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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14050#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1611 fasta sequence
[AGGAAGGCGATGATGAAGAAGTGCCCGTCGGAGCTGCAGCTGGAGGCGTTCATCCGGGAGGAGGCCGGCGCCGGCGACCGCAAGCCCGGCGTGTTATCTCCCGGCGACGGCGCGCGTAAGTCCGGCCTGTTCTCTCCCGGCGACGGCGAGATGTCCGTGTTGGATCAGAGTACACTGGACGGAAGCGGCGGCGGCCACCAGCTGTGGTGGCCGGAGAGCGTCCGTACGCCGCCGCGCGCCGCCGCCGCCTTCTCGGCCACGGCCGACGAGCGGACGCCGGCGTCCATCTCCGATGACCCCAAACCAACCACCTCAGCGAACCACGCGCCTGAAAGCGACTCGGACTCCGATTGCGATTCGCTGTTAGAAGCAGAGAGGAGTCCACGCCTGCGTGGCACGAAATCCACAGAAACAAAGCGAATAAGAAGGATGGTGTCCAACAGGGAGTCCGCTCGACGATCCAGGAGGAGAAAGCAGGCACAGTTATCTGAACTCGAATCACAGGTCGAGCAACTCAAAGGCGAAAACTCATCCCTCTTCAAGCAGCTCACAGAGTCCAGCCAGCAGTTCAATACAGCGGTCACGGACAACAGGATCCTCAAATCGGATGTAGAGGCCTTAAGAGTCAAGGTCAAGATGGCTGAAGACATGGTCGCGAGGGCCGCGATGTCGTGTGGCCTGGGCCAGCTCGGGCTGGCGCCATTGCTCAGCTCCAGGAAGATGTGCCAAGCTTTGGATATGCTCAGTTTACCACGGAACGATGCCTGTGGTTTCAAAGGCTTGAACCTGGGTCGACAGGTTCAGAACTCACCGGTTCAAAGCGCTGCAAGCCTAGAGAGCCTGGACA-ACCGGATATCCAGCGAGGTG-ACCAGCTGCTCGGCTGAT-GTGTGGCC-TTA-AGACA-CTTCA-TCCGTGTTCGAGAGAGCTTGAGATTCTAAGAAGCA-GCCGGTGAGAATCT-GAAAAGGCTAGTT-GTT-CAGTTTCCTATTTTTAGTTTAT--GTTTGAATTCTCTGGCTACTAATGCTCAAAATCTGGGAGAGAATCTAAATCGTTTGGGACAGATAAAAAATTATGCGAGAAGGTGTAGCTGACAGAAACCTTCCC-AAAC-AAATCTCCATC-AGAACCTATATGTAAAGTAATACGGTATCCTCTGTTACTAGGTGCATGTGCATAACTGACAAGCTGCTAAGTACTAGGTACTAC-AGTCTGAGGCAAGTATTTCTGGTGTTTTGGTGCTGAAGAACTATGTTTTAGT-GCGTTTGATCTG-CGGC-AATCAAGGCCATCTGATCGAAATTT-GAT-TGGTATAAATCTGATCGAAATTTGATTGGTATAAGTATAATAG-TTTGATTTTGATCAAATCTAGTCGTCAGCGCCTTTGGTGTATACGCTCTGTAACATCTGTTACGAATTGATCTGTTCAGTATACTTCAACAGTCCTGCATTGGTTCAGTTCTTGGCGTAGCTCTGGTGCTTCTGGTGCGCATAGCATCGGTGTGAAATGTGCCACTTTTCATGGCAGTTGTAATAGTAAACGACTGCAAAATTACGGTGTACTATAATTCCTAAACAAATATGTGACAATTACGATGAAAATTATCACTAAGATGTTATTACCAT]
[+] EMBL AK065941 [AGGAAGGCGATGATGAAGAAGTGCCCGTCGGAGCTGCAGCTGGAGGCGTTCATCCGGGAGGAGGCCGGCGCCGGCGACCGCAAGCCCGGCGTGTTATCTCCCGGCGACGGCGCGCGTAAGTCCGGCCTGTTCTCTCCCGGCGACGGCGAGATGTCCGTGTTGGATCAGAGTACACTGGACGGAAGCGGCGGCGGCCACCAGCTGTGGTGGCCGGAGAGCGTCCGTACGCCGCCGCGCGCCGCCGCCGCCTTCTCGGCCACGGCCGACGAGCGGACGCCGGCGTCCATCTCCGATGACCCCAAACCAACCACCTCAGCGAACCACGCGCCTGAAAGCGACTCGGACTCCGATTGCGATTCGCTGTTAGAAGCAGAGAGGAGTCCACGCCTGCGTGGCACGAAATCCACAGAAACAAAGCGAATAAGAAGGATGGTGTCCAACAGGGAGTCCGCTCGACGATCCAGGAGGAGAAAGCAGGCACAGTTATCTGAACTCGAATCACAGGTCGAGCAACTCAAAGGCGAAAACTCATCCCTCTTCAAGCAGCTCACAGAGTCCAGCCAGCAGTTCAATACAGCGGTCACGGACAACAGGATCCTCAAATCGGATGTAGAGGCCTTAAGAGTCAAGGTCAAGATGGCTGAAGACATGGTCGCGAGGGCCGCGATGTCGTGTGGCCTGGGCCAGCTCGGGCTGGCGCCATTGCTCAGCTCCAGGAAGATGTGCCAAGCTTTGGATATGCTCAGTTTACCACGGAACGATGCCTGTGGTTTCAAAGGCTTGAACCTGGGTCGACAGGTTCAGAACTCACCGGTTCAAAGCGCTGCAAGCCTAGAGAGCCTGGACA ACTGGATATCCAGCGAGGTG ACCAGCTGCTCGGCTGAT GTGTGGCC TTA AGACA CTTCA TCCGTGTTCGAGAGAGCTTGAGATTCTAAGAAGCA GCCGGTGAGAATCT GAAAAGGCTAGTT GTT CAGTTTCCTATTTTTAGTTTAT GTTTGAATTCTCTGGCTACTAATGCTCAAAATCTGGGAAAGAATCTAAATCGTTTGGGACAGATAAAAAATTATGCGAGAAGGTGTAGCTGACAGAAACCTTCCC AAAC AAATCTCCATC AGAACCTATATGTAAAGTAATACGGTATCCTCTGTTACTAGGTGCATGTGCATAACTGACAAGCTGCTAAGTACTAGGTACTAC AGTCTGAGGCAAGTATTTCTGGTGTTTTGGTGCTGAAGAACTATGTTTTAGT GCGTTTGATCTG CGGC AATCAAGGCCATCTGATCGAAATTT GAT TGGTATAAATCTGATCGAAATTTGATTGGTATAAGTATAATAG TTTGATTTTGATCACCTCTAGTCGTCAGCGCCTTTGGTGTATACGCTCTGTAACATCTGTTACGAATTGATCTGTTCAGTATACTTCAACAGTCCTGCATTGGTTCAGTTCTTGGCGTAGCTCTGGTGCTTCTGGTGCGCATAGCATCGGTGTGAAATGTGCCACTTTTCATGGCAGTTGTAATAGTAAACGACTGCAAAATTACGGTGTACTATAATTCCTAAACAAATATGTGACAATTACGATGAAA ]
