cluster # 14040

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Oryza sativa
cluster # 14040 cluster # 14040 Sequences # 15 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_14040#0 length = 1073 sequences # 13

consensus_14040#1 length = 515 sequences # 1
consensus_14040#2 length = 429 sequences # 1

consensusID : consensus_14040#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 13
consensus length = 1073
fasta sequence

                              [GCAGCAGCAGCAGCAGCAACTTCCACTGAAACAACCCACCGAGGCAGCAGAAGAAAGGAAAGAATCAAGAAAGCTTCATCGTCTTCATGGGGAGGTCACCGTGCTGCGAGAAGGCACACACCAACAAGGGAGCATGGACCAAGGAGGAAGATGACCGGCTCATTGCCTACATCAAGGCGCACGGCGAAGGTTGCTGGCGATCGC-TGCCCAAGGCCGCCGGCCTC-CTCCGCTGTGGCAAGAGCTGCCGCCTCCGGTGGATCAAC-TACCTCCGGCCTGACCTCAAGCGCGGCAAC-TTCACCGAGGAGGAGGATGAGCTGATCATCAAGCTTCACAGCCTTTTAGGCAACAAATGGTCTC-TGATAG-CCGGGAGG-TTGCCA-GGAAGAAC-GGACAACGAGATCAAGAAC-TAC-TGGAACAC-GCACA-TC-AGGAGGAAGCTGCTGAGCCGTGGCATCGACCCGGTGACACACCGGCCGATCAACGACAGCGCGTCCAACATCACCATATCATTCGAGGCGGCCGCGGCGGCGGCGAGGGACGACAAGGCCGCCGTGTTCCGGCGAGAGGACCATCCTCATCAGCCGAAGGCGGT-GACAGTGGCACAGGAGCAGCAGGCAGCCGCCGATTGGGGCCATGGGAAGCCACTCAAGTGCCCTGACCTCAATCTGGACCTCTGCATCAGCCTCCCTTCCCAAGAAGAGCCCATGATGATGAAGCCGGTGAAGAGGGAGACCGGCGTCTGCTTCAGCTGCAGCCTGGGGCTCCCCAAGAGCACAGACTGCAAGTGCAGCAGCTTCCTGGGACTCAGGAC-AGCCATGCTCGACTTCAGAAGCTTGGAAATGAAATGAGCACCTCCTCCTCTGTAGTTTCTTCTTTCGTTTTGTCACTTGGATATTGGTTAGCTTTTCTTCTAGGTGAAAACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAACATCTCCTCTGCTGCTCTTGCTGCTCCATTTTGTCTCTGTTGTAATTACCATATATTGACTAATCATGACAAATAATACTTGATGCTAAGTAAGTAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK111966             [GCAGCAGCAGCAGCAGCAACTTCCACTGAAACAACCCACCGAGGCAGCAGAAGAAAGGAAAGAATCAAGAAAGCTTCATCGTCTTCATGGGGAGGTCACCGTGCTGCGAGAAGGCACACACCAACAAGGGAGCATGGACCAAGGAGGAAGATGACCGGCTCATTGCCTACATCAAGGCGCACGGCGAAGGTTGCTGGCGATCGC TGCCCAAGGCCGCCGGCCTC CTCCGCTGTGGCAAGAGCTGCCGCCTCCGGTGGATCAAC TACCTCCGGCCTGACCTCAAGCGCGGCAAC TTCACCGAGGAGGAGGATGAGCTGATCATCAAGCTTCACAGCCTTTTAGGCAACAAATGGTCTC TGATAG CCGGGAGG TTGCCA GGAAGAAC GGACAACGAGATCAAGAAC TAC TGGAACAC GCACA TC AGGAGGAAGCTGCTGAGCCGTGGCATCGACCCGGTGACACACCGGCCGATCAACGACAGCGCGTCCAACATCACCATATCATTCGAGGCGGCCGCGGCGGCGGCGAGGGACGACAAGGCCGCCGTGTTCCGGCGAGAGGACCATCCTCATCAGCCGAAGGCGGT GACAGTGGCACAGGAGCAGCAGGCAGCCGCCGATTGGGGCCATGGGAAGCCACTCAAGTGCCCTGACCTCAATCTGGACCTCTGCATCAGCCTCCCTTCCCAAGAAGAGCCCATGATGATGAAGCCGGTGAAGAGGGAGACCGGCGTCTGCTTCAGCTGCAGCCTGGGGCTCCCCAAGAGCACAGACTGCAAGTGCAGCAGCTTCCTGGGACTCAGGAC AGCCATGCTCGACTTCAGAAGCTTGGAAATGAAATGAGCACCTCCTCCTCTGTAGTTTCTTCTTTCGTTTTGTCACTTGGATATTGGTTAGCTTTTCTTCTAGGTGAAAACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAACATCTCCTCTGCTGCTCTTGCTGCTCCATTTTGTCTCTGTTGTAATTACCATATATTGACTAATCATGACAAATAAT                                        ]
[+] EMBL AK104408             [  AGCAGCAGCAGCAGCAACTTCCACTGAAACAACCCACCGAGGCAGCAGAAGAAAGGAAAGAATCAAGAAAGCTTCATCGTCTTCATGGGGAGGTCACCGTGCTGCGAGAAGGCACACACCAACAAGGGAGCATGGACCAAGGAGGAAGATGACCGGCTCATTGCCTACATCAAGGCGCACGGCGAAGGTTGCTGGCGATCGC TGCCCAAGGCCGCCGGCCTC CTCCGCTGTGGCAAGAGCTGCCGCCTCCGGTGGATCAAC TACCTCCGGCCTGACCTCAAGCGCGGCAAC TTCACCGAGGAGGAGGATGAGCTGATCATCAAGCTTCACAGCCTTTTAGGCAACAAATGGTCTC TGATAG CCGGGAGG TTGCCA GGAAGAAC GGACAACGAGATCAAGAAC TAC TGGAACAC GCACA TC AGGAGGAAGCTGCTGAGCCGTGGCATCGACCCGGTGACACACCGGCCGATCAACGACAGCGCGTCCAACATCACCATATCATTCGAGGCGGCCGCGGCGGCGGCGAGGGACGACAAGGCCGCCGTGTTCCGGCGAGAGGACCATCCTCATCAGCCGAAGGCGGT GACAGTGGCACAGGAGCAGCAGGCAGCCGCCGATTGGGGCCATGGGAAGCCACTCAAGTGCCCTGACCTCAATCTGGACCTCTGCATCAGCCTCCCTTCCCAAGAAGAGCCCATGATGATGAAGCCGGTGAAGAGGGAGACCGGCGTCTGCTTCAGCTGCAGCCTGGGGCTCCCCAAGAGCACAGACTGCAAGTGCAGCAGCTTCCTGGGACTCAGGAC AGCCATGCTCGACTTCAGAAGCTTGGAAATGAAATGAGCACCTCCTCCTCTGTAGTTTCTTCTTTCGTTTTGTCACTTGGATATTGGTTAGCTTTTCTTCTAGGTGAAAACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAACATCTCCTCTGCTGCTCTTGCTGCTCCATTTTGTCTCTGTTGTAATTACCATATATTGACTAATCATGACAAATAATACTT                                    ]
