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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1400#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2321 fasta sequence
[CGTGACAACTTACCATTACCATCGCCAGCACAATGCGCCGCCACCGTCCCTACCTCGACGGCGTCGCCGCCGCCGCCGCAACCTTCCTCCTCGCCGTCCTCCTCCACGCGCCGCTCGCCGCCGGAGAGGACGAGCCTCCGCCATGGGTCCTGTGCGGGCCGTACCCTCCCAGCGGCAACTACTCGAAGAACGGCACGTACCAGGTCAACCTCGACCTCCTCTCCACCACCCTCCCCAAGAACACCTCCTCGTCTCCGGCCATGTACGCCACGGGCACCGTCGGCGACGTCCCCGACAAGGTGTACGGCCTCGCGCTGTGCCGCGGCGACGCCAACGCCTCCGCCTGCGAGCGCTGCGTCGCGGCCGCCCTCCGCGACGCGCCGCGGAGGTGCCCGCTCGTCAAGGACGTGCTCGTCTTCTACGACCTCTGCCAGCTCCGCTACTCCAACCGCGACTTCTTCCTCGACGATGACTACTTCGTCACCACCTACACCCTCCAGCGCTCCCGCCGCGTGGGCGCCGCGGCGGCGGCAGCGTTCGACGCGGCCGTCGCAGTGCTCGTCAACGCCACCGCGGACTACGCGGCGGCGGACTCGTCGAGGCGGTACGGCACGGGGGAGGAGGAGGGCGTCGACGGCGACAGCGACCGCCCCAAGATCTACGCGCTGGTGCAGTGCACGCCGGACAAGACGCCCGAAGTCTGCCGGACCTGCCTCTCGACGGTGATCGGGCAACTGCCCAAAGAATTCAGCGGGAGGACGGGAGGGGGCATGTTCGGGGTGTGGTGCAACTTCCGGTACGAGGTGTTCCCTTTCTTCTCCGGCCGCCCGCTGCTGCAGCTTCCGGCGTTCGTGGAGACGCCGCCGCCGCCGCCTTCGCCATCGGCGACCAGTGGAGAGAAAACGAAAAATAGGATTGGTACAGTTCTAGCGATAGTTATGCCTGCAATAGCTGCAATACTGCTCATGGTTGTAGCATGCTTTTGTTGCTGGAAGAGGATCAAGAAGAGACGACCAGAAGAACAGACGTTTCTGTCCTATTCAGTTAGTTCAGACGATATTCAGAGCATTGATTCGCTTATACTTGATCTACCAACAATACGAGTTGCTACAGATGATTTTGCTGATACTAAAATGATCGGCCAAGGAGGATTTGGTATGGTTTACAAGGGAGTCCTACCTGATGGCCAAGAAATAGCCGTGAAGAGGCTTTGCCAGAGTTCCAGACAAGGAATAGGAGAGCTGAAAAGTGAGCTGATTTTGGTTGCTAAGCTTTACCACAAGAATCTAGTAAGGCTTATTGGTGTTTGCTTGGAGCAGCAAGAGAAAATACTTGTCTATGAATATATGCCAAATGGAAGCCTTGATATCGTTCTTTTCGATACCGACAAGAACAGGGAGCTAGATTGGGGGAAAAGATTCAAGATTATAAATGGGATTGCTCGAGGCTTGCAATACCTTCATGAAGATTCTCAATTGAAGATAGTGCACCGGGACCTCAAAGCAAGCAACATCCTATTGGACTTTGATTACAGCCCTAAGATTTCTGATTTTGGCTTAGCAAAGATATTTGGAGGGGATCAATCAGAAGATGTCACTAATCGAATCGCCGGAACATATGGATACATGGCACCAGAATACGCTATGCGTGGTAATTATTCAATCAAATCGGACGTGTTCAGCTTCGGCGTTTTGGTATTAGAGATTATCACCGGAAGAAGAAACACTGGCTCATATGATAGTGGGCAAGATGTTGATCTCTTAAACCTAGTGTGGGAGCACTGGACAAGGGGAAACGTTGTAGAGCTGATTGATCCATCCATGGGCGACCATCCTCCAATCGAGCAGATGTTGAAGTGCATCCACATCGGGTTGTTGTGTGTTCAGAAAAAACCTGCAAGCAGGCCGACGATTTCGTCAGTAAACATCATGCTTAGCAGCAACACTGTTCGTCTCCCTTCTCTATCCAGGCCGGCGTTCTGCATCCAGGAGGTTAGTGCCAGTGACAGCTCTAATCCGTATTCAGAACGCTATCCAAGACCAAGACATTCCGGGTATTCTGATAATTCAACAGTGGTGTCTTCGAATGATTTGTCAATCACAGAGCTTGTGCCGAGATGAATCCTGAATTTTTAGTTCAGTCGTGTACAATGCTTCTAGATATTACATATGAGGTTGATGCGTGGGGATGCCCTACTGCATCACGTCAGTATATTATTATTTATTGAATCCACCATTGTGGCTGTAATTAGAATTAATAAGATGGTATTTCTTAGAAATTGAAACTGACCGGAGTGGATAATAAAAGTCAGGGGTGATCAC]
