These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14067#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1755 fasta sequence [ATCGCAAGCTGGAGCAGCGAGCACCGTAGCAGCAGCAGCAGCAGCCTCCTGGTACACACTGCACTACACAGCGCAGCAGCTAGCGATAGTGTATCGCACTTACTGGATACGCAGTCGAGCATCTCCAGCAGCAGCAGCAGCGGAGTGATCAGCGATGGAGAGCAGCTTGGTCGACACAGCCGCCGCCACTCTCTGCCTGGCGGCGGCCGTCGGCGGGCGGCGCCGCGCCGGCAGCTTCTTGAACTGCTCGTGCTCCTCCAAAGAGTACAGGGTGAGCGCATCCTACTCCATTGGGCGGATGCTGAGCGGGGTGAGGTCGGCGGCGCGCAAGAAGCTGTTCAGGAGCGAGCCGGCCGACCTGCTGGGGATCAGCTGGTCGCCGGACTCGCCGCCGTCGAACGGCACCGACGGCGGCCACCACCACCATTGGTGGACGGCTCTCGAGAACAACTTCGTCCTCGAGTCCTCCGAGGACGAGTACGGCGGGGTCGTCGTGGACGCCGACAGGCTGCCGTCCGACAAGGCCGCCTTCGCGCGCTCGCTCGCGGCGTCACTCTCCTACTGGAAGTCCGTGGGAAAGAAAGGGGTTTGGCTAAAGTTACCAGTGGATCGCTCAGAGTTTGTTCCTATAGCAGTGAAGGAAGGTTTCAAGTACCACCATGCCGAGGAAGCATATGTGATGCTGACATACTGGATTCCTCATGAAGAGCCAT-GTATGCTCCCTGCAAATGCATCTCACCAGGTTGGAGTT-GGGGGGTTTGTGATCAACGATCAAATGGAGGTCCTAGTGGTGCAAGAAAAGTACTGTGGTTCATCTTTGGATGGTGCTTGGAAACTCCCCACAGGGTTCATTCTTGCGTCGGAGGAAATATTTACAGGAGCTACTAGAGAAGTCAAGGAAGAAACTGGGGTTGACACTGAATTTGTGGACGTTGTTGCTTTTAGGCATGCACACAACGTGGCATTTCAGAAGTCCGACCTGTTCTTCATCTGCATGCTAAGGCCTACATCAAACAATATCAAAATCGACGAAACAGAGATTCAGGCAGCGAAGTGGATGCCGCTGGAGGAGTTCGTCAAGCAGCCGTTCATCCAGGGGGACCACATGTTCCAGAAGATCATGGACATCTGCATCCAGAGGCTCAGGAAGTGCTACTGCGGCCTGACCG--CGCACAACGTCAT-CTCCAGGTTCGACGG-CAGGAGGTCGACGCTGTACTACAACG-TTTCTGAACCTGA-GGATGTG-AACTG-CAATGC-TTCTTGACAACGGATCGCCCAACCTTCCGTCAGGTTCGCGTTGTGATCTAGCATTAGGCTCTGTGCAATGCAGTGCAGAGTCTCGAGTACAGCGACCTGGGTAACTGCTTGTGAAGCAGAAATCCTCTGTAAATATGAAAAGAAGATAGGATTTATGGCAGGTCGGGTAGCTCTGACCGGCTGTTGCAGTTTCACGTAGATTGCAGCTGAACTGAAGAAGATCTTGAAGACTTTTCAGAAAATTTCGTTTCTGTGTATGCGCTCACGCTAAGCAGCTGCTTAATGTGTATCTAGTGTTGCTATGGCGAAAGCAAAGGACACGTACACACCAAGAACCAGGACACTAGTAGGATGTGATTGCGCTCCGAGTTCTGCACTTACGCGAACAGTGTGCCAAAATTTAGGTACTTGCAACATTGCAAGTATCAAATGTGTATGCAACCCCTTCTTTGCGCGTGCAAAGTATAATTGAAGAACCTCCTGAATGTCTCATCACTAAAA] [+] EMBL AK065996 [ATCGCAAGCTGGAGCAGCGAGCACCGTAGCAGCAGCAGCAGCAGCCTCCTGGTACACACTGCACTACACAGCGCAGCAGCTAGCGATAGTGTATCGCACTTACTGGATACGCAGTCGAGCATCTCCAGCAGCAGCAGCAGCGGAGTGATCAGCGATGGAGAGCAGCTTGGTCGACACAGCCGCCGCCACTCTCTGCCTGGCGGCGGCCGTCGGCGGGCGGCGCCGCGCCGGCAGCTTCTTGAACTGCTCGTGCTCCTCCAAAGAGTACAGGGTGAGCGCATCCTACTCCATTGGGCGGATGCTGAGCGGGGTGAGGTCGGCGGCGCGCAAGAAGCTGTTCAGGAGCGAGCCGGCCGACCTGCTGGGGATCAGCTGGTCGCCGGACTCGCCGCCGTCCAACGGCACCGACGGCGGCCACCACCACCATTGGTGGACGGCTCTCGAGAACAACTTCGTCCTCGAGTCCTCCGAGGACGAGTACGGCGGGGTCGTCGTGGACGCCGACAGGCTGCCGTCCGACAAGGCCGCCTTCGCGCGCTCGCTCGCGGCGTCACTCTCCTACTGGAAGTCCGTGGGAAAGAAAGGGGTTTGGCTAAAGTTACCAGTGGATCGCTCAGAGTTTGTTCCTATAGCAGTGAAGGAAGGTTTCAAGTACCACCATGCCGAGGAAGCATATGTGATGCTGACATACTGGATTCCTCATGAAGAGCCAT GTATGCTCCCTGCAAATGCATCTCACCAGGTTGGAGTT GGGGGGTTTGTGATCAACGATCAAATGGAGGTCCTAGTGGTGCAAGAAAAGTACTGTGGTTCATCTTTGGATGGTGCTTGGAAACTCCCCACAGGGTTCATTCTTGCGTCGGAGGAAATATTTACAGGAGCTACTAGAGAAGTCAAGGAAGAAACTGGGGTTGACACTGAATTTGTGGACGTTGTTGCTTTTAGGCATGCACACAACGTGGCATTTCAGAAGTCCGACCTGTTCTTCATCTGCATGCTAAGGCCTACATCAAACAATATCAAAATCGACGAAACAGAGATTCAGGCAGCGAAGTGGATGCCGCTGGAGGAGTTCGTCAAGCAGCCGTTCATCCAGGGGGACCACATGTTCCAGAAGATCATGGACATCTGCATCCAGAGGCTCAGGAAGTGCTACTGCGGCCTGACCG