[+] EMBL AK104457             [  AGCAGCAGCAGCAGCAACTTCCACTGAAACAACCCACCGAGGCAGCAGAAGAAAGGAAAGAATCAAGAAAGCTTCATCGTCTTCATGGGGAGGTCACCGTGCTGCGAGAAGGCACACACCAACAAGGGAGCATGGACCAAGGAGGAAGATGACCGGCTCATTGCCTACATCAAGGCGCACGGCGAAGGTTGCTGGCGATCGC TGCCCAAGGCCGCCGGCCTC CTCCGCTGTGGCAAGAGCTGCCGCCTCCGGTGGATCAAC TACCTCCGGCCTGACCTCAAGCGCGGCAAC TTCACCGAGGAGGAGGATGAGCTGATCATCAAGCTTCACAGCCTTTTAGGCAACAAATGGTCTC TGATAG CCGGGAGG TTGCCA GGAAGAAC GGACAACGAGATCAAGAAC TAC TGGAACAC GCACA TC AGGAGGAAGCTGCTGAGCCGTGGCATCGACCCGGTGACACACCGGCCGATCAACGACAGCGCGTCCAACATCACCATATCATTCGAGGCGGCCGCGGCGGCGGCGAGGGACGACAAGGCCGCCGTGTTCCGGCGAGAGGACCATCCTCATCAGCCGAAGGCGGT GACAGTGGCACAGGAGCAGCAGGCAGCCGCCGATTGGGGCCATGGGAAGCCACTCAAGTGCCCTGACCTCAATCTGGACCTCTGCATCAGCCTCCCTTCCCAAGAAGAGCCCATGATGATGAAGCCGGTGAAGAGGGAGACCGGCGTCTGCTTCAGCTGCAGCCTGGGGCTCCCCAAGAGCACAGACTGCAAGTGCAGCAGCTTCCTGGGACTCAGGAC AGCCATGCTCGACTTCAGAAGCTTGGAAATGAAATGAGCACCTCCTCCTCTGTAGTTTCTTCTTTCGTTTTGTCACTTGGATATTGGTTAGCTTTTCTTCTAGGTGAAAACACAC  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAACATCTCCTCTGCTGCTCTTGCTGCTCCATTTTGTCTCTGTTGTAATTACCATATATTGACTAATCATGACAAATAAT                                        ]
[+] EMBL AU173093             [                            AAACAACCCACCGAGGCAGCAGAAGAAAGGAAAGAATCAAGAAAGCTTCATCGTCTTCATGGGGAGGTCACCGTGCTGCGAGAAGGCACACACCAACAAGGGAGCATGGACCAAGGAGGAAGATGACCGGCTCATTGCCTACATCAAGGCGCACGGCGAAGGTTGCTGGCGATCGC TGCCCAAGGCCGCCGGCCTC CTCCGCTGTGGCAAGAGCTGCCGCCTCCGGTGGATCAAC TACCTCCGGCCTGACCTCAAGCGCGGCAAC TTCACCGAGGAGGAGGATGAGCTGATCATCAAGCTTCACAGCCTTTTAGGCAACAAATGGTCTC TGATAG CCGGGAGG TTGCCA GGAAGAAC GGACAACGAGATCAAGAAC TAC TGGAACAC GCACA TC AGGAGGAAGCTGCTGAGCCGTGGCATCGACCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AU184006             [                            AAACAACCCACCGAGGCAGCAGAAGAAAGGAAAGAATCAAGAAAGCTTCATCGTCTTCATGGGGAGGTCACCGTGCTGCGAGAAGGCACACACCAACAAGGGAGCATGGACCAAGGAGGAAGATGACCGGCTCATTGCCTACATCAAGGCGCACGGCGAAGGTTGCTGGCGATCGC TGCCCAAGGCCGCCGGCCTC CTCCGCTGTGGCAAGAGCTGCCGCCTCCGGTGGATCAAC TACCTCCGGCCTGACCTCAAGCGCGGCAAC TTCACCGAGGAGGAGGATGAGCTGATCATCAAGCTTCACAGCCTTTTAGGCAACAAATGGTCTC TGATAG CCGGGAGG TTGCCA GGAAGAAC GGACAACGAGATCAAGAAC TAC TGGAACAC GCACA TC AGGAGGAAGCTGCTGAGCCGTGGCATCGACCCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL C73657               [                                             AGCAGAAGAAAGGAAAGAATCAAGAAAGCTTCATCGTCTTCATGGGGAGGTCACCGTGCTGCGAGAAGGCACACACCAACAAGGGAGCATGGACCAAGGAGGAAGATGACCGGCTCATTGCCTACATCAAGGCGCACGGC AAGGTTGCTGGCGATCGC TGCCCAAGGCCGCCG  CTCNCTCCGCTGTGGCAAGAGCTGCCGCCTCCGGTGGATCAAC TACCTCCGGCCTGACCTCAAGCGCGGCAAC TTCACCGAGGAGGAGGATGAGCTGATCATCAAGCTTCACAGCCTTTTAGGAAACAAATGGTCTC TGATAG CCGGGA G TTGCCA GGNAGAAC GGACAACGAGATCAAGAAC TACTTGGAACAC GCACA TC AGGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AU082325             [                                                   AGAAAGGAAAGAATCAAGAAAGCTTCATCGTCTTCATGGGGAGGTCACCGTGCTGCGAGAAGGCACACACCAACAAGGGAGCATGGACCAAGGAGGAAGATGACCGGCTCATTGCCTACATCAAGGCGCACGGCGAAGGTTGCTGGCGATCGC TGCCCAAGGCCGCCGGCCTC CTCCGCTGTGGCAAGAGCTGCCGCCTCCGGTGGATCAAC TACCTCCGGCCTGACCTCAAGCGCGGCAAC TTCACCGAGGAGGAGGATGAGCTGATCATCAAGCTTCACAGCCTTTTAGGCAACAAATGGTCTC TGATAG CCGGGAGG TTGCCA GGAAGAAC GGACAACGAGATCAAGAAC TAC TGGAACAC GCACA TC AGGAGGAAGCTGCTGAGCCGTGGCATCGACCCGGTGACACACCGGCCGATCAACGACAGCGCGTCCAACATCACCAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL C73814               [                                                   