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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14064#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1613 fasta sequence
[CCCGGCGGACAACCACCTCCTCGCCTGCGGCGCGACGGCACCGGCCGTGCTCCCCGACGGCCGACGCTTCGTCCCCGACTCCGGCTGCGCCTCCACGCGCCTCCGCTCCCCGGCACCTACCCTCCCGTCCGCGGCCTCCAGCGCGGCCCCGCAGCCGACCCCTCTCCACG-CCGCCG-CGC-GGGT---CTTCTCCTGCCGCGCGTCCTACGACCTCGCCGTCCGCCGCCGCGGGTACCACGTCCTGCGCCTCCACTTCTACCCCTTCGAGCCCGCGCTCGCGTCCGCGCGCTTCCACGTCGGCGCCGCCGGATTCCTCCTCCTCCACAACTTCTCCGCGTCGGCCCCCGTCGTGAAGGAGTTCATCCTACCCGTCCACTCCGACGTCCTCGTCCTCACCTTCGTCCCCGAGTCGGGCTCTAACGCCTTCGTCAACGCCATCGAGCTCGTCTCGGCCCCCGATGAGCTCGTCGGCGACATCGGCACCCTCGTCACGAGCAGCGGCACTGACCAGACCAATGGATTGTCGTCTCAGGTCTATGAGATGCTCTATCGGATCAACGTCGCCGGCCGCAAGGTCACACCGTTCAACGACACGCTGTGGCGAACATGGGTCAACGACGAGCGCTTCCTCGTCAGCACGGAATCATCCAACAGCGGGGTCTGGTCGTTCGGTGGCCGGATTGCTTATCCCAAGGGTAGCAGATTGATGACACGGGAGGTTGCTCCTGACAACGTGTACAACTCGGCGAGGTCAGTGAGCTCACAGGGCAAAGTGACATGGGGATTTCCCGTGCCTGCTTCCAGCAGGTACCTAGTGCGTATGCACTTCTGTGACATCGTGAGCAAGGCTCTAAATGAGCTTTACTTTGATATCTATGTCAATGGTCAGCTAGCAGTAAAGGATTTCGATATCTCTGGTGCCACTGGATTCTTAGCCTATCCATATTACATCGACTTTGTTGTGGATGTTGAGGATGAAGGGGCCCTGAAATTGGCCA-TTGGTGGCTCGAAGAATAGCCGATCAGACGAAGTGAGCGGTATTCTTAAT-GCT-GTAGAGATAATGAGGATGAACAAAACAAATGG-TGGTATT-GATGGGGATTTTGCAGTTTCTCT-GGGCA-TGGAGTATGTGGCTAGCAAGGGGATCGGAGAATTTACTCGCTCACTGCTGTGTGGTTTCA-TTTTTGCGGGATTG-TTGT-TGGTTTTG-TTAA-TGCTTGTG-GTGAGGTTGAGGACTGA-GCTGAGGAATAATGGTACAACTTGGTC-TTGGCA-GCCA-AATGATTCTGGTGACGGGAAGCTGGCTAGAGCATATCAACTTGTGTCCGCTAAGACAGACTATTGAACATCATGAGATGATAATCTTTGAGGAGCTTTAAACTGTGGCTGTTGACCTATTGTATGTAATGACATATTGCA-TTACTTCAGTTGTAAGTATTGTA-GTTTTACACTT-TTACTCCCTTAA-TGGTAAGTTTTCGGTTATTTGAGCTTGGCTAATGGAGAAAACGGTCGTGGTGTTGTATCTGGCTCAAGATAT-TTGTTTGTA-TTAGTACTGCTTTTAATAGCTCTATCCAGTTTGTGATGCTTGAATGAATATGCCTG-CATTTATCTAGTTTAAAAAAAAA]
[+] EMBL AK106076 [CCCGGCGGACAACCACCTCCTCGCCTGCGGCGCGACGGCACCGGCCGTGCTCCCCGACGGCCGACGCTTCGTCCCCGACTCCGGCTGCGCCTCCACGCGCCTCCGCTCCCCGGCACCTACCCTCCCGTCCGCGGCCTCCAGCGCGGCCCCGCAGCCGACCCCTCTCCACG CCGCCG CGC GGGT CTTCTCCTGCCGCGCGTCCTACGACCTCGCCGTCCGCCGCCGCGGGTACCACGTCCTGCGCCTCCACTTCTACCCCTTCGAGCCCGCGCTCGCGTCCGCGCGCTTCCACGTCGGCGCCGCCGGATTCCTCCTCCTCCACAACTTCTCCGCGTCGGCCCCCGTCGTGAAGGAGTTCATCCTACCCGTCCACTCCGACGTCCTCGTCCTCACCTTCGTCCCCGAGTCGGGCTCTAACGCCTTCGTCAACGCCATCGAGCTCGTCTCGGCCCCCGATGAGCTCGTCGGCGACATCGGCACCCTCGTCACGAGCAGCGGCACTGACCAGACCAATGGATTGTCGTCTCAGGTCTATGAGATGCTCTATCGGATCAACGTCGCCGGCCGCAAGGTCACACCGTTCAACGACACGCTGTGGCGAACATGGGTCAACGACGAGCGCTTCCTCGTCAGCACGGAATCATCCAACAGCGGGGTCTGGTCGTTCGGTGGCCGGATTGCTTATCCCAAGGGTAGCAGATTGATGACACGGGAGGTTGCTCCTGACAACGTGTACAACTCGGCGAGGTCAGTGAGCTCACAGGGCAAAGTGACATGGGGATTTCCCGTGCCTGCTTCCAGCAGGTACCTAGTGCGTATGCACTTCTGTGACATCGTGAGCAAGGCTCTAAATGAGCTTTACTTTGATATCTATGTCAATGGTCAGCTAGCAGTAAAGGATTTCGATATCTCTGGTGCCACTGGATTCTTAGCCTATCCATATTACATCGACTTTGTTGTGGATGTTGAGGATGAAGGGGCCCTGAAATTGGCCA