cluster # 14052

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Oryza sativa
cluster # 14052 cluster # 14052 Sequences # 15 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_14052#0 length = 1962 sequences # 12

consensus_14052#1 length = 563 sequences # 2
consensus_14052#2 length = 201 sequences # 1

consensusID : consensus_14052#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 1962
fasta sequence

                              [TCGCCTTGCTTGATTTGCCTCGCCTGCCCTTTTTCTCGCGCGGCCGCCTCCGAGATTTCTCCTCCTCCTCCTCCTCCTCGACTCGACTCGACTCACCCCCCACTGAAATCTTCCTCCCACCACCGCGCCGCGACGTCGCACGCCCCCGCGGCCGCCGCCGACGTCGCTGTACCCCCAAACCCTAGCCCCGCTAGCGGGAGCGGTCGAGCACACACGCACGCGCGCGCGCGCGCGCGGAGTTCTCTCTCTCTCCTGTTGACCACCTGCAGATCGCCCGCGCGATGGGATCCAAGGACGGGAGTGGAGCCGCCTCGTCGGGAGGCGGCGGGGGCTTCTTCTCCTCGATCGCCGCCGGCGTGCGCAGCTTGGGCACCGCCGTCCACAAATCTGTCAACGGGTTGGTCGGCTATGAAGGACTTGAAGTTATTAACCCAGATGGAGGCACAG-AAGATGCGGAAGCTGAGGCTTTGAGAGGGCGATGGAAACAAGAGGATCGTGATAGTTATTGG-AAGATGATGCACAAGTACATAGGGGCAGATGTTACATCACTTGTGACACTTCCGGTCATCATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCAGAGTTGATGGAATACTGTGAACTTTTAGACAAAGCAGATGAATGCGAAGACCCGTACATGCGTATGGCATATGCCTCTGCATGGGCTGTATCGGTCTACTTTGCATACCAGCGTACCTGGAAGCCTTTCAATCCCATCCTTGGGGAGACATATGAGATGGTTAACCACCAGGGTATTTCATTTATTGCTGAGCAGGTAAGCCATCATCCTCCGATGGGTGCCGCTCACTGTGAAAATGCACATTTTACATATGACATCACCTCCAAGTTGAAGACCAAATTCTTGGGGAACTCTCTGGAAGTTTATCCACTTGGAAGGACTAGAGTGTCACTTAAGAAGTCCGGTGTCAAGCTGGAATTGGTACCACCACTCACGAAGGTCAACAACTTGATATTTGGGCGTACTTGGGTTGATTCTCCTGGAGAGATGGTATTGACAAACCTGACAACTGGAGACAAAGTTGTGCTTTTATTCCAGCCATGTGGCTGGTTTGGGGCTGGTCGGTACGAGGTGGATGGCTATGTGTATAGTGCAGCTGAAGAACCCAAAATAATGATAACTGGAAAGTGGAACCAGTCCATGAGTTGTCAGCCATGCGATCAAGAAGGCGATCCTCTTCCAGGAACTGAGCTAAAGGAGATATGGAGAGTTGCTCCTACTCCACCAAATGACAAGTACCAGTACACGCACTTCGCGCACAAAATAAACAGCTTCGATACGGCGCCGAAGAAGCTATTGGCATCGGACTCCCGATTGAGGCCTGATAGATATGCCCTCGAGAAGGGTGACATGTCAAAATCAGGTTCAGAAAAGAGCAGGCTTGAAGAGCAACAAAGAGCTGAGAAAAGAACACGAGAGGCCAAGGGGGAGCAATTTACTCCAAGATGGTTTAACAGGACCGATGAAATCGCCCCTACACCCTGGGGCGAGCTGGAAGTGTATGAATACAATGGAAAATACACCGAGCACCGCGCTGCCATTGACAGCTCAAGTGTGGCCGACGACGATACAGACGTCACTTCGATCGAATTCAACCCGTGGCAGTACAGTAGCTCATCTTCCCAATGATTTTCGTA-GGGTCTGAAACTGCACATCCGTATTTTTATTATCCAATATGCTTCCAGGCCTTGCTTTGCACGCTGATTCATCTCAGCAGAGTTTTCGTGCCTTTGTAGTATTATGACCTTCACTTTTTCCCTTCTTCATGCTTCTACTGTTCAGGAAGTGATGGTGTATTCGATGTAGTCCATATACTGTCGTTGTTAATCTAGCGAAAATTACAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTAAAAAAAAAAACCACTGTCTTGCCGTTACGTACCGTAT]