AGAAAGGAAAGAATCAAGAAAGCTTCATCGTCTTCATGGGGAGGTCACCGTGCTGCGAGAAGGCACACACCAACAAGGGAGCATGGACCAAGGAGGAAGATGACCGGCTCATTGCCTACATCAAGGCGCACGGCGAAGGTTGCTGGCGATCGCTTGCCCAAGGCCGCCGGCTTC CTCCGCTGTGGCAAGAGCTGCCGCCTCCGGTGGATCAACTTACCTCCGGCCTGACCTCAAGCGCGGCAACTTTCACCGAGGAGGAGGATGAGNTGATCATCAAGTTTCACAGNCTTTTAGGCAACAAATGGTCTCTTGATAGCCCGGGAGGTTTGCCAGGGAAGGACGGGACAACGAGATCAAGGACTTACTTNGGACACGGCACATTCAAGGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AU082322             [                                                                   AGAAAGCTTCATCGTCTTCATGGGGAGGTCACCGTGCTGCGAGAAGGCACACACCAACAAGGGAGCATGGACCAAGGAGGAAGATGACCGGCTCATTGCCTACATCAAGGCGCACGGCGAAGGTTGCTGGCGATCGC TGCCCAAGGCCGCCGGCCTC CTCCGCTGTGGCAAGAGCTGCCGCCTCCGGTGGATCAAC TACCTCCGGCCTGACCTCAAGCGCGGCAAC TTCACCGAGGAGGAGGATGAGCTGATCATCAAGCTTCACAGCCTTTTAGGCAACAAATGGTCTC TGATAG CCGGGAGG TTGCCA GGAAGAAC GGACAACGAGATCAAGAAC TAC TGGAACAC GCACA TC AGGAGGAAGCTGCTGAGCCGTGGCATCGACCCGGTGACACACCGGCCGATCAACGACAGCGCGTCCAACATCACCATATCATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CB679300             [                                                                                                                                                                                                                                                                                                                                         GCTTCTCTCACTTTTAGGCAACAAATGGTCTC TGATAG CCGGGAGG TTGCCA GGAAGAAC GGACAACGAGATCAAGAAC TAC TGGAACAC TCACA TC ATGAGGAAGCTGCTGAGCCGGGGCATCGACCCGGTGACACACCGGCCGATCAACGACAGCGCGTCCAACATCACCATATCATTCGAGGCGGCCGCGGCGGCGGCTAGGGACGACAAGGCCGCCGTGTTCCGGCGAGAGGACCATCCTCATCAGCCGAAGGCGGT GACAGTGGCACAGGAGCAGCAGGCAGCCGCCGATTGGGGCCATGGGAAGCCACTCAAGTGCCCTGACCTCAATCTGGACCTCTGCATCAGCCTCCCTTCCCAAGAAGAGCCCATGATGATGAAGCCGGTGAAGAGGGAGACCGGCGTCTGCTTCAGCTGCAGCCTGGGGCTCCCCAAGAGCACAGACTGCAAGTGCAGCAGCTTCCTGGGACTCACGAC AGCCATGCTCGACTTCATAAGCTTGGAAATGAAATGAGCACCTCCTCCTCTGTAGTTTCTTCTTTCGTTTTGTCACTTGGATATTGGTTAGCTTTTCTTCTAGGTGAAAACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAACATCTCCTCTGCGGTGCTCGCTGTTCCATTTTGTCTCTCTGGTGATTACAACATATTGTCTctt                                                     ]
[+] EMBL C99484               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GGCGGAGAGGGACGACAAGGCCGCCGTGTTCCGGCGAGAGGACCATCCTCATCAGCCGAA  CGNTAGACAGTGGCACAGGAGCAGCAGGCAGCCGCCGATTGGGGCCATGGGAAGCCACTCAAGTGCCCTGACCTCAATCTGGACCTCTGCATCAGCCTCCCTTCCCAAGAAGAGCCCATGATGATGAAGCCGGTGAAGAGGGAGACCGGCGTCTGCTTCAGCTGCAGCCTGGGGCTCCCCAAGAGCACAGACTGCAAGTGCAGCAGCTTCCTGGGACTCAGGAC AGCCATGCTCGACTTCAGAAGCTTGGAAATGAAATGAGCACCTCCTCCTCTGTAGTTTCTTCTTTCGTTTTGTCACTTGGATATTGGTTAGCTTTTCTTCTAGGTGAAAACACACAGAGAGAGAGANAGAGAGAGAGAGAGAGAGAGATAACATCTCCTCTGCTGCTCT                                                                                                   ]
[+] EMBL AU033208             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AGACCGGCGTCTGCTTCAGCTGCAGCCTGGGGCTCCCCAAGAGCACAGACTGCAAGTGCAGCAGCTTCCTGGGACTCAGGAC AGCCATGCTCGACTTCAGAANCTTGGAAATGAAATGAGCACCTCCTCCTCTGTAGTTTCTTCTTTCGTTTTGTCACTTGGATATTGGTTAGCTTTTCTTCTAGGTGAAAACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAACATCTCCTCTGCTGCTCTTGCTGCTCCATTTTGTCTCTGTTGTAATTACCATATATTGACTAATCATGACAAATAATACTTGATGCTAAGTAAGTAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU162826             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                AGCTTCCTGGGACTCAGGACNAGCCATGCTCGACTTCAGAAGCTTGGAAATGAAATGAGCACCTCCTCCTCTGTAGTTTCTTCTTNCGTTTTGTCACTTGGATATTGGTTAGCTTTTCTTCTAGGTGAAAACACACAGAGAGAGAGAGATTNAGAGAGAGAGAGAGAGATAACATCTCCTCTGCTGCTCTTGCTGCTCCATTTTGTCTCTGTTGTAATTACCATATATTGACTAATCATGACAAATAATACTTGATGCTAAGTAA  AAAAAAAAAAAAAAAAAAAAAA]