[+] EMBL AB053474 [ AGGCGATGATGAAGAAGTGCCCGTCGGAGCTGCAGCTGGAGGCGTTCATCCGGGAGGAGGCCGGCGCCGGCGACCGCAAGCCCGGCGTGTTATCTCCCGGCGACGGCGCGCGTAAGTCCGGCCTGTTCTCTCCCGGCGACGGCGAGATGTCCGTGTTGGATCAGAGTACACTGGACGGAAGCGGCGGCGGCCACCAGCTGTGGTGGCCGGAGAGCGTCCGTACGCCGCCGCGCGCCGCCGCCGCCTTCTCGGCCACGGCCGACGAGCGGACGCCGGCGTCCATCTCCGATGACCCCAAACCAACCACCTCAGCGAACCACGCGCCTGAAAGCGACTCGGACTCCGATTGCGATTCGCTGTTAGAAGCAGAGAGGAGTCCACGCCTGCGTGGCACGAAATCCACAGAAACAAAGCGAATAAGAAGGATGGTGTCCAACAGGGAGTCCGCTCGACGATCCAGGAGGAGAAAGCAGGCACAGTTATCTGAACTCGAATCACAGGTCGAGCAACTCAAAGGCGAAAACTCATCCCTCTTCAAGCAGCTCACAGAGTCCAGCCAGCAGTTCAATACAGCGGTCACGGACAACAGGATCCTCAAATCGGATGTAGAGGCCTTAAGAGTCAAGGTCAAGATGGCTGAAGACATGGTCGCGAGGGCCGCGATGTCGTGTGGCCTGGGCCAGCTCGGGCTGGCGCCATTGCTCAGCTCCAGGAAGATGTGCCAAGCTTTGGATATGCTCAGTTTACCACGGAACGATGCCTGTGGTTTCAAAGGCTTGAACCTGGGTCGACAGGTTCAGAACTCACCGGTTCAAAGCGCTGCAAGCCTAGAGAGCCTGGACA ACCGGATATCCAGCGAGGTG ACCAGCTGCTCGGCTGAT GTGTGGCC TTA AGACA CTTCA TCCGTGTTCGAGAGAGCTTGAGATTCTAAGAAGCA GCCGGTGAGAATCT GAAAAGGCTAGTT GTT CAGTTTCCTATTTTTAGTTTAT GTTTGAATTCTCTGGCTACTAATGCTCAAAATCTGGGAGAGAATCTAAATCGTTTGGGACAGATAAAAAATTATGCGAGAAGGTGTAGCTGACAGAAACCTTCCC AAAC AAATCTCCATC AGAACCTATATGTAAAGTAATACGGTATCCTCTGTTACTAGGTGCATGTGCATAACTGACAAGCTGCTAAGTACTAGGTACTAC AGTCTGAGGCAAGTATTTCTGGTGTTTTGGTGCTGAAGAACTATGTTTTAGT GCGTTTGATCTG CGGC AATCAAGGCCATCTGATCGAAATTT GAT TGGTATAAATCTGATCGAAATTTGATTGGTATAAGTATAATAG TTTGATTTTGATCAAAaaaaaaa ]
[+] EMBL CB653494 [ TGATGCACTTTTGACCGTCGGAGCTGCAGCTGGAGGCGTTCATCCGGGAGGAGGCCGGCGCCGGCGACCGCAAGCCCGGCGTGTTATCTCCCGGCGACGGCGCGCGTAAGTCCGGCCTGTTCTCTCCCGGCGACGGCGAGATGTCCGTGTTGGATCAAAGTACACTGGACGGAAGCGGCGGCGGCCACCAGCTGTGGTGGCCGGAGAGCGTCCGTACGCCGCCGCGCGCCGCCGCCGCCTTCTCGGCCACTGCCGACGAGCGGACGCCGGCGTCCATCTCCGATGACCCCAAACCAACCACCTCAGCGAACCACGCGCCTGAAAGCGACTCGGACTCCGATTGCGATTCGCTGTTAGAAGCAGAGAGGAGTCCACGCCTGCGTGGCACGAAATCCACAGAAACAAAGCGAATAATAAGGATGGTGTCCAACAGGGAGTCCGCTCGACGATCCATGAGGAGAAAGCAGGCACAGTTATCTGAACTCGAATCACAGGTCGAGCAACTCAAAGGCGAAAACTCATCCCTCTTCAAGCAGCTCACAGAGTCCAGCCAGCAGTTCAATACAGCGGTCACGGACAACAGGATCCTCAAATCGGATGTAGAGGCCTTAAGAGTCAAGGTCAAGATGGCTGAAGACATGGTCGCGAGGGCCGCGATGTCGTGTGGCCTGGGCCCGCTCAGGCTG ]
[+] EMBL CB668694 [ GAGGCCTGCGCCGGCGACCGCAAGCCCGGCGTGTTATCTCCCGGCGACGGCGCGCGTAAGTCCGGCCTGTTCTCTCCCGGCGACGGCGAGATGTCCGTGTTGGATCAGAGTACACTGGACGGAAGCGGCGGCGGCCACCAGCTGTGGTGGCCGGAGAGCGTCCGTACGCCGCCGCGCGCCGCCGCCGCCTTCTCGGCCACGGCCGACGAGCGGACGCCGGCGTCCATCTCCGATGACCCCAAACCAACCACCTCAGCGAACCACGCGCCTGAAAGCGACTCGGACTCCGATTGCGATTCGCTGTTAGAAGCAGAGAGGAGTCCACGCCTGCGTGGCACGAAATCCACAGAAACAAAGCGAATAAGAAGGATGGTGTCCAACAGGGAGTCCGCTCGACGATCCAGGAGGAGAAAGCAGGCACAGTTATCTGAACTCGAATCACAGGTCGAGCAACTCAAAGGCGAAAACTCATCCCTCTTCAAGCAGCTCACAGAGTCCAGCCAGCAGTTCAATACAGCGGTCACGGACAACAGGATCCTCAAATCGGATGTAGAGGCCTTAAGAGTCAAGGTCAAGATGGCTGAAGACATGGTCGCGAGGGCCGCGATGTCGTGTGGCCTGGGCCAGCTCGGGCTGGCGCCATTGCTCAGCTCCAGGAAGATGTGCCAAGCTTTGGATATGCTCAGTTTACCACGGAACGATGCCTGTGGTTTC AAGGCTTGAACCTGGGTCGACAGGT ]
[-] EMBL CB668695 [ AGCCAGCAGTTCAATACAGCGGTCACGGACAACAGGATCCTCAAATCGGATGTAGAGGCCTTAAGAGTCAAGGTCAAGATGGCTGAAGACATGGTCGCGAGGGCCGCGATGTCGTGTGGCCTGGGCCAGCTCGGGCTGGCGCCATTGCTCAGCTCCAGGAAGATGTGCCAAGCTTTGGATATGCTCAGTTTACCACGGAACGATGCCTGTGGTTTCAAAGGCTTGAACCTGGGTCGACAGGTTCAGAACTCACCGGTTCAAAGCGCTGCAAGCCTAGAGAGCCTGGACA ACCGGATATCCAGCGAGGTG ACCAGCTGCTCGGCTGAT GTGTGGCC TTA AGACA CTTCA TCCGTGTTCGAGAGAGCTTGAGATTCTAAGAAGCA GCCGGTGAGAATCT GAAAAGGCTAGTT GTT CAGTTTCCTATTTTTAGTTTAT GTTTGAATTCTCTGGCTACTAATGCTCAAAATCTGGGAGAGAATCTAAATCGTTTGGGACAGATAAAAAATTATGCGAGAAGGTGTAGCTGACAGAAACCTTCCC AAAC AAATCTCCATC AGAACCTATATGTAAAGTAATACGGTATCCTCTGTTACTAGGTGCATGTGCATAACTGACAAGCTGCTAAGTACTAGGTACTAC AGTCTGAGGCAAGTATTTCTGGTGTTTTGGTGCTGAAGAACTATGTTTTAGT GCGTTTGATCTG CGGC AATCAAGGCCATCTGATCGAAATTT GAT GGGTATAAATCTGATCGAAATTTGATTGGTAAAAAAAAAAAAG a ]
[+] EMBL BM037784 [ ATCGGATGTAGA GCCTTAAGAGTCAA GTCAAGAT GCTGAAGACATGGTCGCGAGGCCCGCGAT TCGTGTGGCCT GGCCAGCTC GGCTGGCGCCATTGCTCAGCTCCAGGAAGATGTGCCAAGCTTTGGATATGCTCAGTTTACCACGGAACGATGCCTGTGGTTTCAAAGGCTTGAACCTGGGTCGACAGGTTCAGAACTCACCGGTTCAAAGCGCTGCAAGCCTAGAGAGCCTGGACA ACCGGATATCCAGCGAGGTG ACCAGCTGCTCGGCTGAT GTGT GCC TTA AGACA CTTCA TCCGTGTTCGAGAGAGCTTGAGATTCTAAGAAGCA GCCGGTGAGAATCT GAAAAGGCTAGTT GTT CAGTTTCCTATTTTTAGTTTATNCNCTTGAATTCTCTGGCTACTAATGCTCAAAATCTGGGAGAGAATCTAAATCGTTTGGGACAGATAAAAAATTATGCGAGAAGGTGTAGCTGACAGAAACCTTCCC AAC AATCTCCATC AGAACCTATATGTAAAGTAATACGGTATCCTCTGTT ]
[+] EMBL BI812234 [ TGCAAGCCTAGAGAGCCTGGACACACCGGATATCCAGCGAGGTG ACCAGCTGCTC GCTGATGGTGT GCC TTA AGACA CTTCA TCCGTGTTCAAGAGAGCTTGAGATTCTAAGAAGCA GCCGGTGAGAATCT GAAAAGGCTAGTT ATT CAGTTTCCTATTTTTAGTTTAT GTTTGGATTCTCTGGCTACTAATGCTCGAAATCTGGGAGAGAATCTAAATCGTTTGGGACAGATAAAAAATTATGCGAGAAGGTGTAGCTGACAGAAACCTTCCC AAC AATCTCCATC AGAACCTATATGTAAAGTAATACGGTATCCTCTGTTACTAGGTGCATGTGCATAACTGACAAGCTGCTAAGTACTAGGTACTAC AGTCTGAGGCAAGTATTTCTGGTGTTTTGGTGCTGAAGAACTATGTTTTAGT GCGTTTGATCTG CGGC AATCAAGGCCATCTGATCGAAATTT GAT TGGTATAAATCTGATCGAAATTTGATTGGTATAAaaaa ]
[+] EMBL BQ908978 [ ccnTAGAGAGCCTGGACC ACCGGATATCCAGCGAGGTGCACCAGCTGCTC GCTGAT GTGT GCC TTA AGACA CTTCA TCCGTGTTCAAGAGAGCTTGAGATTCTAAGAAGCA GCCGGTGAGAATCT GAAAAGGCTAGTT ATT CAGTTTCCTATTTTTAGTTTAT GTTTGGATTCTCTGGCTACTAATGCTCAAAATCTGGGAGAGAATCTAAATCGTTTGGGACAGATAAAAAATTATGCGAGAAGGTGTAGCTGACAGAAACCTTCCC AAC AAATCTCCATC AGAACCTATATGTAAAGTAATACGGTATCCTCTGTTACTAGGTGCATGTGCATAACTGACAAGCTGCTAAGTACTAGGTACTAC AGTCTGAGGCAAGTATTTCTGGTGTTTTGGTGCTGAAGAACTATGTTTTAGT GCGTTTGATCTG CGGC ATCAAGGCCATCTGATCGAAATTT GAT TGGTATAAATCTGATCGAAATTTGATTGGTATAAGTATAATAGCTTTGATTTTGATCAAAaaaaaaa ]
[+] EMBL BM038854 [ GAGAGCCTGGACA ACCGGATATCCAGCGAGGTG ACCAGCTGCTCGGCTGATGGTGTGGCC TTA AGACA CTTCA TCCGTGTTCAAGAGAGCTTGAGATTCTAAGAA CACGCCGGTGAGAATCT GAAAAGGCTAGTT ATT CAGTTTCCTATTTTTAGTTTAT GTTTGGATTCTCTGGCTACTAATGCTCCAAATCTGGGAGAGAATCTAAATCGTTTGGGACAGATAAAAAATTATGCGAGAAGGTGTAGCTGACAGAAACCTTCCC CAAC AATCTCCATC AGAACCTATATGTAAAGTAATACGGTATCCTCTGTTACTAGGTGCATGTGCATAACTGACCAGCTGCTAAGTACTAGGTACTAC AGTCTGAGCCAAGTATTTCTGGTGTTTTGGTGCTGAAGAACTATGTTTTAGTGGCGTTTGATCTGCCGCC TATCAA GCCATCTGATCGAAATTTGGATGTGGTATAAATCTGATCGAAATTTGATTGGTATNCGTATAATA TTGGATTTGGACCAAA ]