[+] EMBL AK111650 [CGTGACAACTTACCATTACCATCGCCAGCACAATGCGCCGCCACCGTCCCTACCTCGACGGCGTCGCCGCCGCCGCCGCAACCTTCCTCCTCGCCGTCCTCCTCCACGCGCCGCTCGCCGCCGGAGAGGACGAGCCTCCGCCATGGGTCCTGTGCGGGCCGTACCCTCCCAGCGGCAACTACTCGAAGAACGGCACGTACCAGGTCAACCTCGACCTCCTCTCCACCACCCTCCCCAAGAACACCTCCTCGTCTCCGGCCATGTACGCCACGGGCACCGTCGGCGACGTCCCCGACAAGGTGTACGGCCTCGCGCTGTGCCGCGGCGACGCCAACGCCTCCGCCTGCGAGCGCTGCGTCGCGGCCGCCCTCCGCGACGCGCCGCGGAGGTGCCCGCTCGTCAAGGACGTGCTCGTCTTCTACGACCTCTGCCAGCTCCGCTACTCCAACCGCGACTTCTTCCTCGACGATGACTACTTCGTCACCACCTACACCCTCCAGCGCTCCCGCCGCGTGGGCGCCGCGGCGGCGGCAGCGTTCGACGCGGCCGTCGCAGTGCTCGTCAACGCCACCGCGGACTACGCGGCGGCGGACTCGTCGAGGCGGTACGGCACGGGGGAGGAGGAGGGCGTCGACGGCGACAGCGACCGCCCCAAGATCTACGCGCTGGTGCAGTGCACGCCGGACAAGACGCCCGAAGTCTGCCGGACCTGCCTCTCGACGGTGATCGGGCAACTGCCCAAAGAATTCAGCGGGAGGACGGGAGGGGGCATGTTCGGGGTGTGGTGCAACTTCCGGTACGAGGTGTTCCCTTTCTTCTCCGGCCGCCCGCTGCTGCAGCTTCCGGCGTTCGTGGAGACGCCGCCGCCGCCGCCTTCGCCATCGGCGACCAGTGGAGAGAAAACGAAAAATAGGATTGGTACAGTTCTAGCGATAGTTATGCCTGCAATAGCTGCAATACTGCTCATGGTTGTAGCATGCTTTTGTTGCTGGAAGAGGATCAAGAAGAGACGACCAGAAGAACAGACGTTTCTGTCCTATTCAGTTAGTTCAGACGATATTCAGAGCATTGATTCGCTTATACTTGATCTACCAACAATACGAGTTGCTACAGATGATTTTGCTGATACTAAAATGATCGGCCAAGGAGGATTTGGTATGGTTTACAAGGGAGTCCTACCTGATGGCCAAGAAATAGCCGTGAAGAGGCTTTGCCAGAGTTCCAGACAAGGAATAGGAGAGCTGAAAAGTGAGCTGATTTTGGTTGCTAAGCTTTACCACAAGAATCTAGTAAGGCTTATTGGTGTTTGCTTGGAGCAGCAAGAGAAAATACTTGTCTATGAATATATGCCAAATGGAAGCCTTGATATCGTTCTTTTCGATACCGACAAGAACAGGGAGCTAGATTGGGGGAAAAGATTCAAGATTATAAATGGGATTGCTCGAGGCTTGCAATACCTTCATGAAGATTCTCAATTGAAGATAGTGCACCGGGACCTCAAAGCAAGCAACATCCTATTGGACTTTGATTACAGCCCTAAGATTTCTGATTTTGGCTTAGCAAAGATATTTGGAGGGGATCAATCAGAAGATGTCACTAATCGAATCGCCGGAACATATGGATACATGGCACCAGAATACGCTATGCGTGGTAATTATTCAATCAAATCGGACGTGTTCAGCTTCGGCGTTTTGGTATTAGAGATTATCACCGGAAGAAGAAACACTGGCTCATATGATAGTGGGCAAGATGTTGATCTCTTAAACCTAGTGTGGGAGCACTGGACAAGGGGAAACGTTGTAGAGCTGATTGATCCATCCATGGGCGACCATCCTCCAATCGAGCAGATGTTGAAGTGCATCCACATCGGGTTGTTGTGTGTTCAGAAAAAACCTGCAAGCAGGCCGACGATTTCGTCAGTAAACATCATGCTTAGCAGCAACACTGTTCGTCTCCCTTCTCTATCCAGGCCGGCGTTCTGCATCCAGGAGGTTAGTGCCAGTGACAGCTCTAATCCGTATTCAGAACGCTATCCAAGACCAAGACATTCCGGGTATTCTGATAATTCAACAGTGGTGTCTTCGAATGATTTGTCAATCACAGAGCTTGTGCCGAGATGAATCCTGAATTTTTAGTTCAGTCGTGTACAATGCTTCTAGATATTACATATGAGGTTGATGCGTGGGGATGCCCTACTGCATCACGTCAGTATATTATTATTTATTGAATCCACCATTGTGGCTGTAATTAGAATTAATAAGATGGTATTTCTTAGAAATTGAAACTGACCGGAGTGGATAATAAAAGTCAGGGGTGATCAC]