TTGGTGGCTCGAAGAATAGCCGATCAGACGAAGTGAGCGGTATTCTTAAT GCT GTAGAGATAATGAGGATGAACAAAACAAATGG TGGTATT GATGGGGATTTTGCAGTTTCTCT GGGCA TGGAGTATGTGGCTAGCAAGGGGATCGGAGAATTTACTCGCTCACTGCTGTGTGGTTTCA TTTTTGCGGGATTG TTGT TGGTTTTG TTAA TGCTTGTG GTGAGGTTGAGGACTGA GCTGAGGAATAATGGTACAACTTGGTC TTGGCA GCCA AATGATTCTGGTGACGGGAAGCTGGCTAGAGCATATCAACTTGTGTCCGCTAAGACAGACTATTGAACATCATGAGATGATAATCTTTGAGGAGCTTTAAACTGTGGCTGTTGACCTATTGTATGTAATGACATATTGCA TTACTTCAGTTGTAAGTATTGTA GTTTTACACTT TTACTCCCTTAA TGGTAA ]
[+] EMBL CB662874 [CCCGGCGGACAACCACCTCCTCGCCTGCGGCGCGACGGCACCGGCCGTGCTCCCCGACGGCCGACGCTTCGTCCCCGACTCCGGCTGCGCCTCCACGCGCCTCCGCTCCCCGGCACCTACCCTCCCGTCCGCGGCCTCCAGCGCGGCCCCGCAGCCGACCCCTCTCCACG CCGCCG CGC GGGT CTTCTCCTGCCGCGCGTCCTACGACCTCGCCGTCCGCCGCCGCGGGTACCACGTCCTGCGCCTCCACTTCTACCCCTTCGAGCCCGCGCTCGCGTCCGCGCGCTTCCACGTCGGCGCCGCCGGATTCCTCCTCCTCCACAACTTCTCCGCGTCGGCCCCCGTCGTGAAGGAGTTCATCCTACCCGTCCACTCCGACGTCCTCGTCCTCACCTTCGTCCCCGAGTCGGGCTCTAACGCCTTCGTCAACGCCATCGAGCTCGTCTCGGCCCCCGATGAGCTCGTCGGCGACATCGGCACCCTCGTCACGAGCAGCGGCACTGACCAGACCAATGGATTGTCGTCTCAGGTCTATGAGATGCTCTATCGGATCAACGTCGCCGGCCGCAAGGTCACACCGTTCAACGACACGCTGTGGCGAACATGGGTCAACGACGAGCGCTTCCTCGTCAGCACGGAATCATCCAACAGCGGGGTCTGGTCGTTCGGTGGCCG ]
[+] EMBL CB638143 [CCCGGCGGACAACCACCTCCTCGCCTGCGGCGCGACGGCACCGGCCGTGCTCCCCGACAGCCGACGCTTCGTCCCCGACTCCGGCTGCGCCTCCACGCGCCTCCGCTCCCCGGCACCTACCCTCCCGTCCGCGGCCTCCAGCGCGGCCCCGCAGCCGACCCCTCTCCACG CCGCCG CGC GGGT CTTCTCCTGCCGCGCGTCCTACGACCTCGCCGTCCGCCGCCGCGGGTACCACGTCCTGCGCCTCCACTTCTACCCCTTCGAGCCCGCGCTCGCGTCCGCGCGCTTCCACGTCGGCGCCGCCGGATTCCTCCTCCTCCACAACTTCTCCGCGTCGGCCCCCGTCGTGAAGGAGTTCATCCTACCCGTCCACTCCGACGTCCTCGTCCTCACCTTCGTCCCCGAGTCGGGCTCTAACGCCTTCGTCAACGCCATCGAGCTCGTCTCGGCCCCCGATGAGCTCGTCGGCGACATCGGCACCCTCGTCACGAGCAGCGG ]
[+] EMBL CB638127 [CCCGGCGGACAACCACCTCCTCGCCTGCGGCGCGACGGCACCGGCCGTGCTCCCCGACGGCCGACGCTTCGTCCCCGACTCCGGCTGCGCCTCCACGCGCCTCCGCTCCCCGGCACCTACCCTCCCGTCCGCGGCCTCCAGCGCGGCCCCGCAGCCGACCCCTCTCCACG CCGCCG CGC GGGT CTTCTCCTGCCGCGCGTCCTACGACCTCGCCGTCCGCCGCCGCGGGTCCCACGTCCTGCGCCTCCACTTCTACCCCTTCGAGCCCGCGCTCGCGTTCGCGCGCTTCCACGTCGGCGCCGCCGGATTCCTCCTCCTCCACAACTTCT ]
[+] EMBL AU166476 [CCCGGCGGACAACCACCTCCTCGCCTGCGGCGCGACGGCACCGGCCGTGCTCCCCGACGGCCGACGCTTCGTCCCCGACTCCGGCTGCGCCTCCACGCGCCTCCGCTCCCCGGCACCTACCCTCCCG ]
[+] EMBL AK069148 [ CCCGGCGGACAACCACC TCCTC GCCTGCGGCGCG ACGGCA CCGGCCGTGCTCCCCGACGGCCGACGCTTCGTCCCCGACTCCGGCTGCGCCTCC ACG CGCC TCCG CTCCCCGG CA CCTAC