[-] EMBL CB653495 [ ACA ACCGGATATCCAGCGAGGTG ACCAGCTGCTCGGCTGAT GTGTGGCC TTA AGACA CTTCA TCCGTGTTCGAGAGAGCTTGAGATTCTAAGAAGCA GCCGGTGAGAATCT GAAAAGGCTAGTT GTT CAGTTTCCTATTTTTAGTTTAT GTTTGAATTCTCTGGCTACTAATGCTCAAAATCTGGGAGAGAATCTAAATCGTTTGGGACAGATAAAAAATTATGCGAGAAGGTGTAGCTGACAGAAACCTTCCC AAAC AAATCTCCATC AGAACCTATATGTAAAGTAATACGGTATCCTCTGTTACTAGGTGCATGTGCATAACTGACAAGCTGCTAAGTACTAGGTACTAC AGTCTGAGGCAAGTATTTCTGGTGTTTTGGTGCTGAAGAACTATGTTTTAGT GCGTTTGATCTG CGGC AATCAAGGCCATCTGATCGAAATTT GAT TGGTATAAATCTGATCGAAATTTGATTGGTATAAGTATAATAG TTTGATTTTGATCACCTCTAGTCGTCAGCGCCTTTGGTGTATACGCTCTGTAACATCTGTTACGAATTGATCTGTTCAGTATACTTCAACAGTCCTGCATTGGTTCAGTTCTTGGCGTAGCTCTGGTGCTTCTGGTGCGCATAGCATCGGTGTGAAATGTGCCACTTTTCATGGCAGTTGTAATAGTAAACGACTGCAAAATTACGGTGTACTATAATTCCTAAACAAATATGTGACAATTAGGATGAAAATTATCACTAAGATGTTATTACCAT]
[+] EMBL BI804052 [ AGCTGCTCGGCTGAT GTGGGCCCTTTAGAGACACCTTCACTCCGTGTTCGAGAGAGCTTGAGATTCTAAGAAGCA CCCGGTGAGAATCTGGAAAAGGCTAGTTAATTCCAGTTTCCTATTTTTAGTTTAT TTTGGATTCTCGGGCTACTAATGCTTAAAATCTGGGAGAGAATCTAAATCGTTTGGGACAGATAAAAAATTATGCGAGAAGGTGTAGCTGACAGAAACCTTCCCAAAACAAAATCTCCATCAAGAACCTATATGTAAAGTAATCCGGTATCCTCTGTTACTAGGTGCATGTGCATAACTGACAAGCTGCTAAGTACTAGGTACTACAAGTCTGAGCCAAGTATTTCTGGTGTTTTGGTGCTGAAGAACTATGTTTTAGT GCGTTTGATCTC CGCCAAATCAAGCCCATCTGATCGAAATTT GAT TGGTATAAATCTGATCGAAAaaaaaaa ]
consensusID : consensus_14050#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1381 fasta sequence
[AGAAGTGCCCGTCGGAGCTGCAGCTGGAGGCGTTCATCCGGGAGGAGGCCGGCGCCGGCGACCGCAAGCCCGGCGTGTTATCTCCCGGCGACGGCGCGCGTAAGTCCGGCCTGTTCTCTCCCGGCGACGGCGAGATGTCCGTGTTGGATCAGAGTACACTGGACGGAAGCGGCGGCGGCCACCAGCTGTGGTGGCCGGAGAGCGTCCGTACGCCGCCGCGCGCCGCCGCCGCCTTCTCGGCCACGGCCGACGAGCGGACGCCGGCGTCCATCTCCGATGACCCCAAACCAACCACCTCAGCGAACCACGCGCCTGAAAGCGACTCGGACTCCGATTGCGATTCGCTGTTAGAAGCAGAGAGGAGTCCACGCCTGCGTGGCACGAAATCCACAGAAACAAAGCGAATAAGAAGGATGGTGTCCAACAGGGAGTCCGCTCGACGATCCAGGAGGAGAAAGCAGGCACAGTTATCTGAACTCGAATCACAGGTCGAGCAACTCAAAGGCGAAAACTCATCCCTCTTCAAGCAGCTCACAGAGTCCAGCCAGCAGTTCAATACAGCGGTCACGGACAACAGGATCCTCAAATCGGATGTAGAGGCCTTAAGAGTCAAGGTAATTAGAAACCAAACTCTCCTTCAGCCACCAATTATCGGCGCATTTAACTTTTCGCCACTTTTAAGATGAGGTAATTAAGAATTTACCACCCATAGTCTATGACAACATATGGGTCTTTATCACTTTATGTGTCTATGACATGTGAGTCCAATTGCAAATTGTCACTCGTAAGAGTGGTAAATAGTTAATTGTTTCTGATGATCGGCTTCCGGCATCTCTCCAAACTTACCAATTCTTGGCTTCGATCCCAGGTCAAGATGGCTGAAGACATGGTCGCGAGGGCCGCGATGTCGTGTGGCCTGGGCCAGCTCGGGCTGGCGCCATTGCTCAGCTCCAGGAAGATGTGCCAAGCTTTGGATATGCTCAGTTTACCACGGAACGATGCCTGTGGTTTCAAAGGCTTGAACCTGGGTCGACAGGTTCAGAACTCACCGGTTCAAAGCGCTGCAAGCCTAGAGAGCCTGGACAACCGGATATCCAGCGAGGTGACCAGCTGCTCGGCTGATGTGTGGCCTTAAGACACTTCATCCGTGTTCGAGAGAGCTTGAGATTCTAAGAAGCAGCCGGTGAGAATCTGAAAAGGCTAGTTGTTCAGTTTCCTATTTTTAGTTTATGTTTGAATTCTCTGGCTACTAATGCTCAAAATCTGGGAGAGAATCTAAATCGTTTGGGACAGATAAAAAATTATGCGAGAAGGTGTAGCTGACAGAAACCTTCCCAAACAAATCTCCATCAGAACCTATATGTAAAGTAATACGGTATCC]
[+] EMBL CB676551 [AGAAGTGCCCGTCGGAGCTGCAGCTGGAGGCGTTCATCCGGGAGGAGGCCGGCGCCGGCGACCGCAAGCCCGGCGTGTTATCTCCCGGCGACGGCGCGCGTAAGTCCGGCCTGTTCTCTCCCGGCGACGGCGAGATGTCCGTGTTGGATCAGAGTACACTGGACGGAAGCGGCGGCGGCCACCAGCTGTGGTGGCCGGAGAGCGTCCGTACGCCGCCGCGCGCCGCCGCCGCCTTCTCGGCCACGGCCGACGAGCGGACGCCGGCGTCCATCTCCGATGACCCCAAACCAACCACCTCAGCGAACCACGCGCCTGAAAGCGACTCGGACTCCGATTGCGATTCGCTGTTAGAAGCAGAGAGGAGTCCACGCCTGCGTGGCACGAAATCCACAGAAACAAAGCGAATAAGAAGGATGGTGTCCAACAGGGAGTCCGCTCGACGATCCAGGAGGAGAAAGCAGGCACAGTTATCTGAACTCGAATCACAGGTCGAGCAACTCAAAGGCGAAAACTCATCCCTCTTCAAGCAGCTCACAGAGTCCAGCCAGCAGTTCAATACAGCGGTCACGGACAACAGGATCCTCAAATCGGATGTAGAGGCCTTAAGAGTCAAGGTAATTAGAAACCAAACTCTCCTTCAGCCACCAATTATCGGCGCATTTAACTTTTCGCCACTTTTAAGATGAGGTAATTAAGAATTTACCACCCATAGTCTATGACAACATATGGGTCTTTATCACTTTATGTGTCTATGACATGTGAGTCCAATTGCAAATTGTCACTCGTAAGAGTGGTAAATAGTTAATTGTTTCTGATGATCGGCTTCCGGCATCTCTCCAAACTTACC ]