CGCACAACGTCAT CTCCAGGTTCGACGG CAGGAGGTCGACGCTGTACTACAACG TTTCTGAACCTGA GGATGTG AACTG CAATGC TTCTTGACAACGGATCGCCCAACCTTCAGTCAGGTTCGCGTTGTGATCTAGCATTAGGCTCTGTGCAATGCAGTGCAGAGTCTCGAGTACAGCGACCTGGGTAACTGCTTGTGAAGCAGAAATCCTCTGTAAATATGAAAAGAAGATAGGATTTATGGCAGGTCGGGTAGCTCTGACCGGCTGTTGCAGTTTCACGTAGATTGCAGCTGAACTGAAGAAGATCTTGAAGACTTTTCAGAAAATTTCGTTTCTGTGTATGCGCTCACGCTAAGCAGCTGCTTAATGTGTATCTAGTGTTGCTATGGCGAAAGCAAAGGACACGTACACACCAAGAACCAGGACACTAGTAGGATGTGATTGCGCTCCGAGTTCTGCACTTACGCGAACAGTGTGCCAAAATTTAGGTACTTGCAACATTGCAAGTATCAAATGTGTATGCAACCCCTTCTTTGCGCGTGCAAAGTATAATTGAAGAACCTCC ] [+] EMBL AK060404 [ CAAGCTGGAGCAGCGAGCACCGTAGCAGCAGCAGCAGCAGCCTCCTGGTACACACTGCACTACACAGCGCAGCAGCTAGCGATAGTGTATCGCACTTACTGGATACGCAGTCGAGCATCTCCAGCAGCAGCAGCAGCGGAGTGATCAGCGATGGAGAGCAGCTTGGTCGACACAGCCGCCGCCACTCTCTGCCTGGCGGCGGCCGTCGGCGGGCGGCGCCGCGCCGGCAGCTTCTTGAACTGCTCGTGCTCCTCCAAAGAGTACAGGGTGAGCGCATCCTACTCCATTGGGCGGATGCTGAGCGGGGTGAGGTCGGCGGCGCGCAAGAAGCTGTTCAGGAGCGAGCCGGCCGACCTGCTGGGGATCAGCTGGTCGCCGGACTCGCCGCCGTCGAACGGCACCGACGGCGGCCACCACCACCATTGGTGGACGGCTCTCGAGAACAACTTCGTCCTCGAGTCCTCCGAGGACGAGTACGGCGGGGTCGTCGTGGACGCCGACAGGCTGCCGTCCGACAAGGCCGCCTTCGCGCGCTCGCTCGCGGCGTCACTCTCCTACTGGAAGTCCGTGGGAAAGAAAGGGGTTTGGCTAAAGTTACCAGTGGATCGCTCAGAGTTTGTTCCTATAGCAGTGAAGGAAGGTTTCAAGTACCACCATGCCGAGGAAGCATATGTGATGCTGACATACTGGATTCCTCATGAAGAGCCAT GTATGCTCCCTGCAAATGCATCTCACCAGGTTGGAGTT GGGGGGTTTGTGATCAACGATCAAATGGAGGTCCTAGTGGTGCAAGAAAAGTACTGTGGTTCATCTTTGGATGGTGCTTGGAAACTCCCCACAGGGTTCATTCTTGCGTCGGAGGAAATATTTACAGGAGCTACTAGAGAAGTCAAGGAAGAAACTGGGGTTGACACTGAATTTGTGGACGTTGTTGCTTTTAGGCATGCACACAACGTGGCATTTCAGAAGTCCGACCTGTTCTTCATCTGCATGCTAAGGCCTACATCAAACAATATCAAAATCGACGAAACAGAGATTCAGGCAGCGAAGTGGATGCCGCTGGAGGAGTTCGTCAAGCAGCCGTTCATCCAGGGGGACCACATGTTCCAGAAGATCATGGACATCTGCATCCAGAGGCTCAGGAAGTGCTACTGCGGCCTGACCG CGCACAACGTCAT CTCCAGGTTCGACGG CAGGAGGTCGACGCTGTACTACAACG TTTCTGAACCTGA GGATGTG AACTG CAATGC TTCTTGACAACGGATCGCCCAACCTTCCGTCAGGTTCGCGTTGTGATCTAGCATTAGGCTCTGTGCAATGCAGTGCAGAGTCTCGAGTACAGCGACCTGGGTAACTGCTTGTGAAGCAGAAATCCTCTGTAAATATGAAAAGAAGATAGGATTTATGGCAGGTCGGGTAGCTCTGACCGGCTGTTGCAGTTTCACGTAGATTGCAGCTGAACTGAAGAAGATCTTGAAGACTTTTCAGAAAATTTCGTTTCTGTGTATGCGCTCACGCTAAGCAGCTGCTTAATGTGTATCTAGTGTTGCTATGGCGAAAGCAAAGGACA ] [+] EMBL CB655966 [ CTGGAGCAGCGAGCACCGTAGCAGCAGCAGCAGCAGCCTCCTGGTACACACTGCACTACACAGCGCAGCAGCTAGCGATAGTGTATCGCACTTACTGGATACGCAGTCGAGCATCTCCAGCAGCAGCAGCAGCGGAGTGATCAGCGATGGAGAGCAGCTTGGTCGACACAGCCGCCGCCACTCTCTGCCTGGCGGCGGCCGTCGGCGGGCGGCGCCGCGCCGGCAGCTTCTTGAACTGCTCGTGCTCCTCCAAAGAGTACAGGGTGAGCGCATCCTACTCCATTGGGCGGATGCTGAGCGGGGTGAGGTCGGCGGCGCGCAAGAAGCTGTTCAGGAGCGAGCCGGCCGACCTGCTGGGGATCAGCTGGTCGCCGGACTCGCCGCCGTCGAACGGCACCGACGGCGGCCACCACCACCATTGGTGGACGGCTCTCGAGAACAACTTCGTCCTCGAGTCCTCCGAGGACGAGTACGGCGGGGTCGTCGTGGACGCCGACAGGCTGCCGTCCGACAAGGCCGCCTTCGCGCGCTCGCTCGCGGCGTCACTCTCCTACTGGAAGTCCGTGGGAAAGAAAGGGGTTTGGCTAAAGTTACCAGTGGATCGCTCAGAGTTTGTTCCTATAGCAGTGAAGGAAGGTTTCAAGTACCACCATGCCGAGGAAGCATATGTGATGCTGACATACTGGATTCCTCATGAAGAGCCAT GTATGCTCCCTGCAAATGCATCTCACCAGGTTGGAGTT GGGGGGTTTGTGATCAACG ] [+] EMBL CB662308 [ AGCAGCGAGCACCGTAGCAGCAGCAGCAGCAGCCTCCTGGTACACACTGCACTACACAGCGCAGCAGCTAGCGATAGTGTATCGCACTTACTGGATACGCAGTCGAGCATCTCCAGCAGCAGCAGCAGCGGAGTGATCAGCGATGGAGAGCAGCTTGGTCGACACAGCCGCCGCCACTCTCTGCCTGGCGGCGGCCGTCGGCGGGCGGCGCCGCGCCGGCAGCTTCTTGAACTGCTCGTGCTCCTCCAAAGAGTACAGGGTGAGCGCATCCTACTCCATTGGGCGGATGCTGAGCGGGGTGAGGTCGGCGGCGCGCAAGAAGCTGTTCAGGAGCGAGCCGGCCGACCTGCTGGGGATCAGCTGGTCGCCGGACTCGCCGCCGTCGAACGGCACCGACGGCGGCCACCACCACCATTGGTGGACGGCTCTCGAGAACAACTTCGTCCTCGAGTCCTCCGAGGACGAGTACGGCGGGGTCGTCGTGGACGCCGACAGGCTGCCGTCCGACAAGGCCGCCTTCGCGCGCTCGCTCGCGGCGTCACTCTCCTACTGGAAGTCCGTGGGAAAGAAAGGGGTTTGGCTAAAGTTACCAGTGGATCGCTCAGAGTTTGTTCCTATAGCAGTGAAGGAAGGTTTCAAGTACCACCATGCCGAGGAAGCATATGTGATGCTGACATACTGGATTCCTCATGAAGAGCCATGGTATGCTCCCTGCA ] [+] EMBL CB664534 [ AGCAGCGAGCACCGTAGCAGCAGCAGCAGCAGCCTCCTGGTACACACTGCACTACACAGCGCAGCAGCTAGCGATAGTGTATCGCACTTACTGGATACGCAGTCGAGCATCTCCAGCAGCAGCAGCAGCGGAGTGATCAGCGATGGAGAGCAGCTTGGTCGACACAGCCGCCGCCACTCTCTGCCTGGCGGCGGCCGTCGGCGGGCGGCGCCGCGCCGGCAGCTTCTTGAACTGCTCGTGCTCCTCCAAAGAGTACAGGGTGAGCGCATCCTACTCCATTGGGCGGATGCTGAGCGGGGTGAGGTCGGCGGCGCGCAAGAAGCTGTTCAGGAGCGAGCCGGCCGACCTGCTGGGGATCAGCTGGTCGCCGGACTCGCCGCCGTCGAACGGCACCGACGGCGGCCACCACCACCATTGGTGGACGGCTCTCGAGAACAACTTCGTCCTCGAGTCCTCCGAGGACGAGTACGGCGGGGTCGTCGTGGACGCCGACAGGCTGCCGTCCGACAAGGCCGCCTTCGCGCGCTCGCTCGCGGCGTCACTCTCCTACTGGAAGTCCGTGGGAAAGAAAGGGGTTTGGCTAAAGTTACCAGTGGATCGCTCAGAGTTTGTTCCTATAGCAGTGAAGGAAGGTTTCAAGTACCACCATGCCGAGGAAGCATATGTGATGCTGACATACTGGATTCCTCATGAAGAGCCAT GTATGCTCCCTGCAAATGCATCTCACCAGGTTGGAGTTGGGGGGGTTTGTGATCAACGATCAAA ] [+] EMBL CB647098 [ AGCAGCGAGCACCGTAGCAGCAGCAGCAGCAGCCTCCTGGTACACACTGCACTACACAGCGCAGCAGCTAGCGATAGTGTATCGCACTTACTGGATACGCAGTCGAGCATCTCCAGCAGCAGCAGCAGCGGAGTGATCAGCGATGGAGAGCAGCTTGGTCGACACAGCCGCCGCCACTCTCTGCCTGGCGGCGGCCGTCGGCGGGCGGCGCCGCGCCGGCAGCTTCTTGAACTGCTCGTGCTCCTCCAAAGAGTACAGGGTGAGCGCATCCTACTCCATTGGGCGGATGCTGAGCGGGGTGAGGTCGGCGGCGCGCAAGAAGCTGTTCAGGAGCGAGCCGGCCGACCTGCTGGGGATCAGCTGGTCGCCGGACTCGCCGCCGTCGAACGGCACCGACGGCGGCCACCACCACCATTGGTGGACGGCTCTCGAGAACAACTTCGTCCTCGAGTCCTCCGAGGACGAGTACGGCGGGGTCGTCGTGGACGCCGACAGGCTGCCGTCCGACAAGGCCGCCTTCGCGCGCTCGCTCGCGGCGTCACTCTCCTACTGGAAGTCCGTGGGAAAGAAAGGGGTTTGGCTAAAGTTACCAGTGGATCGCTCAGAGTTTGTTCCTATAGCAGTGAAGGAAGGTTTCAAGTACCACCATGCCGAGGAAGCATATGTGATGCTGACATACTGGATTCCTCATGAAGAGCCAT GTATGCTCCCTGCAAATGCATCTCACCAGGTTGGAGTT G ] [+] EMBL CB653442 [ AGCAGCGAGCACCGTAGCAGCAGCAGCAGCAGCCTCCTGGTACACACTGCACTACACAGCGCAGCAGCTAGCGATAGTGTATCGCACTTACTGGATACGCAGTCGAGCATCTCCAGCAGCAGCAGCAGCGGAGTGATCAGCGATGGAGAGCAGCTTGGTCGACACAGCCGCCGCCACTCTCTGCCTGGCGGCGGCCGTCAGCGGGCGGCGCCGCGCCGGCAGCTTCTTGAACTGCTCGTGCTCCTCCAAAGAGTACAGGGTGAGCGCATCCTACTCCATTGGGCGGATGCTGAGCGGGGTGAGGTCGGCGGCGCGCAAGAAGCTGTTCAGGAGCGAGCCGGCCGACCTGCTGGGGATCAGCTGGTCGCCGGACTCGCCGCCGTCGAACGGCACCGACGGCGGCCACCACCACCATTGGTGGACGGCTCTCGAGAACAACTTCGTCCTCGAGTCCTCCGAGGACGAGTACGGCGGGGTCGTCGTGGACGCCGACAGGCTGCCGTCCGACAAGGCCGCCTTCGCGCGCTCGCTCGCGGCGTCACTCTCCTACTGGAAGTCCGTGGGAAAGAAAGGGGTTTGGCTAAAGTTACCAGTGGATCGCTCAGAGTTTGTTCCTATAGCAGTGAAGGAAGGTTTCAAGTACCACCATGCCGAGGAAGCATATGTGATGCTGACATACTGGATTCCTCATGAAGAGCCAT GTATGCTCCCTGCAA ] [+] EMBL CB649412 [ TCGAGCATCTCCAGCAGCAGCAGCAGCGGAGTGATCAGCGATGGAGAGCAGCTTGGTCGACACAGCCGCCGCCACTCTCTGCCTGGCGGCGGCCGTCGGCGGGCGGCGCCGCGCCGGCAGCTTCTTGAACTGCTCGTGCTCCTCCAAAGAGTACAGGGTGAGCGCATCCTACTCCATTGGGCGGATGCTGAGCGGGGTGAGGTCGGCGGCGCGCAAGAAGCTGTTCAGGAGCGAGCCGGCCGACCTGCTGGGGATCAGCTGGTCGCCGGACTCGCCGCCGTCGAACGGCACCGACGGCGGCCACCACCACCATTGGTGGACGGCTCTCGAGAACAACTTCGTCCTCGAGTCCTCCGAGGACGAGTACGGCGGGGTCGTCGTGGACGCCGACAGGCTGCCGTCCGACAAGGCCGCCTTCGCGCGCTCGCTCGCGGCGTCACTCTCCTACTGGAAGTCCGTGGGAAAGAAAGGGGTTTGGCTAAAGTTACCAGTGGATCGCTCAGAGTTTGTTCCTATAGCAGTGAAGGAAGGTTTCAAGTACCACCATGCCGAGGAAGCATATGTGATGCTGACATACTGGATTCCTCATGAAGAGCCAT GTATGCTCCCTGCAAATGCATCTCACCAGGTTGGAGTT GGGG ] [-] EMBL CB653443 [ CCAGTGGATCGCTCAGAGTTTGTTCCTATAGCAGTGAAGGAAGGTTTCAAGTACCACCATGCCGAGGAAGCATATGTGATGCTGACATACTGGATTCCTCATGAAGAGCCAT GTATGCTCCCTGCAAATGCATCTCACCAGGTTGGAGTT GGGGGGTTTGTGATCAACGATCAAATGGAGGTCCTAGTGGTGCAAGAAAAGTACTGTGGTTCATCTTTGGATGGTGCTTGGAAACTCCCCACAGGGTTCATTCTTGCGTCGGAGGAAATATTTACAGGAGCTACTAGAGAAGTCAAGGAAGAAACTGGGGTTGACACTGAATTTGTGGACGTTGTTGCTTTTAGGCATGCACACAACGTGGCATTTCAGAAGTCCGACCTGTTCTTCATCTGCATGCTAAGGCCTACATCAAACAATATCAAAATCGACGAAACAGAGATTCAGGCAGCGAAGTGGATGCCGCTGGAGGAGTTCGTCAAGCAGCCGTTCATCCAGGGGGACCACATGTTCCAGAAGATCATGGACATCTGCATCCAGAGGCTCAGGAAGTGCTACTGCGGCCTGACCG CGCACAACGTCAT CTCCAGGTTCGACGG CAGGAGGTCGACGCTGTACTACAACG TTTCTGAACCTGA GGATGTG AACTG CAATGC TTCTTGACAACGGATCGCCCAACCTTCCGTCAGGTTCGCGTTGTGATCTAGCATTAGGCTCTGTGCAAaacgg ] [+] EMBL CA754274 [ GTGCAAGAAAAGTACTGTGGTTCATCTTTGGATGGTGCTTGGAAACTCCCCACAGGGTTCATTCTTGCGTCGGAGGAAATATTTACAGGAGCTACTAGAGAAGTCAAGGAAGAAACTGGGGTTGACACTGAATTTGTGGACGTTGTTGCTTTTAGGCATGCACACAACGTGGCATTTCAGAAGTCCGACCTGTTCTTCATCTGCATGCTAAGGCCTACATCAAACAATATCAAAATCGACGAAACAGAGATTCAGGCAGCGAAGTGGATGCCGCTGGAGGAGTTCGTCAAGCAGCCGTTCATCCAGGGGGACCACATGTTCCAGAAGATCATGGACATCTGCATCCAGAGGCTCAGGAAGTGCTACTGCGGCCTGACCG CGCACAACGTCAT CTCCAGGTTCGACGG CAGGAGGTCGACGCTGTACTACAACG TTTCTGAACCTGA GGATGTG AACTG CAATGC TTCTTGACAACGGATCGCCCCACCTTCCGTCAGGTTCGCGTTGTGATCTAGCATTAGGCTCTGTGCAATGCAGTGCAGAGTCTCGAGTACAGCGACCTGGGT ACTGCTTGTGAAGCA CAATCCTCTGTTAATATGA ] [-] EMBL CB664535 [ TTTTAGGCATGCACACAACGTGGCATTTCAGAAGTCCGACCTGTTCTTCATCTGCATGTTAAGGCCTACATCAAACAATATCAAAATCGACGAAACAGAGATTCAGGCAGCGAAGTGGATGCCGCTGGAGGAGTTCTTCAAGCAGCCGTTCATCCAGGGGGACCACATGTTCCAGAAGATCATGGACATCTGCATCCAGAGGCTCAGGAAGTGTTACTGCGGCCTGACCG CGCACAACGTCAT CTCCAGGTTAGACGG CAGGAGGTAGACGCTGTACTACAACG TTTCTGAACCTGA GGATGTG AACTG CAATGC TTCTTGACAACGGATCGCCCAACCTTCCGTCAGGTTCGCGTTGTGATATAGCATTAGGCTTTGTGCAATGCAGTGCAGAGTCTTGAGTACAGCGACCTGGGTAACTGCTTGTGAAGCAGAAATCCTCTGTAAATATGAAAAGAAGATAGGATTTATGGCAGGTCGGGTAGATCTGACCGGCTGTTGCAGTTTCACGTAGATTGCAGATGAACTGAAGAAGATCTTGAAGACTTTTCAGAAAATTTCGTTTCTGTGTATGCGCTCACGCTAAGCAGCTGCTTAATGTGTATCTAGTGTTGCTATGGCGAAAGCAAAGGACACGTACACACCAAGAACCAGGACACTAGTAGGATGTGATTGCGCTCCGAGTTCTGCACTTACGCGAACAGTGTGCCAAAATTTAGGTACTTGCAACATTGCAAGTATCAAATGTGTATGCAACCCCTTCTTTGCGCGAGGGAAGTATAATTGAAGAACCTCCTGAATGTCTCA ] [+] EMBL BI805954 [ GCATCCAGA GCTCAGGAATTGCTTAT CCGCCTGACCGGNNGCACAACGTCNTNTTCCAGGTTCGACGGCCAGGAGGTCTACCCTGTACTACAACGTTTTCTGAACCTGAGGGATGTGAAACTGCCAATGCTTTCTTGACAACGGTTCGCCCAACCTTCCGTCAGGTTCGC TTGTGATCTAGCATTAGGCTCTGTGCAATCCAGTGCAGAGTCTCGAGTACAGCGACCTGGGTAACTGCTTGTGAAGCAGAAATCCTCTGTAAATATGAAAAGAAGATAGGATTTATGGCAGGTCGGGTAGCTCTGACCGGCTGTTGCAGTTTCACGTAGATTGCAGCTGAACTGAAGAAGATCTTGAAGACTTTTCAGAAAATTTCGTTTCTGTGTATGCGCTCACGCTAAGCAGCTGCTTAATGTGTATCTAGTGTTGCTATGGCGAAAGC