[+] EMBL AK060769             [TCGCCTTGCTTGATTTGCCTCGCCTGCCCTTTTTCTCGCGCGGCCGCCTCCGAGATTTCTCCTCCTCCTCCTCCTCCTCGACTCGACTCGACTCACCCCCCACTGAAATCTTCCTCCCACCACCGCGCCGCGACGTCGCACGCCCCCGCGGCCGCCGCCGACGTCGCTGTACCCCCAAACCCTAGCCCCGCTAGCGGGAGCGGTCGAGCACACACGCACGCGCGCGCGCGCGCGCGGAGTTCTCTCTCTCTCCTGTTGACCACCTGCAGATCGCCCGCGCGATGGGATCCAAGGACGGGAGTGGAGCCGCCTCGTCGGGAGGCGGCGGGGGCTTCTTCTCCTCGATCGCCGCCGGCGTGCGCAGCTTGGGCACCGCCGTCCACAAATCTGTCAACGGGTTGGTCGGCTATGAAGGACTTGAAGTTATTAACCCAGATGGAGGCACAG AAGATGCGGAAGCTGAGGCTTTGAGAGGGCGATGGAAACAAGAGGATCGTGATAGTTATTGG AAGATGATGCACAAGTACATAGGGGCAGATGTTACATCACTTGTGACACTTCCGGTCATCATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCAGAGTTGATGGAATACTGTGAACTTTTAGACAAAGCAGATGAATGCGAAGACCCGTACATGCGTATGGCATATGCCTCTGCATGGGCTGTATCGGTCTACTTTGCATACCAGCGTACCTGGAAGCCTTTCAATCCCATCCTTGGGGAGACATATGAGATGGTTAACCACCAGGGTATTTCATTTATTGCTGAGCAGGTAAGCCATCATCCTCCGATGGGTGCCGCTCACTGTGAAAATGCACATTTTACATATGACATCACCTCCAAGTTGAAGACCAAATTCTTGGGGAACTCTCTGGAAGTTTATCCACTTGGAAGGACTAGAGTGTTACTTAAGAAGTCCGGTGTCAAGCTGGAATTGGTACCACCACTCACGAAGGTCAACAACTTGATATTTGGGCGTACTTGGGTTGATTCTCCTGGAGAGATGGTATTGACAAACCTGACAACTGGAGACAAAGTTGTGCTTTTATTCCAGCCATGTGGCTGGTTTGGGGCTGGTCGGTACGAGGTGGATGGCTATGTGTATAGTGCAGCTGAAGAACCCAAAATAATGATAACTGGAAAGTGGAACCAGTCCATGAGTTGTCAGCCATGCGATCAAGAAGGCGATCCTCTTCCAGGAACTGAGCTAAAGGAGATATGGAGAGTTGCTCCTACTCCACCAAATGACAAGTACCAGTACACGCACTTCGCGCACAAAATAAACAGCTTCGATACGGCGCCGAAGAAGCTATTGGCATCGGACTCCCGATTGAGGCCTGATAGATATGCCCTCGAGAAGGGTGACATGTCAAAATCAGGTTCAGAAAAGAGCAGGCTTGAAGAGCAACAAAGAGCTGAGAAAAGAACACGAGAGGCCAAGGGGGAGCAATTTACTCCAAGATGGTTTAACAGGACCGATGAAATCGCCCCTACACCCTGGGGCGAGCTGGAAGTGTATGAATACAATGGAAAATACACCGAGCACCGCGCTGCCATTGACAGCTCAAGTGTGGCCGACGACGATACAGACGTCACTTCGATCGAATTCAACCCGTGGCAGTACAGTAGCTCATCTTCCCAATGATTTTCGTA GGGTCTGAAACTGCACATCCGTATTTTTATTATCCAATATGCTTCCAGGCCTTGCTTTGCACGCTGATTCATCTCAGCAGAGTTTTCGTGCCTTTGTAGTATTATGACCTTCACTTTTTCCCTTCTTCATGCTTCTACTGTTCAGGAAGTGATGGTGTATTCGATGTAGTCCATATACTGTCGTTGTTAATCTAGCGA                                                                                   ]
[+] EMBL AU225702             [                                                                                                                                                                         gccgctCAAACCCTAGCCCCGCTAGCGGGAGCGGTCGAGCACACACGCACGCGCGCGCGCGCGCGCGGAGTTCTCTCTCTCTCCTGTTGACCACCTGCAGATCGCCCGCGCGATGGGATCCAAGGACGGGAGTGGAGCCGCCTCGTCGGGAGGCGGCGGGGGCTTCTTCTCCTCGATCGCCGCCGGCGTGCGCAGCTTGGGCACCGCCGTCCACAAATCTGTCAACGGGTTGGTCGGCTATGAAGGACTTGAAGTTATTAACCCAGATGGAGGCACAGAAAGATGCGGAAGCTGAGGCTTTGAGAGGGCGATGGAAACAAGAGGATCGTGATAGTTATTGGAAAGATGATGCACAAGTACATAGGGGCAGATGTTACATCACTTGTGACACTTCCGGTCATCATTTTTGAGCCAATGACAATGCTCCAGAAAATGGCAGAGTTGATGGAATA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CB623304             [                                                                                                                                                                                                                                                                                                                                                                                             ACAAATCTGTCAACGGGTTGGTCGGCTATGAAGGACTTGAAGTTATTAACCCAGATGGAGGCACAG AAGATGCGGAAGCTGAGGCTTTGAGAGGGCGATGGAAACAAGAGGATCGTGATAGTTATTGG AAGATGATGCACAAGTACATAGGGGCAGATGTTACATCACTTGTGACACTTCCGGTCATCATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCAGAGTTGATGGAATACTGTGAACTTTTAGACAAAGCAGATGAATGCGAAGACCCGTACATGCGTATGGCATATGCCTCTGCATGGGCTGTATCGGTCTACTTTGCATACCAGCGTACCTGGAAGCCTTTCAATCCCATCCTTGGGGAGACATATGAGATGGTTAACCACCAGGGTATTTCATTTATTGCTGAGCAGGTAAGCCATCATCCTCCGATGGGTGCCGCTCACTGTGAAAATGCACATTTTACATATGACATCACCTCCAAGTTGAAGACCAAATTCTTGGGGAACTCTCTGGAAGTTTATCCACTTGGAAGGACTAGAGTGTCACTTAAGAAGTCCGGTGTCAAGCTGGAATTGGTACCACCACTCACGAAGGTCAACAACTTGATATTTGGGCGTACTTGGGTTGATTCTCCTGGAGAGATGGTATTGACAAACCTGACAACTGGAGACAAAGTTGTGCTTTTATTCCAGCCATGTGGCTGGTTTGGGGCTGGTCGGTACGAGGTGGATGGCTATGTGTATAGTGCAGCTGAAGAACCCAAAATAATGATAACTGGAAAGTGGAACCAGTCCATGAGTTGTCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CF196019             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ACCACCAGGGTATTTCATTTATTGCTGAGCAGGTAAGCCATCATCCTCCGATGGGTGCCGCTCACTGTGAAAATGCACATTTTACATATGACATCACCTCCAAGTTGAAGACCAAATTCTTGGGGAACTCTCTGGAAGTTTATCCACTTGGAAGGACTAGAGTGTCACTTAAGAAGTCCGGTGTCAAGCTGGAATTGGTACCACCACTCACGAAGGTCAACAACTTGATATTTGGGCGTACTTGGGTTGATTCTCCTnnnnnnn                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AK119251             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TCCAGCCATGTGGCTGGTTTGGGGCTGGTCGGTACGAGGTGGATGGCTATGTGTATAGTGCAGCTGAAGAACCCAAAATAATGATAACTGGAAAGTGGAACCAGTCCATGAGTTGTCAGCCATGCGATCAAGAAGGCGATCCTCTTCCAGGAACTGAGCTAAAGGAGATATGGAGAGTTGCTCCTACTCCACCAAATGACAAGTACCAGTACACGCACTTCGCGCACAAAATAAACAGCTTCGATACGGCGCCGAAGAAGCTATTGGCATCGGACTCCCGATTGAGGCCTGATAGATATGCCCTCGAGAAGGGTGACATGTCAAAATCAGGTTCAGAAAAGAGCAGGCTTGAAGAGCAACAAAGAGCTGAGAAAAGAACACGAGAGGCCAAGGGGGAGCAATTTACTCCAAGATGGTTTAACAGGACCGATGAAATCGCCCCTACACCCTGGGGCGAGCTGGAAGTGTATGAATACAATGGAAAATACACCGAGCACCGCGCTGCCATTGACAGCTCAAGTGTGGCCGACGACGATACAGACGTCACTTCGATCGAATTCAACCCGTGGCAGTACAGTAGCTCATCTTCCCAATGATTTTCGTA GGGTCTGAAACTGCACATCCGTATTTTTATTATCCAATATGCTTCCAGGCCTTGCTTTGCACGCTGATTCATCTCAGCAGAGTTTTCGTGCCTTTGTAGTATTATGACCTTCACTTTTTCCCTTCTTCATGCTTCTACTGTTCAGGAAGTGATGGTGTATTCGATGTAGTCCATATACTGTCGTTGTTAATCTAGCGA                                                                                   ]