[-] EMBL CB676552 [ ATTAGAAACCAAACTCTCCTTCAGCCACCAATTATCGGCGCATTTAACTTTTCGCCACTTTTAAGATGAGGTAATTAAGAATTTACCACCCATAGTCTATGACAACATATGGGTCTTTATCACTTTATGTGTCTATGACATGTGAGTCCAATTGCAAATTGTCACTCGTAAGAGTGGTAAATAGTTAATTGTTTCTGATGATCGGCTTCCGGCATCTCTCCAAACTTACCAATTCTTGGCTTCGATCCCAGGTCAAGATGGCTGAAGACATGGTCGCGAGGGCCGCGATGTCGTGTGGCCTGGGCCAGCTCGGGCTGGCGCCATTGCTCAGCTCCAGGAAGATGTGCCAAGCTTTGGATATGCTCAGTTTACCACGGAACGATGCCTGTGGTTTCAAAGGCTTGAACCTGGGTCGACAGGTTCAGAACTCACCGGTTCAAAGCGCTGCAAGCCTAGAGAGCCTGGACAACCGGATATCCAGCGAGGTGACCAGCTGCTCGGCTGATGTGTGGCCTTAAGACACTTCATCCGTGTTCGAGAGAGCTTGAGATTCTAAGAAGCAGCCGGTGAGAATCTGAAAAGGCTAGTTGTTCAGTTTCCTATTTTTAGTTTATGTTTGAATTCTCTGGCTACTAATGCTCAAAATCTGGGAGAGAATCTAAATCGTTTGGGACAGATAAAAAATTATGCGAGAAGGTGTAGCTGACAGAAACCTTCCCAAACAAATCTCCATCAGAACCTATATGTAAAGTAATACGGTATCC]
consensusID : consensus_14050#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 595 fasta sequence
[GAGTAGAAAACCTTTAAATTAAGCCGCGACGAGCACTGCACGGTGGTCGGAGGAAGGCGATGATGAAGAAGTGCCCGTCGGAGCTGCAGCTGGAGGCGTCCATCTCCGATGACCCCAAACCAACCACCTCAGCGAACCACGCGCCTGAAAGCGACTCGGGCTCCGATTGCGATTCGCTGTTAGAAGCAGAGAGGAGTCCACGCCTGCGTGGCACGAAATCCACAGAAACAAAGCGAATAAGAAGGATGGTGTCCAACAGGGAGTCCGCTCGACGATCCAGGAGGAGAAAGCAGGCACAGTTATCTGAACTCGAATCACAGGTCGAGCAACTCAAAGGCGAAAACTCATCCCTCTTCAAGCAGCTCACAGAGTCCAGCCAGCAGTTCAATACAGCGGTCACGGACAACAGGATCCTCAAATCGGATGTAGAGGCCTTAAGAGTCAAGGTCAAGATGGCTGAAGACATGGTCGCGAGGGCCGCGATGTCGTGTGGCCTGGGCCAGCTCGGGCTGGCGCCATTGCTCAGCTCCAGGAAGATGTGCCAAGCTTTGGATATGCTCAGTTTACCACGGAACGATGCCCTGTGGTTTCAAAG]
[+] EMBL CF334964 [GAGTAGAAAACCTTTAAATTAAGCCGCGACGAGCACTGCACGGTGGTCGGAGGAAGGCGATGATGAAGAAGTGCCCGTCGGAGCTGCAGCTGGAGGCGTCCATCTCCGATGACCCCAAACCAACCACCTCAGCGAACCACGCGCCTGAAAGCGACTCGGGCTCCGATTGCGATTCGCTGTTAGAAGCAGAGAGGAGTCCACGCCTGCGTGGCACGAAATCCACAGAAACAAAGCGAATAAGAAGGATGGTGTCCAACAGGGAGTCCGCTCGACGATCCAGGAGGAGAAAGCAGGCACAGTTATCTGAACTCGAATCACAGGTCGAGCAACTCAAAGGCGAAAACTCATCCCTCTTCAAGCAGCTCACAGAGTCCAGCCAGCAGTTCAATACAGCGGTCACGGACAACAGGATCCTCAAATCGGATGTAGAGGCCTTAAGAGTCAAGGTCAAGATGGCTGAAGACATGGTCGCGAGGGCCGCGATGTCGTGTGGCCTGGGCCAGCTCGGGCTGGCGCCATTGCTCAGCTCCAGGAAGATGTGCCAAGCTTTGGATATGCTCAGTTTACCACGGAACGATGCCCTGTGGTTTCAAAG]
consensusID : consensus_14050#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 224 fasta sequence
[AACTCACCGGTTCAAAGCGCTGCAAGCCTAGAGAGCCTGGACAACCGGATATCAGCGAGGTGACCAGCTGCTCGGCTGATGTGTGGCCTTAAGACACTTCACCCGTGTTCGAGAGAGCTTGAGATTCTAAGAAGCAGCCGGTGAGAATCTGAAAAGGCTAGTTGTAAAGTAATGCTCAATCCGTGTCCGTGTCCGTGTCCGTGTACTTCATCAGTTTCCTATTT]
[+] EMBL AA751441 [AACTCACCGGTTCAAAGCGCTGCAAGCCTAGAGAGCCTGGACAACCGGATATCAGCGAGGTGACCAGCTGCTCGGCTGATGTGTGGCCTTAAGACACTTCACCCGTGTTCGAGAGAGCTTGAGATTCTAAGAAGCAGCCGGTGAGAATCTGAAAAGGCTAGTTGTAAAGTAATGCTCAATCCGTGTCCGTGTCCGTGTCCGTGTACTTCATCAGTTTCCTATTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14050#1 AGAAGTGCCCGTCGGAGCTGCAGCTGGAGGCGTTCATCCGGGAGGAGGCCGGCGCCGGCG 60
consensus_14050#3 ------------------------------------------------------------
consensus_14050#0 ------------------------------------------------------------
consensus_14050#2 ------------------------------------------------------------
consensus_14050#1 ACCGCAAGCCCGGCGTGTTATCTCCCGGCGACGGCGCGCGTAAGTCCGGCCTGTTCTCTC 120
consensus_14050#3 ------------------------------------------------------------
consensus_14050#0 ------------------------------------------------------------