CCTCCACTTCTACCCCTTCGAGCCCGCGCTCGCGTCCGCGCGCTTCCACGTCGGCGCCGCCGGATTCCTCCTCCTCCACAACTTCTCCGCGTCGGCCCCCGTCGTGAAGGAGTTCATCCTACACGTCCACTCCGACGTCCTCGTCCTCACCTTCGTCCCCGAGTCGGGCTCTAACGCCTTCGTCAACGCCATCGAGCTCGTCTCGGCCCCCGATGAGCTCGTCGGCGACATCGGCACCCTCGTCACGAGCAGCGGCACTGACCAGACCAATGGATTGTCGTCTCAGGTCTATGAGATGCTCTATCGGATCAACGTCGCCGGCCGCAAGGTCACACCGTTCAACGACACGCTGTGGCGAACATGGGTCAACGACGAGCGCTTCCTCGTCAGCACGGAATCATCCAACAGCGGGGTCTGGTCGTTCGGTGGCCGGATTGCTTATCCCAAGGGTAGCAGATTGATGACACGGGAGGTTGCTCCTGACAACGTGTACAACTCGGCGAGGTCAGTGAGCTCACAGGGCAAAGTGACATGGGGATTTCCCGTGCCTGCTTCCAGCAGGTACCTAGTGCGTATGCACTTCTGTGACATCGTGAGCAAGGCTCTAAATGAGCTTTACTTTGATATCTATGTCAATGGTCAGCTAGCAGTAAAGGATTTCGATATCTCTGGTGCCACTGGATTCTTAGCCTATCCATATTACATCGACTTTGTTGTGGATGTTGAGGATGAAGGGGCCCTGAAATTGGCCA TTGGTGGCTCGAAGAATAGCCGATCAGACGAAGTGAGCGGTATTCTTAAT GCT GTAGAGATAATGAGGATGAACAAAACAAATGG TGGTATT GATGGGGATTTTGCAGTTTCTCT GGGCA TGGAGTATGTGGCTAGCAAGGGGATCGGAGAATTTACTCGCTCACTGCTGTGTGGTTTCA TTTTTGCGGGATTG TTGT TGGTTTTG TTAA TGCTTGTG GGGAGGTTGAGGACTGA GCTGAGGAATAATGGTACAACTTGGTC TTGGCA GCCA AATGATTCTGGTGACGGGAAGCTGGCTAGAGCATATCAACTTGTGTCCGCTAAGACAGACTATTGAACATCATGAGATGATAATCTTTGAGGAGCTTTAAACTGTGGCTGTTGACCTATTGTATGTAATGACATATTGCA TTACTTCAGTTGTAAGTATTGTA GTTTTACACTT TTACTCCCTTAA TGGTAAGTTTTCGGTTATTTGAGCTTGGCTAATGGAGAAAACGGTCGTGGTGTTGTATCTGGCTCAAGATAT TTGTTTGTA TTAGTACTGCTTTTAATAGCTCTATCCAGTTTGTGA ]
[+] EMBL CA767397 [ TGCCTGCTTCCAGCAGGTACCTAGTGCGTATGCACTTCTGTGACATCGTGAGCAAGGCTCTAAATGAGCTTTACTTTGATATCTATGTCAATGGTCAGCTAGCAGTAAAGGATTTCGATATCTCTGGTGCCACTGGATTCTTAGCCTATCCATATTACATCGACTTTGTTGTGGATGTTGAGGATGAAGTGGCCCTGAAATTGGCCA TTGGTGGCTCGAAGAATAGTCGATCAGACGAAGTGAGCGGTATTCTTAAT GCT GTAGAGATAATGAGGATGAACAAAACAAATGG TGGTATT GATGGGGATTTTGCAGTTTCTCT GGGCA TGGAGTATGTGGCTAGCAAGGGGATCGGAGAATTTGCTCGCTCACTGCTGTGTGGTTTCA TTTTTGCGGGATTG TTGT TGGTTTTG TTAA TGCTTGTG GTGAGGTTGAGGACTGA GCTGAGGAATAATGGTACAACTTGGTC TTGGCA GCCA AATGATTCTGGTGACGGGAAGCTGGCTAGAGCATATCAACTTGTGTCCGCTAAGACAGACTATTGAACATCATGAGATGATAATCTTTGAGGAGCTTTAAACTGCGGCTGTTGACCTATTGTATGTAATGACATATTGCA TTACCTCAGTTGTAAGTATTGTA GTTTTACGCTT TTACTCCCTTAA TGGTAAGTTTT ]
[-] EMBL CB638144 [ CATATTACATCGACTTTGTTGTGGATGTTGAGGATGAAGGGGCCCTGAAATTGGCCA TTGGTGGCTCGAAGAATAGCCGATCAGACGAAGTGAGCGGTATTCTTAAT GCT GTAGAGATAATGAGGATGAACAAAACAAATGG TGGTATT GATGGGGATTTTGCAGTTTCTCT GGGCA TGGAGTATGTGGCTAGCAAGGGGATCGGAGAATTTACTCGCTCACTGCTGTGTGGTTTCA TTTTTGCGGGATTG TTGT TGGTTTTG TTAA TGCTTGTG GTGAGGTTGAGGACTGA GCTGAGGAATAATGGTACAACTTGGTC TTGGCA GCCA AATGATTTTGGTGACGGGAAGCTGGCTAGAGCATATCAACTTGTGTCCGCTAAGACAGACTATTGAACATCATGAGATGATAATCTTTGAGGAGCTTTAAACTGTGGCTGTTGACCTATTGTATGTAATGACATATTGCA TTACTTCAGTTGTAAGTATTGTA GTTTTACACTT TTACTCCCTTAA TGGTAAGTTTTCGGTTATTTGAGCTTGGCTAATGGAGAAAACGGTCGTGGTGTTGTATCTGGCTCAAGATAT TTGTTTGTA TTAGGACTGCTTTTAATAGCTCTATCCAGTTTGTG ]