[-] EMBL CB623305             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CTGGTCGGTACGAGGTGGATGGCTATGTGTATAGTGCAGCTGAAGAACCCAAAATAATGATAACTGGAAAGTGGAACCAGTCCATGAGTTGTCAGCCATGCGATCAAGAAGGCGATCCTCTTCCAGGAACTGAGCTAAAGGAGATATGGAGAGTTGCTCCTACTCCACCAAATGACAAGTACCAGTACACGCACTTCGCGCACAAAATAAACAGCTTCGATACGGCGCCGAAGAAGCTATTGGCATCGGACTCCCGATTGAGGCCTGATAGATATGCCCTCGAGAAGGGTGACATGTCAAAATCAGGTTCAGAAAAGAGCAGGCTTGAAGAGCAACAAAGAGCTGAGAAAAGAACACGAGAGGCCAAGGGGGAGCAATTTACTCCAAGATGGTTTAACAGGACCGATGAAATCGCCCCTACACCCTGGGGCGAGCTGGAAGTGTATGAATACAATGGAAAATACACCGAGCACCGCGCTGCCATTGACAGCTCAAGTGTGGCCGACGACGATACAGACGTCACTTCGATCGAATTCAACCCGTGGCAGTACAGTAGCTCATCTTCCCAATGATTTTCGTA GGGTCTGAAACTGCACATCCGTATTTTTATTATCCAATATGCTTCCAGGCCTTGCTTTGCACGCTGATTCATCTCAGCAGAGTTTTCGTGCCTTTGTAGTATTATGACCTTCACTTTTTCCCTTCTTCATGCTTCTACTGTTCAGGAAGTGATGGTGTATTCGATGTAGTCCATATACTGTCGTTGTTAATCTAGCGAAAATTACAACAtttcccttg                                                               ]
[+] EMBL CF315064             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TGAGTTGTCAGCCATGCGATCAAGAAGGCGATCCTCTTCCAGGAACTGAGCTAAAGGAGATATGGAGAGTTGCTCCTACTCCACCAAATGACAAGTACCAGTACACGCACTTCGCGCACAAAATAAACAGCTTCGATACGGCGCCGAAGAAGCTATTGGCATCGGACTCCCGATTGAGGCCTGATAGATATGCCCTCGAGAAGGGTGACATGTCAAAATCAGGTTCAGAAAAGAGCAGGCTTGAAGAGCAACAAAGAGCTGAGAAAAGAACACGAGAGGCCAAGGGGGAGCAATTTACTCCAAGATGGTTTAACAGGACCGATGAAATCGCCCCTACACCCTGGGGCGAGCTGGAAGTGTATGAATACAATGGAAAATACACCGAGCACCGCGCTGCCATTGACAGCTCAAGTGTGGCCGACGACGATACAGACGTCACTTCGATCGAATTCAACCCGTGGCAGTACAGTAGCTCATCTTCCCAATGATTTTCGTANGGGTCTGAAACTGCACATCCGTATTTTTATTATCCAATATGCTTCCAGGCCTTGCTTTGCACG                                                                                                                                                                                                                          ]
[+] EMBL CB679152             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ACAACT TCAGGACACGCACTTCGCGCACAAAATAAACAGCTTCGATACGGCGCCGAAGAAGCTATTGGCATCGGACTCCCGATTGAGGCCTGATAGATATGCCCTCGAGAAGGGTGACATGTCAAAATCAGGTTCAGAAAAGAGCAGGCTTGAAGAGCAACAAAGAGCTGAGAAAAGAACACGAGAGGCCAAGGGGGAGCAATTTACTCCGAGATGGTTTAACAGGACCGATGAAATCGCCCCTACACCCTGGGGCGAGCTGGAAGTGTATGAATACAATGGAAAATACACCGAGCACCGCGCTGCCATTGACAGCTCAAGTGTGGCCGACGACGATACAGACGTCACTTCGATCGAATTCAACCCGTGGCAGTACAGTAGCTCATCTTCCCAATGATTTTCGTA GGGTCTGAAACTGCACATCCGTATTTTTATTATCCAATATGCTTCCAGGCCTTGCTTTGCACGCTGATTCATCTCAGCAGAGTTTTCGTGCCTTTGTAGTATTATGACCTTCACTTTTTCCCTTCTTCATGCTTCTACTGTTCAGGAAGTGATGGTGTATTCGATGTAGTCCATATACTGTCGTTGTTAATCTAGCGA                                                                                   ]
[+] EMBL AU174957             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AAATCAGGTTCAGAAAAGAGCAGGCTTGAAGAGCAACAAAGAGCTGAGAAAAGAACACGAGAGGCCAAGGGGGAGCAATTTACTCCAAGATGGTTTAACAGGACCGATGAAATCGCCCCTACACCCTGGGGCGAGCTGGAAGTGTATGAATACAATGGAAAATACACCGAGCACCGCGCTGCCATTGACAGCTCAAGTGTGGCCGACGACGATACAGACGTCACTTCGATCGAATTCAACCCGTGGCAGTACAGTAGCTCATCTTCCCAATGATTTTCGTA GGGTCTGAAACTGCACATCCGTATTTTTATTATCCAATATGCTTCCAGGCCTTGCTTTGCACGCTGATTCATCTCAGCAGAGTTTTCGTGCCTTTGTAGTATTATGACCTTCACTTTTTCCCTTCTTCATGCTTCTACTGTTCAGGAAGTGATGGTGTATTCGATGTAG                                                                                                                ]
[-] EMBL CA756158             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CAACAAAGAGCTGAGAAAAGAACACGAGAGGCCAAGGGGGAGCAATTTACTCCAAGATGGTTTAACAGGACCGATGAAATCGCCCCTACACCCTGGGGCGAGCTGGAAGTGTATGAATACAATGGAAAATACACCGAGCACCGCGCTGCCATTGACAGCTCAAGTGTGGCCGACGACGATACAGACGTCACTTCGATCGAATTCAACCCGTGGCAGTACAGTAGCTCATCTTCCCAATGATTTTCGTA GGGTCTGAAACTGCACATCCGTATTTTTATTATCCAATATGCTTCCAGGCCTTGCTTTGCACGCTGATTCATCTCAGCAGAGTTTTCGTGCCTTTGTAGTATTATGACCTTCACTTTTTCCCTTCTTCATGCTTTTACTGTTCAGGAAGTGATGGTGTATTCGATGTAGTCCATATACTGTCGTTGTTAATCTAGCGAAAATTCCACCAAAAAAAAAAAAAAAAAAAA                                                     ]
[+] EMBL AU174958             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CGATGAAATCGCCCCTACACCCTGGGGCGAGCTGGAAGTGTATGAATACAATGGAAAATACACCGAGCACCGCGCTGCCATTGACAGCTCAAGTGTGGCCGACGACGATACAGACGTCACTTCGATCGAATTCAACCCGTGGCAGTACAGTAGCTCATCTTCCCAATGATTTTCGTA GGGTCTGAAACTGCACATCCGTATTTTTATTATCCAATATGCTTCCAGGCCTTGCTTTGCACGCTGATTCATCTCAGCAGAGTTTTCGTGCCTTTGTAGTATTATGACCTTCACTTTTTCCCTTCTTCATGCTTCTACTGTTCAGGAAGTGATGGTGTATTCGATGTAGTCCATATACTGTCGTTGTTAATCTAGCGAAAATTACAACAAAAAAAAAA                                                               ]
[+] EMBL CF321893             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CCTTTGTAGTATTATGACCTTCACTTTTTCCCTTCTTCATGCTTCTACTGTTCAGGAAGTGATGGTGTATTCGATGTAGTCCATATACTGTCGTTGTTAATCTAGCGAAAATTACAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTAAAAAAAAAAACCACTGTCTTGCCGTTACGTACCGTAT]




