cluster # 14020

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Oryza sativa
cluster # 14020 cluster # 14020 Sequences # 14 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_14020#0 length = 1844 sequences # 12

consensus_14020#1 length = 664 sequences # 2

consensusID : consensus_14020#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 1844
fasta sequence

                              [CGGCGGCTGTCAACGGGGACCGGCTCAGGGCGGAGCAGATCCGGAAGCAGGCGAAGGACGCGGCGGCCTCCGCCGCCGCGCTGGCCGCGGCGTCGCGCAGGCTCCACCTCGACCGCGCGCGCCACCTCCGGCTGCTCTCCTCCCTCCACCGCAACCTCACCGCCACGCTCCGTGACCTCAGCGCCGCCGCGTCGGCGTCGGCGTCCGCGTCCGCGTCCGAGGCCGGCTACGCGTCGGCGGGGGACGAGGTGCGGCGGCTCGACCTTCAGGCCAAGGACCTGATCCGCGCCGCGCGCGCCGCCATCGCGGACGCCAAGCCGCTGTTCGACCCGCAGCTCAAGATCCAGCGGCTCAAGGACGCCATCTTCGCGCAGAACGAGTTGCTCGCGCGCGCCAAGAAGCGCGGCGCCTTCGCCTCCCTCATCGCCGCCAAGTCCATCCCCAAGCCGCTCCACTGCCTCGCCGTCCGCCTCACCGCCGAGCGGATCGCACGGCCCGAGAATTACGCCGACCCGGTGCCGCCGCCGCACGCGCTCGAGGACCCCGCCATGTTCCACTACGCCATCTTCTCCGACAACGTCCTCGCCGCCTCCGTCGTCGTGCGCTCCGCCGTCGCCAACTCGCTCGACCCCTCCAAGCACGTCTTCCACGTCGTCACCGACCGAATGAACCTTGGCGCCATGCAGGTGATAATTCGCCTAATGGACTTAAAAGGCGCGCACTATGAGGTCAAAGCATTTGAAGACTACAAGTTTCTTAACTCCTCATATGTTCCTGTGCTTCGGCAACTGGAGTCAGCAAACCTCCAGAAGTTCTATTTTGAGAACAAGCTTGAGAATGCTACAAAAGATGCTAGTAATATGAAGTTTAGGAACCCCAAGTATCTCTCGATGCTCAATCACTTGCGGTTCTATTTGCCGGAGATGTACCCAAAGCTGCACCGGATACTTTTCTTGGATGATGATGTTGTGGTACAGCGGGATCTTACAGGATTGT-GGAAGATTGACAT-GGATGGGAAGGTGAATGGAGCAGTGGAAACATGCTTTGGAT-CGTTTCATCGGTATTGGCAGTATATGAACTTCTCGCACCCACTTATCAAAGAGAAGTTTAATCCTAATGCATGTGGATGGGCATATGGCATGAACTTCTTTGATCTTGATTCTTGGAGGAGAGAAAAGAGTACTGAGCAATATCATTACTGGCAGAGTCAGAATGAGAACAGGACATTATGGAAGCTAGGAACGTTGCCTCCTGGTTTGATCACATTCTACTCCACCACAAAGCCTCTGGAAAAATCTTGGCATGTTCTTGGACTCGGGTACAATCCAAGCATAAGCATGGAGGAGATTAGAAACGCTGCTGTTGTGCATTTCAACGGGAACATGAAGCCCTGGCTGGATATCGGTATGAACCAGTTCAGGCACCTATGGACAAAATACGTGGATTACGACGACTCATTCATTCGCCAATGCAATTTTGCACCACCGTAGAAGGAAAAGCCTTTGCCATTGTTCTACAGATATCAAGGAAGATTGGTAACTAGAGCTAGAGCCAC-TGTAACAGTTAACACATGTACTATCGCATG-TTTTGT-GGAAATCTCAGGAGCCTGCGAATTAGAACTGC-GGAGGACAAGAAATTCTTTCTAGATCTTGTTGTATGTCATCGATTAAGTTATGGTGAAAATGCTGTTCAAAACATGAACATTATTTTCATCCCGTTTGTAATAATCTTATGCGTGTCAGCGTGTGTATGCCAAAGTCATGTGCTATGTTCATAATATGAAGACAATCTTACTAGGACAAATTATCAGAAGATCAATGAACTCCTGTAGAGAAATATTGNGC]