[+] EMBL BQ905914 [ TTTGTT TGNATTTCGAGGATGAATGGCCCCTGAAA TGCCCATTTGGTGGCTCGAAGAATAGTCGATCAGACGAAGTGA CGGTATTCTTAATGGCTCGTAGAGATAATGAGGATGAACTAAAC AATGGCTGGTATTCGATGGGGATTTTGCAGTTTCTCTCGGGCN TGGAGTATGTGGCTAGCAAGGGGATCGGAGAATTTGCTCGCTCACTGCTGTGTGGTTTCACTTTTTGCGGGATTGCTTGTCTGGTTTTGCTTAACTGCTTGTGCGTGAGGTTGAGGACTGACGCTGAGGAATAATGGTACAACTTGGTCATTGNCACGCCA AATGATTCTGGTGACGGGAAGCTGGCTAGAGCATATCAACTTGTGTCCGCTAAGACAGACTATTGAACATCATGAGATGATAATCTTTGAGGAGCTTTAAACTGCGGCTGTTGACCTATTGTATGTAATGACATATTGCACTTACTTCAGTTGTAAGTATTGTACGTTTTACACTTCTTACTCCCNTAACTGGTAAGTTTTCGGTTATTTGAGCTTGGCTAATGGAGAAAACGGTCGTGGTGTTGTATCTGGCTCAAGATATCTTGTTTGTACTTAGTACTGCTTTTAATAaaaaa ]
[-] EMBL CB638128 [ AATTGGCCA TTGGTGGCTCGAAGAATAGCCGATCAGACGAAGTGAGCGGTATTCTTAAT GCT GTAGAGATAATGAGGATGAACAAAACAAATGG TGGTATT GATGGGGATTTTGCAGTTTCTCT GGGCA TGGAGTATGTGGCTAGCAAGGGGATCGGAGAATTTACTCGCTCACTGCTGTGTGGTTTCA TTTTTGCGGGATTG TTGT TGGTTTTG TTAA AGCTTGTG GTGAGGTTGAGGACTGA GCTGAGGAATAATGGTACAACTTGGTC TTGGCA GCCA AATGATTCTGGTGACGGGAAGCTGGCTAGAGCATATCAACTTGTGTCCGCTAAGACAGACTATTGAACATCATGAGATGATAATCTTTGAGGAGCTTTAAACTGTGGCTGTTGACCTATTGTATGTAATGACATATTGCA TTACTTCAGTTGTAAGTATTGTA GTTTTACACTT TTACTCCCTTAA TGGTAAGTTTTCGGTTATTTGAGCTTGGCTAATGGAGAAAACGGTCGTGGTGTTGTATCTGGCTCAAGATAT TTGTTTGTA TTAGTACTGCTTTTAATAGCTCTATCCAGTTTG ]
[+] EMBL BI806767 [ GGGCATTGGAGTATGTGGCTAGCAAGGGGATCGGAGAATTTACTCGCTCACTGCTGTGTGGTTTCA TTTTTGCGGGATTG TTGT TGGTTTTG TTAA TGCTTGTG GTGAGGTTGAGGACTGA GCTGAGGAATAATGGTACAACTTGGTC TTGGCA GCCC AATGATTCTGGTGACGGGAAGCTGGCTAGAGCATATCAACTTGTGTCCGCTAAGACAGACTATTGAACATCATGAGATGATAATCTTTGAGGAGCTTTAAACTGTGGCTGTTGACCTATTGTATGTAATGACATATTGCA TTACTTCAGTTGTAAGTATTGTA GTTTTACACTT TTACTCCCTTAA TGGTAAGTTTTCGGTTATTTGAGCTTGGCTAATGGAGAAAACGGTCGTGGTGTTGTATCTGGCTCAAGATAT TTGTTTGTA TTAGTACTGCTTTTAATAGCTCTATCCAGTTTGTGATGCTTGAATGAATATGCCTG CATTTATCTAGTTTAAAAAAAAA]
[+] EMBL BI795914 [ c TGGAGTATGTGGCTA CAAGGGGATCGGAGAATTTGCTCGCTCACTGCTGTGTGGTTTCA TTTTTGCGGGATTG TTGT TGGTTTTG TTAA TGCTTGTG GTGAGGTTGAGGACTGA GCTGAGGAATAATGGTACAACTTGGTC TTGGCA GCCACAATGATTCTGGTGACGGGAAGCTGGCTAGAGCATATCAACTTGTGTCCGCTAAGACAGACTATTGAACATCATGAGATGATAATCTTTGAGGAGCTTTAAACTGCGGCTGTTGACCTATTGTATGTAATGACATATTGCA TTACTTCAGTTGTAAGTATTGTA GTTTTACACTT TTACTCCCTTAA TGGTAAGTTTTCGGTTATTTGAGCTTGGCTAATGGAGAAAACGGTCGTGGTGTTGTATCTGGCTCAAGATAT TTGTTTGTA TTAGTACTGCTTTTAATAGCTCTATCCAGTTTGTGATGCTTGAATGAATATGCCTGCCATTTATCTAGTTTAAAAAAAAA]
consensusID : consensus_14064#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 529 fasta sequence
[ATTGATGGGGATTCTTGCAGTTTCTCTGGGCATTGGAGTATTGTGGCTATGTCATAGGTGGATCGGAGAATTTGCTCGCTCACTGTCATGTGTGGTTTCATTTTTGCGGGATTGTTGTTGGTTTTGTTAATGCTTGTGGTGAGGTTGAGGACTGAGCATGAGGAATAATGGTACAACTTGGTCTTGGCATGCCAAATGATTCTGGTGACAGGGAAGCATGGCTAGAGCATATCAAACTTGTGTGCCGCTGAAGACAAGACTGATTGGAACATGCATGGAGATGGATAATGCTTTGGAGGAGGCTGTTGAAACTGCGGCTGGTTGGACACTGATGTGGTGATGGTGAATGACATGATTGGCAATTGACTTGCAGTGTGTGAAAGTGATTGTGAGTGTTTGACACTGTTNTGACTGCCCTTGAATGGGTGAGTGTTTGCGGNTATTTGAGCTTGGCTAATGGAGAAAACGGTCGTGGTGTTGTATCTGGCTCAAGATATTTGTTTGTATTAGTACTGCTTTTAATAAAAAA]