>consensus_14052#0
TCGCCTTGCTTGATTTGCCTCGCCTGCCCTTTTTCTCGCGCGGCCGCCTCCGAGATTTCT
CCTCCTCCTCCTCCTCCTCGACTCGACTCGACTCACCCCCCACTGAAATCTTCCTCCCAC
CACCGCGCCGCGACGTCGCACGCCCCCGCGGCCGCCGCCGACGTCGCTGTACCCCCAAAC
CCTAGCCCCGCTAGCGGGAGCGGTCGAGCACACACGCACGCGCGCGCGCGCGCGCGGAGT
TCTCTCTCTCTCCTGTTGACCACCTGCAGATCGCCCGCGCGATGGGATCCAAGGACGGGA
GTGGAGCCGCCTCGTCGGGAGGCGGCGGGGGCTTCTTCTCCTCGATCGCCGCCGGCGTGC
GCAGCTTGGGCACCGCCGTCCACAAATCTGTCAACGGGTTGGTCGGCTATGAAGGACTTG
AAGTTATTAACCCAGATGGAGGCACAGAAGATGCGGAAGCTGAGGCTTTGAGAGGGCGAT
GGAAACAAGAGGATCGTGATAGTTATTGGAAGATGATGCACAAGTACATAGGGGCAGATG
TTACATCACTTGTGACACTTCCGGTCATCATTTTTGAGCCAATGACAATGCTTCAGAAAA
TGGCAGAGTTGATGGAATACTGTGAACTTTTAGACAAAGCAGATGAATGCGAAGACCCGT
ACATGCGTATGGCATATGCCTCTGCATGGGCTGTATCGGTCTACTTTGCATACCAGCGTA
CCTGGAAGCCTTTCAATCCCATCCTTGGGGAGACATATGAGATGGTTAACCACCAGGGTA
TTTCATTTATTGCTGAGCAGGTAAGCCATCATCCTCCGATGGGTGCCGCTCACTGTGAAA
ATGCACATTTTACATATGACATCACCTCCAAGTTGAAGACCAAATTCTTGGGGAACTCTC
TGGAAGTTTATCCACTTGGAAGGACTAGAGTGTCACTTAAGAAGTCCGGTGTCAAGCTGG
AATTGGTACCACCACTCACGAAGGTCAACAACTTGATATTTGGGCGTACTTGGGTTGATT
CTCCTGGAGAGATGGTATTGACAAACCTGACAACTGGAGACAAAGTTGTGCTTTTATTCC
AGCCATGTGGCTGGTTTGGGGCTGGTCGGTACGAGGTGGATGGCTATGTGTATAGTGCAG
CTGAAGAACCCAAAATAATGATAACTGGAAAGTGGAACCAGTCCATGAGTTGTCAGCCAT
GCGATCAAGAAGGCGATCCTCTTCCAGGAACTGAGCTAAAGGAGATATGGAGAGTTGCTC
CTACTCCACCAAATGACAAGTACCAGTACACGCACTTCGCGCACAAAATAAACAGCTTCG
ATACGGCGCCGAAGAAGCTATTGGCATCGGACTCCCGATTGAGGCCTGATAGATATGCCC
TCGAGAAGGGTGACATGTCAAAATCAGGTTCAGAAAAGAGCAGGCTTGAAGAGCAACAAA
GAGCTGAGAAAAGAACACGAGAGGCCAAGGGGGAGCAATTTACTCCAAGATGGTTTAACA
GGACCGATGAAATCGCCCCTACACCCTGGGGCGAGCTGGAAGTGTATGAATACAATGGAA
AATACACCGAGCACCGCGCTGCCATTGACAGCTCAAGTGTGGCCGACGACGATACAGACG
TCACTTCGATCGAATTCAACCCGTGGCAGTACAGTAGCTCATCTTCCCAATGATTTTCGT
AGGGTCTGAAACTGCACATCCGTATTTTTATTATCCAATATGCTTCCAGGCCTTGCTTTG
CACGCTGATTCATCTCAGCAGAGTTTTCGTGCCTTTGTAGTATTATGACCTTCACTTTTT
CCCTTCTTCATGCTTCTACTGTTCAGGAAGTGATGGTGTATTCGATGTAGTCCATATACT
GTCGTTGTTAATCTAGCGAAAATTACAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
TTTTAAAAAAAAAAACCACTGTCTTGCCGTTACGTACCGTAT