>consensus_14040#0
GCAGCAGCAGCAGCAGCAACTTCCACTGAAACAACCCACCGAGGCAGCAGAAGAAAGGAA
AGAATCAAGAAAGCTTCATCGTCTTCATGGGGAGGTCACCGTGCTGCGAGAAGGCACACA
CCAACAAGGGAGCATGGACCAAGGAGGAAGATGACCGGCTCATTGCCTACATCAAGGCGC
ACGGCGAAGGTTGCTGGCGATCGCTGCCCAAGGCCGCCGGCCTCCTCCGCTGTGGCAAGA
GCTGCCGCCTCCGGTGGATCAACTACCTCCGGCCTGACCTCAAGCGCGGCAACTTCACCG
AGGAGGAGGATGAGCTGATCATCAAGCTTCACAGCCTTTTAGGCAACAAATGGTCTCTGA
TAGCCGGGAGGTTGCCAGGAAGAACGGACAACGAGATCAAGAACTACTGGAACACGCACA
TCAGGAGGAAGCTGCTGAGCCGTGGCATCGACCCGGTGACACACCGGCCGATCAACGACA
GCGCGTCCAACATCACCATATCATTCGAGGCGGCCGCGGCGGCGGCGAGGGACGACAAGG
CCGCCGTGTTCCGGCGAGAGGACCATCCTCATCAGCCGAAGGCGGTGACAGTGGCACAGG
AGCAGCAGGCAGCCGCCGATTGGGGCCATGGGAAGCCACTCAAGTGCCCTGACCTCAATC
TGGACCTCTGCATCAGCCTCCCTTCCCAAGAAGAGCCCATGATGATGAAGCCGGTGAAGA
GGGAGACCGGCGTCTGCTTCAGCTGCAGCCTGGGGCTCCCCAAGAGCACAGACTGCAAGT
GCAGCAGCTTCCTGGGACTCAGGACAGCCATGCTCGACTTCAGAAGCTTGGAAATGAAAT
GAGCACCTCCTCCTCTGTAGTTTCTTCTTTCGTTTTGTCACTTGGATATTGGTTAGCTTT
TCTTCTAGGTGAAAACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAACATC
TCCTCTGCTGCTCTTGCTGCTCCATTTTGTCTCTGTTGTAATTACCATATATTGACTAAT
CATGACAAATAATACTTGATGCTAAGTAAGTAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_14040#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 515
fasta sequence