[+] EMBL AK069572             [CGGCGGCTGTCAACGGGGACCGGCTCAGGGCGGAGCAGATCCGGAAGCAGGCGAAGGACGCGGCGGCCTCCGCCGCCGCGCTGGCCGCGGCGTCGAGCAGGCTCCACCTCGACCGCGCGCGCCACCTCCGGCTGCTCTCCTCCCTCCACCGCAACCTCACCGCCACGCTCCGTGACCTCAGCGCCGCCGCGTCGGCGTCGGCGTCCGCGTCCGCGTCCGAGGCCGGCTACGCGTCGGCGGGGGACGAGGTGCGGCGGCTCGACCTTCAGGCCAAGGACCTGATCCGCGCCGCGCGCGCCGCCATCGCGGACGCCAAGCCGCTGTTCGACCCGCAGCTCAAGATCCAGCGGCTCAAGGACGCCATCTTCGCGCAGAACGAGTTGCTCGCGCGCGCCAAGAAGCGCGGCGCCTTCGCCTCCCTCATCGCCGCCAAGTCCATCCCCAAGCCGCTCCACTGCCTCGCCGTCCGCCTCACCGCCGAGCGGATCGCACGGCCCGAGAATTACGCCGACCCGGTGCCGCCGCCGCACGCGCTCGAGGACCCCGCCATGTTCCACTACGCCATCTTCTCCGACAACGTCCTCGCCGCCTCCGTCGTCGTGCGCTCCGCCGTCGCGAACTCGCTCGACCCCTCCAAGCACGTCTTCCACGTCGTCACCGACCGAATGAACCTTGGCGCCATGCAGGTGATAATTCGCCTAATGGACTTAAAAGGCGCGCACTATGAGGTCAAAGCATTTGAAGACTACAAGTTTCTTAACTCCTCATATGTTCCTGTGCTTCGGCAACTGGAGTCAGCAAACCTCCAGAAGTTCTATTTTGAGAACAAGCTTGAGAATGCTACAAAAGATGCTAGTAATATGAAGTTTAGGAACCCCAAGTATCTCTCGATGCTCAATCACTTGCGGTTCTATTTGCCGGAGATGTACCCAAAGCTGCACCGGATACTTTTCTTGGATGATGATGTTGTGGTACAGCGGGATCTTACAGGATTGT GGAAGATTGACAT GGATGGGAAGGTGAATGGAGCAGTGGAAACATGCTTTGGAT CGTTTCATCGGTATTGGCAGTATATGAACTTCTCGCACCCACTTATCAAAGAGAAGTTTAATCCTAATGCATGTGGATGGGCATATGGCATGAACTTCTTTGATCTTGATTCTTGGAGGAGAGAAAAGAGTACTGAGCAATATCATTACTGGCAGAGTCAGAATGAGAACAGGACATTATGGAAGCTAGGAACGTTGCCTCCTGGTTTGATCACATTCTACTCCACCACAAAGCCTCTGGAAAAATCTTGGCATGTTCTTGGACTCGGGTACAATCCAAGCATAAGCATGGAGGAGATTAGAAACGCTGCTGTTGTGCATTTCAACGGGAACATGAAGCCCTGGCTGGATATCGGTATGAACCAGTTCAGGCACCTATGGACAAAATACGTGGATTACGACGACTCATTCATTCGCCAATGCAATTTTGCACCACCGTAGAAGGAAAAGCCTTTGCCATTGTTCTACAGATATCAAGGAAGATTGGTAACTAGAGCTAGAGCCAC TGTAACAGTTAACACATGTACTATCGCATG TTTTGT GGAAATCTCAGGAGCCTGCGAATTAGAACTGC GGAGGACAAGAAATTCTTTCTAGATCTTGTTGTATGTCATCGATTAAGTTATGGTGAAAATGCTGTTCAAAACATGAACATTATTTTCATCCCGTTTGTAATAATCTTATGCGTGTCAGCGTGTGTATGCCAAAGTCATGTGCTATGTTCATAATATGAAGACAATCTTACTAGGACAAATTATCAGAAGATCAATGAACTCCTGTAGAGA          ]
[+] EMBL AK102664             [CGGCGGCTGTCAACGGGGACCGGCTCAGGGCGGAGCAGATCCGGAAGCAGGCGAAGGACGCGGCGGCCTCCGCCGCCGCGCTGGCCGCGGCGTCGCGCAGGCTCCACCTCGACCGCGCGCGCCACCTCCGGCTGCTCTCCTCCCTCCACCGCAACCTCACCGCCACGCTCCGTGACCTCAGCGCCGCCGCGTCGGCGTCGGCGTCCGCGTCCGCGTCCGAGGCCGGCTACGCGTCGGCGGGGGACGAGGTGCGGCGGCTCGACCTTCAGGCCAAGGACCTGATCCGCGCCGCGCGCGCCGCCATCGCGGACGCCAAGCCGCTGTTCGACCCGCAGCTCAAGATCCAGCGGCTCAAGGACGCCATCTTCGCGCAGAACGAGTTGCTCGCGCGCGCCAAGAAGCGCGGCGCCTTCGCCTCCCTCATCGCCGCCAAGTCCATCCCCAAGCCGCTCCACTGCCTCGCCGTCCGCCTCACCGCCGAGCGGATCGCACGGCCCGAGAATTACGCCGACCCGGTGCCGCCGCCGCACGCGCTCGAGGACCCCGCCATGTTCCACTACGCCATCTTCTCCGACAACGTCCTCGCCGCCTCCGTCGTCGTGCGCTCCGCCGTCGCCAACTCGCTCGACCCCTCCAAGCACGTCTTCCACGTCGTCACCGACCGAATGAACCTTGGCGCCATGCAGGTGATAATTCGCCTAATGGACTTAAAAGGCGCGCACTATGAGGTCAAAGCATTTGAAGACTACAAGTTTCTTGACTCCTCATATGTTCCTGTGCTTCGGCAACTGGAGTCAGCAAACCTCCAGAAGTTCTATTTTGAGAACAAGCTTGAGAATGCTACAAAAGATGCTAGTAATATGAAGTTTAGGAACCCCAAGTATCTCTCGATGCTCAATCACTTGCGGTTCTATTTGCCGGAGATGTACCCAAAGCTGCACCGGATACTTTTCTTGGATGATGATGTTGTGGTACAGCGGGATCTTACAGGATTGT GGAAGATTGACAT GGATGGGAAGGTGAATGGAGCAGTGGAAACATGCTTTGGAT CGTTTCATCGGTATTGGCAGTATATGAACTTCTCGCACCCACTTATCAAAGAGAAGTTTAATCCTAATGCATGTGGATGGGCATATGGCATGAACTTCTTTGATCTTGATTCTTGGAGGAGAGAAAAGAGTACTGAGCAATATCATTACTGGCAGAGTCAGAATGAGAACAGGACATTATGGAAGCTAGGAACGTTGCCTCCTGGTTTGATCACATTCTACTCCACCACAAAGCCTCTGGAAAAATCTTGGCATGTTCTTGGACTCGGGTACAATCCAAGCATAAGCATGGAGGAGATTAGAAACGCTGCTGTTGTGCATTTCAACGGGAACATGAAGCCCTGGCTGGATATCGGTATGAACCAGTTCAGGCACCTATGGACAAAATACGTGGATTACGACGACTCATTCATTCGCCAATGCAATTTTGCACCACCGTAGAAGGAAAAGCCTTTGCCATTGTTCTACAGATATCAAGGAAGATTGGTAACTGGAGCTAGAGCCAC TGTAACAGTTAACACATGTACTATCGCATG TTTTGT GGAAATCTCAGGAGCCTGCGAATTAGAACTGC GGAGGACAAGAAATTCTTTCTAGATCTTGTTGTATGTCATCGATTAAGTTATGGTGAAAATGCTGTTCAAAACATGAACATTATTTTCATCCCGTTTGTAATAATCTTATGCGTGTCAGCGTGTGTATGCCAAAGTCATGTGCTATGTTCATAATATGAAGACAATCTTACTAGGACAAATTATCAGAAGATCAATGAACTCCTGTAGA            ]
[+] EMBL CB618406             [  GCGGCCGTCAACGGGGACCGGCTCAGGGCGGAGCAGATCCGGAAGCAGGCGAAGGACGCGGCGGCCTCCGCCGCCGCGCTGGCCGCGGCGTCGCGCAGGCTCCACCTCGACCGCGCGCGCCACCTCCGGCTGCTCTCCTCCCTCCACCGCAACCTCACCGCCACGCTCCGTGACCTCAGCGCCGCCGCGTCGGCGTCGGCGTCCGCGTCCGCGTCCGAGGCCGGCTACGCGTCGGCGGGGGACGAGGTGCGGCGGCTCGACCTGCAGGCCAAGGACCTGATCCGCGCCGCGCGCGCCGCCATCGCGGACGCCAAGCCGCTGTTCGACCCGCAGCTCAAGATCCAGCGGCTCAAGGACGCCATCTTCGCGCAGAACGAGTTGCTCGCGCGCGCCAAGAAGCGCGGCGCCTTCGCCTCCCTCATCGCCGCCAAGTCCATCCCCAAGCCGCTCCACTGCCTCGCCGTCCGCCTCACCGCCGAGCGGATCGCACGGCCCGAGAATTACGCCGACCCGGTGCCGCCGCCGCACGCGCTCGAGGACCCCGCCATGTTCCACTACGCCATCTTCTCCGACAACGTCCTCGCCGCCTCCGTCGTCGTGCGCTCCGCCGTCGCCAACTCGCTCGACCCCTCCAAGCACGTCTTCCACGTCGTCACCGACCGAATGAACCTTGGCGCCATGCAGGTGATAATTCGCCTAATGGACTTAAAAGGCGCGCACTATGAGGTCAAAGCATTTGAAGACTACAAGTTTCTTAACTCCTCATATGTTCCTGTGCct                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CB643030             [                                                                                                                                                                                                                                                                   CGACCTTCTGGCCAAGGACCTGATCCGCGCCGCGCGCGCCGCCATCGCGGACGCCAAGCCGCTGTTCGACCCGCAGCTCAAGATCCAGCGGCTCAAGGACGCCATCTTCGCGCAGAACGAGTTGCTCGCGCGCGCCAAGAAGCGCGGCGCCTTCGCCTCCCTCATCGCCGCCAAGTCCATCCCCAAGCCGCTCCACTGCCTCGCCGTCCGCCTCACCGCCGAGCGGATCGCACGGCCCGAGAATTACGCCGACCCGGTGCCGCCGCCGCACGCGCTCGAGGACCCCGCCATGTTCCACTACGCCATCTTCTCCGACAACGTCCTCGCCGCCTCCGTCGTCGTGCGCTCCGCCGTCGCCAACTCGCTCGACCCCTCCAAGCACGTCTTCCACGTCGTCACCGACCGAATGAACCTTGGCGCCATGCAGGTGATAATTCGCCTAATGGACTTAAAAGGCGCGCACTATGAGGTCAAAGCATTTGAAGACTACAAGTTTCTTAACTCCTCATATGTTCCTGTGCTTCGGCAACTGGAGTCAGCAAACCTCCAGAAGTTCTATTTTGAGAACAAGCTTGAGAATGCTACAAAAGATGCTAGTAATATGAAGTTTAGGAACCCCAAGTATCTCTCGATGCTCAATCACTTGCGGTTCTATTTGCCGGAGATGTACCCAAAGCTGCACCGGATACTTTTCTTGGATGATGATGTTGTGGTACAGCGGGATCTTACAGGATTGT GGAAGATTGACAT GGATGGGAAGGTGAATGGAGCAGTGGAAACATGCTTTGGAT CGTTTCATCGGTATTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL C28735               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CTCGACCCCTCCAAGCACGTCTTCCACGTCGTCACCGACCGAATGAACCTTGGCGCCATGCAGGTGATAATTCGCCTAATGGACTTAAAAGGCGCGCACTATGAGGTCAAAGCATTTGAAGACTACAAGTTTCTTAACTCCTCATATGTTCCTGTGCTTCGGCAACTGGAGTCAGCAAACCTCCAGAAGTTCTATTTTGAGAACAAGCTTGAGAATGCTACAAAAGATGCTAGTANTATGAAGTTTAGGAACCCCAAGTATCTCTCGATGCTCAATCACTTGCGGTTCTATTTGCCGGAGATGTACCCAAAGCTGCACCGGATACTTTTCTTGGATGATGATGTTGTGGTACAGCGGGATCTTACAGGATTGTGGGANGATTGACATNGGATGGGAAGGTGAATGGAGCAGTTNGAACATGCTTTGGATCCGTTTCATCGG ATTn                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CB096529             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           aggggGATGCTAGTAATATGAAGTTTAGGAACCCCAAGTATCTCTCGATGCTCAATCACTTGCGGTTCTATTTGCCGGAGATGTACCCAAAGCTGCACCGGATACTTTTCTTGGATGATGATGTTGTGGTACAGCGGGATCTTACAGGATTGT GGAAGATTGACAT GGATGGGAAGGTGAATGGAGCAGTGGAAACATGCTTTGGAT CGTTTCATCGGTATTGGCAGTATATGAACTTCTCGCACCCACTTATCAAAGAGAGGTTTAATCCTAATGCATGTGGATGGGCATATGGCATGAACTTCTTTGATCTTGATTCTTGGAGGAGAGAAAAGAGTACTGAGCAATATCATTACTGGCAGAGTCAGAATGAGAACAGGACATTATGGAAGCTAGGAACGTTGCCTCCTGGTTTGATCACATTCTACTCCACCACAAAGCCTCTGGAAAAATCTTGGCATGTTCTTGGACTCGGGTACAATCCAAGCATAAGCATGGAGGAGATTAGAAACGCTGCTGTTGTGCATTTCAACGGGAACATGAAGCCCTGGCTGGATATCGGTATGAACTAGTTCAGGCACCTATGGACAAAATACGTGGATTACGACGACTCATTCATTCGCCAATGCAATTTTGCACCACCGTAGAAGGAAAAGCCTTTGCCATTGTTCTACAGATATCAAGGAAGATTGGTAACTAGAGCTAGAGCCAC TGTAACAGTTAACACATGTACTATCGCATG TTTTGT GGAAATCTCAGGAGCCTGCGAATTAGAACTGCGGGAGG                                                                                                                                                                                                                        ]
[-] EMBL CB643031             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AGGTGAATGGAGCAGTGGAAACATGCTTTGGAT CGTTTCATCGGTATTGGCAGTATATGAACTTCTCGCACCCACTTATCAAAGAGAAGTTTAATCCTAATGCATGTGGATGGGCATATGGCATGAACTTCTTTGATCTTGATTCTTGGAGGAGAGAAAAGAGTACTGAGCAATATCATTACTGGCAGAGTCAGAATGAGAACAGGACATTATGGAAGCTAGGAACGTTGCCTCCTGGTTTGATCACATTCTACTCCACCACAAAGCCTCTGGAAAAATCTTGGCATGTTCTTGGACTCGGGTACAATCCAAGCATAAGCATGGAGGAGATTAGAAACGCTGCTGTTGTGCATTTCAACGGGAACATGAAGCCCTGGCTGGATATCGGTATGAACCAGTTCAGGCACCTATGGACAAAATACGTGGATTACGACGACTCATTCATTCGCCAATGCAATTTTGCACCACCGTAGAAGGAAAAGCCTTTGCCATTGTTCTACAGATATCAAGGAAGATTGGTAACTAGAGCTAGAGCCAC TGTAACAGTTAACACATGTACTATCGCATG TTTTGT GGAAATCTCAGGAGCCTGCGAATTAGAACTGC GGAGGACAAGAAATTCTTTCTAGATCTTGTTGTATGTCATCGATTAAGTTATGGTGAAAATGCTGTTCAAAACATGAACATTATTTTCATCCCGTTTGTAATAATCTTATGCGTGTCAGCGTGTGTATGCCAAAGTCATGTGCTATGTTCATAATGGGAAGACAATCTTACTAGGACAAATTATCAGAAAAAAAAAGA                       ]
[+] EMBL C73265               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AGAACAGGACATTATGGAAGCTAGGAACGTTGCCTCCTGGTTTNATCACATTCTACTCCACCACAAAGCCTCTGGAAAAATCTTGGCATGTNCTTGGACTCGGGTACAATCCAAGCATAAGCATGGAGGAGATTAGAAACGCTGCTGTTGTGCATTTCAACGGGAACATGAAGCCCTGGCTGGATATCGGTATGAACCAGTTCAGGCACCTATGGACAAAATACGTGGATTACGACGACTCATTCATTCGCCAATGCAATTTTGCACCACCGTAGAAGGAAAAGCCTTTGCCATTGTTCTACAGATATCAAGGAAGATTGGTACCTAGAGCTAGAGCCACTTGTAACAGTTACCACATGTACTATCGCATGTTTTTGTGGGAAATCTCAGGAGCCTGCGn                                                                                                                                                                                                                                         ]
[+] EMBL CA767412             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GACATTATGGAAGCTAGGAACGTTGCCTCCTGGTTTGATCACATTCTACTCCACCACAAAGCCTCTGGAAAAATCTTGGCATGTTCTTGGACTCGGGTACAATCCAAGCATAAGCATGGAGGAGATTAGAAACGCTGCTGTTGTGCATTTCAACGGGAACATGAAGCCCTGGCTGGATATCGGTATGAACCAGTTCAGGCACCTATGGACAAAATACGTGGATTACGACGACTCATTCATTCGCCAATGCAATTTTGCACCACCGTAGAAGGAAAAGCCTTTGCCATTGTTCTACAGATATCAAGGAAGATTGGTAACTAGAGCTAGAGCCAC TGTAACAGTTAACACATGTACTATCGCATG TTTTGT GGAAATCTCAGGAGCCTGCGAATTAGAACTGC GGAGGACAAGAAATTCTTTCTAGATCTTGTTGTATGTCATCGATTAAGTTATGGTGAAAATGCTGTTCAAAACATGAACATTATTTTCATCCCGTTTGTAATAATCTTATGCGTGTCAGCGTGTGTATGCCAAAGTCATGTGCTATGTTCATAATATGAAGACAATCTTACTAGGACAAATTATCAGAAGATCAATGAACTCCTGTAGAGAAATATTGNGC]
[+] EMBL AU161988             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TGGAAAANTCTTGGCATGTTCTTGGACTCGGGTACAATCCAAGCATAAGCATGGAGGAGATTAGAANCGCTGCTGTTGTGCATTTCAACGGGAACATGAAGCCCTGGCTGGATATCGGTATGAACCAGTTCAGGCACCTATGGACAAAATACGTGGATTACGACGACTCATTCATTCGCCAATGCAATTTTGCACCACCGTAGAAGGAAAAGCCTTTGCCATTGTTCTACAGATATCAAGGAAGATTGGTAACTAGAGCTAGAGCCAC TGTAACAGTTAANACATGTACTATCGCATG TTTTGT GGAAATCTCAGGAGCCTGCGAATTAGAACTGC GGAGGACAAGAAATTCTTTCTAGATCTTGTTGTATGTCATCGATTAAGTTATGGTGAAAATGCTGTTCAAANCATGAACATTATTTTCANCCCGTTTGTAATAATCTTATGCGTGTCAGCGTGTGTATGCCAAAGTCATGTGCTATGTTCATAATATGAAGACAATCTTACTAGGACAAATTATCAGAAGATCAATGAACTCCTGTAGAGAAAaaaaaa  ]
[+] EMBL CF328111             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CATTCATTCGCCAATGCAATTTTGCACCACCGTAGAAGGAAAAGCCTTTGCCATTGTTCTACAGATATCAAGGAAGATTGGTAACTAGAGCTAGAGCCAC TGTAACAGTTAACACATGTACTATCGCATG TTTTGT GGAAATCTCAGGAGCCTGCGAATTAGAACTGC GGAGGACAAGAAATTCTTTCTAGATCTTGTTGTATGTCATCGATTAAGTTATGGTGAAAATGCTGTTCAAAACATGAACATTATTTTCATCCCGTTTGTAATAATCTTATGCGTGTCAGCGTGTGTATGCCAAAGTCATGTGCTATGTTCATAATATGAAGACAATCTTACTAGGACAAAaaaaaaa                                  ]
[-] EMBL CF328112             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ATTCATTCGCCAATGCAATTTTGCACCACCGTAGAAGGAAAAGCCTTTGCCATTGTTCTACAGATATCAAGGAAGATTGGTAACTAGAGCTAGAGCCAC TGTAACAGTTAACACATGTACTATCGCATG TTTTGT GGAAATCTCAGGAGCCTGCGAATTAGAACTGC GGAGGACAAGAAATTCTTTCTAGATCTTGTTGTATGTCATCGATTAAGTTATGGTGAAAATGCTGTTCAAAACATGAACATTATTTTCATCCCGTTTGTAATAATCTTATGCGTGTCAGCGTGTGTATGCCAAAGTCATGTGCTATGTTCATAATATGAAGACAATCTTACTAGGCCAAAaaaaaaaa                                 ]