consensusID : consensus_14052#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 563
fasta sequence

                              [GTAATAGATCACTATAGGGAATGGTACCGGCCCCCTCCGATTGAGNCTGATAGATATGCCTCGAGAAGGTGACATGTCAAATCAGGTCAGAAGAGCAGGCTGAGAGCACAAGAGCTGAGAAGACACGAGAGGCCAAGGGGAGCAATTACTCCAAGATGGTTTAACAGGACCGATGAAATCGCCCCTACACCCTGGGGCGAGCTGGAAGTGTATGAATACAATGGAAAATACACCGAGCACCGCGCTGCCATTGACAGCTCAAGTGTGGCCGACGACGATACAGACGTCACTTCGATCGAATTCAACCCGTGGCAGTACAGTAGCTCATCTTCCCAATGATTTTCGTAGGGTCTGAAACTGCACATCCGTATTTTTATTATCCAATATGCTTCCAGGCCTTGCTTTGCACGCTGATTCATCTCAGCAGAGTTTTCGTGCCTTTGTAGTATTATGACCTTCACTTTTTCCCTTCTTCATGCTTCTACTGTTCTAGGAAGTGAGGGNGTATTCGATGTAGTCCATATACTGTCGTTGTTGATCNNGCGNAAATTACNAANCCANNA]

