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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14010#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 2008 fasta sequence
[TACCACCACCACGGCGGCGCGTGCTGCTTCGCCGCAAAGCCCACGCAGGTGGCCGCCGAGGTGGATCAGGGAGGGGCGGCCGAGCCGGGTGTCGCTTCCGCCAATGCTGCGGTGGAGGCGA-AGCCGCGTAAGAAGGCGCGATCCCGGCGAGGAAGGAAGGGGAAAAGGTCGTCGTCGTCGGAGACCAGGACGACGGCGGTGCTCGAGGAGGAGGAGGAGGTGGAGGTGAAGGAGAAGAAGACGGAGGAGGATGGAGAGGAGGGGAAGAGGAAGGAGAAGGCGGCGGGGCTTGACCTGGACGAGGTGATGGCGGTGAGCCCCGTGGGGCTAGGGCGGCGGTCGCGGCAGATATTCGACGAGGTGTGGCGCAAGTTCTCGCGGCTGGGGCAGATGTCGAGCGCGTCGTCGACGGCGCTGGCGGAGGAGGAGCAGGCCGTGCTCATCCGCGGCGGACCCATGTGCGAGTTCACCGTCCCCGGCGCGCAGGACACCACCGTCCTCGTCGTCGGCGCCACCAGCCGCATCGGCCGCATCGTCGTCCGCAAGCTCATGCTCCGCGGGTACAATGTCAAGGCTTTAGTTAGAAGGAATGATGCTGAAGTGATAGATATGCTCCCAAGGTCGGTGGATATTGTTGTCGGTGATGTTGGTGATCCTTCAACTGTCAAATCGGCTGTATCAGGTTGCAGCAAGATAATCTATTGCGCAACTGCACGCTCAACTATTACTGGAGACCTAAATAGGGTTGATAATCAAGGAGTAAGGAATGTTAGTAAGGCTTTCCAGGATTACTACAATGAATTGGCTCAGCTTAGGGCTGGTAAAAGCAGCAAGAGCAAACTCCTGATAGCAAAATTTAAATCTCCCAAGTCTCTGAATGGTTGGGAGGTGGACCAGGGATCTTATTTTCCAAACACATTTGCTTCTAGGTTTGATGAAGGTATCGATGCATCATTTGACTTTTCAGAGGCTGGTCAAGCTGTTTTCTCAGGATTTGTTTTCACAAGAGGTGGATATGTTGAGATATCAAAAAGGCTATCTCTTCCTTTGGGATCTACTCTAGACAGGTATGATGGCTTACTTTTTTCGGTGGGAGGAAATGGAAGATCATATGTTGTTATTCTTGAGACTGGTCCGCTGGCTGACACCTCCCAGAGCAAGAAGTACTTTGCTCGGATGACTACAAAAGTAGGATTTTGTAGGGTGAGGGTACCATTTTCAGCTTTTCGGCCAGTAAACCCTCAAGATCCTCCCCTAGACCCTTTTCTTGTGCATACACTAACAATTAGGTTTGAACCCAAAAGACAGAGACCTGGTGATGGATCTCAAAGTGCTACTGACCCCAGAAATTTTGAGCTTATATTGGAATACATCAAAGCTTTGCCTACTGGTCAAGAAACAGACTTCATTCTGGTCTCATGCTCAGGTTCTGGGATTGAACCTAACAGAAGAGAACAAGTCCTCAAAGCAAAAAAGGCTGGAGAGGATGCATTGAGAAGGTCAGGCCTTGGATACACAATAGTACGCCCTGGTCCACTGCA-----GGAAGAACCTGGTGGTCAGCGTGCATTGATCTTTGATCAAGGGAACAGAATCTCGCAGGGTATCAGTTGCGCCGATGTAGCAGATATTTGTGTCAAAGCATTGCATGATTCCACTGCTAGGAACAAAAGTTTTGATGTATGCTACGAGTATGTAGCTAAGCAAGGGAATGAGCTATATGAACTTGTGGCCCATTTACCAGATAAAGCTAACAACTATCTTACACCGGCATTATCTGTTCTAGAGAAGAACACCTGACTGATATGTCTCTGAGACTCAGATATTTGCCA---AAATCAAAATGTGTATACTTTTCAACTTGTAAAGCATATGTTTTTTTCCCCATAGAAGCCGTGTGGAGTTCACATGATATGCCACTTTGGCCCTTTTTGTAAAGATGATCAACAGATTGACTTCAGGAAACAATTTCGATGGCTGTAATGATATATTCTTCCGTTCCTAAAAAAAAAGA]
[+] EMBL AK120907 [TACCACCACCACGGCGGCGCGTGCTGCTTCGCCGCAAAGCCCACGCAGGTGGCCGCCGAGGTGGATCAGGGAGGGGCGGCCGAGCCGGGTGTCGCTTCCGCCAATGCTGCGGTGGAGGCGA AGCCGCGTAAGAAGGCGCGATCCCGGCGAGGAAGGAAGGGGAAAAGGTCGTCGTCGTCGGAGACCAGGACGACGGCGGTGCTCGAGGAGGAGGAGGAGGTGGAGGTGAAGGAGAAGAAGACGGAGGAGGATGGAGAGGAGGGGAAGAGGAAGGAGAAGGCGGCGGGGCTTGACCTGGACGAGGTGATGGCGGTGAGCCCCGTGGGGCTAGGGCGGCGGTCGCGGCAGATATTCGACGAGGTGTGGCGCAAGTTCTCGCGGCTGGGGCAGATGTCGAGCGCGTCGTCGACGGCGCTGGCGGAGGAGGAGCAGGCCGTGCTCATCCGCGGCGGACCCATGTGCGAGTTCACCGTCCCCGGCGCGCAGGACACCACCGTCCTCGTCGTCGGCGCCACCAGCCGCATCGGCCGCATCGTCGTCCGCAAGCTCATGCTCCGCGGGTACAATGTCAAGGCTTTAGTTAGAAGGAATGATGCTGAAGTGATAGATATGCTCCCAAGGTCGGTGGATATTGTTGTCGGTGATGTTGGTGATCCTTCAACTGTCAAGTCGGCTGTATCAGGTTGCAGCAAGATAATCTATTGCGCAACTGCACGCTCAACTATTACTGGAGACCTAAATAGGGTTGATAATCAAGGAGTAAGGAATGTTAGTAAGGCTTTCCAGGATTACTACAATGAATTGGCTCAGCTTAGGGCTGGTAAAAGCAGCAAGAGCAAACTCCTGATAGCAAAATTTAAATCTCCCAAGTCTCTGAATGGTTGGGAGGTGGACCAGGGATCTTATTTTCCAAACACATTTGCTTCTAGGTTTGATGAAGGTATCGATGCATCATTTGACTTTTCAGAGGCTGGTCAAGCTGTTTTCTCAGGATTTGTTTTCACAAGAGGTGGATATGTTGAGATATCAAAAAGGCTATCTCTTCCTTTGGGATCTACTCTAGACAGGTATGATGGCTTACTTTTTTCGGTGGGAGGAAATGGAAGATCATATGTTGTTATTCTTGAGACTGGTCCGCTGGCTGACACCTCCCAGAGCAAGAAGTACTTTGCTCGGATGACTACAAAAGTAGGATTTTGTAGGGTGAGGGTACCATTTTCAGCTTTTCGGCCAGTAAACCCTCAAGATCCTCCCCTAGACCCTTTTCTTGTGCATACACTAACAATTAGGTTTGAACCCAAAAGACAGAGACCTGGTGATGGATCTCAAAGTGCTACTGACCCCAGAAATTTTGAGCTTATATTGGAATACATCAAAGCTTTGCCTACTGGTCAAGAAACAGACTTCATTCTGGTCTCATGCTCAGGTTCTGGGATTGAACCTAACAGAAGAGAACAAGTCCTCAAAGCAAAAAAGGCTGGAGAGGATGCATTGAGAAGGTCAGGCCTTGGATACACAATAGTACGCCCTGGTCCACTGCA GGAAGAACCTGGTGGTCAGCGTGCATTGATCTTTGATCAAGGGAACAGAATCTCGCAGGGTATCAGTTGCGCCGATGTAGCAGATATTTGTGTCAAAGCATTGCATGATTCCACTGCTAGGAACAAAAGTTTTGATGTATGCTACGAGTATGTAGCTAAGCAAGGGAATGAGCTATATGAACTTGTGGCCCATTTACCAGATAAAGCTAACAACTATCTTACACCGGCATTATCTGTTCTAGAGAAGAACACCTGACTGATATGTCTCTGAGACTCAGATATTTGCCA AAATCAAAATGTGTATACTTTTCAACTTGTAAAGCATATGTTTTTTTCCCCATAGAAGCCGTGTGGAGTTCACATGATATGCCACTTTGGCCCTTTTTGTAAAGATGATCAACAGATTGACTTCAGGAAACAATTTCGATGGCTGTAATGATATATTC ]
[+] EMBL CB634019 [ CGCGTGCTGCTTCGCCGCAAAGCCCACGCAGGTGGCCGCCGAGGTGGATCAGGGAGGGGCGGCCGAGCCGGGTGTCGCTTCCGCCAATGCTGCGGTGGAGGCGA AGCCGCGTAAGAAGGCGCGATCCCGGCGAGGAAGGAAGGGGAAAAGGTCGTCGTCGTCGGAGACCAGGACGACGGCGGTGCTCGAGGAGGAGGAGGAGGTGGAGGTGAAGGAGAAGAAGACGGAGGAGGATGGAGAGGAGGGGAAGAGGAAGGAGAAGGCGGCGGGGCTTGACCTGGACGAGGTGATGGCGGTGAGCCCCGTGGGGCTAGGGCGGCGGTCGCGGCAGATATTCGACGAGGTGTGGCGCAAGTTCTCGCGGCTGGGGCAGATGTCGAGCGCGTCGTCGACGGCGCTGGCGGAGGAGGAGCAGGCCGTGCTCATCCGCGGCGGACCCATGTGCGAGTTCACCGTCCCCGGCGCGCAGGACACCACCGTCCTCGTCGTCGGCGCCACCAGCCGCATCGGCCGCATCGTCGTCCGCAAGCTCATGCTCCGCGGGTACAATGTCAAGGCTTTAGTTAGAAGGAATGATGCTGAAGTGATAGATATGCTCCCAAGGTCGGTGGATATTGTTGTCGGTGATGTTGGTGATCCTTCAACTGTCAAATCGGCTGTATCAGGTTGCAGCAAGATAATCTATTGCGCAACTGCACGCTCAACTATTACTGGAGACCTAAATAGGGTTGATAATCAAGGAGTAAGGAATGTTAGTAAGGCTTTCC ]
[+] EMBL CB620010 [ GCTGCTCTTTCGAAAAGCCCACGCAGGTGGCCGCCGAGGTGGATCAGGGAGGGGCGGCCGAGCCGGGTGTCGCTTTCCCCCATGATGCGGTGGAGGCGATTTCCGCGTAAGAAGGCGCGATCCCGGCGAGGAAGGAAGGGGAAAAGGTCGTCGTCGTCGGAGACCAGGACGACGGCGGTGCTCGAGGAGGAGGAGGAGGTGGAGGTGAAGGAGAAGAAGACGGAGGAGGATGGAGAGGAGGGGAAGAGGAAGGAGAAGGCGGCGGGGCTTGACCTGGACGAGGTGATGGCGGTGAGCCTCGTGGGGCTAGGGCGGCGGTCGC GTTTTTATTCGACGAGGTGTGGCGCAAGTTCTCGCGGCTGGGGCAGATGTCGAGCGCGTCGTCGACGGCGCTGGCGGAGGAGGAGCAGGCCGTGCTCATCCGCGGCGGACCCATGTGCGAGTTCACCGTCCCCGGCGCGCAGGACACCACCGTCCTCGTCGTCGGCGCCACCAGCCGCATCGGCCGCATCGTCGTCCGCAAGCTCATGCTCCGCGGGTACAATGTCAAGGCTTTAGTTAGAAGGAATGATGCTGAAGTGATAGATATGCTCCCAAGGTCGGTGGATATTGTTGTCGGTGATGT ]
[+] EMBL AY224493 [ GTGATGGCGGTGAGCCCCGTGGGGCTAGGGCGGCGGTCGCGGCAGATATTCGACGAGGTGTGGCGCAAGTTCTCGCGGCTGGGGCAGATGTCGAGCGCGTCGTCGACGGCGCTGGCGGAGGAGGAGCAGGCCGTGCTCATCCGCGGCGGACCCATGTGCGAGTTCACCGTCCCCGGCGCGCAGGACACCACCGTCCTCGTCGTCGGCGCCACCAGCCGCATCGGCCGCATCGTCGTCCGCAAGCTCATGCTCCGCGGGTACAATGTCAAGGCTTTAGTTAGAAGGAATGATGCTGAAGTGATAGATATGCTCCCAAGGTCGGTGGATATTGTTGTCGGTGATGTTGGTGATCCTTCAACTGTCAAATCGGCTGTATCAGGTTGCAGCAAGATAATCTATTGCGCAACTGCACGCTCAACTATTACTGGAGACCTAAATAGGGTTGATAATCAAGGAGTAAGGAATGTTAGTAAGGCTTTCCAGGATTACTACAATGAATTGGCTCAGCTTAGGGCTGGTAAAAGCAGCAAGAGCAAACTCCTGATAGCAAAATTTAAATCTCCCAAGTCTCTGAATGGTTGGGAGGTGGACCAGGGATCTTATTTTCCAAACACATTTGCTTCTAGGTTTGATGAAGGTATCGATGCATCATTTGACTTTTCAGAGGCTGGTCAAGCTGTTTTCTCAGGATTTGTTTTCACAAGAGGTGGATATGTTGAGATATCAAAAAGGCTATCTCTTCCTTTGGGATCTACTCTAGACAGGTATGATGGCTTACTTTTTTCGGTGGGAGGAAATGGAAGATCATATGTTGTTATTCTTGAGACTGGTCCGCTGGCTGACACCTCCCAGAGCAAGAAGTACTTTGCTCGGATGACTACAAAAGTAGGATTTTGTAGGGTGAGGGTACCATTTTCAGCTTTTCGGCCAGTAAACCCTCAAGATCCTCCCCTAGACCCTTTTCTTGTGCATACACTAACAATTAGGTTTGAACCCAAAAGACAGAGACCTGGTGATGGATCTCAAAGTGCTACTGACCCCAGAAATTTTGAGCTTATATTGGAATACATCAAAGCTTTGCCTACTGGTCAAGAAACAGACTTCATTCTGGTCTCATGCTCAGGTTCTGGGATTGAACCTAACAGAAGAGAACAAGTCCTCAAAGCAAAAAAGGCTGGAGAGGATGCATTGAGAAGGTCAGGCCTTGGATACACAATAGTACGCCCTGGTCCACTGCA GGAAGAACCTGGTGGTCAGCGTGCATTGATCTTTGATCAAGGGAACAGAATCTCGCAGGGTATCAGTTGCGCCGATGTAGCAGATATTTGTGTCAAAGCATTGCATGATTCCACTGCTAGGAACAAAAGTTTTGATGTATGCTACGAGTATGTAGCTAAGCAAGGGAATGAGCTATATGAACTTGTGGCCCATTTACCAGATAAAGCTAACAACTATCTTACACCGGCATTATCTGTTCTAGAGAA ]
[+] EMBL CF589200 [ TGATAGCAAAATTTAAATCTCCCAAGTCTCTGAATGGTTGGGAGGTGGACCAGGGATCTTATTTTCCAAACACATTTGCTTCTAGGTTTGATGAAGGTATCGATGCATCATTTGACTTTTCAGAGGCTGGTCAAGCTGTTTTCTCAGGATTTGTTTTCACAAGAGGTGGATATGTTGAGATATCAAAAAGGCTATCTCTTCCTTTGGGATCTACTCTAGACAGGTATGATGGCTTACTTTTTTCGGTGGGAGGAAATGGAAGATCATATGTTGTTATTCTTGAGACTGGTCCGCTGGCTGACACCTCCCAGAGCAAGAAGTACTTTGCTCGGATGACTACAAAAGTAGGATTTTGTAGGGTGAGGGTACCATTTTCAGCTTTTCGGCCAGTAAACCCTCAAGATCCTCCCCTAGACCCTTTTCTTGTGCATACACTAACAATTAGGTTTGAACCCAAAAGACAGAGACCTGGTGATGGATCTCAAAGTGCTACTGACCCCAGAAATTTTGAGCTTATATTGGAATACATCAAAGCTTTGCCTACTGGTCAAGAAACAGACTTCATTCTGGTCTCATGCTCAGGTTCTGGGATTGAACCTAACAGAAGAGAACAAGTCCTCAAAGCAAAAAAGGCTGGAGAGGATGCATTGAGAAGGTCAGGCCTTGGATACACAATAGTACGCCCTGGTCCACTGCA GGAAGAACCTGGTGGTCAGCGTGCATTGATCTTTGATCAAGGG ACAGAATCTCGCAGGGTATCAGTTGCGCCGATGTAGCAGATATTTGTGTCAAgc ]
[-] EMBL CB634020 [ AAAGTAGGATTTTGTAGGGTGAGGGTACCATTTTCAGCTTTTCGGCCAGTAAACCCTCAAGATCCTCCCCTAGACCCTTTTCTTGTGCATACACTAACAATTAGGTTTGAACCCAAAAGACAGAGACCTGGTGATGGATCTCAAAGTGCTACTGACCCCAGAAATTTTGAGCTTATATTGGAATACATCAAAGCTTTGCCTACTGGTCAAGAAACAGACTTCATTCTGGTCTCATGCTCAGGTTCTGGGATTGAACCTAACAGAAGAGAACAAGTCCTCAAAGCAAAAAAGGCTGGAGAGGATGCATTGAGAAGGTCAGGCCTTGGATACACAATAGTACGCCCTGGTCCACTGCA GGAAGAACCTGGTGGTCAGCGTGCATTGATCTTTGATCAAGGGAACAGAATCTCGCAGGGTATCAGTTGCGCCGATGTAGCAGATATTTGTGTCAAAGCATTGCATGATTCCACTGCTAGGAACAAAAGTTTTGATGTATGCTACGAGTATGTAGCTGAGCAAGGGAATGAGCTATATGAACTTGTGGCCCATTTACCAGATAAAGCTAACAACTATCTTACACCGGCATTATCTGTTCTAGAGAAGAACACCTGACTGATATGTCTCTGAGACTCAGATATTTGCCATATAAATCAAAATGTGTATACTTTTCAACTTGTAAAGCATATGTTGTTTTCCCCATAGAAGCCGTGTGGAGTTCACATGATATGCCACTTTGGCCCTTTTTGTAAAGATGATCAACAGAGGGACTTCAGGAAACAATTTCGATGACTGTA ]
[-] EMBL CB669232 [ TTTTGTAGGGTGAGGGTACCATTTTCAGCTTTTCGGCCAGTAAACCCTCAAGATCCTCCCCTAGACCCTTTTCTTGTGCATACACTAACAATTAGGTTTGAACCCAAAAGACAGAGACCTGGTGATGGATCTCAAAGTGCTACTGACCCCAGAAATTTTGAGCTTATATTGGAATACATCAAAGCTTTGCCTACTGGTCAAGAAACAGACTTCATTCTGGTCTCATGCTCAGGTTCTGGGATTGAACCTAACAGAAGAGAACAAGTCCTCAAAGCAAAAAAGGCTGGAGAGGATGCATTGAGAAGGTCAGGCCTTGGATACACAATAGTACGCCCTGGTCCACTGCAGGTATGGAAGAACCTGGTGGTCAGCGTGCATTGATCTTTGATCAAGGGAACAGAATCTCGCAGGGTATCAGTTGCGCCGATGTAGCAGATATTTGTGTCAAAGCATTGCATGATTCCACTGCTAGGAACAAAAGTTTTGATGTATGCTACGAGTATGTAGCTAAGCAAGGGAATGAGCTATATGAACTTGTGGCCCATTTACCAGATAAAGCTAACAACTATCTTACACCGGCATTATCTGTTCTAGAGAAGAACACCTGACTGATATGTCTCTGAGACTCAGATATTTGCCA AAATCAAAATGTGTATACTTTTCAACTTGTAAAGCATATGTTTTTTTCCCCATAGAAGCCGTGTGGAGTTCACATGATATGCCACTTTGGCCCTTTTTGTAAAGATGATCAACAGATTGACTTCAGGAAACAATTTGGATGGCTGTAATGATATATTCTTCCGTTCCTAAAAAAAAAGA]