                              [GGGAGAGGCCCCTCCTCATCAGCCGAAGGCGGTGACAGTGGCACAGGAGCAGCACACACCCCCCGATTGGCCCCATGGGAACCCCCTCAAGTCCCGTGACCTCAATGTGGACTTTTGCATCAGCCTCCTTTCCCAAGAAGAGCCCATGATGATGAACCCGGTGAAGAGGGAGACCGGTGTCTGCTTCAGGCGCAGCCTGGGGCTCCCCAAGAGCACAGCCCGCAAGTGCAGCAGTTTCGTGGGTCTCAGCACACCCACGCTCGATCTCAGAAGTTTGGAAAAGAAAAGAGCCCCTCCTCCTCTGTAGTTTTTTTTTTCGTTGTGTCACTGGGATATGGGTGAGCTTTTTTTGTGGGGGAACCCCCACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAACATCTCCTCTGCTGCTCTTGCTGCTCCATTTTGTCTCTGTTGTAATTACCATATATTGCCTAATCATGACAAATAATACTTGATGCTAAGTAAGTACTTAAAAAAAAAGGGA]

[-] EMBL CB679301             [GGGAGAGGCCCCTCCTCATCAGCCGAAGGCGGTGACAGTGGCACAGGAGCAGCACACACCCCCCGATTGGCCCCATGGGAACCCCCTCAAGTCCCGTGACCTCAATGTGGACTTTTGCATCAGCCTCCTTTCCCAAGAAGAGCCCATGATGATGAACCCGGTGAAGAGGGAGACCGGTGTCTGCTTCAGGCGCAGCCTGGGGCTCCCCAAGAGCACAGCCCGCAAGTGCAGCAGTTTCGTGGGTCTCAGCACACCCACGCTCGATCTCAGAAGTTTGGAAAAGAAAAGAGCCCCTCCTCCTCTGTAGTTTTTTTTTTCGTTGTGTCACTGGGATATGGGTGAGCTTTTTTTGTGGGGGAACCCCCACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAACATCTCCTCTGCTGCTCTTGCTGCTCCATTTTGTCTCTGTTGTAATTACCATATATTGCCTAATCATGACAAATAATACTTGATGCTAAGTAAGTACTTAAAAAAAAAGGGA]




