGCTTGTTATCCCAGCTGAAGGATGCCTTTTCTACCATGGACTCACCAATATGGATGGACAGTATCACAACTAAGCAATGCAGATAAATAGAAAGTGCAGTAAGCGGCGCATTGGAGCTATCAAAGTTGACAGGATCTCGTGCCTATGAGAGGATCACTGGGCCTCAGATCCGGAAGATATACCAAACAGTTCCGCAAGTTTATGATGATACTGAGAGAATATCTTTGGAGAGTTCGTTCATGGCATCAATCCTGGTGGGGAACTATGCTAGTATTGATGAGACTGATGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CB656023             [                                                                                                                                                                                                    GTTTGTTGCTTTGCTGCTTCTTCCGGTTCCAATCTGAGAGGGGGGATTCGCGCGGGAGGCGAGGCGAGGCGGCAGCCATGGTGGGGCGGAGCTCCCTCCCGGAGGGTTCCCTCTTCCTCGGATTCGACAGCTCCACTCAGTCCCTAAAAGCTACCGTGCTGAACAACGAATTGATAATAGTAGCTTCAGATATTGTTAACTTTGATTCTGACTTACCGCACTACAAAACAGAAGGTGGTGTTTACAGAGATCCTGCAGATGATGGCCACATATTTTCACCAACAATAATGTGGGTTGAAGCCTTTGAATTGCTACTTGAGAAGCTAAAGCCAAAGATCAACTTTAGCAAGGTTGTGGCCATTTCAGGGAGTGGGCAACAACACGGCAGTGTTTATTGGAAGAAGGGTAGTCATGCGGTGTTGTCTTCCTTGGATCCTACTAAGAGCTTGTTATCCCAGCTGAAGGATGCCTTTTCTACCATGGACTCACCAATATGGATGGACAGTAGCACAACTAAGCAATGCAGAGAAATAGAAAGTGTAGTAGGCGGCGCATTGGAGCTATCAAAGTTGACAGGATCTCGTGCCTATGAGAGGTTCACTGGGCCTCAGATCCGGAAGATATACCGAACAGTTCCGCAAGTTTATGATGATACTGAGAGAATATCTTTGGTGAGTTCGTTCATGGCATCAATCCTGGTGGGGAACTATGCAAGTATTGATGAGACTGATGGTGCTGGGATGAACTTGATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CA753109             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AACTTGATGGATATAAACCAGAGAACCTGGTCAAAGACTGTTTTAGAGGCAACGGCTCCTGGGCTTGAAGAGAAGCTTGGAAAGTTGGCACCAGCATATGCAGTAGCTGGTCGAGTTGCTCCTTATTTTGTAGAAAGGCTTCAGTTTGATAAGAATTGCTTAGTTATTCAATGGTCTGGAGACAATCCCAATAGCCTTGCAGGTTTAACTCTGAATACTCCTGGTGACCTTGCAATTAGCCTTGGTACTAGTGATACTGTTTTTGGGATAACTGCTGAAGCTAAACCAAGTCTTGAAGGCCATGTTTTCCCTAACCCTGTTGAACCTGATGGTTATATGGTGATGCTGTGCTACAAAAATGGTTCATTGACCCGAGAAGATGTGCGGAACAGTTGCGCGGAGAAATCCTGGGATGTTTTCAACAGTTATCTAGAGAAAACTCCACCTCTAAATGGCGGAAAATTAGGATTCTACTACAAAGACCATGAAATTCTGCCGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CB656024             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TCTACTACAAAGACCATGAAATTCTGCCGCCACTTCCAGTTGGCTTCCATCGATACATTGTTGAAAACCTCAATGATGTCACATCCAACAATCTGGTGGAACGTGAGGTGGAAGAATTTGATCCACCATCTGAGGTTCGCGCCATAATCGAA GGCCAGCTGCTGTCAATGCGAGGCCATGCCGAGAGATTCGGCATGCCTAACCCTCCCAAGCGGATCATCGCAACCGGTGGCGCATCCTCCAACGAGCGCATCCTCCACTCAATCGCGCAGATCTTTGGCTGTCCTGTCTTTACAGTTCAGAGACCTGATTCTGCCTCGCTTGGCGCGGCACTGAGAGCTGCCCATGGCTGGCTGTGCA ATGAGGAAGGGAGCTTCGTCCCCATCTCCTGCATGTACCAGGGTAACCTGGAGAAGACCTCCTTGGGT GCAAAGCTCGCCGTCT CAACCGGAGAGGGTGTGGAGGA CAAGGAGCTCCTGGAGAAGTACACGGTGCTCATGAGGAAGAGGATGGAGATTGAGAGGCGGCTGGTGGAGAAGATTGGGCGCGCGTAGGTAGCAGCATTGCAAAGCTGCTGTCCTCGAGTCACAGTTAATTAGAGGGAAATGAAATCATTGGTAGAAA CTTATTTATAATATATAGTTAGTAGTGTATCAAGATCATGTTATTATGTTCTTGTGCA CGGAATAAATAATAAATGTAAATTTGCAAACTAAACAAGCTCGTCTGTTCTTTCTGTTCATCAATTAGATGAAACT                                  ]