consensus_14050#2 ------------------------------------------------------------
consensus_14050#1 CCGGCGACGGCGAGATGTCCGTGTTGGATCAGAGTACACTGGACGGAAGCGGCGGCGGCC 180
consensus_14050#3 ------------------------------------------------------------
consensus_14050#0 ------------------------------------------------------------
consensus_14050#2 ------------------------------------------------------------
consensus_14050#1 ACCAGCTGTGGTGGCCGGAGAGCGTCCGTACGCCGCCGCGCGCCGCCGCCGCCTTCTCGG 240
consensus_14050#3 ------------------------------------------------------------
consensus_14050#0 -----------------------------------------------------AGGAAGG 7
consensus_14050#2 ------------------------------------------------------------
consensus_14050#1 CCACGGCCGACGAGCGGACGCCGGCGTCCATCTCCGATGACCCCAAACCAACCACCTCAG 300
consensus_14050#3 ------------------------------------------------------------
consensus_14050#0 CGATGATGAAGAAGTGCCCGTCGGAGCTGCAGCTGGAGGCGTTCATCCGGGAGGAGGCCG 67
consensus_14050#2 ------------------------------------------------------------
consensus_14050#1 CGAACCACGCGCCTGAAAGCGACTCGGACTCCGATTGCGATTCGCTGTTAGAAGCAGAGA 360
consensus_14050#3 ------------------------------------------------------------
consensus_14050#0 GCGCCGGCGACCGCAAGCCCGGCGTGTTATCTCCCGGCGACGGCGCGCGTAAGTCCGGCC 127
consensus_14050#2 ------------------------------------------------------------
consensus_14050#1 GGAGTCCACGCCTGCGTGGCACGAAATCCACAGAAACAAAGCGAATAAGAAGGATGGTGT 420
consensus_14050#3 ------------------------------------------------------------
consensus_14050#0 TGTTCTCTCCCGGCGACGGCGAGATGTCCGTGTTGGATCAGAGTACACTGGACGGAAGCG 187
consensus_14050#2 ------------------------------------------------------------
consensus_14050#1 CCAACAGGGAGTCCGCTCGACGATCCAGGAGGAGAAAGCAGGCACAGTTATCTGAACTCG 480
consensus_14050#3 ------------------------------------------------------------
consensus_14050#0 GCGGCGGCCACCAGCTGTGGTGGCCGGAGAGCGTCCGTACGCCGCCGCGCGCCGCCGCCG 247
consensus_14050#2 ------------------------------------------------------------
consensus_14050#1 AATCACAGGTCGAGCAACTCAAAGGCGAAAACTCATCCCTCTTCAAGCAGCTCACAGAGT 540
consensus_14050#3 ------------------------------------------------------------
consensus_14050#0 CCTTCTCGGCCACGGCCGACGAGCGGACGCCGGCGTCCATCTCCGATGACCCCAAACCAA 307
consensus_14050#2 ------------------------------------------------------------
consensus_14050#1 CCAGCCAGCAGTTCAATACAGCGGTCACGGACAACAGGATCCTCAAATCGGATGTAGAGG 600
consensus_14050#3 ------------------------------------------------------------
consensus_14050#0 CCACCTCAGCGAACCACGCGCCTGAAAGCGACTCGGACTCC-----GATTGCGATTCGCT 362
consensus_14050#2 ------------------------------------------------------------
consensus_14050#1 CCTTAAGAGTCAAGGTAATTAGAAACCAAACTCTCCTTCAGCCACCAATTATCGGCGCAT 660
consensus_14050#3 ------------------------------------------------------------
consensus_14050#0 GTTAGAAGCAGAGAGGAGTCCACGCCTGCGTGGCACGAAATCCACAGAAACAAAGCGAAT 422
consensus_14050#2 ------------------------------------------------------------
consensus_14050#1 TTAACTTTTCGCCACTTTTAAGATGAGGTAATTAAGAATTTACCACCCATAGTCTATGAC 720
consensus_14050#3 ------------------------------------------------------------
consensus_14050#0 AAGAAGGATGGTGTCCAACAGGGAGTCCGCTCGACGATCCAGGAGGAGAAAGCAGGCACA 482
consensus_14050#2 ------------------------------------------------------------