[-] EMBL CB626540 [ TAGACCCTTTTTTTGTGCATACACTAACAATTAGGTTTGAACCCAAAAGACAGAGACCTGGTGATGGATCTCAAAGTGCTACTGACCCCAGAAATTTTGAGCTTATATTGGAATACATCAAAGCTTTGCCTACTGGTCAAGAAACAGACTTCATTCTGGTCTCATGCTCAGGTTCTGGGATTGAACCTAACAGAAGAGAACAAGTCCTCAAAGCAAAAAAGGCTGGAGAGGATGCATTGAGAAGGTCAGGCCTTGGATACACAATAGTACGCCCTGGTCCACTGCA GGAAGAACCTGGTGGTCAGCGTGCATTGATCTTTGATCAAGGGAACAGAATCTCGCAGGGTATCAGTTGCGCCGATGTAGCAGATATTTGTGTCAAAGCATTGCATGATTCCACTGCTAGGAACAAAAGTTTTGATGTATGCTACGAGTATGTAGCTGAGCAAGGGAATGAGCTATATGAACTTGTGGCCCATTTACCAGATAAAGGTAACAACTATTTTACACCGGCATTATCTGTTTTAGAGAAGAACACCTGACTGATATGTCTTTGAGACTCAGATATTTGCCATATAAATCAAAATGTGTATACTTTTCAACTTGTAAAGCATATGTTTTTTTCCCCATAGAAGCCGTGTGGAGTTCACATGATATGCCACTTTGGCCCTTTTTGTAAAGATGATCTTTAAAGGGATTTCAGGAAACA ]
[-] EMBL CB620011 [ TTTGAGGTTATATTGGAATACATCAAAGCTTTGCCTACTGGTCAAGAAACAGACTTCATTCTGGTCTCATGCTCAGGTTCTGGGATTGAACCTAACAGAAGAGAACAAGTCCTCAAAGCAAAAAAGGCTGGAGAGGATGCATTGAGAAGGTCAGGCCTTGGATACACAATAGTACGCCCTGGTCCACTGCA GGAAGAACCTGGTGGTCAGCGTGCATTGATCTTTGATCAAGGGAACAGAATTTCGCAGGGTATCAGTTGCGCCGATGTAGCAGATATTTGTGTCAAAGCATTGCATGATTCCACTGCTAGGAACAAAAGTTTTGATGTATGCTACGAGTATGTAGATGAGCAAGGGAATGAGCTATATGAACTTGTGGCCCATTTACCAGATAAAGCTAACAACTATTTTACCCCGGCATTATCTGTTTTAGAGAAGAACACCTGACTGATATGTTTCTGAGACTCAGATATTTGCCATATAAATCAAAATGTGTATACTTTTCAACTTGTAAAGCATATGTTTTTTTCCCCATAGAAGCCGTGTGGAGTTCACATGATATGCCGGGTTGGCCCTTTTTGTAAAGATGATCAACAGATTGACTTCAGGAAACAATTTCGATGACTGTAATGATAAAGTGTTCCGT ]
[-] EMBL CB645922 [ TAACAGAAGAGAACAAGTCCTCAAAGCAAAAAAGGCTGGAGAGGATGCATTGAGAAGGTCAGGCCTTGGATACACAATAGTACGCCCTGGTCCACTGCA GGAAGAACCTGGTGGTCAGCGTGCATTGATCTTTGATCAAGGGAACAGAATCTCGCAGGGTATCAGTTGCGCCGATGTAGCAGATATTTGTGTCAAAGCATTGCATGATTCCACTGTTAGGAACAAAAGTTTTGATGTATGCTACGAGTATGTAGCTAAGCAAGGGAATGAGCTATATGAACTTGTGGCCCATTTACCAGATAAAGCTAACAACTATCTTACACCGGCATTATCTGTTTTAGAGAAGAACACCTGACTGATATGTCTTTGAGACTCAGATATTTGCCA AAATCAAAATGTGTATGTTTTTCAACTTGTAAAGCATATGTTTTTTTCCCCATAGAAGCCGTGTGGAGTTCACATGATATGCCACTTTGGCCCTTTTTGTAAAGATGATCAACAGATTGACTTCAGGAAACAATTTTTAAGGGGGTAATGAT ]
[+] EMBL CA767485 [ TATGAACTTGTGGCCCATTTACC GATAAAGCTAACAACTATCTTACACCGGCATTATCTGTTCTAGAGAAGAACACCTGACTGATATGTCTCTGAGACTCAGGTATTTGCCATATAAATCAAAATGTGTATACTTTTCAACTTGTAAAGCATATGTTTTTTTCCCCATAGAAGCCGTGTGGAGTTCACATGATATGCCACTTTGGCCCTTTTTGTAAAGATGATCAACAGATTGACTTCAGGAAACAATTTCGATGACTGTAATGATATATTCTTCCGTTCCTAc ]
consensusID : consensus_14010#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 845 fasta sequence