>consensus_14020#0
CGGCGGCTGTCAACGGGGACCGGCTCAGGGCGGAGCAGATCCGGAAGCAGGCGAAGGACG
CGGCGGCCTCCGCCGCCGCGCTGGCCGCGGCGTCGCGCAGGCTCCACCTCGACCGCGCGC
GCCACCTCCGGCTGCTCTCCTCCCTCCACCGCAACCTCACCGCCACGCTCCGTGACCTCA
GCGCCGCCGCGTCGGCGTCGGCGTCCGCGTCCGCGTCCGAGGCCGGCTACGCGTCGGCGG
GGGACGAGGTGCGGCGGCTCGACCTTCAGGCCAAGGACCTGATCCGCGCCGCGCGCGCCG
CCATCGCGGACGCCAAGCCGCTGTTCGACCCGCAGCTCAAGATCCAGCGGCTCAAGGACG
CCATCTTCGCGCAGAACGAGTTGCTCGCGCGCGCCAAGAAGCGCGGCGCCTTCGCCTCCC
TCATCGCCGCCAAGTCCATCCCCAAGCCGCTCCACTGCCTCGCCGTCCGCCTCACCGCCG
AGCGGATCGCACGGCCCGAGAATTACGCCGACCCGGTGCCGCCGCCGCACGCGCTCGAGG
ACCCCGCCATGTTCCACTACGCCATCTTCTCCGACAACGTCCTCGCCGCCTCCGTCGTCG
TGCGCTCCGCCGTCGCCAACTCGCTCGACCCCTCCAAGCACGTCTTCCACGTCGTCACCG
ACCGAATGAACCTTGGCGCCATGCAGGTGATAATTCGCCTAATGGACTTAAAAGGCGCGC
ACTATGAGGTCAAAGCATTTGAAGACTACAAGTTTCTTAACTCCTCATATGTTCCTGTGC
TTCGGCAACTGGAGTCAGCAAACCTCCAGAAGTTCTATTTTGAGAACAAGCTTGAGAATG
CTACAAAAGATGCTAGTAATATGAAGTTTAGGAACCCCAAGTATCTCTCGATGCTCAATC
ACTTGCGGTTCTATTTGCCGGAGATGTACCCAAAGCTGCACCGGATACTTTTCTTGGATG
ATGATGTTGTGGTACAGCGGGATCTTACAGGATTGTGGAAGATTGACATGGATGGGAAGG
TGAATGGAGCAGTGGAAACATGCTTTGGATCGTTTCATCGGTATTGGCAGTATATGAACT
TCTCGCACCCACTTATCAAAGAGAAGTTTAATCCTAATGCATGTGGATGGGCATATGGCA
TGAACTTCTTTGATCTTGATTCTTGGAGGAGAGAAAAGAGTACTGAGCAATATCATTACT
GGCAGAGTCAGAATGAGAACAGGACATTATGGAAGCTAGGAACGTTGCCTCCTGGTTTGA
TCACATTCTACTCCACCACAAAGCCTCTGGAAAAATCTTGGCATGTTCTTGGACTCGGGT
ACAATCCAAGCATAAGCATGGAGGAGATTAGAAACGCTGCTGTTGTGCATTTCAACGGGA
ACATGAAGCCCTGGCTGGATATCGGTATGAACCAGTTCAGGCACCTATGGACAAAATACG
TGGATTACGACGACTCATTCATTCGCCAATGCAATTTTGCACCACCGTAGAAGGAAAAGC
CTTTGCCATTGTTCTACAGATATCAAGGAAGATTGGTAACTAGAGCTAGAGCCACTGTAA
CAGTTAACACATGTACTATCGCATGTTTTGTGGAAATCTCAGGAGCCTGCGAATTAGAAC
TGCGGAGGACAAGAAATTCTTTCTAGATCTTGTTGTATGTCATCGATTAAGTTATGGTGA
AAATGCTGTTCAAAACATGAACATTATTTTCATCCCGTTTGTAATAATCTTATGCGTGTC
AGCGTGTGTATGCCAAAGTCATGTGCTATGTTCATAATATGAAGACAATCTTACTAGGAC
AAATTATCAGAAGATCAATGAACTCCTGTAGAGAAATATTGNGC