[+] EMBL BQ905908 [ATTGATGGGGATTCTTGCAGTTTCTCTGGGCATTGGAGTATTGTGGCTATGTCATAGGTGGATCGGAGAATTTGCTCGCTCACTGTCATGTGTGGTTTCATTTTTGCGGGATTGTTGTTGGTTTTGTTAATGCTTGTGGTGAGGTTGAGGACTGAGCATGAGGAATAATGGTACAACTTGGTCTTGGCATGCCAAATGATTCTGGTGACAGGGAAGCATGGCTAGAGCATATCAAACTTGTGTGCCGCTGAAGACAAGACTGATTGGAACATGCATGGAGATGGATAATGCTTTGGAGGAGGCTGTTGAAACTGCGGCTGGTTGGACACTGATGTGGTGATGGTGAATGACATGATTGGCAATTGACTTGCAGTGTGTGAAAGTGATTGTGAGTGTTTGACACTGTTNTGACTGCCCTTGAATGGGTGAGTGTTTGCGGNTATTTGAGCTTGGCTAATGGAGAAAACGGTCGTGGTGTTGTATCTGGCTCAAGATATTTGTTTGTATTAGTACTGCTTTTAATAAAAAA]
consensusID : consensus_14064#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 443 fasta sequence
[TAGCAAGGGGATCGGAGAATTTACTCGCTCACTGCTGTGTGGTTTCATTTTTGCGGGATTGTTGTTGGTTTTGTTAATGCTTGTGGTGAGGTTGAGGACTGAGCTGAGGAATAATGGTACAACTTGGTCTTGGCAGCCAAATGATTCTGGTGACGGGAAGCTGGCTAGAGCATATCAACTTGTGTCCGCTAAGACAGACTATTGAACATCATGAGATGATAATCTTTGAGGAGCTTTAAACTGTGGCTGTTGACCTATTGTATGTAATGACATATTGCATTACTTCAGTTGTAAGTATTGTAGTTTTACACTTTTACTCCCTTAATGGTAAGTTTTCGGTTATTTGAGCTTGGCTAATGGAGAAAACGGTCGTGGTGTTGTATCTGGCTCAANATATTTGTTTGTATTAGTACTGCTTTTAATAGCTCTAAAAAAAAAAAAAA]
[+] EMBL AU166477 [TAGCAAGGGGATCGGAGAATTTACTCGCTCACTGCTGTGTGGTTTCATTTTTGCGGGATTGTTGTTGGTTTTGTTAATGCTTGTGGTGAGGTTGAGGACTGAGCTGAGGAATAATGGTACAACTTGGTCTTGGCAGCCAAATGATTCTGGTGACGGGAAGCTGGCTAGAGCATATCAACTTGTGTCCGCTAAGACAGACTATTGAACATCATGAGATGATAATCTTTGAGGAGCTTTAAACTGTGGCTGTTGACCTATTGTATGTAATGACATATTGCATTACTTCAGTTGTAAGTATTGTAGTTTTACACTTTTACTCCCTTAATGGTAAGTTTTCGGTTATTTGAGCTTGGCTAATGGAGAAAACGGTCGTGGTGTTGTATCTGGCTCAANATATTTGTTTGTATTAGTACTGCTTTTAATAGCTCTAAAAAAAAAAAAAA]
consensusID : consensus_14064#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 165 fasta sequence
[TGGTAAGTGTGTTCGGGTTATTTGAGCTTGGGCTAATGGAGAAAACGGTCAGTGGGTGTTGTATGCTGGGCTCCAAGATATTGTGTTTGGTATTAGTACTGCTTTTAATAGCTCTATCCAGTTTGTGATGCTTGAATGAATATGCCNGCAATTTATCTAAAAAAA]
[+] EMBL BQ909220 [TGGTAAGTGTGTTCGGGTTATTTGAGCTTGGGCTAATGGAGAAAACGGTCAGTGGGTGTTGTATGCTGGGCTCCAAGATATTGTGTTTGGTATTAGTACTGCTTTTAATAGCTCTATCCAGTTTGTGATGCTTGAATGAATATGCCNGCAATTTATCTAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14064#0 CCCGGCGGACAACCACCTCCTCGCCTGCGGCGCGACGGCACCGGCCGTGCTCCCCGACGG 60
consensus_14064#3 ------------------------------------------------------------
consensus_14064#1 ------------------------------------------------------------
consensus_14064#2 ------------------------------------------------------------
consensus_14064#0 CCGACGCTTCGTCCCCGACTCCGGCTGCGCCTCCACGCGCCTCCGCTCCCCGGCACCTAC 120
consensus_14064#3 ------------------------------------------------------------
consensus_14064#1 ------------------------------------------------------------
consensus_14064#2 ------------------------------------------------------------
consensus_14064#0 CCTCCCGTCCGCGGCCTCCAGCGCGGCCCCGCAGCCGACCCCTCTCCACGCCGCCGCGCG 180