consensusID : consensus_1400#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 715 fasta sequence
[TGCTCATGGTTGTAGCATGCTTTTGTTGCTGGAAGAGGATCAAGAAGAGACGACCAGAAGAACAGACGTTTCTGTCCTGTAAGTCTGCTAAAAATTATGATTCAGTTAGTTCAGACGATATTCAGAGCATTGATTCGCTTATACTTGATCTACCAACAATACGAGTTGCTACAGATGATTTTGCTGATACTAAAATGATCGGCCAAGGAGGATTTGGTATGGTTTACAAGGGAGTCCTACCTGATGGCCAAGAAATAGCCGTGAAGAGGCTTTGCCAGAGTTCCAGACAAGGAATAGGAGAGCTGAAAAGTGAGCTGATTTTGGTTGCTAAGCTTTACCACAAGAATCTAGTAAGGCTTATTGGTGTTTGCTTGGAGCAGCAAGAGAAAATACTTGTCTATGAATATATGCCAAATGGAAGCCTTGATATCGTTCTTTTCGATACCGACAAGAACAGGGAGCTAGATTGGGGGAAAAGATTCAAGATTATAAATGGGATTGCTCGAGGCTTGCAATACCTTCATGAAGATTCTCAATTGAAGATAGTGCACCGGGACCTCAAAGCAAGCAACATCCTATTGGACTTTGATTACAGCCCTAAGATTTCTGATTTTGGCTTAGCAAAGATATTTGGAGGGGATCAATCAGAAGATGTCACTAATCGAATCGCCGGAACATATGGATACATGGCACCAGAATACGCTATGCGTGGTAA]
[+] EMBL CB685711 [TGCTCATGGTTGTAGCATGCTTTTGTTGCTGGAAGAGGATCAAGAAGAGACGACCAGAAGAACAGACGTTTCTGTCCTGTAAGTCTGCTAAAAATTATGATTCAGTTAGTTCAGACGATATTCAGAGCATTGATTCGCTTATACTTGATCTACCAACAATACGAGTTGCTACAGATGATTTTGCTGATACTAAAATGATCGGCCAAGGAGGATTTGGTATGGTTTACAAGGGAGTCCTACCTGATGGCCAAGAAATAGCCGTGAAGAGGCTTTGCCAGAGTTCCAGACAAGGAATAGGAGAGCTGAAAAGTGAGCTGATTTTGGTTGCTAAGCTTTACCACAAGAATCTAGTAAGGCTTATTGGTGTTTGCTTGGAGCAGCAAGAGAAAATACTTGTCTATGAATATATGCCAAATGGAAGCCTTGATATCGTTCTTTTCGATACCGACAAGAACAGGGAGCTAGATTGGGGGAAAAGATTCAAGATTATAAATGGGATTGCTCGAGGCTTGCAATACCTTCATGAAGATTCTCAATTGAAGATAGTGCACCGGGACCTCAAAGCAAGCAACATCCTATTGGACTTTGATTACAGCCCTAAGATTTCTGATTTTGGCTTAGCAAAGATATTTGGAGGGGATCAATCAGAAGATGTCACTAATCGAATCGCCGGAACATATGGATACATGGCACCAGAATACGCTATGCGTGGTAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1400#0 CGTGACAACTTACCATTACCATCGCCAGCACAATGCGCCGCCACCGTCCCTACCTCGACG 60
consensus_1400#1 ------------------------------------------------------------
consensus_1400#0 GCGTCGCCGCCGCCGCCGCAACCTTCCTCCTCGCCGTCCTCCTCCACGCGCCGCTCGCCG 120
consensus_1400#1 ------------------------------------------------------------