AAGGACACGTACACACCAAGAACCAGGACACTAGTAGGATGTGATTGCGCTCCGAGTTCTGCACTTACGCGAACAGTGTGCC AAATTTAGGTACTTGCAACATTGCAAGTATCAAATGTGTATGCAACCCCTTCTTTGCGCGTGC AAGTATAATTGAAGAACCTCCTGAATGTCTCATCACTAAAA] consensusID : consensus_14067#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 813 fasta sequence [TCCTTGGAACAGTTTAACTGAAAGAGTTTGTGCGTCTGACTGTATTCTCAACAATTGAATAGGTCCTAGTGGTGCAAGAAAAGTACTGTGGTTCATCTTTGGATGGTGCTGNGAAACTCCCCACAGGGTTCATTCTTGCGTCGGAGGAAATATTTACAGGAGCTACTAGAGAAGTCAAGGAAGAAACTGGGGTTGACACTGAATTTGTGGACGTTGTTGCTTTTAGGCATGCACACAACGTGGCATTTCAGAAGTCCGACCTGTTCTTCATCTGCATGCTAAGGCCTACATCAAACAATATCAAAATCGACGAAACAGAGATTCAGGCAGCGAAGTGGATGCCGCTGGAGGAGTTCGTCAAGCAGCCGTTCATCCAGGGGGACCACATGTTCCAGAAGATCATGGACATCTGCATCCAGAGGCTCAGGAAGTGCTACTGCGGCCTGACCGCGCACAACGTCATCTCCAGGTTCGACGGCAGGAGGTCGACGCTGTACTACAACGTTTCTGAACCTGAGGATGTGAACTGCAATGCTTCTTGACAACGGATCGCCCAACCTTCCGTCAGGTTCGCGTTGTGATCTAGCATTAGGCTCTGTGCAATGCAGTGCAGAGTCTCGAGTACAGCGACCTGGGTAACTGCTTGTGAAGCAGAAATCCTCTGTAAATATGAAAAGAAGATAGGATTTATGGCAGGTCGGGTAGCTCTGACCGGCTGTTGCAGTTTCACGTAGATTGCAGCTGAACTGAAGAAGATCTTGAAGACTTTTCAGAAAATTTCGTTTCTGTGTATGCGCTCACGCTAAGCAGCTG] [-] EMBL CB649413 [TCCTTGGAACAGTTTAACTGAAAGAGTTTGTGCGTCTGACTGTATTCTCAACAATTGAATAGGTCCTAGTGGTGCAAGAAAAGTACTGTGGTTCATCTTTGGATGGTGCTGNGAAACTCCCCACAGGGTTCATTCTTGCGTCGGAGGAAATATTTACAGGAGCTACTAGAGAAGTCAAGGAAGAAACTGGGGTTGACACTGAATTTGTGGACGTTGTTGCTTTTAGGCATGCACACAACGTGGCATTTCAGAAGTCCGACCTGTTCTTCATCTGCATGCTAAGGCCTACATCAAACAATATCAAAATCGACGAAACAGAGATTCAGGCAGCGAAGTGGATGCCGCTGGAGGAGTTCGTCAAGCAGCCGTTCATCCAGGGGGACCACATGTTCCAGAAGATCATGGACATCTGCATCCAGAGGCTCAGGAAGTGCTACTGCGGCCTGACCGCGCACAACGTCATCTCCAGGTTCGACGGCAGGAGGTCGACGCTGTACTACAACGTTTCTGAACCTGAGGATGTGAACTGCAATGCTTCTTGACAACGGATCGCCCAACCTTCCGTCAGGTTCGCGTTGTGATCTAGCATTAGGCTCTGTGCAATGCAGTGCAGAGTCTCGAGTACAGCGACCTGGGTAACTGCTTGTGAAGCAGAAATCCTCTGTAAATATGAAAAGAAGATAGGATTTATGGCAGGTCGGGTAGCTCTGACCGGCTGTTGCAGTTTCACGTAGATTGCAGCTGAACTGAAGAAGATCTTGAAGACTTTTCAGAAAATTTCGTTTCTGTGTATGCGCTCACGCTAAGCAGCTG] [-] EMBL CB647099 [ AAACTGGGGTTGACACTGAATTTGTGGACGTTGTTGCTTTTAGGCATGCACACAACGTGGCATTTCAGAAGTCCGACCTGTTCTTCATCTGCATGCTAAGGCCTACATCAAACAATATCAAAATCGACGAAACAGAGATTCAGGCAGCGAAGTGGATGCCGCTGGAGGAGTTCGTCAAGCAGCCGTTCATCCAGGGGGACCACATGTTCCAGAAGATCATGGACATCTGCATCCAGAGGCTCAGGAAGTGTTACTGCGGCCTGACCGCGCACAACGTCATTTCCAGGTTTGACGGCAGGAGGTCGACGCTGTACTACAACGTTTTTGAACCTGAGGATGTGAACTGCAATGCTTTTTGACAACGGATCGCCCAACCTTCCGTCAGGTTCGCGTTGTGATCTAGCATTAGGCTCTGTGCAATGCAGTGCAGAGTCTCGAGTACAGCGACCTGGGTAACTGCTTGTGAAGCAGAAATCCTCTGTAAATATGAAAAGAAGATAGGATTTATGGCAGGTCGGGTAGCTTTGACCGGCTGTTGCAGTTTCACGTAGATTGCAGCTGAACTGAAGAAGATCTTGAAG ] consensusID : consensus_14067#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 755 fasta sequence [GGGGGTTTGTGATCAACGATCAAATGGAGGTCCTAGTGGTGCAAGAAAAGTACTGGGGTTCATCTTTGGATGGTGCTTGGAAACTCCCCACAGGGTTCATTTTTGGGTCGGAGGAAATATTTACAGGAGCTACTAGAGAAGTCAAGGAAGAAACTGGGGTTGACACTGAATTTGTGGACGTTGTTGCTTTTAGGCATGCACACAACGTGGCATTTCAGAAGTCCGACCTGTTTTTCATTTGCATGCTAAGGCCTACATCAAACAATATCAAAATCGACGAAACAGAGATTCAGGCAGCGAAGTGGATGCCGCTGGAGGAGTTTGTCAAGCAGCCGTTCATCCAGGGGGACCACATGTTCCAGAAGATCATGGACATTTGCATCCAGAGGCTCAGGAAGTGTTACTGCGGCCTGACCGCGCACAACGTCATTTCCAGGTTTGACGGCAGGAGGTCGACGCTGTACTACAACGTTTTTGAACCTGAGGATGTGAACTGCAATGCTTTTTGACAACGGATCGCCCAACCTTCCGTCAGGTTCGCGTTGTGATCTAGCATTAGGCTCTGTGCAATGCAGTGCAGAGTTTCGAGTACAGCGACCTGGGTAACTGCTTGTGAAGCAGAAATCCTCTGTAAATATGAAAAGAAGATAGGATTTATGGCAGGTCGGGTAGCTCTGACCGGCTGTTGCAGTTTCACGTAGATTGCAGCTGAACTGAAGAAGATCTTGAAGACTTTTCAGAAAAAAAAAAAAAAA] [-] EMBL CB655967 [GGGGGTTTGTGATCAACGATCAAATGGAGGTCCTAGTGGTGCAAGAAAAGTACTGGGGTTCATCTTTGGATGGTGCTTGGAAACTCCCCACAGGGTTCATTTTTGGGTCGGAGGAAATATTTACAGGAGCTACTAGAGAAGTCAAGGAAGAAACTGGGGTTGACACTGAATTTGTGGACGTTGTTGCTTTTAGGCATGCACACAACGTGGCATTTCAGAAGTCCGACCTGTTTTTCATTTGCATGCTAAGGCCTACATCAAACAATATCAAAATCGACGAAACAGAGATTCAGGCAGCGAAGTGGATGCCGCTGGAGGAGTTTGTCAAGCAGCCGTTCATCCAGGGGGACCACATGTTCCAGAAGATCATGGACATTTGCATCCAGAGGCTCAGGAAGTGTTACTGCGGCCTGACCGCGCACAACGTCATTTCCAGGTTTGACGGCAGGAGGTCGACGCTGTACTACAACGTTTTTGAACCTGAGGATGTGAACTGCAATGCTTTTTGACAACGGATCGCCCAACCTTCCGTCAGGTTCGCGTTGTGATCTAGCATTAGGCTCTGTGCAATGCAGTGCAGAGTTTCGAGTACAGCGACCTGGGTAACTGCTTGTGAAGCAGAAATCCTCTGTAAATATGAAAAGAAGATAGGATTTATGGCAGGTCGGGTAGCTCTGACCGGCTGTTGCAGTTTCACGTAGATTGCAGCTGAACTGAAGAAGATCTTGAAGACTTTTCAGAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14067#0 ATCGCAAGCTGGAGCAGCGAGCACCGTAGCAGCAGCAGCAGCAGCCTCCTGGTACACACT 60 consensus_14067#2 ------------------------------------------------------------ consensus_14067#1 ------------------------------------------------------------ consensus_14067#0 GCACTACACAGCGCAGCAGCTAGCGATAGTGTATCGCACTTACTGGATACGCAGTCGAGC 120 consensus_14067#2 ------------------------------------------------------------ consensus_14067#1 ------------------------------------------------------------ consensus_14067#0 ATCTCCAGCAGCAGCAGCAGCGGAGTGATCAGCGATGGAGAGCAGCTTGGTCGACACAGC 180 consensus_14067#2 ------------------------------------------------------------ consensus_14067#1 ------------------------------------------------------------ consensus_14067#0 CGCCGCCACTCTCTGCCTGGCGGCGGCCGTCGGCGGGCGGCGCCGCGCCGGCAGCTTCTT 240 consensus_14067#2 ------------------------------------------------------------ consensus_14067#1 ------------------------------------------------------------ consensus_14067#0 GAACTGCTCGTGCTCCTCCAAAGAGTACAGGGTGAGCGCATCCTACTCCATTGGGCGGAT 300 consensus_14067#2 ------------------------------------------------------------ consensus_14067#1 ------------------------------------------------------------ consensus_14067#0 GCTGAGCGGGGTGAGGTCGGCGGCGCGCAAGAAGCTGTTCAGGAGCGAGCCGGCCGACCT 360 consensus_14067#2 ------------------------------------------------------------ consensus_14067#1 ------------------------------------------------------------ consensus_14067#0 GCTGGGGATCAGCTGGTCGCCGGACTCGCCGCCGTCGAACGGCACCGACGGCGGCCACCA 420 consensus_14067#2 ------------------------------------------------------------ consensus_14067#1 ------------------------------------------------------------ consensus_14067#0 CCACCATTGGTGGACGGCTCTCGAGAACAACTTCGTCCTCGAGTCCTCCGAGGACGAGTA 480 consensus_14067#2 ------------------------------------------------------------ consensus_14067#1 ------------------------------------------------------------ consensus_14067#0 CGGCGGGGTCGTCGTGGACGCCGACAGGCTGCCGTCCGACAAGGCCGCCTTCGCGCGCTC 540 consensus_14067#2 ------------------------------------------------------------ consensus_14067#1 ------------------------------------------------------------ consensus_14067#0 GCTCGCGGCGTCACTCTCCTACTGGAAGTCCGTGGGAAAGAAAGGGGTTTGGCTAAAGTT 600 consensus_14067#2 ------------------------------------------------------------ consensus_14067#1 ------------------------------------------------------------ consensus_14067#0 ACCAGTGGATCGCTCAGAGTTTGTTCCTATAGCAGTGAAGGAAGGTTTCAAGTACCACCA 660 consensus_14067#2 ------------------------------------------------------------ consensus_14067#1 ------------------------------------------------------------ consensus_14067#0 TGCCGAGGAAGCATATGTGATGCTGACATACTGGATTCCTCATGAAGAGCCATGTATGCT 720 consensus_14067#2 ------------------------------------------------------------ consensus_14067#1 -----------------------------------------------------------T 1 consensus_14067#0 CCCTGCAA--ATGCATCTCACCAGGTTGGAGTTGGGGGGTTTGTGATCAACGATCAAATG 778 consensus_14067#2 ----------------------------------GGGGGTTTGTGATCAACGATCAAATG 26 consensus_14067#1 CCTTGGAACAGTTTAACTGAAAGAGTTTGTGCGTCTGACTGTATTCTCAACAATTGAAT- 60 * * * * ***** ** *** consensus_14067#0 GAGGTCCTAGTGGTGCAAGAAAAGTACTGTGGTTCATCTTTGGATGGTGCTTGGAAACTC 838 consensus_14067#2 GAGGTCCTAGTGGTGCAAGAAAAGTACTGGGGTTCATCTTTGGATGGTGCTTGGAAACTC 86 consensus_14067#1 -AGGTCCTAGTGGTGCAAGAAAAGTACTGTGGTTCATCTTTGGATGGTGCTGNGAAACTC 119 **************************** ********************* ******* consensus_14067#0 CCCACAGGGTTCATTCTTGCGTCGGAGGAAATATTTACAGGAGCTACTAGAGAAGTCAAG 898 consensus_14067#2 CCCACAGGGTTCATTTTTGGGTCGGAGGAAATATTTACAGGAGCTACTAGAGAAGTCAAG 146 consensus_14067#1 CCCACAGGGTTCATTCTTGCGTCGGAGGAAATATTTACAGGAGCTACTAGAGAAGTCAAG 179 *************** *** **************************************** consensus_14067#0 GAAGAAACTGGGGTTGACACTGAATTTGTGGACGTTGTTGCTTTTAGGCATGCACACAAC 958 consensus_14067#2 GAAGAAACTGGGGTTGACACTGAATTTGTGGACGTTGTTGCTTTTAGGCATGCACACAAC 206 consensus_14067#1 GAAGAAACTGGGGTTGACACTGAATTTGTGGACGTTGTTGCTTTTAGGCATGCACACAAC 239 ************************************************************ consensus_14067#0 GTGGCATTTCAGAAGTCCGACCTGTTCTTCATCTGCATGCTAAGGCCTACATCAAACAAT 1018 consensus_14067#2 GTGGCATTTCAGAAGTCCGACCTGTTTTTCATTTGCATGCTAAGGCCTACATCAAACAAT 266 consensus_14067#1 GTGGCATTTCAGAAGTCCGACCTGTTCTTCATCTGCATGCTAAGGCCTACATCAAACAAT 299 ************************** ***** *************************** consensus_14067#0 ATCAAAATCGACGAAACAGAGATTCAGGCAGCGAAGTGGATGCCGCTGGAGGAGTTCGTC 1078 consensus_14067#2 ATCAAAATCGACGAAACAGAGATTCAGGCAGCGAAGTGGATGCCGCTGGAGGAGTTTGTC 326 consensus_14067#1 ATCAAAATCGACGAAACAGAGATTCAGGCAGCGAAGTGGATGCCGCTGGAGGAGTTCGTC 359 ******************************************************** *** consensus_14067#0 AAGCAGCCGTTCATCCAGGGGGACCACATGTTCCAGAAGATCATGGACATCTGCATCCAG 1138 consensus_14067#2 AAGCAGCCGTTCATCCAGGGGGACCACATGTTCCAGAAGATCATGGACATTTGCATCCAG 386 consensus_14067#1 AAGCAGCCGTTCATCCAGGGGGACCACATGTTCCAGAAGATCATGGACATCTGCATCCAG 