>consensus_14040#1
GGGAGAGGCCCCTCCTCATCAGCCGAAGGCGGTGACAGTGGCACAGGAGCAGCACACACC
CCCCGATTGGCCCCATGGGAACCCCCTCAAGTCCCGTGACCTCAATGTGGACTTTTGCAT
CAGCCTCCTTTCCCAAGAAGAGCCCATGATGATGAACCCGGTGAAGAGGGAGACCGGTGT
CTGCTTCAGGCGCAGCCTGGGGCTCCCCAAGAGCACAGCCCGCAAGTGCAGCAGTTTCGT
GGGTCTCAGCACACCCACGCTCGATCTCAGAAGTTTGGAAAAGAAAAGAGCCCCTCCTCC
TCTGTAGTTTTTTTTTTCGTTGTGTCACTGGGATATGGGTGAGCTTTTTTTGTGGGGGAA
CCCCCACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAACATCTCCTCTGCTGCTC
TTGCTGCTCCATTTTGTCTCTGTTGTAATTACCATATATTGCCTAATCATGACAAATAAT
ACTTGATGCTAAGTAAGTACTTAAAAAAAAAGGGA

consensusID : consensus_14040#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 429
fasta sequence

                              [GGCCATGGGAAGCCACTCAAGTGCCTTGACCTCAATCTGGACCTCTGCATCCAGCCTCCCTTCCCAAGAAGAGCCCATGATGATGAAGCCGGTGAAGAGGGAGACCGGCGTCTGCTTCAGCTGCAGCCTGGGGCTCCCCAAGAGCACAGACTGCAAGTGCAGCAGCTTCCTGGGACTCAGGACAGCCATGCTCGACTTCAGAAGCTTGGAAATGAAATGAGCACCTCCTCCTCTGTAGTTTCTTCTTTCGTTTTGTCACTTGGATATTGGTTAGCTTTTCTTCTAGGTGAAAACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAACATCTCCTCTGCTGCTCTTGCTGCTCCATTTTGTCTCTGTTGTAATTACCATATATTGACTAAACATGACCATCACTCGTTTGTCGTGAAGTCAA]