[+] EMBL OS38045              [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                caTCCAGTTGGCTTCCATCGATACATTGTTGAAAACCTCAATGATGTCACATCCAACAATCTGGTGGAACGTGAGGTGGAAGAATTTGATCCACCATCTGAGGTTCGCGCCATAATCGAAGGGCCAACTTCTTTCAATGCGAGGCatcag                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CB655872             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GAAAACGTCAATGATGTCACATCCAACAATTTGGTGGAACGTGAGGTGGAAGAATTTGATCCACCATCTGAGGTTCGCGCCATAATCGAA GGCCAGCTGCTGTCAATGCGAGGCCATGCCGAGAGATTCGGCATGCCTAACCCTCCCAAGCGGATCATCGCAACCGGTGGCGCATCCTCCAACGAGCGCATCCTCCACTCAATCGCGCAGATCTTTGGCTGTCCTGTCTTTACAGTTCAGAGACCTGATTCTGCCTCGCTTGGCGCGGCACTGAGAGCTGCCCATGGCTGGCTGTGCA ATGAGGAAGGGAGCTTCGTCCCCATCTCCTGCATGTACCAGGGTAACCTGGAGAAGACCTCCTTGGGT GCAAAGCTCGCCGTCT CAACCGGAGAGGGTGTGGAGGA CAAGGAGCTCCTGGAGAAGTACACGGTGCTCATGAGGAAGAGGATGGAGATTGAGAGGCGGATGGTGGAGAAGATTGGGCGCGCGTAGGTAGCAGCATTGCAAAGCTGCTGTCCTGGAGTCACAGTTAATTAGAGGGAAATGAAATCATTGGTAGAAATCTTATTTATAAT                                                                                                                                                             ]
[-] EMBL CF326473             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ATCATCGCAACCGGTGGCGCATCCTCCAACGAGCGCATCCTCCACTCAATCGCGCAGATCTTTGGCTGTCCTGTCTTTACAGTTCAGAGACCTGATTCTGCCTCGCTTGGCGCGGCACTGAGAGCTGCCCATGGCTGGCTGTGCA ATGAGGAAGGGAGCTTCGTCCCCATCTCCTGCATGTACCAGGGTAACCTGGAGAAGACCTCCTTGGGT GCAAAGCTCGCCGTCT CAACCGGAGAGGGTGTGGAGGA CAAGGAGCTCCTGGAGAAGTACACGGTGCTCATGAGGAAGAGGATGGAGATTGAGAGGCGGCTGGTGGAGAAGATTGGGCGCGCGTAGGTAGCAGCATTGCAAAGCTGCTGTCCTCGAGTCACAGTTAATTAGAGGGAAATGAAATCATTGGTAGAAA CTTATTTATAATATATAGTTAGTAGTGTATCAAGATCATGTTATTATGTTCTTGTGCA CGGAATAAATAATAAATGTAAATTTGCAAACTAAACAAGCTCGTCTGTTCTTTCTGTTCATCAATTAGATGAAACTTTAAATCTTCTTTAAA     AAAAAAAAAAAAA]
[-] EMBL CB639261             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CTGTCCTGTCTTTACAGTTCAGAGACCTGATTCTGCCTCGCTTGGCGCGGCAATGAGAGCTGCCCATGGCTGGCTGTGCA ATGAGGAAGGGAGCTTCGTCCCCATCTCCTGCATGTACCAGGGTAACCTGGAGAAGACCTCCTTGGGT GCAAAGCTCGCCGTCT CAACCGGAGAGGGTGTGGAGGA CAAGGAGCTCCTGGAGAAGTACACGGTGCTCATGAGGAAGAGGATGGAGATTGAGAGGCGGCTGGTGGAGAAGATTGGGCGCGCGTAGGTAGCAGCATTGCAAAGCTGCTGTCCTCGAGTCACAGTTAATTAGAGGGAAATGAAATCATTGGTAGAAA TTTATTTATAATATATAGTTAGTAGTGTATCAAGATCATGTTATTATGTTTTTGTGCA CGGAATAAATAATAAATGTAAAT                                                                                       ]
[+] EMBL BI811712             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ACAGTTCAGAGACCTGATTCT CCTCGCTTGGCGCGGCACTGAGA CTGCCCAT GCT GCTGTGCACATGAGGAAGGGAGCTTCGTCCCCATCTCCTGCATGTACCA GGTAACCTGGAGAAGACCTCCTTGGGT  CAAAGCTC CCGTCG CAACCGGAGAGGGTTTGGAGGACCAAGGAGCTCCTGGAGAAGTACACGGTGCTCATGAGGAAGAGGATGGAGATTGAGA GC GCTGGTGGAGAAGATTGGGCGCGCGTAGGTAGCAGCATTGCAAAGCTGCTGTCCTCGAGTCACAGTTAATTAGAGGGAAATGAAATCATTGGTAGAAA CTTATTTATAATATATAGTTAGTAGTGTATCAAGATCATGTTATTATGTTCTTGTGCA CGGAATAAATAATAAATGTAAATTTGCAAACTAAACAAGCTCGTCTGTTCTTTCTGTTCATCAATTAGATGAAACTTTAAATCTTCTTTAAATTCTCATAAAAAAAA   ]
[+] EMBL BM421413             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           tCCTCGCTTGGC CCGCACTGAGAGCTGCCCATGGCT GCTGTGCA ATGAGGAAGGGAGCTTCGTCCCCATCTCCTGCATGTACCAGGGTAACCTGGAGAAGACCTCCTTGGGTGGCAAAGCTCGCCGTCTGCAACCGGAGAGGGTGTGGAGGA CAAGGAGCTCCTGGAGAAGTACACGGTGCTCATGAGGAAGAGGATGGAGATTGAGAGGCGGCTGGTGGAGAAGATTGGGCGCGCGTAGGTAGCAGCATTGC AAGCTGCTGTCCTCGAGTCACAGTTAATTAGAGGGCCATGAAATCATTGGTAGAAA CTTATTTATAATATATAGTTAGTAGTGTATCAAGATCATGTTATTATGTTCTTGTGCACCGGAATAAATAATAAATGTAAATTTGC AACTAAAC AGCTCGTCTGTTCTTTCTGTTCATC ATTAGATGAAACTTTAAATC    TTAAA     AAAAAAA      ]