consensusID : consensus_14020#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 664
fasta sequence

                              [TTAATCCTAATGCATGTGGATGGGCATATGGCATGAACTTCTTTGATCTTGATTCTTGGAGGAGAGAAAAGAGTACTGAGCAATATCATTACTGGCAGAGTCAGAATGAGAACAGGCCATTATGGAAGCTAGGAACGTTGCCTCCTGGTTTGATCACATTCTACTCCACCACAAAGCCTCTGGAAAAATCTTGGCATGTTCTTGGACTCGGGTACAATCCAAGCATAAGCATGGAGGAGATTAGAAACGCTGCTGTTGTGCATTTCAACGGGAACATGAAGCCCTGGCTGGATATCGGTATGAACCAGTTCAGGCACCTATGGACAAAATACGTGGATTACGACGACTCATTCATTCGCCAATGCAATTTTGCACCACCGTAGAAGGAAAAGCCTTTGCCATTGTTCTACAGATATCAAGGAAGATTGGTAACTAGAGCTAGAGCCACTGTAACAGTTAACACATGTACTATCGCATGTTTTGTGGAAATCTCAGGAGCCTGCGAATTAGAACTACGGAGGACAAGAAATTCTTTCTAGATCTTGTTGTATGTCATCGATTAAGTTATGGTGAAAATGCTGTTCAAAACATGAACATTATTTTCATCCCGTTTGTAATAATTTTATGCGTGTCAAGCGTGTGTATGCCAAAAAAAAAAAAAAAA]