[-] EMBL AA752939             [GTAATAGATCACTATAGGGAATGGTACCGGCCCCCTCCGATTGAGNCTGATAGATATGCCTCGAGAAGGTGACATGTCAAATCAGGTCAGAAGAGCAGGCTGAGAGCACAAGAGCTGAGAAGACACGAGAGGCCAAGGGGAGCAATTACTCCAAGATGGTTTAACAGGACCGATGAAATCGCCCCTACACCCTGGGGCGAGCTGGAAGTGTATGAATACAATGGAAAATACACCGAGCACCGCGCTGCCATTGACAGCTCAAGTGTGGCCGACGACGATACAGACGTCACTTCGATCGAATTCAACCCGTGGCAGTACAGTAGCTCATCTTCCCAATGATTTTCGTAGGGTCTGAAACTGCACATCCGTATTTTTATTATCCAATATGCTTCCAGGCCTTGCTTTGCACGCTGATTCATCTCAGCAGAGTTTTCGTGCCTTTGTAGTATTATGACCTTCACTTTTTCCCTTCTTCATGCTTCTACTGTTCTAGGAAGTGAGGGNGTATTCG                                                    ]
[-] EMBL OSS2072A             [                                                                                                                                                                                                                                                                                                                                                                                   TTTTATTATCCAATATGCTTCCAGGCCTTGCTTTGCACGCTGATTCATCTCAGCAGAGTTTTCGTGCCTTTGTAGTATTATGACCTTCACTTTTTCCCTTCTTCATGCTTCTACTGTTC AGGAAGTGATGGTGTATTCGATGTAGTCCATATACTGTCGTTGTTGATCNNGCGNAAATTACNAANCCANNA]




>consensus_14052#1
GTAATAGATCACTATAGGGAATGGTACCGGCCCCCTCCGATTGAGNCTGATAGATATGCC
TCGAGAAGGTGACATGTCAAATCAGGTCAGAAGAGCAGGCTGAGAGCACAAGAGCTGAGA
AGACACGAGAGGCCAAGGGGAGCAATTACTCCAAGATGGTTTAACAGGACCGATGAAATC
GCCCCTACACCCTGGGGCGAGCTGGAAGTGTATGAATACAATGGAAAATACACCGAGCAC
CGCGCTGCCATTGACAGCTCAAGTGTGGCCGACGACGATACAGACGTCACTTCGATCGAA
TTCAACCCGTGGCAGTACAGTAGCTCATCTTCCCAATGATTTTCGTAGGGTCTGAAACTG
CACATCCGTATTTTTATTATCCAATATGCTTCCAGGCCTTGCTTTGCACGCTGATTCATC
TCAGCAGAGTTTTCGTGCCTTTGTAGTATTATGACCTTCACTTTTTCCCTTCTTCATGCT
TCTACTGTTCTAGGAAGTGAGGGNGTATTCGATGTAGTCCATATACTGTCGTTGTTGATC
NNGCGNAAATTACNAANCCANNA

consensusID : consensus_14052#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 201
fasta sequence

                              [GATTGAGGCCTGATAGATATGCCCTCCACAAGGGTGACATGTCATTATCTCGTTCAGAATACAGCTGGCTTGGAGAGCAACTAGAGCTGAGAAAAGAACACTAGAGGCCAAGGGGGATCAATTTACTCCCAGATGGTTTAACAGGACCGATGAAATCGCCCCTACACCCTGAGGCGAGCTGGAAGTGTATGAATACAATGG]

[+] EMBL CA998055             [GATTGAGGCCTGATAGATATGCCCTCCACAAGGGTGACATGTCATTATCTCGTTCAGAATACAGCTGGCTTGGAGAGCAACTAGAGCTGAGAAAAGAACACTAGAGGCCAAGGGGGATCAATTTACTCCCAGATGGTTTAACAGGACCGATGAAATCGCCCCTACACCCTGAGGCGAGCTGGAAGTGTATGAATACAATGG]