consensus_14050#1 AACATATGGGTCTTTATCACTTTATGTGTCTATGACATGTGAGTCCAATTGCAAATTGTC 780
consensus_14050#3 ------------------------------------------------------------
consensus_14050#0 GTTATCTGAACTCGAATCACAGGTCGAGCAACTCAAAGGCGAAAACTCATCCCTCTTCAA 542
consensus_14050#2 -----------GAGTAGAAAACCTTTAAATTAAGCCGCGACGAGCACTGCACGGTGGTCG 49
consensus_14050#1 ACTCGTAAGAGTGGTAAATAGTTAATTGTTTCTGATGATCGGCTTCCGGCATCTCTCCAA 840
consensus_14050#3 ------------------------------------------------------------
consensus_14050#0 GCAGCTCACAGAGTCCAGCCAGCAGTTCAATACAGCGGTCACGGACAACAGGATCCTCAA 602
consensus_14050#2 GAGGAAGGCGATGATGAAGAAGTGCCCGTCGGAGCTGCAGCTGGAGGCGTCCATCTCCGA 109
consensus_14050#1 ACTTACCAATTCTTGGCTTCGATCCCAGGTCAAGATGGCTGAAGACATGGTCGCGAGGGC 900
consensus_14050#3 ------------------------------------------------------------
consensus_14050#0 ATCGGATGTAGAGGCCTTAAGAGTCAAGGTCAAGATGGCTGAAGACATGGTCGCGAGGGC 662
consensus_14050#2 TGACCCCAAACCAACCACCTCAGCGAACCACGCGCCTGAAAGCGACTCGGGCTCCGATTG 169
consensus_14050#1 CGCGATGTCGTGTGGCCTGGGCCAGCTCGGGCTGGCGCCATTGCTCAGCTCCAGGAAGAT 960
consensus_14050#3 ------------------------------------------------------------
consensus_14050#0 CGCGATGTCGTGTGGCCTGGGCCAGCTCGGGCTGGCGCCATTGCTCAGCTCCAGGAAGAT 722
consensus_14050#2 CGATTCGCTGTTAGAAGCAGAGAGGAGTCCACGCCTGCGTGGCACGAAATCCACAGAAAC 229
consensus_14050#1 GTGCCAAGCTTTGGATATGCTCAGTTTACCACGGAACGATGCCTGTGGTTTCAAAGGCTT 1020
consensus_14050#3 ------------------------------------------------------------
consensus_14050#0 GTGCCAAGCTTTGGATATGCTCAGTTTACCACGGAACGATGCCTGTGGTTTCAAAGGCTT 782
consensus_14050#2 AAAGCGAATAAGAAGGATGGTGTCCAACAGGGAGTCCGCTCGACGATCCAGGAGGAGAAA 289
consensus_14050#1 GAACCTGGGTCGACAGGTTCAGAACTCACCGGTTCAAAGCGCTGCAAGCCTAGAGAGCCT 1080
consensus_14050#3 ----------------------AACTCACCGGTTCAAAGCGCTGCAAGCCTAGAGAGCCT 38
consensus_14050#0 GAACCTGGGTCGACAGGTTCAGAACTCACCGGTTCAAAGCGCTGCAAGCCTAGAGAGCCT 842
consensus_14050#2 GCAGGCACAGTTATCTGAACTCGAATCACAGGT-CGAGCAACTCAAAGGCGAAAACTCAT 348
* **** *** * * ** *** * * * * *
consensus_14050#1 GGACAACCGGATATCCAGCGAGGT--GACCAGCTGCTCGGCTGATGTGT----GGCCTTA 1134
consensus_14050#3 GGACAACCGGATATC-AGCGAGGT--GACCAGCTGCTCGGCTGATGTGT----GGCCTTA 91
consensus_14050#0 GGACAACCGGATATCCAGCGAGGT--GACCAGCTGCTCGGCTGATGTGT----GGCCTTA 896
consensus_14050#2 CCCTCTTCAAGCAGCTCACAGAGTCCAGCCAGCAGTTCAATACAGCGGTCACGGACAACA 408
* * * * ** ***** * ** * ** * * *
consensus_14050#1 AGACACTTCATCCGTGTTCGAGAGAGCTTGAGATTCTAAGAAGCAGCCGGTGAGAATCTG 1194
consensus_14050#3 AGACACTTCACCCGTGTTCGAGAGAGCTTGAGATTCTAAGAAGCAGCCGGTGAGAATCTG 151
consensus_14050#0 AGACACTTCATCCGTGTTCGAGAGAGCTTGAGATTCTAAGAAGCAGCCGGTGAGAATCTG 956
consensus_14050#2 GGATCCTCAAATCG-GATGTAGAGGCCTTAAGAGTCAAGGTCAAGATGGCTGAAGACATG 467
** ** * ** * * **** *** *** ** * * * *** * **
consensus_14050#1 A----AAAGGCTA----GTTGTTCAGT--TTCCTATTTTTAGTTTATGTTTGAATTCTCT 1244
consensus_14050#3 A----AAAGGCTA----GTTGTAAAGTAATGCTCAATCCGTGTCCGTGTCCGTGTCCGTG 203
consensus_14050#0 A----AAAGGCTA----GTTGTTCAGT--TTCCTATTTTTAGTTTATGTTTGAATTCTCT 1006
consensus_14050#2 GTCGCGAGGGCCGCGATGTCGTGTGGCCTGGGCCAGCTCGGGCTGGCGCCATTGCTCAGC 527
* *** ** ** * * * * *
consensus_14050#1 GGCTACTAATGCTCAAAATCTGGGAGAGAATCTAAATCGTTTGGGACAGATAAAAAATTA 1304
consensus_14050#3 TACTTCATCAGTTTCCTATTT--------------------------------------- 224