[-] EMBL CA763555             [TTAATCCTAATGCATGTGGATGGGCATATGGCATGAACTTCTTTGATCTTGATTCTTGGAGGAGAGAAAAGAGTACTGAGCAATATCATTACTGGCAGAGTCAGAATGAGAACAGGCCATTATGGAAGCTAGGAACGTTGCCTCCTGGTTTGATCACATTCTACTCCACCACAAAGCCTCTGGAAAAATCTTGGCATGTTCTTGGACTCGGGTACAATCCAAGCATAAGCATGGAGGAGATTAGAAACGCTGCTGTTGTGCATTTCAACGGGAACATGAAGCCCTGGCTGGATATCGGTATGAACCAGTTCAGGCACCTATGGACAAAATACGTGGATTACGACGACTCATTCATTCGCCAATGCAATTTTGCACCACCGTAGAAGGAAAAGCCTTTGCCATTGTTCTACAGATATCAAGGAAGATTGGTAACTAGAGCTAGAGCCACTGTAACAGTTAACACATGTACTATCGCATGTTTTGTGGAAATCTCAGGAGCCTGCGAATTAGAACTACGGAGGACAAGAAATTCTTTCTAGATCTTGTTGTATGTCATCGATTAAGTTATGGTGAAAATGCTGTTCAAAACATGAACATTATTTTCATCCCGTTTGTAATAATTTTATGCGTGTCAAGCGTGTGTATGCCAAAAAAAAAAAAAAAA]
[+] EMBL BE607487             [                                                                                                                                                                               GCCTCTGGAAAAATCTTGGCATGTTCTTGGACTCGGGTACAATCCAAGCATAAGCATGGAGGAGATTAGAAACGCTGCTGTTGTGCATTTCAACGGGAACATGAAGCCCTGGCTGGATATCGGTATGAACCAGTTCAGGCACCTATGGACAAAATACGTGGATTACGACGACTCATTCATTCGCCAATGCAATTTTGCACCACCGTAGAAGGAAAAGCCTTTGCCATTGTTCTACAGATATCAAGGAAGATTGGTAACTAGAGCTAGAGCCACTGTAACAGTTAACACATGTACTATCGCATGTTTTGTGGAAATCTCAGGAGCCTGCGAATTAGAACTACGGAGGACAAGAAATTCTTTCTAGATCTTGTTGTATGTCATCGATTAAGTTATGG                                                                                              ]