consensus_14064#3 ------------------------------------------------------------
consensus_14064#1 ------------------------------------------------------------
consensus_14064#2 ------------------------------------------------------------
consensus_14064#0 GGTCTTCTCCTGCCGCGCGTCCTACGACCTCGCCGTCCGCCGCCGCGGGTACCACGTCCT 240
consensus_14064#3 ------------------------------------------------------------
consensus_14064#1 ------------------------------------------------------------
consensus_14064#2 ------------------------------------------------------------
consensus_14064#0 GCGCCTCCACTTCTACCCCTTCGAGCCCGCGCTCGCGTCCGCGCGCTTCCACGTCGGCGC 300
consensus_14064#3 ------------------------------------------------------------
consensus_14064#1 ------------------------------------------------------------
consensus_14064#2 ------------------------------------------------------------
consensus_14064#0 CGCCGGATTCCTCCTCCTCCACAACTTCTCCGCGTCGGCCCCCGTCGTGAAGGAGTTCAT 360
consensus_14064#3 ------------------------------------------------------------
consensus_14064#1 ------------------------------------------------------------
consensus_14064#2 ------------------------------------------------------------
consensus_14064#0 CCTACCCGTCCACTCCGACGTCCTCGTCCTCACCTTCGTCCCCGAGTCGGGCTCTAACGC 420
consensus_14064#3 ------------------------------------------------------------
consensus_14064#1 ------------------------------------------------------------
consensus_14064#2 ------------------------------------------------------------
consensus_14064#0 CTTCGTCAACGCCATCGAGCTCGTCTCGGCCCCCGATGAGCTCGTCGGCGACATCGGCAC 480
consensus_14064#3 ------------------------------------------------------------
consensus_14064#1 ------------------------------------------------------------
consensus_14064#2 ------------------------------------------------------------
consensus_14064#0 CCTCGTCACGAGCAGCGGCACTGACCAGACCAATGGATTGTCGTCTCAGGTCTATGAGAT 540
consensus_14064#3 ------------------------------------------------------------
consensus_14064#1 ------------------------------------------------------------
consensus_14064#2 ------------------------------------------------------------
consensus_14064#0 GCTCTATCGGATCAACGTCGCCGGCCGCAAGGTCACACCGTTCAACGACACGCTGTGGCG 600
consensus_14064#3 ------------------------------------------------------------
consensus_14064#1 ------------------------------------------------------------
consensus_14064#2 ------------------------------------------------------------
consensus_14064#0 AACATGGGTCAACGACGAGCGCTTCCTCGTCAGCACGGAATCATCCAACAGCGGGGTCTG 660
consensus_14064#3 ------------------------------------------------------------
consensus_14064#1 ------------------------------------------------------------
consensus_14064#2 ------------------------------------------------------------