>consensus_14052#2
GATTGAGGCCTGATAGATATGCCCTCCACAAGGGTGACATGTCATTATCTCGTTCAGAAT
ACAGCTGGCTTGGAGAGCAACTAGAGCTGAGAAAAGAACACTAGAGGCCAAGGGGGATCA
ATTTACTCCCAGATGGTTTAACAGGACCGATGAAATCGCCCCTACACCCTGAGGCGAGCT
GGAAGTGTATGAATACAATGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14052#0      TCGCCTTGCTTGATTTGCCTCGCCTGCCCTTTTTCTCGCGCGGCCGCCTCCGAGATTTCT 60
consensus_14052#1      ------------------------------------------------------------
consensus_14052#2      ------------------------------------------------------------
                                                                                   

consensus_14052#0      CCTCCTCCTCCTCCTCCTCGACTCGACTCGACTCACCCCCCACTGAAATCTTCCTCCCAC 120
consensus_14052#1      ------------------------------------------------------------
consensus_14052#2      ------------------------------------------------------------
                                                                                   

consensus_14052#0      CACCGCGCCGCGACGTCGCACGCCCCCGCGGCCGCCGCCGACGTCGCTGTACCCCCAAAC 180
consensus_14052#1      ------------------------------------------------------------
consensus_14052#2      ------------------------------------------------------------
                                                                                   

consensus_14052#0      CCTAGCCCCGCTAGCGGGAGCGGTCGAGCACACACGCACGCGCGCGCGCGCGCGCGGAGT 240
consensus_14052#1      ------------------------------------------------------------
consensus_14052#2      ------------------------------------------------------------
                                                                                   

consensus_14052#0      TCTCTCTCTCTCCTGTTGACCACCTGCAGATCGCCCGCGCGATGGGATCCAAGGACGGGA 300
consensus_14052#1      ------------------------------------------------------------
consensus_14052#2      ------------------------------------------------------------
                                                                                   

consensus_14052#0      GTGGAGCCGCCTCGTCGGGAGGCGGCGGGGGCTTCTTCTCCTCGATCGCCGCCGGCGTGC 360
consensus_14052#1      ------------------------------------------------------------
consensus_14052#2      ------------------------------------------------------------
                                                                                   

consensus_14052#0      GCAGCTTGGGCACCGCCGTCCACAAATCTGTCAACGGGTTGGTCGGCTATGAAGGACTTG 420
consensus_14052#1      ------------------------------------------------------------
consensus_14052#2      ------------------------------------------------------------
                                                                                   

consensus_14052#0      AAGTTATTAACCCAGATGGAGGCACAGAAGATGCGGAAGCTGAGGCTTTGAGAGGGCGAT 480
consensus_14052#1      ------------------------------------------------------------
consensus_14052#2      ------------------------------------------------------------
                                                                                   

consensus_14052#0      GGAAACAAGAGGATCGTGATAGTTATTGGAAGATGATGCACAAGTACATAGGGGCAGATG 540
consensus_14052#1      ------------------------------------------------------------
consensus_14052#2      ------------------------------------------------------------
                                                                                   

consensus_14052#0      TTACATCACTTGTGACACTTCCGGTCATCATTTTTGAGCCAATGACAATGCTTCAGAAAA 600
consensus_14052#1      ------------------------------------------------------------
consensus_14052#2      ------------------------------------------------------------
                                                                                   

consensus_14052#0      TGGCAGAGTTGATGGAATACTGTGAACTTTTAGACAAAGCAGATGAATGCGAAGACCCGT 660
consensus_14052#1      ------------------------------------------------------------
consensus_14052#2      ------------------------------------------------------------
                                                                                   

consensus_14052#0      ACATGCGTATGGCATATGCCTCTGCATGGGCTGTATCGGTCTACTTTGCATACCAGCGTA 720
consensus_14052#1      ------------------------------------------------------------
consensus_14052#2      ------------------------------------------------------------
                                                                                   

consensus_14052#0      CCTGGAAGCCTTTCAATCCCATCCTTGGGGAGACATATGAGATGGTTAACCACCAGGGTA 780
consensus_14052#1      ------------------------------------------------------------
consensus_14052#2      ------------------------------------------------------------
                                                                                   

consensus_14052#0      TTTCATTTATTGCTGAGCAGGTAAGCCATCATCCTCCGATGGGTGCCGCTCACTGTGAAA 840
consensus_14052#1      ------------------------------------------------------------
consensus_14052#2      ------------------------------------------------------------
                                                                                   

consensus_14052#0      ATGCACATTTTACATATGACATCACCTCCAAGTTGAAGACCAAATTCTTGGGGAACTCTC 900
consensus_14052#1      ------------------------------------------------------------
consensus_14052#2      ------------------------------------------------------------
                                                                                   

consensus_14052#0      TGGAAGTTTATCCACTTGGAAGGACTAGAGTGTCACTTAAGAAGTCCGGTGTCAAGCTGG 960
consensus_14052#1      ------------------------------------------------------------
consensus_14052#2      ------------------------------------------------------------
                                                                                   

consensus_14052#0      AATTGGTACCACCACTCACGAAGGTCAACAACTTGATATTTGGGCGTACTTGGGTTGATT 1020
consensus_14052#1      ------------------------------------------------------------
consensus_14052#2      ------------------------------------------------------------
                                                                                   

consensus_14052#0      CTCCTGGAGAGATGGTATTGACAAACCTGACAACTGGAGACAAAGTTGTGCTTTTATTCC 1080
consensus_14052#1      ------------------------------------------------------------
consensus_14052#2      ------------------------------------------------------------
                                                                                   

consensus_14052#0      AGCCATGTGGCTGGTTTGGGGCTGGTCGGTACGAGGTGGATGGCTATGTGTATAGTGCAG 1140
consensus_14052#1      ------------------------------------------------------------
consensus_14052#2      ------------------------------------------------------------
                                                                                   