>consensus_13977#0
CTAATCCATCATCATTTTATGCGCTAATCCACTCCAGATCACGCCGCTAATCGTTATCCA
AACGAATTAACAACAAATCAGTCGCGCGTTTGAAACGAGTCCACTCCACCTCCATCCAGA
TCAGTGTATATAAACCGCCGCGCCGTTTGTTCGTGCTGATTCTCTCTCTCTCTCTAATCA
GTAGTACCCCAGATCAGTTTGTTGCTTTGCTGCTTCTTCCGGTTCCAATCTGAGAGGGGG
GATTCGCGCGGGAGGCGAGGCGAGGCGGCAGCCATGGTGGGGCGGAGCTCCCTCCCGGAG
GGTTCCCTCTTCCTCGGATTCGACAGCTCCACTCAGTCCCTAAAAGCTACCGTGCTGAAC
AACGAATTGATAATAGTAGCTTCAGATATTGTTAACTTTGATTCTGACTTACCGCACTAC
AAAACAGAAGGTGGTGTTTACAGAGATCCTGCAGATGATGGCCACATATTTTCACCAACA
ATAATGTGGGTTGAAGCCTTTGAATTGCTACTTGAGAAGCTAAAGCCAAAGATCAACTTT
AGCAAGGTTGTGGCCATTTCAGGGAGTGGGCAACAACACGGCAGTGTTTATTGGAAGAAG
GGTAGTCATGCGGTGTTGTCTTCCTTGGATCCTACTAAGAGCTTGTTATCCCAGCTGAAG
GATGCCTTTTCTACCATGGACTCACCAATATGGATGGACAGTAGCACAACTAAGCAATGC
AGAGAAATAGAAAGTGTAGTAGGCGGCGCATTGGAGCTATCAAAGTTGACAGGATCTCGT
GCCTATGAGAGGTTCACTGGGCCTCAGATCCGGAAGATATACCGAACAGTTCCGCAAGTT
TATGATGATACTGAGAGAATATCTTTGGTGAGTTCGTTCATGGCATCAATCCTGGTGGGG
AACTATGCAAGTATTGATGAGACTGATGGTGCTGGGATGAACTTGATGGATATAAACCAG
AGAACCTGGTCAAAGACTGTTTTAGAGGCAACGGCTCCTGGGCTTGAAGAGAAGCTTGGA
AAGTTGGCACCAGCATATGCAGTAGCTGGTCGAATTGCTCCTTATTTTGTAGAAAGGCTT
CAGTTTGATAAGAATTGCTTAGTTATTCAATGGTCTGGAGACAATCCCAATAGCCTTGCA
GGTTTAACTCTGAATACTCCTGGTGACCTTGCAATTAGCCTTGGTACTAGTGATACTGTT
TTTGGGATAACTGCTGAAGCTAAACCAAGTCTTGAAGGCCATGTTTTCCCTAACCCTGTT
GAACCTGATGGTTATATGGTGATGCTGTGCTACAAAAATGGTTCATTGACCCGAGAAGAT
GTGCGGAACAGTTGCGCGGAGAAATCCTGGGATGTTTTCAACAGTTATCTAGAGAAAACT
CCACCTCTAAATGGCGGAAAATTAGGATTCTACTACAAAGACCATGAAATTCTGCCGCCA
CTTCCAGTTGGCTTCCATCGATACATTGTTGAAAACCTCAATGATGTCACATCCAACAAT
CTGGTGGAACGTGAGGTGGAAGAATTTGATCCACCATCTGAGGTTCGCGCCATAATCGAA
GGCCAGCTGCTGTCAATGCGAGGCCATGCCGAGAGATTCGGCATGCCTAACCCTCCCAAG
CGGATCATCGCAACCGGTGGCGCATCCTCCAACGAGCGCATCCTCCACTCAATCGCGCAG
ATCTTTGGCTGTCCTGTCTTTACAGTTCAGAGACCTGATTCTGCCTCGCTTGGCGCGGCA
CTGAGAGCTGCCCATGGCTGGCTGTGCAATGAGGAAGGGAGCTTCGTCCCCATCTCCTGC
ATGTACCAGGGTAACCTGGAGAAGACCTCCTTGGGTGCAAAGCTCGCCGTCTCAACCGGA
GAGGGTGTGGAGGACAAGGAGCTCCTGGAGAAGTACACGGTGCTCATGAGGAAGAGGATG
GAGATTGAGAGGCGGCTGGTGGAGAAGATTGGGCGCGCGTAGGTAGCAGCATTGCAAAGC
TGCTGTCCTCGAGTCACAGTTAATTAGAGGGAAATGAAATCATTGGTAGAAACTTATTTA
TAATATATAGTTAGTAGTGTATCAAGATCATGTTATTATGTTCTTGTGCACGGAATAAAT
AATAAATGTAAATTTGCAAACTAAACAAGCTCGTCTGTTCTTTCTGTTCATCAATTAGAT
GAAACTTTAAATCTTCTTTAAAAAAAAAAAAAAAA