>consensus_14020#1
TTAATCCTAATGCATGTGGATGGGCATATGGCATGAACTTCTTTGATCTTGATTCTTGGA
GGAGAGAAAAGAGTACTGAGCAATATCATTACTGGCAGAGTCAGAATGAGAACAGGCCAT
TATGGAAGCTAGGAACGTTGCCTCCTGGTTTGATCACATTCTACTCCACCACAAAGCCTC
TGGAAAAATCTTGGCATGTTCTTGGACTCGGGTACAATCCAAGCATAAGCATGGAGGAGA
TTAGAAACGCTGCTGTTGTGCATTTCAACGGGAACATGAAGCCCTGGCTGGATATCGGTA
TGAACCAGTTCAGGCACCTATGGACAAAATACGTGGATTACGACGACTCATTCATTCGCC
AATGCAATTTTGCACCACCGTAGAAGGAAAAGCCTTTGCCATTGTTCTACAGATATCAAG
GAAGATTGGTAACTAGAGCTAGAGCCACTGTAACAGTTAACACATGTACTATCGCATGTT
TTGTGGAAATCTCAGGAGCCTGCGAATTAGAACTACGGAGGACAAGAAATTCTTTCTAGA
TCTTGTTGTATGTCATCGATTAAGTTATGGTGAAAATGCTGTTCAAAACATGAACATTAT
TTTCATCCCGTTTGTAATAATTTTATGCGTGTCAAGCGTGTGTATGCCAAAAAAAAAAAA
AAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14020#0      CGGCGGCTGTCAACGGGGACCGGCTCAGGGCGGAGCAGATCCGGAAGCAGGCGAAGGACG 60
consensus_14020#1      ------------------------------------------------------------
                                                                                   

consensus_14020#0      CGGCGGCCTCCGCCGCCGCGCTGGCCGCGGCGTCGCGCAGGCTCCACCTCGACCGCGCGC 120
consensus_14020#1      ------------------------------------------------------------
                                                                                   

consensus_14020#0      GCCACCTCCGGCTGCTCTCCTCCCTCCACCGCAACCTCACCGCCACGCTCCGTGACCTCA 180
consensus_14020#1      ------------------------------------------------------------
                                                                                   

consensus_14020#0      GCGCCGCCGCGTCGGCGTCGGCGTCCGCGTCCGCGTCCGAGGCCGGCTACGCGTCGGCGG 240
consensus_14020#1      ------------------------------------------------------------
                                                                                   

consensus_14020#0      GGGACGAGGTGCGGCGGCTCGACCTTCAGGCCAAGGACCTGATCCGCGCCGCGCGCGCCG 300
consensus_14020#1      ------------------------------------------------------------
                                                                                   

consensus_14020#0      CCATCGCGGACGCCAAGCCGCTGTTCGACCCGCAGCTCAAGATCCAGCGGCTCAAGGACG 360
consensus_14020#1      ------------------------------------------------------------
                                                                                   

consensus_14020#0      CCATCTTCGCGCAGAACGAGTTGCTCGCGCGCGCCAAGAAGCGCGGCGCCTTCGCCTCCC 420
consensus_14020#1      ------------------------------------------------------------
                                                                                   

consensus_14020#0      TCATCGCCGCCAAGTCCATCCCCAAGCCGCTCCACTGCCTCGCCGTCCGCCTCACCGCCG 480
consensus_14020#1      ------------------------------------------------------------
                                                                                   

consensus_14020#0      AGCGGATCGCACGGCCCGAGAATTACGCCGACCCGGTGCCGCCGCCGCACGCGCTCGAGG 540
consensus_14020#1      ------------------------------------------------------------
                                                                                   

consensus_14020#0      ACCCCGCCATGTTCCACTACGCCATCTTCTCCGACAACGTCCTCGCCGCCTCCGTCGTCG 600
consensus_14020#1      ------------------------------------------------------------
                                                                                   

consensus_14020#0      TGCGCTCCGCCGTCGCCAACTCGCTCGACCCCTCCAAGCACGTCTTCCACGTCGTCACCG 660
consensus_14020#1      ------------------------------------------------------------
                                                                                   

consensus_14020#0      ACCGAATGAACCTTGGCGCCATGCAGGTGATAATTCGCCTAATGGACTTAAAAGGCGCGC 720
consensus_14020#1      ------------------------------------------------------------
                                                                                   

consensus_14020#0      ACTATGAGGTCAAAGCATTTGAAGACTACAAGTTTCTTAACTCCTCATATGTTCCTGTGC 780
consensus_14020#1      ------------------------------------------------------------
                                                                                   