[+] EMBL C99483               [GGCCATGGGAAGCCACTCAAGTGCCTTGACCTCAATCTGGACCTCTGCATCCAGCCTCCCTTCCCAAGAAGAGCCCATGATGATGAAGCCGGTGAAGAGGGAGACCGGCGTCTGCTTCAGCTGCAGCCTGGGGCTCCCCAAGAGCACAGACTGCAAGTGCAGCAGCTTCCTGGGACTCAGGACAGCCATGCTCGACTTCAGAAGCTTGGAAATGAAATGAGCACCTCCTCCTCTGTAGTTTCTTCTTTCGTTTTGTCACTTGGATATTGGTTAGCTTTTCTTCTAGGTGAAAACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAACATCTCCTCTGCTGCTCTTGCTGCTCCATTTTGTCTCTGTTGTAATTACCATATATTGACTAAACATGACCATCACTCGTTTGTCGTGAAGTCAA]




>consensus_14040#2
GGCCATGGGAAGCCACTCAAGTGCCTTGACCTCAATCTGGACCTCTGCATCCAGCCTCCC
TTCCCAAGAAGAGCCCATGATGATGAAGCCGGTGAAGAGGGAGACCGGCGTCTGCTTCAG
CTGCAGCCTGGGGCTCCCCAAGAGCACAGACTGCAAGTGCAGCAGCTTCCTGGGACTCAG
GACAGCCATGCTCGACTTCAGAAGCTTGGAAATGAAATGAGCACCTCCTCCTCTGTAGTT
TCTTCTTTCGTTTTGTCACTTGGATATTGGTTAGCTTTTCTTCTAGGTGAAAACACACAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAACATCTCCTCTGCTGCTCTTGCTGCTC
CATTTTGTCTCTGTTGTAATTACCATATATTGACTAAACATGACCATCACTCGTTTGTCG
TGAAGTCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14040#0      GCAGCAGCAGCAGCAGCAACTTCCACTGAAACAACCCACCGAGGCAGCAGAAGAAAGGAA 60
consensus_14040#2      ------------------------------------------------------------
consensus_14040#1      ------------------------------------------------------------
                                                                                   

consensus_14040#0      AGAATCAAGAAAGCTTCATCGTCTTCATGGGGAGGTCACCGTGCTGCGAGAAGGCACACA 120
consensus_14040#2      ------------------------------------------------------------
consensus_14040#1      ------------------------------------------------------------
                                                                                   

consensus_14040#0      CCAACAAGGGAGCATGGACCAAGGAGGAAGATGACCGGCTCATTGCCTACATCAAGGCGC 180
consensus_14040#2      ------------------------------------------------------------
consensus_14040#1      ------------------------------------------------------------
                                                                                   

consensus_14040#0      ACGGCGAAGGTTGCTGGCGATCGCTGCCCAAGGCCGCCGGCCTCCTCCGCTGTGGCAAGA 240
consensus_14040#2      ------------------------------------------------------------
consensus_14040#1      ------------------------------------------------------------
                                                                                   

consensus_14040#0      GCTGCCGCCTCCGGTGGATCAACTACCTCCGGCCTGACCTCAAGCGCGGCAACTTCACCG 300
consensus_14040#2      ------------------------------------------------------------
consensus_14040#1      ------------------------------------------------------------
                                                                                   

consensus_14040#0      AGGAGGAGGATGAGCTGATCATCAAGCTTCACAGCCTTTTAGGCAACAAATGGTCTCTGA 360
consensus_14040#2      ------------------------------------------------------------
consensus_14040#1      ------------------------------------------------------------
                                                                                   

consensus_14040#0      TAGCCGGGAGGTTGCCAGGAAGAACGGACAACGAGATCAAGAACTACTGGAACACGCACA 420
consensus_14040#2      ------------------------------------------------------------
consensus_14040#1      ------------------------------------------------------------
                                                                                   

consensus_14040#0      TCAGGAGGAAGCTGCTGAGCCGTGGCATCGACCCGGTGACACACCGGCCGATCAACGACA 480
consensus_14040#2      ------------------------------------------------------------
consensus_14040#1      ------------------------------------------------------------
                                                                                   

consensus_14040#0      GCGCGTCCAACATCACCATATCATTCGAGGCGGCCGCGGCGGCGGCGAGGGACGACAAGG 540
consensus_14040#2      ------------------------------------------------------------
consensus_14040#1      ------------------------------------------------------------
                                                                                   