consensus_1400#0 CCGGAGAGGACGAGCCTCCGCCATGGGTCCTGTGCGGGCCGTACCCTCCCAGCGGCAACT 180
consensus_1400#1 ------------------------------------------------------------
consensus_1400#0 ACTCGAAGAACGGCACGTACCAGGTCAACCTCGACCTCCTCTCCACCACCCTCCCCAAGA 240
consensus_1400#1 ------------------------------------------------------------
consensus_1400#0 ACACCTCCTCGTCTCCGGCCATGTACGCCACGGGCACCGTCGGCGACGTCCCCGACAAGG 300
consensus_1400#1 ------------------------------------------------------------
consensus_1400#0 TGTACGGCCTCGCGCTGTGCCGCGGCGACGCCAACGCCTCCGCCTGCGAGCGCTGCGTCG 360
consensus_1400#1 ------------------------------------------------------------
consensus_1400#0 CGGCCGCCCTCCGCGACGCGCCGCGGAGGTGCCCGCTCGTCAAGGACGTGCTCGTCTTCT 420
consensus_1400#1 ------------------------------------------------------------
consensus_1400#0 ACGACCTCTGCCAGCTCCGCTACTCCAACCGCGACTTCTTCCTCGACGATGACTACTTCG 480
consensus_1400#1 ------------------------------------------------------------
consensus_1400#0 TCACCACCTACACCCTCCAGCGCTCCCGCCGCGTGGGCGCCGCGGCGGCGGCAGCGTTCG 540
consensus_1400#1 ------------------------------------------------------------
consensus_1400#0 ACGCGGCCGTCGCAGTGCTCGTCAACGCCACCGCGGACTACGCGGCGGCGGACTCGTCGA 600
consensus_1400#1 ------------------------------------------------------------
consensus_1400#0 GGCGGTACGGCACGGGGGAGGAGGAGGGCGTCGACGGCGACAGCGACCGCCCCAAGATCT 660
consensus_1400#1 ------------------------------------------------------------
consensus_1400#0 ACGCGCTGGTGCAGTGCACGCCGGACAAGACGCCCGAAGTCTGCCGGACCTGCCTCTCGA 720
consensus_1400#1 ------------------------------------------------------------
consensus_1400#0 CGGTGATCGGGCAACTGCCCAAAGAATTCAGCGGGAGGACGGGAGGGGGCATGTTCGGGG 780
consensus_1400#1 ------------------------------------------------------------
consensus_1400#0 TGTGGTGCAACTTCCGGTACGAGGTGTTCCCTTTCTTCTCCGGCCGCCCGCTGCTGCAGC 840
consensus_1400#1 ------------------------------------------------------------
consensus_1400#0 TTCCGGCGTTCGTGGAGACGCCGCCGCCGCCGCCTTCGCCATCGGCGACCAGTGGAGAGA 900
consensus_1400#1 ------------------------------------------------------------
consensus_1400#0 AAACGAAAAATAGGATTGGTACAGTTCTAGCGATAGTTATGCCTGCAATAGCTGCAATAC 960
consensus_1400#1 ------------------------------------------------------------