[TAATGTGTTAGTAGAAGATATTAATTAGAGATCAGTATTTGCAGACTGCTGTATACATATCATTAAAACCAGTTTCATCATGATCACTCAACCTTTTTTTTCCAGGAAGAACCTGGTGGTCAGCGTGCATTGATCTTTGATCAAGGGAACAGAATCTCGCAGGTGAACCTTCATAAACTATAGGAGTCTGCTTTTCCCATAATATGTTGATAGCATCATACATAAATAACTGATCTTTCTTGTAATATAGGGTATCAGTTGCGCCGATGTAGCAGATATTTGTGTCAAAGCATTGCATGATTCCACTGCTAGGAACAAAAGTTTTGATGTAAGCAACTTTCTTCCACTTTCTTCTGTATAGGATGATCAGTGTTGCAATACTAACTTGTTATTGCCTACTCACTTAGGTATGCTACGAGTATGTAGCTGAGCAAGGGAATGAGCTATATGAACTTGTGAGTATTTCTGAATCCACAACTGATGGAACTCTTAAATCTTAATCTCCTTTCTCCAATTGAGAGTTGCACTCCCAATTCTAATTTATTTTGTACTGAATGTTTCTGCAGGTGGCCCATTTACCAGATAAAGCTAACAACTATCTTACACCGGCATTATCTGTTTTAGAGAAGAACACCTGACTGATATGTCTCTGAGACTCAGATATTTGCCATATAAATCAAAATGTGTATACTTTTCAACTTGTAAAGCATATGTTTTTTTCCCCATAGAAGCCGTGTGGAGTTCACATGATATGCCACTTTGGCCCTTTTTGTAAAGATGATCAACAGATTGACTTCAGGAAACAATTTCGATGACTGTAATGATATAAAAAAAAAAAAAAAAAA]
[-] EMBL CB624591 [TAATGTGTTAGTAGAAGATATTAATTAGAGATCAGTATTTGCAGACTGCTGTATACATATCATTAAAACCAGTTTCATCATGATCACTCAACCTTTTTTTTCCAGGAAGAACCTGGTGGTCAGCGTGCATTGATCTTTGATCAAGGGAACAGAATCTCGCAGGTGAACCTTCATAAACTATAGGAGTCTGCTTTTCCCATAATATGTTGATAGCATCATACATAAATAACTGATCTTTCTTGTAATATAGGGTATCAGTTGCGCCGATGTAGCAGATATTTGTGTCAAAGCATTGCATGATTCCACTGCTAGGAACAAAAGTTTTGATGTAAGCAACTTTCTTCCACTTTCTTCTGTATAGGATGATCAGTGTTGCAATACTAACTTGTTATTGCCTACTCACTTAGGTATGCTACGAGTATGTAGCTGAGCAAGGGAATGAGCTATATGAACTTGTGAGTATTTCTGAATCCACAACTGATGGAACTCTTAAATCTTAATCTCCTTTCTCCAATTGAGAGTTGCACTCCCAATTCTAATTTATTTTGTACTGAATGTTTCTGCAGGTGGCCCATTTACCAGATAAAGCTAACAACTATCTTACACCGGCATTATCTGTTTTAGAGAAGAACACCTGACTGATATGTCTCTGAGACTCAGATATTTGCCATATAAATCAAAATGTGTATACTTTTCAACTTGTAAAGCATATGTTTTTTTCCCCATAGAAGCCGTGTGGAGTTCACATGATATGCCACTTTGGCCCTTTTTGTAAAGATGATCAACAGATTGACTTCAGGAAACAATTTCGATGACTGTA ]
[+] EMBL AU173920 [ CCTGACTGATATGTNTNTGAGACTCAGATATTTGCCA AAATCAAAATGTGTATACTTTTCAACTTGTAAAGCATATGTTTTTTTCCCCATAGAAGCCGTGTGGAGTTCACATGATATGCCNCTTTGGCCCTTTTTGTAAAGATGATCAACAGATTGACTTCAGGAAACAATTTCGATGGCTGTAATGATATAAAAAAAAAAAAAAAAAA]
consensusID : consensus_14010#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 820 fasta sequence
[AGTACTATACAATGAATTTATTTGAAATGTTACCTTAAGGTAATAAATGTAGAGATGATTAAACATGAAATTGGTGGCTCAGCTTTTAATGTATTCTGCAGAGACCTGGTGATGGATCTCAAAGTGCTACTGACCCCAGAAATTTTGAGCTTATATTGGAATACATCAAAGCTTTGCCTGTAAGTTGTTCCTAGTTTGATTGTCTGTGGCATGCTTCGCTACTTTCATTTCCTTCCCTGTTTAATTCTTGTTGTGTCCAACTCTTCTTTTAATTTAAATACCTTCAACATTCCCACTGATTATTTTGGTAGGAAACATGACCTCTTTTTTTTTGTCAGAATTGAAAAGGCAATTCAATTAGGTTATAAAAGCATCTCTTTATTTCTTTTGCAGACTGGTCAAGAATTTTTGTCAGAATTGAGAAGGCAATTCAATTAGGTTATGTTTAAAAAGCATCTCTTTATTTCTTTTGCAGACTGGTCAAGAAACAGACTTCATTCTGGTCTCATGCTCAGGTTCTGGGATTGAACCTAACAGAAGAGAACAAGTCCTCAAAGCAAAAAAGGTTTTAATTTTAATAACCATTTAAAATGCTTACACTTCTCTAATTCAAATGTTCATCAAATTATTAAGGACCTTTGAACATTTCTAGGCTGGAGAGGATGCATTGAGAAGGTCAGGCCTTGGATACACAATAGTACGCCCTGGTCCACTGCAGGTATGGTGTATTGATAGACCTCCTGACAGAAATGCTTCACTTTGAGCTCATAAGTTTACATTCTGCTTTCAGATTATTTATTAAGCTAATAGCACTCCACTT]
[+] EMBL CB624590 [AGTACTATACAATGAATTTATTTGAAATGTTACCTTAAGGTAATAAATGTAGAGATGATTAAACATGAAATTGGTGGCTCAGCTTTTAATGTATTCTGCAGAGACCTGGTGATGGATCTCAAAGTGCTACTGACCCCAGAAATTTTGAGCTTATATTGGAATACATCAAAGCTTTGCCTGTAAGTTGTTCCTAGTTTGATTGTCTGTGGCATGCTTCGCTACTTTCATTTCCTTCCCTGTTTAATTCTTGTTGTGTCCAACTCTTCTTTTAATTTAAATACCTTCAACATTCCCACTGATTATTTTGGTAGGAAACATGACCTCTTTTTTTTTGTCAGAATTGAAAAGGCAATTCAATTAGGTTATAAAAGCATCTCTTTATTTCTTTTGCAGACTGGTCAAGAATTTTTGTCAGAATTGAGAAGGCAATTCAATTAGGTTATGTTTAAAAAGCATCTCTTTATTTCTTTTGCAGACTGGTCAAGAAACAGACTTCATTCTGGTCTCATGCTCAGGTTCTGGGATTGAACCTAACAGAAGAGAACAAGTCCTCAAAGCAAAAAAGGTTTTAATTTTAATAACCATTTAAAATGCTTACACTTCTCTAATTCAAATGTTCATCAAATTATTAAGGACCTTTGAACATTTCTAGGCTGGAGAGGATGCATTGAGAAGGTCAGGCCTTGGATACACAATAGTACGCCCTGGTCCACTGCAGGTATGGTGTATTGATAGACCTCCTGACAGAAATGCTTCACTTTGAGCTCATAAGTTTACATTCTGCTTTCAGATTATTTATTAAGCTAATAGCACTCCACTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14010#0 TACCACCACCACGGCGGCGCGTGCTGCTTCGCCGCAAAGCCCACGCAGGTGGCCGCCGAG 60