consensusID : consensus_13977#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 792
fasta sequence

                              [ATAGTACCTTCAGATATTGTTAACTTTGATTCTGACTTACCGCACTACAAAACAGAAGGTGGTGTTTACAGAGATCCTGCAGATGATGGCCACATATTTTCACCAACAATAATGTGGGTTGAAGCCTTTGAATTGCTACTTGAGAAGCTAAAGCCAAAGATCAACTTTAGCAAGGTTGTGGCCATTTCAGGGAGTGGGCAACAACACGGCAGTGTTTATTGGAAGAAGGGTAGTCATGCG-GTGTTGTCTTCCTTGGATCCTACTAAGAGCTTGTTATCCCAGCTGAAGGATGCCTTTTCTACCATGGACTCACCAATATGGATGGACAGTAGCACAACTAAGCAATGCAGAGAAATAGAAAGTGTAGTAGGCGGCGCATTGGAGCTATCAAAGTTGACAGGATCTCGTGCCTATGAGAGGTTCACTGGGCCTCAGATCCGGAAGATATACCGAACAGTTCCGCAAGTTTATGATGATACTGAGAGAATATCTTTGGTGAGTTCGTTCATGGCATCAATCCTGGTGGGGAACTATGCAAGTATTGATGAGACTGATGGTGCTGGGATGAACTTGATGGATATAAACCAGAGAACCTGGTCAAAGACTGTTTTAGAGGCAACGGCTCCTGGGCTTGAAGAGAAGCTTGGAAAGTTGGCACCAGCATATGCAGTAGCTGGTCGAATTGCTCCTTATTTTGTAGAAAGGTGAGTTTCTTTTACCATTCTCCATTGTTCTTGCACTCAGTACAACTGTAAAAGAAAAGAAATTCTGGAAGACTGGAATTGNAATATC]