consensus_1400#0 TGCTCATGGTTGTAGCATGCTTTTGTTGCTGGAAGAGGATCAAGAAGAGACGACCAGAAG 1020
consensus_1400#1 TGCTCATGGTTGTAGCATGCTTTTGTTGCTGGAAGAGGATCAAGAAGAGACGACCAGAAG 60
************************************************************
consensus_1400#0 AACAGACGTTTCTGTCCT---------------------ATTCAGTTAGTTCAGACGATA 1059
consensus_1400#1 AACAGACGTTTCTGTCCTGTAAGTCTGCTAAAAATTATGATTCAGTTAGTTCAGACGATA 120
****************** *********************
consensus_1400#0 TTCAGAGCATTGATTCGCTTATACTTGATCTACCAACAATACGAGTTGCTACAGATGATT 1119
consensus_1400#1 TTCAGAGCATTGATTCGCTTATACTTGATCTACCAACAATACGAGTTGCTACAGATGATT 180
************************************************************
consensus_1400#0 TTGCTGATACTAAAATGATCGGCCAAGGAGGATTTGGTATGGTTTACAAGGGAGTCCTAC 1179
consensus_1400#1 TTGCTGATACTAAAATGATCGGCCAAGGAGGATTTGGTATGGTTTACAAGGGAGTCCTAC 240
************************************************************
consensus_1400#0 CTGATGGCCAAGAAATAGCCGTGAAGAGGCTTTGCCAGAGTTCCAGACAAGGAATAGGAG 1239
consensus_1400#1 CTGATGGCCAAGAAATAGCCGTGAAGAGGCTTTGCCAGAGTTCCAGACAAGGAATAGGAG 300
************************************************************
consensus_1400#0 AGCTGAAAAGTGAGCTGATTTTGGTTGCTAAGCTTTACCACAAGAATCTAGTAAGGCTTA 1299
consensus_1400#1 AGCTGAAAAGTGAGCTGATTTTGGTTGCTAAGCTTTACCACAAGAATCTAGTAAGGCTTA 360
************************************************************
consensus_1400#0 TTGGTGTTTGCTTGGAGCAGCAAGAGAAAATACTTGTCTATGAATATATGCCAAATGGAA 1359
consensus_1400#1 TTGGTGTTTGCTTGGAGCAGCAAGAGAAAATACTTGTCTATGAATATATGCCAAATGGAA 420
************************************************************
consensus_1400#0 GCCTTGATATCGTTCTTTTCGATACCGACAAGAACAGGGAGCTAGATTGGGGGAAAAGAT 1419
consensus_1400#1 GCCTTGATATCGTTCTTTTCGATACCGACAAGAACAGGGAGCTAGATTGGGGGAAAAGAT 480
************************************************************
consensus_1400#0 TCAAGATTATAAATGGGATTGCTCGAGGCTTGCAATACCTTCATGAAGATTCTCAATTGA 1479
consensus_1400#1 TCAAGATTATAAATGGGATTGCTCGAGGCTTGCAATACCTTCATGAAGATTCTCAATTGA 540
************************************************************
consensus_1400#0 AGATAGTGCACCGGGACCTCAAAGCAAGCAACATCCTATTGGACTTTGATTACAGCCCTA 1539
consensus_1400#1 AGATAGTGCACCGGGACCTCAAAGCAAGCAACATCCTATTGGACTTTGATTACAGCCCTA 600
************************************************************
consensus_1400#0 AGATTTCTGATTTTGGCTTAGCAAAGATATTTGGAGGGGATCAATCAGAAGATGTCACTA 1599