consensus_14052#0      CTGAAGAACCCAAAATAATGATAACTGGAAAGTGGAACCAGTCCATGAGTTGTCAGCCAT 1200
consensus_14052#1      ------------------------------------------------------------
consensus_14052#2      ------------------------------------------------------------
                                                                                   

consensus_14052#0      GCGATCAAGAAGGCGATCCTCTTCCAGGAACTGAGCTAAAGGAGATATGGAGAGTTGCTC 1260
consensus_14052#1      ------------------------------------------------------------
consensus_14052#2      ------------------------------------------------------------
                                                                                   

consensus_14052#0      CTACTCCACCAAATGACAAGTACCAGTACACGCACTTCGCGCACAAAATAAACAGCTTCG 1320
consensus_14052#1      ---------------------------------------------------------GTA 3
consensus_14052#2      ------------------------------------------------------------
                                                                                   

consensus_14052#0      ATACGGCGCCGAAGAAGCTATTGGCATCGGACTCC--CGATTGAGGCCTGATAGATATGC 1378
consensus_14052#1      ATAGATCACTATAGGG---AATGGTACCGGCCCCCTCCGATTGAGNC-TGATAGATATGC 59
consensus_14052#2      --------------------------------------GATTGAGGCCTGATAGATATGC 22
                                                             ******* * ************

consensus_14052#0      CCTCGAGAAGGGTGACATGTCAAAATCAGGTTCAGAAAAGAGCAGGCTTGAAGAGCAACA 1438
consensus_14052#1      C-TCGAGAAGG-TGACATGTCAAA-TCAGGTC---AGAAGAGCAGGCT--GAGAGCAC-- 109
consensus_14052#2      CCTCCACAAGGGTGACATGTCATTATCTCGTTCAGAATACAGCTGGCTTGGAGAGCAAC- 81
                       * ** * **** **********   **  **    *  * *** ****   ******   

consensus_14052#0      AAGAGCTGAGAAAAGAACACGAGAGGCCAAGGGGGAGCAATTTACTCCAAGATGGTTTAA 1498
consensus_14052#1      AAGAGCTGAGAAGA---CACGAGAGGCCAAGGGG-AGCAATT-ACTCCAAGATGGTTTAA 164
consensus_14052#2      TAGAGCTGAGAAAAGAACACTAGAGGCCAAGGGGGATCAATTTACTCCCAGATGGTTTAA 141
                        *********** *   *** ************* * ***** ***** ***********

consensus_14052#0      CAGGACCGATGAAATCGCCCCTACACCCTGGGGCGAGCTGGAAGTGTATGAATACAATGG 1558
consensus_14052#1      CAGGACCGATGAAATCGCCCCTACACCCTGGGGCGAGCTGGAAGTGTATGAATACAATGG 224
consensus_14052#2      CAGGACCGATGAAATCGCCCCTACACCCTGAGGCGAGCTGGAAGTGTATGAATACAATGG 201
                       ****************************** *****************************

consensus_14052#0      AAAATACACCGAGCACCGCGCTGCCATTGACAGCTCAAGTGTGGCCGACGACGATACAGA 1618
consensus_14052#1      AAAATACACCGAGCACCGCGCTGCCATTGACAGCTCAAGTGTGGCCGACGACGATACAGA 284
consensus_14052#2      ------------------------------------------------------------
                                                                                   

consensus_14052#0      CGTCACTTCGATCGAATTCAACCCGTGGCAGTACAGTAGCTCATCTTCCCAATGATTTTC 1678
consensus_14052#1      CGTCACTTCGATCGAATTCAACCCGTGGCAGTACAGTAGCTCATCTTCCCAATGATTTTC 344
consensus_14052#2      ------------------------------------------------------------
                                                                                   

consensus_14052#0      GTAGGGTCTGAAACTGCACATCCGTATTTTTATTATCCAATATGCTTCCAGGCCTTGCTT 1738
consensus_14052#1      GTAGGGTCTGAAACTGCACATCCGTATTTTTATTATCCAATATGCTTCCAGGCCTTGCTT 404
consensus_14052#2      ------------------------------------------------------------
                                                                                   

consensus_14052#0      TGCACGCTGATTCATCTCAGCAGAGTTTTCGTGCCTTTGTAGTATTATGACCTTCACTTT 1798
consensus_14052#1      TGCACGCTGATTCATCTCAGCAGAGTTTTCGTGCCTTTGTAGTATTATGACCTTCACTTT 464
consensus_14052#2      ------------------------------------------------------------
                                                                                   

consensus_14052#0      TTCCCTTCTTCATGCTTCTACTGTTC-AGGAAGTGATGGTGTATTCGATGTAGTCCATAT 1857
consensus_14052#1      TTCCCTTCTTCATGCTTCTACTGTTCTAGGAAGTGAGGGNGTATTCGATGTAGTCCATAT 524
consensus_14052#2      ------------------------------------------------------------
                                                                                   

consensus_14052#0      ACTGTCGTTGTTAATCTAGCGAAAATTACAACAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1917
consensus_14052#1      ACTGTCGTTGTTGATCNNGCGNAAATTACNAANCCANNA--------------------- 563
consensus_14052#2      ------------------------------------------------------------
                                                                                   

consensus_14052#0      AAATTTTAAAAAAAAAAACCACTGTCTTGCCGTTACGTACCGTAT 1962
consensus_14052#1      ---------------------------------------------
consensus_14052#2      ---------------------------------------------