[+] EMBL CB655871             [ATAGTACCTTCAGATATTGTTAACTTTGATTCTGACTTACCGCACTACAAAACAGAAGGTGGTGTTTACAGAGATCCTGCAGATGATGGCCACATATTTTCACCAACAATAATGTGGGTTGAAGCCTTTGAATTGCTACTTGAGAAGCTAAAGCCAAAGATCAACTTTAGCAAGGTTGTGGCCATTTCAGGGAGTGGGCAACAACACGGCAGTGTTTATTGGAAGAAGGGTAGTCATGCG GTGTTGTCTTCCTTGGATCCTACTAAGAGCTTGTTATCCCAGCTGAAGGATGCCTTTTCTACCATGGACTCACCAATATGGATGGACAGTAGCACAACTAAGCAATGCAGAGAAATAGAAAGTGTAGTAGGCGGCGCATTGGAGCTATCAAAGTTGACAGGATCTCGTGCCTATGAGAGGTTCACTGGGCCTCAGATCCGGAAGATATACCGAACAGTTCCGCAAGTTTATGATGATACTGAGAGAATATCTTTGGTGAGTTCGTTCATGGCATCAATCCTGGTGGGGAACTATGCAAGTATTGATGAGACTGATGGTGCTGGGATGAACTTGATGGATATAAACCAGAGAACCTGGTCAAAGACTGTTTTAGAGGCAACGGCTCCTGGGCTTGAAGAGAAGCTTGGAAAGTTGGCACCAGCATATGCAGTAGCTGGTCGAATTGCTCCTTATTTTGTAGAAAGGTGAGTTTCTTTTACCATTCTCCATTGTTCTTGCACTCAGTACAACTGTAAAAGAAAAGAAATTCTGGAAGACTGGAATTGNAATATC]
[+] EMBL CB655253             [ATAGTCTTTTAAGATATTGTTAACTTTGATTCTGACTTACCGCACTACAAAACAGAAGGTGGTGTTTACAGAGATCCTCCAGATGATGGCCACATATTTTCACCAACAATAATGTGGGTTGAAGCCTTTGAATTGCTACTTGAGAAGCTAAAGCCAAAGATCAACTTTAGCAAGGTTGTGGCCATTTCAGGGAGTGGGCAACAACACGGCAGTGTTTATTGGAAGAAGGGTAGTCATGCG GTGTTGTCTTCCTTGGATCCTACTAAGAGCTTGTTATCCCAGCTGAAGGATGCCTTTTCTACCATGGACTCACCAATATGGATGGACAGTAGCACAACTAAGCAATGCAGAGAAATAGAAAGTGTAGTAGGCGGCGCATTGGAGCTATCAAAGTTGACAGGATCTCGTGCCTATGAGAGGTTCACTGGGCCTCAGATCCGGAAGATATACCGAACAGTTCCGCAAGTTTATGATGATACTGAGAGAATATCTTTGGTGAGTTCGTTCATGGCATCAATCCTGGTGGGGAACTATGCAAGTATTGATGAGACTGATGGTGCTGGGATGAACTTGATGGATATAAACCAGAGAACCTGGTCAAAGACTGTTTTAGAGGCAACGGCTCCTGGGCTTGAAGAGAAGCTTGGAAAGTTGGCACCAGCATATGCAGTAGCTGGTCGAA                                                                                                              ]
[+] EMBL BE230744             [                                                                                                                                                                   agcTTAGCAAGGTTGTGG CATTTCARGGAGTGGGCAACAACACGGCAGT TTTATTGGVMGAAGGGTAGTCATGCGSGTGTTGTCTTCCTTGGATCCTACTAAGAGCTTGTTATCCCAGCTGAAGGATGCCTTTTCTACCATGGACTCACCAATATGGATGGACAGTAGCACAACTAAGCAATGCAGAGAAATAGAAAGTGTAGTAGGCGGCGCATTGGAGCTATCAAAGTTGACAGGATCTCGTGCCTATGAGAGGTTCACTGGGCCTCAGATCCGGAAGATATACCGMACAGTTCCGCAAGTTTATGATGATACTGAGAGAATATCTTT                                                                                                                                                                                                                                                                                                          ]