consensus_1400#1 AGATTTCTGATTTTGGCTTAGCAAAGATATTTGGAGGGGATCAATCAGAAGATGTCACTA 660
************************************************************
consensus_1400#0 ATCGAATCGCCGGAACATATGGATACATGGCACCAGAATACGCTATGCGTGGTAATTATT 1659
consensus_1400#1 ATCGAATCGCCGGAACATATGGATACATGGCACCAGAATACGCTATGCGTGGTAA----- 715
*******************************************************
consensus_1400#0 CAATCAAATCGGACGTGTTCAGCTTCGGCGTTTTGGTATTAGAGATTATCACCGGAAGAA 1719
consensus_1400#1 ------------------------------------------------------------
consensus_1400#0 GAAACACTGGCTCATATGATAGTGGGCAAGATGTTGATCTCTTAAACCTAGTGTGGGAGC 1779
consensus_1400#1 ------------------------------------------------------------
consensus_1400#0 ACTGGACAAGGGGAAACGTTGTAGAGCTGATTGATCCATCCATGGGCGACCATCCTCCAA 1839
consensus_1400#1 ------------------------------------------------------------
consensus_1400#0 TCGAGCAGATGTTGAAGTGCATCCACATCGGGTTGTTGTGTGTTCAGAAAAAACCTGCAA 1899
consensus_1400#1 ------------------------------------------------------------
consensus_1400#0 GCAGGCCGACGATTTCGTCAGTAAACATCATGCTTAGCAGCAACACTGTTCGTCTCCCTT 1959
consensus_1400#1 ------------------------------------------------------------
consensus_1400#0 CTCTATCCAGGCCGGCGTTCTGCATCCAGGAGGTTAGTGCCAGTGACAGCTCTAATCCGT 2019
consensus_1400#1 ------------------------------------------------------------
consensus_1400#0 ATTCAGAACGCTATCCAAGACCAAGACATTCCGGGTATTCTGATAATTCAACAGTGGTGT 2079
consensus_1400#1 ------------------------------------------------------------
consensus_1400#0 CTTCGAATGATTTGTCAATCACAGAGCTTGTGCCGAGATGAATCCTGAATTTTTAGTTCA 2139
consensus_1400#1 ------------------------------------------------------------
consensus_1400#0 GTCGTGTACAATGCTTCTAGATATTACATATGAGGTTGATGCGTGGGGATGCCCTACTGC 2199
consensus_1400#1 ------------------------------------------------------------
consensus_1400#0 ATCACGTCAGTATATTATTATTTATTGAATCCACCATTGTGGCTGTAATTAGAATTAATA 2259
consensus_1400#1 ------------------------------------------------------------
consensus_1400#0 AGATGGTATTTCTTAGAAATTGAAACTGACCGGAGTGGATAATAAAAGTCAGGGGTGATC 2319
consensus_1400#1 ------------------------------------------------------------
consensus_1400#0 AC 2321
consensus_1400#1 --
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||