consensus_14010#1 ------------------------------------------------------------
consensus_14010#2 ------------------------------------------------------------
consensus_14010#0 GTGGATCAGGGAGGGGCGGCCGAGCCGGGTGTCGCTTCCGCCAATGCTGCGGTGGAGGCG 120
consensus_14010#1 ------------------------------------------------------------
consensus_14010#2 ------------------------------------------------------------
consensus_14010#0 AAGCCGCGTAAGAAGGCGCGATCCCGGCGAGGAAGGAAGGGGAAAAGGTCGTCGTCGTCG 180
consensus_14010#1 ------------------------------------------------------------
consensus_14010#2 ------------------------------------------------------------
consensus_14010#0 GAGACCAGGACGACGGCGGTGCTCGAGGAGGAGGAGGAGGTGGAGGTGAAGGAGAAGAAG 240
consensus_14010#1 ------------------------------------------------------------
consensus_14010#2 ------------------------------------------------------------
consensus_14010#0 ACGGAGGAGGATGGAGAGGAGGGGAAGAGGAAGGAGAAGGCGGCGGGGCTTGACCTGGAC 300
consensus_14010#1 ------------------------------------------------------------
consensus_14010#2 ------------------------------------------------------------
consensus_14010#0 GAGGTGATGGCGGTGAGCCCCGTGGGGCTAGGGCGGCGGTCGCGGCAGATATTCGACGAG 360
consensus_14010#1 ------------------------------------------------------------
consensus_14010#2 ------------------------------------------------------------
consensus_14010#0 GTGTGGCGCAAGTTCTCGCGGCTGGGGCAGATGTCGAGCGCGTCGTCGACGGCGCTGGCG 420
consensus_14010#1 ------------------------------------------------------------
consensus_14010#2 ------------------------------------------------------------
consensus_14010#0 GAGGAGGAGCAGGCCGTGCTCATCCGCGGCGGACCCATGTGCGAGTTCACCGTCCCCGGC 480
consensus_14010#1 ------------------------------------------------------------
consensus_14010#2 ------------------------------------------------------------
consensus_14010#0 GCGCAGGACACCACCGTCCTCGTCGTCGGCGCCACCAGCCGCATCGGCCGCATCGTCGTC 540
consensus_14010#1 ------------------------------------------------------------
consensus_14010#2 ------------------------------------------------------------
consensus_14010#0 CGCAAGCTCATGCTCCGCGGGTACAATGTCAAGGCTTTAGTTAGAAGGAATGATGCTGAA 600
consensus_14010#1 ------------------------------------------------------------
consensus_14010#2 ------------------------------------------------------------
consensus_14010#0 GTGATAGATATGCTCCCAAGGTCGGTGGATATTGTTGTCGGTGATGTTGGTGATCCTTCA 660
consensus_14010#1 ------------------------------------------------------------
consensus_14010#2 ------------------------------------------------------------
consensus_14010#0 ACTGTCAAATCGGCTGTATCAGGTTGCAGCAAGATAATCTATTGCGCAACTGCACGCTCA 720