consensus_14040#0      CCGCCGTGTTCCGGCGAGAGGACCATCCTCATCAGCCGAAGGCGGTGACAGTGGCACAGG 600
consensus_14040#2      ------------------------------------------------------------
consensus_14040#1      -------------GGGAGAGGCCCCTCCTCATCAGCCGAAGGCGGTGACAGTGGCACAGG 47
                                                                                   

consensus_14040#0      AGCAGCAGGCAGCCGCCGATTGGGGCCATGGGAAGCCACTCAAGTGCCCTGACCTCAATC 660
consensus_14040#2      -----------------------GGCCATGGGAAGCCACTCAAGTGCCTTGACCTCAATC 37
consensus_14040#1      AGCAGCACACACCCCCCGATTGGCCCCATGGGAACCCCCTCAAGTCCCGTGACCTCAATG 107
                                                ********* ** ******* ** ********** 

consensus_14040#0      TGGACCTCTGCATC-AGCCTCCCTTCCCAAGAAGAGCCCATGATGATGAAGCCGGTGAAG 719
consensus_14040#2      TGGACCTCTGCATCCAGCCTCCCTTCCCAAGAAGAGCCCATGATGATGAAGCCGGTGAAG 97
consensus_14040#1      TGGACTTTTGCATC-AGCCTCCTTTCCCAAGAAGAGCCCATGATGATGAACCCGGTGAAG 166
                       ***** * ****** ******* *************************** *********

consensus_14040#0      AGGGAGACCGGCGTCTGCTTCAGCTGCAGCCTGGGGCTCCCCAAGAGCACAGACTGCAAG 779
consensus_14040#2      AGGGAGACCGGCGTCTGCTTCAGCTGCAGCCTGGGGCTCCCCAAGAGCACAGACTGCAAG 157
consensus_14040#1      AGGGAGACCGGTGTCTGCTTCAGGCGCAGCCTGGGGCTCCCCAAGAGCACAGCCCGCAAG 226
                       *********** ***********  *************************** * *****

consensus_14040#0      TGCAGCAGCTTCCTGGGACTCAGGACAGCCATGCTCGACTTCAGAAGCTTGGAAATGAAA 839
consensus_14040#2      TGCAGCAGCTTCCTGGGACTCAGGACAGCCATGCTCGACTTCAGAAGCTTGGAAATGAAA 217
consensus_14040#1      TGCAGCAGTTTCGTGGGTCTCAGCACACCCACGCTCGATCTCAGAAGTTTGGAAAAGAAA 286
                       ******** *** **** ***** *** *** ******  ******* ******* ****

consensus_14040#0      TGAGCACCTCCTCCTCTGTAGTTTCTTCTTTCGTTTTGTCACTTGGATATTGGTTAGCTT 899
consensus_14040#2      TGAGCACCTCCTCCTCTGTAGTTTCTTCTTTCGTTTTGTCACTTGGATATTGGTTAGCTT 277
consensus_14040#1      AGAGCCCCTCCTCCTCTGTAGTTTTTTTTTTCGTTGTGTCACTGGGATATGGGTGAGCTT 346
                        **** ****************** ** ******* ******* ****** *** *****

consensus_14040#0      TTCTTCTAGGTGAAAACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAACAT 959
consensus_14040#2      TTCTTCTAGGTGAAAACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAACAT 337
consensus_14040#1      TTTTTGTGGGGGAACCCCCACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAACAT 406
                       ** ** * ** ***  * ******************************************

consensus_14040#0      CTCCTCTGCTGCTCTTGCTGCTCCATTTTGTCTCTGTTGTAATTACCATATATTGACTAA 1019
consensus_14040#2      CTCCTCTGCTGCTCTTGCTGCTCCATTTTGTCTCTGTTGTAATTACCATATATTGACTAA 397
consensus_14040#1      CTCCTCTGCTGCTCTTGCTGCTCCATTTTGTCTCTGTTGTAATTACCATATATTGCCTAA 466
                       ******************************************************* ****

consensus_14040#0      TCATGACAAATAAT-ACTTGATGCTAAGTAAGTAAAAAAAAAAAAAAAAAAAAAA 1073
consensus_14040#2      ACATGACCATCACTCGTTTGTCGTGAAGTCAA----------------------- 429
consensus_14040#1      TCATGACAAATAAT-ACTTGATGCTAAGTAAGTACTTAAAAAAAAAGGGA----- 515
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