consensus_14050#0 GGCTACTAATGCTCAAAATCTGGGAGAGAATCTAAATCGTTTGGGACAGATAAAAAATTA 1066
consensus_14050#2 TCCAGGAAGATGTGCCAAGCTTTGGATATGCTCAGTTTACCACGGAACGATGCCCTGTGG 587
* * * *
consensus_14050#1 TGCGAGAAGGTGTAGCTGACAGAAACCTTCCCAAACAAATCTCCATCAGAACCTATATGT 1364
consensus_14050#3 ------------------------------------------------------------
consensus_14050#0 TGCGAGAAGGTGTAGCTGACAGAAACCTTCCCAAACAAATCTCCATCAGAACCTATATGT 1126
consensus_14050#2 TTTCAAAG---------------------------------------------------- 595
consensus_14050#1 AAAGTAATACGGTATCC------------------------------------------- 1381
consensus_14050#3 ------------------------------------------------------------
consensus_14050#0 AAAGTAATACGGTATCCTCTGTTACTAGGTGCATGTGCATAACTGACAAGCTGCTAAGTA 1186
consensus_14050#2 ------------------------------------------------------------
consensus_14050#1 ------------------------------------------------------------
consensus_14050#3 ------------------------------------------------------------
consensus_14050#0 CTAGGTACTACAGTCTGAGGCAAGTATTTCTGGTGTTTTGGTGCTGAAGAACTATGTTTT 1246
consensus_14050#2 ------------------------------------------------------------
consensus_14050#1 ------------------------------------------------------------
consensus_14050#3 ------------------------------------------------------------
consensus_14050#0 AGTGCGTTTGATCTGCGGCAATCAAGGCCATCTGATCGAAATTTGATTGGTATAAATCTG 1306
consensus_14050#2 ------------------------------------------------------------
consensus_14050#1 ------------------------------------------------------------
consensus_14050#3 ------------------------------------------------------------
consensus_14050#0 ATCGAAATTTGATTGGTATAAGTATAATAGTTTGATTTTGATCAAATCTAGTCGTCAGCG 1366
consensus_14050#2 ------------------------------------------------------------
consensus_14050#1 ------------------------------------------------------------
consensus_14050#3 ------------------------------------------------------------
consensus_14050#0 CCTTTGGTGTATACGCTCTGTAACATCTGTTACGAATTGATCTGTTCAGTATACTTCAAC 1426
consensus_14050#2 ------------------------------------------------------------
consensus_14050#1 ------------------------------------------------------------
consensus_14050#3 ------------------------------------------------------------
consensus_14050#0 AGTCCTGCATTGGTTCAGTTCTTGGCGTAGCTCTGGTGCTTCTGGTGCGCATAGCATCGG 1486
consensus_14050#2 ------------------------------------------------------------
consensus_14050#1 ------------------------------------------------------------
consensus_14050#3 ------------------------------------------------------------
consensus_14050#0 TGTGAAATGTGCCACTTTTCATGGCAGTTGTAATAGTAAACGACTGCAAAATTACGGTGT 1546
consensus_14050#2 ------------------------------------------------------------
consensus_14050#1 ------------------------------------------------------------
consensus_14050#3 ------------------------------------------------------------
consensus_14050#0 ACTATAATTCCTAAACAAATATGTGACAATTACGATGAAAATTATCACTAAGATGTTATT 1606
consensus_14050#2 ------------------------------------------------------------
consensus_14050#1 -----
consensus_14050#3 -----
consensus_14050#0 ACCAT 1611
consensus_14050#2 -----
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||