consensus_14010#1 ------------------------------------------------------------
consensus_14010#2 ------------------------------------------------------------
consensus_14010#0 ACTATTACTGGAGACCTAAATAGGGTTGATAATCAAGGAGTAAGGAATGTTAGTAAGGCT 780
consensus_14010#1 ------------------------------------------------------------
consensus_14010#2 ------------------------------------------------------------
consensus_14010#0 TTCCAGGATTACTACAATGAATTGGCTCAGCTTAGGGCTGGTAAAAGCAGCAAGAGCAAA 840
consensus_14010#1 ------------------------------------------------------------
consensus_14010#2 ------------------------------------------------------------
consensus_14010#0 CTCCTGATAGCAAAATTTAAATCTCCCAAGTCTCTGAATGGTTGGGAGGTGGACCAGGGA 900
consensus_14010#1 ------------------------------------------------------------
consensus_14010#2 ------------------------------------------------------------
consensus_14010#0 TCTTATTTTCCAAACACATTTGCTTCTAGGTTTGATGAAGGTATCGATGCATCATTTGAC 960
consensus_14010#1 ------------------------------------------------------------
consensus_14010#2 ------------------------------------------------------------
consensus_14010#0 TTTTCAGAGGCTGGTCAAGCTGTTTTCTCAGGATTTGTTTTCACAAGAGGTGGATATGTT 1020
consensus_14010#1 ------------------------------------------------------------
consensus_14010#2 ------------------------------------------------------------
consensus_14010#0 GAGATATCAAAAAGGCTATCTCTTCCTTTGGGATCTACTCTAGACAGGTATGATGGCTTA 1080
consensus_14010#1 ------------------------------------------------------------
consensus_14010#2 ------------------------------------------------------------
consensus_14010#0 CTTTTTTCGGTGGGAGGAAATGGAAGATCATATGTTGTTATTCTTGAGACTGGTCCGCTG 1140
consensus_14010#1 --------------------------------------------------TAATGTGTTA 10
consensus_14010#2 ------------------------------------------------------------
consensus_14010#0 GCTGACACCTCCCAGAGCAAGAAGTACTTTGCTCGGATGACTACAAAAGTAGGATTTTGT 1200
consensus_14010#1 GTAGAAGATATT--AATTAGAGATCAGTATTTGCAGACTGCTGTATACATATCATT---- 64
consensus_14010#2 ------------------------------------------------------------
consensus_14010#0 AGGGTGAGGGTACCATTT--TCAGCTTTTCGGCCAGTAAACCCTCAAGATCCTCCCCTAG 1258
consensus_14010#1 --------AAAACCAGTT--TCATCAT---GATCACTCAACCTTTTT--TTTCCAGGAAG 109
consensus_14010#2 --------AGTACTATACAATGAATTTATTTGAAATGTTACCTTAAGGTAATAAATGTAG 52
** * * * * * *** * **
consensus_14010#0 ACCCTTTTCT-TGTGCATACACTAACAATTAGGTTTGAACCCAAAAGACAGAGACCTGGT 1317
consensus_14010#1 AACCTGGTGG-TCAGCGTGCATTGAT-------CTTTGATCAAGGGAACAGAATCTCGCA 161
consensus_14010#2 AGATGATTAAACATGAAATTGGTGGC--TCAGCTTTTAATGTATTCTGCAGAGACCTGGT 110
* * * * ** * * **** * *
consensus_14010#0 GATGGATCTCAAAGTGCTACTGACCCCAGAAATTTTGAGCTTATATTGGAATACATCAAA 1377
consensus_14010#1 GGTGAACCTTCATAAACTAT-------AGGAGTCT---GCTTTTCCCATAATATGTTGAT 211
consensus_14010#2 GATGGATCTCAAAGTGCTACTGACCCCAGAAATTTTGAGCTTATATTGGAATACATCAAA 170
* ** * ** * *** ** * * * **** * **** * *
consensus_14010#0 GCTTTGCCTACTGGTCAAGAAACAGACTTCATTCTG-GTCTCATGCTCAGGTTCTGGGAT 1436
consensus_14010#1 AGCAT-CATAC--ATAAATAACTGATCTTTCTTGTA-ATATAGGGTATCAGTTGCGCCGA 267