419 ************************************************** ********* consensus_14067#0 AGGCTCAGGAAGTGCTACTGCGGCCTGACCGCGCACAACGTCATCTCCAGGTTCGACGGC 1198 consensus_14067#2 AGGCTCAGGAAGTGTTACTGCGGCCTGACCGCGCACAACGTCATTTCCAGGTTTGACGGC 446 consensus_14067#1 AGGCTCAGGAAGTGCTACTGCGGCCTGACCGCGCACAACGTCATCTCCAGGTTCGACGGC 479 ************** ***************************** ******** ****** consensus_14067#0 AGGAGGTCGACGCTGTACTACAACGTTTCTGAACCTGAGGATGTGAACTGCAATGCTTCT 1258 consensus_14067#2 AGGAGGTCGACGCTGTACTACAACGTTTTTGAACCTGAGGATGTGAACTGCAATGCTTTT 506 consensus_14067#1 AGGAGGTCGACGCTGTACTACAACGTTTCTGAACCTGAGGATGTGAACTGCAATGCTTCT 539 **************************** ***************************** * consensus_14067#0 TGACAACGGATCGCCCAACCTTCCGTCAGGTTCGCGTTGTGATCTAGCATTAGGCTCTGT 1318 consensus_14067#2 TGACAACGGATCGCCCAACCTTCCGTCAGGTTCGCGTTGTGATCTAGCATTAGGCTCTGT 566 consensus_14067#1 TGACAACGGATCGCCCAACCTTCCGTCAGGTTCGCGTTGTGATCTAGCATTAGGCTCTGT 599 ************************************************************ consensus_14067#0 GCAATGCAGTGCAGAGTCTCGAGTACAGCGACCTGGGTAACTGCTTGTGAAGCAGAAATC 1378 consensus_14067#2 GCAATGCAGTGCAGAGTTTCGAGTACAGCGACCTGGGTAACTGCTTGTGAAGCAGAAATC 626 consensus_14067#1 GCAATGCAGTGCAGAGTCTCGAGTACAGCGACCTGGGTAACTGCTTGTGAAGCAGAAATC 659 ***************** ****************************************** consensus_14067#0 CTCTGTAAATATGAAAAGAAGATAGGATTTATGGCAGGTCGGGTAGCTCTGACCGGCTGT 1438 consensus_14067#2 CTCTGTAAATATGAAAAGAAGATAGGATTTATGGCAGGTCGGGTAGCTCTGACCGGCTGT 686 consensus_14067#1 CTCTGTAAATATGAAAAGAAGATAGGATTTATGGCAGGTCGGGTAGCTCTGACCGGCTGT 719 ************************************************************ consensus_14067#0 TGCAGTTTCACGTAGATTGCAGCTGAACTGAAGAAGATCTTGAAGACTTTTCAGAAAATT 1498 consensus_14067#2 TGCAGTTTCACGTAGATTGCAGCTGAACTGAAGAAGATCTTGAAGACTTTTCAGAAAAAA 746 consensus_14067#1 TGCAGTTTCACGTAGATTGCAGCTGAACTGAAGAAGATCTTGAAGACTTTTCAGAAAATT 779 ********************************************************** consensus_14067#0 TCGTTTCTGTGTATGCGCTCACGCTAAGCAGCTGCTTAATGTGTATCTAGTGTTGCTATG 1558 consensus_14067#2 AAAAAAAAA--------------------------------------------------- 755 consensus_14067#1 TCGTTTCTGTGTATGCGCTCACGCTAAGCAGCTG-------------------------- 813 consensus_14067#0 GCGAAAGCAAAGGACACGTACACACCAAGAACCAGGACACTAGTAGGATGTGATTGCGCT 1618 consensus_14067#2 ------------------------------------------------------------ consensus_14067#1 ------------------------------------------------------------ consensus_14067#0 CCGAGTTCTGCACTTACGCGAACAGTGTGCCAAAATTTAGGTACTTGCAACATTGCAAGT 1678 consensus_14067#2 ------------------------------------------------------------ consensus_14067#1 ------------------------------------------------------------ consensus_14067#0 ATCAAATGTGTATGCAACCCCTTCTTTGCGCGTGCAAAGTATAATTGAAGAACCTCCTGA 1738 consensus_14067#2 ------------------------------------------------------------ consensus_14067#1 ------------------------------------------------------------ consensus_14067#0 ATGTCTCATCACTAAAA 1755 consensus_14067#2 ----------------- consensus_14067#1 ----------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||