consensus_14020#0      TTCGGCAACTGGAGTCAGCAAACCTCCAGAAGTTCTATTTTGAGAACAAGCTTGAGAATG 840
consensus_14020#1      ------------------------------------------------------------
                                                                                   

consensus_14020#0      CTACAAAAGATGCTAGTAATATGAAGTTTAGGAACCCCAAGTATCTCTCGATGCTCAATC 900
consensus_14020#1      ------------------------------------------------------------
                                                                                   

consensus_14020#0      ACTTGCGGTTCTATTTGCCGGAGATGTACCCAAAGCTGCACCGGATACTTTTCTTGGATG 960
consensus_14020#1      ------------------------------------------------------------
                                                                                   

consensus_14020#0      ATGATGTTGTGGTACAGCGGGATCTTACAGGATTGTGGAAGATTGACATGGATGGGAAGG 1020
consensus_14020#1      ------------------------------------------------------------
                                                                                   

consensus_14020#0      TGAATGGAGCAGTGGAAACATGCTTTGGATCGTTTCATCGGTATTGGCAGTATATGAACT 1080
consensus_14020#1      ------------------------------------------------------------
                                                                                   

consensus_14020#0      TCTCGCACCCACTTATCAAAGAGAAGTTTAATCCTAATGCATGTGGATGGGCATATGGCA 1140
consensus_14020#1      ---------------------------TTAATCCTAATGCATGTGGATGGGCATATGGCA 33
                                                  *********************************

consensus_14020#0      TGAACTTCTTTGATCTTGATTCTTGGAGGAGAGAAAAGAGTACTGAGCAATATCATTACT 1200
consensus_14020#1      TGAACTTCTTTGATCTTGATTCTTGGAGGAGAGAAAAGAGTACTGAGCAATATCATTACT 93
                       ************************************************************

consensus_14020#0      GGCAGAGTCAGAATGAGAACAGGACATTATGGAAGCTAGGAACGTTGCCTCCTGGTTTGA 1260
consensus_14020#1      GGCAGAGTCAGAATGAGAACAGGCCATTATGGAAGCTAGGAACGTTGCCTCCTGGTTTGA 153
                       *********************** ************************************

consensus_14020#0      TCACATTCTACTCCACCACAAAGCCTCTGGAAAAATCTTGGCATGTTCTTGGACTCGGGT 1320
consensus_14020#1      TCACATTCTACTCCACCACAAAGCCTCTGGAAAAATCTTGGCATGTTCTTGGACTCGGGT 213
                       ************************************************************

consensus_14020#0      ACAATCCAAGCATAAGCATGGAGGAGATTAGAAACGCTGCTGTTGTGCATTTCAACGGGA 1380
consensus_14020#1      ACAATCCAAGCATAAGCATGGAGGAGATTAGAAACGCTGCTGTTGTGCATTTCAACGGGA 273
                       ************************************************************

consensus_14020#0      ACATGAAGCCCTGGCTGGATATCGGTATGAACCAGTTCAGGCACCTATGGACAAAATACG 1440
consensus_14020#1      ACATGAAGCCCTGGCTGGATATCGGTATGAACCAGTTCAGGCACCTATGGACAAAATACG 333
                       ************************************************************

consensus_14020#0      TGGATTACGACGACTCATTCATTCGCCAATGCAATTTTGCACCACCGTAGAAGGAAAAGC 1500
consensus_14020#1      TGGATTACGACGACTCATTCATTCGCCAATGCAATTTTGCACCACCGTAGAAGGAAAAGC 393
                       ************************************************************

consensus_14020#0      CTTTGCCATTGTTCTACAGATATCAAGGAAGATTGGTAACTAGAGCTAGAGCCACTGTAA 1560
consensus_14020#1      CTTTGCCATTGTTCTACAGATATCAAGGAAGATTGGTAACTAGAGCTAGAGCCACTGTAA 453
                       ************************************************************

consensus_14020#0      CAGTTAACACATGTACTATCGCATGTTTTGTGGAAATCTCAGGAGCCTGCGAATTAGAAC 1620
consensus_14020#1      CAGTTAACACATGTACTATCGCATGTTTTGTGGAAATCTCAGGAGCCTGCGAATTAGAAC 513
                       ************************************************************

consensus_14020#0      TGCGGAGGACAAGAAATTCTTTCTAGATCTTGTTGTATGTCATCGATTAAGTTATGGTGA 1680
consensus_14020#1      TACGGAGGACAAGAAATTCTTTCTAGATCTTGTTGTATGTCATCGATTAAGTTATGGTGA 573
                       * **********************************************************

consensus_14020#0      AAATGCTGTTCAAAACATGAACATTATTTTCATCCCGTTTGTAATAATCTTATGCGTGTC 1740
consensus_14020#1      AAATGCTGTTCAAAACATGAACATTATTTTCATCCCGTTTGTAATAATTTTATGCGTGTC 633
                       ************************************************ ***********

consensus_14020#0      A-GCGTGTGTATGCCAAAGTCATGTGCTATGTTCATAATATGAAGACAATCTTACTAGGA 1799
consensus_14020#1      AAGCGTGTGTATGCCAAAAAAAAAAAAAAAA----------------------------- 664
                       * ****************   *      *                               

consensus_14020#0      CAAATTATCAGAAGATCAATGAACTCCTGTAGAGAAATATTGNGC 1844
consensus_14020#1      ---------------------------------------------