consensus_14010#2 GCTTTGCCTGTAAGTT--GTTCCTAGTTTGATTGTCTGTGGCATGCTTCGCTACTTTCAT 228
* * * * ** ** * * * *
consensus_14010#0 TGAACCTAACAGAAGAGAACAAGTCCTCAAAGCAAAAAAGGCTGGAGA-GGATGCATTGA 1495
consensus_14010#1 TGTAGCAGATATTTGTGTCAAAGCATTGCATGATTCCACTGCTAGGAACAAAAGTTTTGA 327
consensus_14010#2 T-TCCTTCCCTGTTTAATTCTTGTTGTGTCCA-ACTCTTCTTTTAATTTAAATACCTTCA 286
* * * * * ** *
consensus_14010#0 GAAGGTCAGGC--CTTGGATACACAATAGTACGCCCTGGTC--CACTGCAGGAAGAACCT 1551
consensus_14010#1 TGTAAGCAACTTTCTTCCACTTTCTTCTGTATAGGATGATCAGTGTTGCAATACTAACTT 387
consensus_14010#2 ACATTCCCACTGATTATTTTGGTAGGAAACATGACCTCTTT---TTTTTTGTCAGAATTG 343
* * * * * * **
consensus_14010#0 GGTGGTCAGCGTGCATTGATCTTTGATCAAGGGAACAGAATCTCGCA-GGGTATCAGTTG 1610
consensus_14010#1 GTTATTGCCTACTCACTTAGGTATG-CTACGAGTATGTAGCTGAGCAAGGGAATGAGCTA 446
consensus_14010#2 AAAAGGCA--ATTCAATTAGGTTATAAAAGCATCTCTTTATTTCTTTTGCAGACTGGTCA 401
** * * * * * * *
consensus_14010#0 CGCCGATGTAGCAG-ATATTTGTGTCAAAGCATTGCATGATTCC--ACTGCTAGGAACAA 1667
consensus_14010#1 TATGAACTTGTGAGTATTTCTGAATCCACAACTGATGGAACTCTTAAATCTTAATCTCCT 506
consensus_14010#2 AGAATTTTTGTCAG---AATTGAG--AAGGCAATTCA--ATTAGGTTATGTTTAAAAAGC 454
* ** ** * * * * *
consensus_14010#0 AAGTTTTGATGTATGCTACGAGTATGTAGCTAAGCAAGG--GAATGAGCTAT-ATGAACT 1724
consensus_14010#1 TTCTCCAATTGAGAGTTGCACTCCCAATTCTAATTTATTTTGTACTGAATGT-TTCTGCA 565
consensus_14010#2 ATCTCTTTATTTCTTTTGCAGACTGGTCAAGAAACAGACTTCATTCTGGTCTCATGCTCA 514
* * * * ** * * * *
consensus_14010#0 TGTGGCCCATTT--ACCAGATA-AAGCTAACAACTATCTTACACCGGCATTATCT-GTTC 1780
consensus_14010#1 GGTGGCCCATTT--ACCAGATA-AAGCTAACAACTATCTTACACCGGCATTATCT-GTTT 621
consensus_14010#2 GGTTCTGGGATTGAACCTAACAGAAGAGAACAAGTCCTCAAAGCAAAAAAGGTTTTAATT 574
** ** *** * * *** ***** * * * * * * *
consensus_14010#0 TAGAGAAGAACACCTGACTGATATGTCTCTGAGACTCAGATATTTGCCA---AAATCAAA 1837
consensus_14010#1 TAGAGAAGAACACCTGACTGATATGTCTCTGAGACTCAGATATTTGCCATATAAATCAAA 681
consensus_14010#2 TTAATAACCATTTAAAATGCTTACACTTCTCTAATTCAAATGTTCATCAAATTATTAAGG 634
* * ** * * ** *** * *** ** ** ** * * *
consensus_14010#0 ATGTGTATACTTTTC-AACTTGTAAAGCATATGTTTTTTTCCCCATAGAAGCCGTGTGGA 1896
consensus_14010#1 ATGTGTATACTTTTC-AACTTGTAAAGCATATGTTTTTTTCCCCATAGAAGCCGTGTGGA 740
consensus_14010#2 ACCTTTGAACATTTCTAGGCTGGAGAGGATGCATT---------GAGAAGGTCAGGCCTT 685
* * * ** **** * ** * ** ** ** * * * *
consensus_14010#0 GTTCACATGATATGCCACTTTGGCCCTTTTTGTAAAGATGATCAACAGATTGACTTCAGG 1956
consensus_14010#1 GTTCACATGATATGCCACTTTGGCCCTTTTTGTAAAGATGATCAACAGATTGACTTCAGG 800
consensus_14010#2 GGATACACAATAGTACGCCCTGGTCCAC--TGCAGGTATGGTGTATTGATAGACCTCCTG 743
* *** *** * * *** ** ** * *** * * *** *** ** *
consensus_14010#0 AAACAATTTCGATGGCTGTAATGATATATTCTTCCGTTCCTAAAAAAAAAGA-------- 2008
consensus_14010#1 AAACAATTTCGATGACTGTAATGATATA-------AAAAAAAAAAAAAAAAA-------- 845
consensus_14010#2 ACAGAAATGCT-TCACTTTGAGCTCATAAGTTTACATTCTGCTTTCAGATTATTTATTAA 802
* * ** * * * ** * * *** * * *
consensus_14010#0 ------------------
consensus_14010#1 ------------------
consensus_14010#2 GCTAATAGCACTCCACTT 820
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||