>consensus_13977#1
ATAGTACCTTCAGATATTGTTAACTTTGATTCTGACTTACCGCACTACAAAACAGAAGGT
GGTGTTTACAGAGATCCTGCAGATGATGGCCACATATTTTCACCAACAATAATGTGGGTT
GAAGCCTTTGAATTGCTACTTGAGAAGCTAAAGCCAAAGATCAACTTTAGCAAGGTTGTG
GCCATTTCAGGGAGTGGGCAACAACACGGCAGTGTTTATTGGAAGAAGGGTAGTCATGCG
GTGTTGTCTTCCTTGGATCCTACTAAGAGCTTGTTATCCCAGCTGAAGGATGCCTTTTCT
ACCATGGACTCACCAATATGGATGGACAGTAGCACAACTAAGCAATGCAGAGAAATAGAA
AGTGTAGTAGGCGGCGCATTGGAGCTATCAAAGTTGACAGGATCTCGTGCCTATGAGAGG
TTCACTGGGCCTCAGATCCGGAAGATATACCGAACAGTTCCGCAAGTTTATGATGATACT
GAGAGAATATCTTTGGTGAGTTCGTTCATGGCATCAATCCTGGTGGGGAACTATGCAAGT
ATTGATGAGACTGATGGTGCTGGGATGAACTTGATGGATATAAACCAGAGAACCTGGTCA
AAGACTGTTTTAGAGGCAACGGCTCCTGGGCTTGAAGAGAAGCTTGGAAAGTTGGCACCA
GCATATGCAGTAGCTGGTCGAATTGCTCCTTATTTTGTAGAAAGGTGAGTTTCTTTTACC
ATTCTCCATTGTTCTTGCACTCAGTACAACTGTAAAAGAAAAGAAATTCTGGAAGACTGG
AATTGNAATATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13977#0      CTAATCCATCATCATTTTATGCGCTAATCCACTCCAGATCACGCCGCTAATCGTTATCCA 60
consensus_13977#1      ------------------------------------------------------------
                                                                                   

consensus_13977#0      AACGAATTAACAACAAATCAGTCGCGCGTTTGAAACGAGTCCACTCCACCTCCATCCAGA 120
consensus_13977#1      ------------------------------------------------------------
                                                                                   

consensus_13977#0      TCAGTGTATATAAACCGCCGCGCCGTTTGTTCGTGCTGATTCTCTCTCTCTCTCTAATCA 180
consensus_13977#1      ------------------------------------------------------------
                                                                                   

consensus_13977#0      GTAGTACCCCAGATCAGTTTGTTGCTTTGCTGCTTCTTCCGGTTCCAATCTGAGAGGGGG 240
consensus_13977#1      ------------------------------------------------------------
                                                                                   

consensus_13977#0      GATTCGCGCGGGAGGCGAGGCGAGGCGGCAGCCATGGTGGGGCGGAGCTCCCTCCCGGAG 300
consensus_13977#1      ------------------------------------------------------------
                                                                                   

consensus_13977#0      GGTTCCCTCTTCCTCGGATTCGACAGCTCCACTCAGTCCCTAAAAGCTACCGTGCTGAAC 360
consensus_13977#1      ------------------------------------------------------------
                                                                                   

consensus_13977#0      AACGAATTGATAATAGTAGCTTCAGATATTGTTAACTTTGATTCTGACTTACCGCACTAC 420
consensus_13977#1      ------------ATAGTACCTTCAGATATTGTTAACTTTGATTCTGACTTACCGCACTAC 48
                                   ****** *****************************************