consensus_14064#0 GTCGTTCGGTGGCCGGATTGCTTATCCCAAGGGTAGCAGATTGATGACACGGGAGGTTGC 720
consensus_14064#3 ------------------------------------------------------------
consensus_14064#1 ------------------------------------------------------------
consensus_14064#2 ------------------------------------------------------------
consensus_14064#0 TCCTGACAACGTGTACAACTCGGCGAGGTCAGTGAGCTCACAGGGCAAAGTGACATGGGG 780
consensus_14064#3 ------------------------------------------------------------
consensus_14064#1 ------------------------------------------------------------
consensus_14064#2 ------------------------------------------------------------
consensus_14064#0 ATTTCCCGTGCCTGCTTCCAGCAGGTACCTAGTGCGTATGCACTTCTGTGACATCGTGAG 840
consensus_14064#3 ------------------------------------------------------------
consensus_14064#1 ------------------------------------------------------------
consensus_14064#2 ------------------------------------------------------------
consensus_14064#0 CAAGGCTCTAAATGAGCTTTACTTTGATATCTATGTCAATGGTCAGCTAGCAGTAAAGGA 900
consensus_14064#3 ------------------------------------------------------------
consensus_14064#1 ------------------------------------------------------------
consensus_14064#2 ------------------------------------------------------------
consensus_14064#0 TTTCGATATCTCTGGTGCCACTGGATTCTTAGCCTATCCATATTACATCGACTTTGTTGT 960
consensus_14064#3 ------------------------------------------------------------
consensus_14064#1 ------------------------------------------------------------
consensus_14064#2 ------------------------------------------------------------
consensus_14064#0 GGATGTTGAGGATGAAGGGGCCCTGAAATTGGCCATTGGTGGCTCGAAGAATAGCCGATC 1020
consensus_14064#3 ------------------------------------------------------------
consensus_14064#1 ------------------------------------------------------------
consensus_14064#2 ------------------------------------------------------------
consensus_14064#0 AGACGAAGTGAGCGGTATTCTTAATGCTGTAGAGATAATGAGGATGAACAAAACAAATGG 1080
consensus_14064#3 ------------------------------------------------------------
consensus_14064#1 ----------ATTGATGGGGATTCTTGCAGTTTCTCTGGGCATTGGAGTATTGTGGCTAT 50
consensus_14064#2 ------------------------------------------------------------
consensus_14064#0 TGGTATTGATGGGGATTTTGCAGTTTCTCTGGGCATGGAGTATGTGGCTAGCAAGGGGAT 1140
consensus_14064#3 ------------------------------------------------------------
consensus_14064#1 GTCATAGGTGGATCGGAGAATTTGCTCGCTCACTGTCATGTGTGGTTTCATTTTTGCGGG 110
consensus_14064#2 -TAGCAAGGGGATCGGAGAATTTACTCGCTCACTGC--TGTGTGGTTTCATTTTTGCGGG 57
consensus_14064#0 CGGAGAATTTACTCGCTCACTGCTGTGTGGTTTCATTTTTGCGGGATTGTTGTTGGTTTT 1200
consensus_14064#3 ------------------------------------------------------------
