cluster # 1405

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Oryza sativa
cluster # 1405 cluster # 1405 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1405#0 length = 433 sequences # 1

consensus_1405#1 length = 280 sequences # 1

consensusID : consensus_1405#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 433
fasta sequence

                              [GCGAGTGACGCCCGTCCCATGGTGCTCCCTGCCCGGCGCTTTCACCNTCAGCATCGAGCGCAACTACAAGCCCAAGTTCGAGTACCTCGTCGCCGAGATGGCGCGGCGTCCACGTACATCATAGGCGTTCCCCCAGTACTTCACCGTTCAGCCTCGACAACCGGATCGCNCCGCGCCACCCGCGCCACNCGCCAGACGCCGGCAGTCTCGCTGCCGCTGCCAGGACATGCTCAAGGCCACCGACGAAGAGTTCATGGAGATGCTCGACAAGGAGATCGAGCTCGCAGAACCCGCAGCTTAATTAGCCAGAGTTTTAATTANCGGCGAGTGTACATCATTTGATCATGGTAGAATTAAGCTGGATTAGTTGCATGATTTGTACATAACTATTGACATTATTATTTGGTGTCACCCCTTGGTGACTCGTACTAAA]

[+] EMBL BM419071             [GCGAGTGACGCCCGTCCCATGGTGCTCCCTGCCCGGCGCTTTCACCNTCAGCATCGAGCGCAACTACAAGCCCAAGTTCGAGTACCTCGTCGCCGAGATGGCGCGGCGTCCACGTACATCATAGGCGTTCCCCCAGTACTTCACCGTTCAGCCTCGACAACCGGATCGCNCCGCGCCACCCGCGCCACNCGCCAGACGCCGGCAGTCTCGCTGCCGCTGCCAGGACATGCTCAAGGCCACCGACGAAGAGTTCATGGAGATGCTCGACAAGGAGATCGAGCTCGCAGAACCCGCAGCTTAATTAGCCAGAGTTTTAATTANCGGCGAGTGTACATCATTTGATCATGGTAGAATTAAGCTGGATTAGTTGCATGATTTGTACATAACTATTGACATTATTATTTGGTGTCACCCCTTGGTGACTCGTACTAAA]




>consensus_1405#0
GCGAGTGACGCCCGTCCCATGGTGCTCCCTGCCCGGCGCTTTCACCNTCAGCATCGAGCG
CAACTACAAGCCCAAGTTCGAGTACCTCGTCGCCGAGATGGCGCGGCGTCCACGTACATC
ATAGGCGTTCCCCCAGTACTTCACCGTTCAGCCTCGACAACCGGATCGCNCCGCGCCACC
CGCGCCACNCGCCAGACGCCGGCAGTCTCGCTGCCGCTGCCAGGACATGCTCAAGGCCAC
CGACGAAGAGTTCATGGAGATGCTCGACAAGGAGATCGAGCTCGCAGAACCCGCAGCTTA
ATTAGCCAGAGTTTTAATTANCGGCGAGTGTACATCATTTGATCATGGTAGAATTAAGCT
GGATTAGTTGCATGATTTGTACATAACTATTGACATTATTATTTGGTGTCACCCCTTGGT
GACTCGTACTAAA

consensusID : consensus_1405#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 280
fasta sequence

                              [GCCGCCGCCTGACGCCGGCGGTTTCGCTGCCGCTGCCGGACAATGNTCAAGGCCACCGACGAAGAGTTCATGGAGATGCTCGACAAGGAGATCGAGCTGCAGAAGCAGGCNAGCTTAATTAGCCAGAGTTTTAATTACGGCGAGTGTACATGCATTTGATCATGGTAGAATTAAGCTGGATTAGTTGCATGATTTGTACAATAACTGATTGACATNTATTATTTGGTGTCACCGTTGGTGACTCGTACTAAAATATGGNACCATTTTCTCCCCAAAAAAA]

[+] EMBL BQ906823             [GCCGCCGCCTGACGCCGGCGGTTTCGCTGCCGCTGCCGGACAATGNTCAAGGCCACCGACGAAGAGTTCATGGAGATGCTCGACAAGGAGATCGAGCTGCAGAAGCAGGCNAGCTTAATTAGCCAGAGTTTTAATTACGGCGAGTGTACATGCATTTGATCATGGTAGAATTAAGCTGGATTAGTTGCATGATTTGTACAATAACTGATTGACATNTATTATTTGGTGTCACCGTTGGTGACTCGTACTAAAATATGGNACCATTTTCTCCCCAAAAAAA]




>consensus_1405#1
GCCGCCGCCTGACGCCGGCGGTTTCGCTGCCGCTGCCGGACAATGNTCAAGGCCACCGAC
GAAGAGTTCATGGAGATGCTCGACAAGGAGATCGAGCTGCAGAAGCAGGCNAGCTTAATT
AGCCAGAGTTTTAATTACGGCGAGTGTACATGCATTTGATCATGGTAGAATTAAGCTGGA
TTAGTTGCATGATTTGTACAATAACTGATTGACATNTATTATTTGGTGTCACCGTTGGTG
ACTCGTACTAAAATATGGNACCATTTTCTCCCCAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1405#0      GCGAGTGACGCCCGTCCCATGGTGCTCCCTGCCCGGCGCTTTCACCNTCAGCATCGAGCG 60
consensus_1405#1      ------------------------------------------------------------
                                                                                  

consensus_1405#0      CAACTACAAGCCCAAGTTCGAGTACCTCGTCGCCGAGATGGCGCGGCGTCCACGTACATC 120
consensus_1405#1      ------------------------------------------------------------
                                                                                  

consensus_1405#0      ATAGGCGTTCCCCCAGTACTTCACCGTTCAGCCTCGACAACCGGATCGCNCCGCGCCACC 180
consensus_1405#1      ------------------------------------------------------------
                                                                                  

consensus_1405#0      CGCGCCACNCGCCAGACGCCGGCAGTCTCGCTGCCGCTGCCAGGACATGCTCAAGGCCAC 240
consensus_1405#1      ---GCCGCC-GCCTGACGCCGGCGGTTTCGCTGCCGCTGCCGGACAATGNTCAAGGCCAC 56
                         *** *  *** ********* ** ************** *   *** **********

consensus_1405#0      CGACGAAGAGTTCATGGAGATGCTCGACAAGGAGATCGAGCTCGCAGAACCCG--CAGCT 298
consensus_1405#1      CGACGAAGAGTTCATGGAGATGCTCGACAAGGAGATCGAGCT-GCAGAAGCAGGCNAGCT 115
                      ****************************************** ****** * *   ****

consensus_1405#0      TAATTAGCCAGAGTTTTAATTANCGGCGAGTGTACAT-CATTTGATCATGGTAGAATTAA 357
consensus_1405#1      TAATTAGCCAGAGTTTTAATTAC-GGCGAGTGTACATGCATTTGATCATGGTAGAATTAA 174
                      **********************  ************* **********************

consensus_1405#0      GCTGGATTAGTTGCATGATTTGTACA-TAACT-ATTGACATT-ATTATTTGGTGTCACCC 414
consensus_1405#1      GCTGGATTAGTTGCATGATTTGTACAATAACTGATTGACATNTATTATTTGGTGTCACCG 234
                      ************************** ***** ********  **************** 

consensus_1405#0      CTTGGTGACTCGTACTAAA---------------------------- 433
consensus_1405#1      -TTGGTGACTCGTACTAAAATATGGNACCATTTTCTCCCCAAAAAAA 280
                       ******************