consensus_13977#0      AAAACAGAAGGTGGTGTTTACAGAGATCCTGCAGATGATGGCCACATATTTTCACCAACA 480
consensus_13977#1      AAAACAGAAGGTGGTGTTTACAGAGATCCTGCAGATGATGGCCACATATTTTCACCAACA 108
                       ************************************************************

consensus_13977#0      ATAATGTGGGTTGAAGCCTTTGAATTGCTACTTGAGAAGCTAAAGCCAAAGATCAACTTT 540
consensus_13977#1      ATAATGTGGGTTGAAGCCTTTGAATTGCTACTTGAGAAGCTAAAGCCAAAGATCAACTTT 168
                       ************************************************************

consensus_13977#0      AGCAAGGTTGTGGCCATTTCAGGGAGTGGGCAACAACACGGCAGTGTTTATTGGAAGAAG 600
consensus_13977#1      AGCAAGGTTGTGGCCATTTCAGGGAGTGGGCAACAACACGGCAGTGTTTATTGGAAGAAG 228
                       ************************************************************

consensus_13977#0      GGTAGTCATGCGGTGTTGTCTTCCTTGGATCCTACTAAGAGCTTGTTATCCCAGCTGAAG 660
consensus_13977#1      GGTAGTCATGCGGTGTTGTCTTCCTTGGATCCTACTAAGAGCTTGTTATCCCAGCTGAAG 288
                       ************************************************************

consensus_13977#0      GATGCCTTTTCTACCATGGACTCACCAATATGGATGGACAGTAGCACAACTAAGCAATGC 720
consensus_13977#1      GATGCCTTTTCTACCATGGACTCACCAATATGGATGGACAGTAGCACAACTAAGCAATGC 348
                       ************************************************************

consensus_13977#0      AGAGAAATAGAAAGTGTAGTAGGCGGCGCATTGGAGCTATCAAAGTTGACAGGATCTCGT 780
consensus_13977#1      AGAGAAATAGAAAGTGTAGTAGGCGGCGCATTGGAGCTATCAAAGTTGACAGGATCTCGT 408
                       ************************************************************

consensus_13977#0      GCCTATGAGAGGTTCACTGGGCCTCAGATCCGGAAGATATACCGAACAGTTCCGCAAGTT 840
consensus_13977#1      GCCTATGAGAGGTTCACTGGGCCTCAGATCCGGAAGATATACCGAACAGTTCCGCAAGTT 468
                       ************************************************************

consensus_13977#0      TATGATGATACTGAGAGAATATCTTTGGTGAGTTCGTTCATGGCATCAATCCTGGTGGGG 900
consensus_13977#1      TATGATGATACTGAGAGAATATCTTTGGTGAGTTCGTTCATGGCATCAATCCTGGTGGGG 528
                       ************************************************************

consensus_13977#0      AACTATGCAAGTATTGATGAGACTGATGGTGCTGGGATGAACTTGATGGATATAAACCAG 960
consensus_13977#1      AACTATGCAAGTATTGATGAGACTGATGGTGCTGGGATGAACTTGATGGATATAAACCAG 588
                       ************************************************************

consensus_13977#0      AGAACCTGGTCAAAGACTGTTTTAGAGGCAACGGCTCCTGGGCTTGAAGAGAAGCTTGGA 1020
consensus_13977#1      AGAACCTGGTCAAAGACTGTTTTAGAGGCAACGGCTCCTGGGCTTGAAGAGAAGCTTGGA 648
                       ************************************************************

consensus_13977#0      AAGTTGGCACCAGCATATGCAGTAGCTGGTCGAATTGCTCCTTATTTTGTAGAAAGGCTT 1080
consensus_13977#1      AAGTTGGCACCAGCATATGCAGTAGCTGGTCGAATTGCTCCTTATTTTGTAGAAAGG--T 706
                       *********************************************************  *

consensus_13977#0      CAGTTTGATAAGAATTGCTTAGTTATTCAATGGTCTGGAGACAATCCCAATAGCCTTGCA 1140
consensus_13977#1      GAGTTTCTTTTACCATTCTCCATTGTTCT-TGCACTCAGTACAACTGTAAAAGAAAAGAA 765
                        *****  *      * **   ** ***  **  **    ****    ** **    * *