consensus_14064#1 ATTGTTGTTGGTTTTGTTAATGCTTGTGGTGAGGTTGAGGACTGAGCATGAGGAATAATG 170
consensus_14064#2 ATTGTTGTTGGTTTTGTTAATGCTTGTGGTGAGGTTGAGGACTGAGC-TGAGGAATAATG 116
consensus_14064#0 GTTAATGCTTGTGGTGAGGTTGAGGACTGAGCTGAGGAATAATGGTACAACTTGGTCTTG 1260
consensus_14064#3 ------------------------------------------------------------
consensus_14064#1 GTACAACTTGGTCTTGGCATGCCAAATGATTCTGGTGACAGGGAAGCATGGCTAGAGCAT 230
consensus_14064#2 GTACAACTTGGTCTTGGCA-GCCAAATGATTCTGGTGAC-GGGAAGC-TGGCTAGAGCAT 173
consensus_14064#0 GCAGCCAAATGATTCTGGTGACGGGAAGCTGGCTAGAGCATATCAACTTGTGTCCGCTAA 1320
consensus_14064#3 ------------------------------------------------------------
consensus_14064#1 ATCAAACTTGTGTGCCGCTGAAGACAAGACTGATTGGAACATGCATGGAGATGGATAATG 290
consensus_14064#2 ATCAA-CTTGTGT-CCGCT-AAGACA-GACTATT--GAACAT-CATG-AGATG-ATAAT- 223
consensus_14064#0 GACAGACTATTGAACATCATGAGATGATAATCTTTGAGGAGCTTTAAACTGTGGCTGTTG 1380
consensus_14064#3 ------------------------------------------------------------
consensus_14064#1 CTTTGGAGGAGGCTGTTGAAACTGCGGCTGGTTGGACACTGATGTGGTGATGGTGAATGA 350
consensus_14064#2 -CTTTGAGGAGC---TTTAAACTGTGGCTG--------TTGACCTATTGTATGT-AATGA 270
consensus_14064#0 ACCTATTGTATGTAATGACATATTGCATTACTTCAGTTGTAAGTATTGTAGTTTTACACT 1440
consensus_14064#3 ------------------------------------------------------------
consensus_14064#1 CATGATTGGCAATTGACTTGCAGTGTGTGAAAGTGATTGTGAGTGTTTGACACTGTTNTG 410
consensus_14064#2 CATATT--GCATT--ACTT-CAGT---TGTAAGT-ATTGTA---GTTTTACACTTTTAC- 317
consensus_14064#0 TTTACTCCCTTAATGGTAAGT---TTTCGGTTATTTGAGCTTGG-CTAATGGAGAAAACG 1496
consensus_14064#3 -------------TGGTAAGTGTGTTCGGGTTATTTGAGCTTGGGCTAATGGAGAAAACG 47
consensus_14064#1 ACTGCCCTTGAATGGGTGAGTGT-TTGCGGNTATTTGAGCTTGG-CTAATGGAGAAAACG 468
consensus_14064#2 ----TCCCTTAATGG-TAAGT---TTTCGGTTATTTGAGCTTGG-CTAATGGAGAAAACG 368
* * *** ** ** ************* ***************
consensus_14064#0 GTCGT--GGTGTTGTAT-CTGG--CTCAAGATATT-TGTTTG-TATTAGTACTGCTTTTA 1549
consensus_14064#3 GTCAGTGGGTGTTGTATGCTGGGCTCCAAGATATTGTGTTTGGTATTAGTACTGCTTTTA 107
consensus_14064#1 GTCGT--GGTGTTGTAT-CTGG--CTCAAGATATT-TGTTTG-TATTAGTACTGCTTTTA 521
consensus_14064#2 GTCGT--GGTGTTGTAT-CTGG--CTCAANATATT-TGTTTG-TATTAGTACTGCTTTTA 421
*** ********** **** *** ***** ****** *****************
consensus_14064#0 ATAGCTCTATCCAGTTTGTGATGCTTGAATGAATATGCCTGCATTTATCTAGTTTAAAAA 1609
consensus_14064#3 ATAGCTCTATCCAGTTTGTGATGCTTGAATGAATATGCCNGCA---ATTTA-TCTAAAAA 163
consensus_14064#1 ATA-----AAAAA----------------------------------------------- 529
consensus_14064#2 ATAGCTCTAAAAAAAAAAAAAA-------------------------------------- 443
*** * *
consensus_14064#0 AAAA 1613
consensus_14064#3 AA-- 165
consensus_14064#1 ----
consensus_14064#2 ----
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||