consensus_13977#0      GGTTTAACTCTGAATACTCCTGGTGACCTTGCAATTAGCCTTGGTACTAGTGATACTGTT 1200
consensus_13977#1      ATTCTG-----GAAGACTGGAATTGNAATATC---------------------------- 792
                         * *      *** ***     **   *  *                            

consensus_13977#0      TTTGGGATAACTGCTGAAGCTAAACCAAGTCTTGAAGGCCATGTTTTCCCTAACCCTGTT 1260
consensus_13977#1      ------------------------------------------------------------
                                                                                   

consensus_13977#0      GAACCTGATGGTTATATGGTGATGCTGTGCTACAAAAATGGTTCATTGACCCGAGAAGAT 1320
consensus_13977#1      ------------------------------------------------------------
                                                                                   

consensus_13977#0      GTGCGGAACAGTTGCGCGGAGAAATCCTGGGATGTTTTCAACAGTTATCTAGAGAAAACT 1380
consensus_13977#1      ------------------------------------------------------------
                                                                                   

consensus_13977#0      CCACCTCTAAATGGCGGAAAATTAGGATTCTACTACAAAGACCATGAAATTCTGCCGCCA 1440
consensus_13977#1      ------------------------------------------------------------
                                                                                   

consensus_13977#0      CTTCCAGTTGGCTTCCATCGATACATTGTTGAAAACCTCAATGATGTCACATCCAACAAT 1500
consensus_13977#1      ------------------------------------------------------------
                                                                                   

consensus_13977#0      CTGGTGGAACGTGAGGTGGAAGAATTTGATCCACCATCTGAGGTTCGCGCCATAATCGAA 1560
consensus_13977#1      ------------------------------------------------------------
                                                                                   

consensus_13977#0      GGCCAGCTGCTGTCAATGCGAGGCCATGCCGAGAGATTCGGCATGCCTAACCCTCCCAAG 1620
consensus_13977#1      ------------------------------------------------------------
                                                                                   

consensus_13977#0      CGGATCATCGCAACCGGTGGCGCATCCTCCAACGAGCGCATCCTCCACTCAATCGCGCAG 1680
consensus_13977#1      ------------------------------------------------------------
                                                                                   

consensus_13977#0      ATCTTTGGCTGTCCTGTCTTTACAGTTCAGAGACCTGATTCTGCCTCGCTTGGCGCGGCA 1740
consensus_13977#1      ------------------------------------------------------------
                                                                                   

consensus_13977#0      CTGAGAGCTGCCCATGGCTGGCTGTGCAATGAGGAAGGGAGCTTCGTCCCCATCTCCTGC 1800
consensus_13977#1      ------------------------------------------------------------
                                                                                   

consensus_13977#0      ATGTACCAGGGTAACCTGGAGAAGACCTCCTTGGGTGCAAAGCTCGCCGTCTCAACCGGA 1860
consensus_13977#1      ------------------------------------------------------------
                                                                                   

consensus_13977#0      GAGGGTGTGGAGGACAAGGAGCTCCTGGAGAAGTACACGGTGCTCATGAGGAAGAGGATG 1920
consensus_13977#1      ------------------------------------------------------------
                                                                                   

consensus_13977#0      GAGATTGAGAGGCGGCTGGTGGAGAAGATTGGGCGCGCGTAGGTAGCAGCATTGCAAAGC 1980
consensus_13977#1      ------------------------------------------------------------
                                                                                   

consensus_13977#0      TGCTGTCCTCGAGTCACAGTTAATTAGAGGGAAATGAAATCATTGGTAGAAACTTATTTA 2040
consensus_13977#1      ------------------------------------------------------------
                                                                                   

consensus_13977#0      TAATATATAGTTAGTAGTGTATCAAGATCATGTTATTATGTTCTTGTGCACGGAATAAAT 2100
consensus_13977#1      ------------------------------------------------------------
                                                                                   

consensus_13977#0      AATAAATGTAAATTTGCAAACTAAACAAGCTCGTCTGTTCTTTCTGTTCATCAATTAGAT 2160
consensus_13977#1      ------------------------------------------------------------
                                                                                   

consensus_13977#0      GAAACTTTAAATCTTCTTTAAAAAAAAAAAAAAAA 2195
consensus_13977#1      -----------------------------------