These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14071#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 2106 fasta sequence [TTCTCTCTTGGTCTTATCCTCCTCCTTGTTGTTGCGGGAAGAGGCAGGAAGGAGGAGGTTTTGTGGTGCGATCTTGTTGGGGTTTCAGGTCAGAAGGGAGAAGGGGAGAGGTCAGCCATGGCATTGCCTGTTTCCCTCCTCCGCATCGCGGCGGTTCTGCTCGCCATCTTGCCATTCTGCGCCACGCATCCAAGCCCCGGGTTCCATGCTCCTCGCGAGTTTCACAAGGCACTCGTCCCAGATAGATATGGATTTGTGGCAAGAAGATCAATTGCTGAAGCTCCTGTTGACGTAAATGTCACTACAAACAGTTCCTTTGTCTT-GGCGCAAGAGCGAACATATAGAAAAGACCCCTTGAATGGATTCAGGAAATA-TACTGGCGGTTGGAATATTAGCGAAGTGCACTATATGGCTTCAGTTGGATACACAGCTTTTCCACTGTTCATCATTGCCTTGGT-GT-GGTTTGTGCTGTTTTT-TCTGG-TTATGCTTGGAATTTGCTGCAAGCATTGCTGTTGTCCACA-TCGCAG-TTACACATACTCTCGGGTAGCATATGCCCTATCTCTGATACTTCTAATATTGTTCACTTGTGCTGCAATTGTTGGATGTGTCATGCTGTATGATGGT-CAAGG-AAAGTTCCATAAAAGCACAACGACTACCTTGAATTTTGTCGTTAGCCAGGCCAA-TTTTACTGTCGAAAACCTTAATAACTTATCC-GATAGTTTATC-TGCTGCAAAAAAGGTTGACATAGGGCGATCCTTTTTGCCTAACGAT-GTGCAAAATCAGATCAATGAAATTCAAGGAAAGTTGAACTCATCAGCTACTGAGCTTGCTACTAGAACTACTGACAATTCCGAGAAGATACAAAAATTGCTAAATCAAGTGCGGATTGCTTTGATTATCATTGCGGCAGTAATGCTTCTTCTGGCATTTATTGGCTTCTTACTATCTATCTTTGGCCTGGAATTCATTGTCTCTATTTTGGTGATTATCGGGTGGATACTAGTCACCGGGACGTTTATCCTGTGTGGTGTCTTCCTTCTTCTGCATAATGTCGTCGCAGATACTTGTGTCTCGATGGAGGAGTGGGTTGCTCATCCAACAGAGCACACAGCTCTGGATGACATTATTCCCTGTGTTGAACCTGCCACCGCGAATGAATCCCTGTATAGAAGTAGGCAAGTCACTTACCAACTGGTGAATCTGGTAAACCAAGTAATCACCAACGTGTCCAATGGAAACTTCCCTCCGCAAACTCCTTTCTTCTACTTCAATCAGTCGGGGCCACTGATGCCTACACTCTGCAACCCGTTCACAGCCGATCTGAATAACCGTACTTGCACCAGAGGAGAGGTTACCTTGGACAATGCAACCCGGGTTTGGAAGAATTTTGAGTGCCAGACTACCACTGTCTCAGGAACTGAGATATGCACTACCGTGGGCCGTGTTACCCCAAC-GA-TTCTCGG-TCAGATGGCAGCGGGCGTGAATGTGAGCCAGGGGCTGT-ATCAGTATGGGCCCTTCCTGAT-CCA-GCTGGAGGAC-TGCAC-TTTCGTCCGCGACACCTTCACCAACATCAACCAGAACCA-CTGCCCTGGCCTGGAGAGGTACAGCAAATGGG-TTTACGTC-GGCCTGGTGATGGTTTCGTCGGCC-GTTATGCTCTCC-CTCGTCTTCTGGGTGATCTAC-GCCA-GGGAG-CGGCGC-CA-CCGTGCGTACAGC-A--A-ACAGCACAACTAC-GCTGACAAGCCGCATCCGACTGGC-CCGGACGCTTGATGCATAT-GGCCGAT-GC-TGTGCTGCAGAAGAATCTCCATGTCCATAC-TCTTCGTGCCTGTCATCATCATGTAGATCA-CCGTGCC-TTCTGATTGTTCGTTGGTTACACC-GATCCTGTCCTCTTCTTT-TTTTTTCTTTTTTTTTTGTTGTAGCATTGATGTGAATTATTATTGTAGCTTGATCTTTTTCATCTTGTTTGCTCTTCTTGGTGAACTGAAACTTTGTTAAGAGGTGCTGTTTGTGAACTTGAGATAGATTTCTGACTTTGTGCCATTAGAGTTTCAGTTTGTGTACCTGCTGCTGTTGATGTACAGTCATCATGGTCCAGAAGAATTGTTGCATTGTCAAAAA] [+] EMBL CF277021 [TTCTCTCTTGGTCTTATCCTCCTCCTTGTTGTTGCGGGAAGAGGCAGGAAGGAGGAGGTTTTGTGGTGCGATCTTGTTGGGGTTTCAGGTCAGAAGGGAGAAGGGGAGAGGTCAGCCATGGCATTGCCTGTTTCCCTCCTCCGCATCGCGGCGGTTCTGCTCGCCATCTTGCCATTCTGCGCCACGCATCCAAGCCCCGGGTTCCATGCTCCTCGCGAGTTTCACAAGGCACTCGTCCCAGATAGATATGGATTTGTGGCAAGAAGATCAATTGCTGAAGCTCCTGTTGACGTAAATGTCACTACAAACAGTTCCTTTGTCTT GGCGCAAGAGCGAACATATAGAAAAGACCCCTTGAATGGATTCAGGAAATATTACTGGCGGTTGGAATATTAGCGAAGTGCACTATATGGCTTCAGTTGGATACACAGCTTTTCCACTGTTCATCATTGCCTTGGTGGTGGGTTGGTGCTGTTTTT TCTGG TTATGCTTGGAATTTGCTGC AGCATTGCTGTTGTCCACATTCGCAG TTACACATACTCTCGGGTAGCATATGCCCTATCTCTGATAC ] [+] EMBL AK064917 [ CCTCCTCCTTGTTGTTGCGGGAAGAGGCAGGAAGGAGGAGGTTTTGTGGTGCGATCTTGTTGGGGTTTCAGGTCAGAAGGGAGAAGGGGAGAGGTCAGCCATGGCATTGCCTGTTTCCCTCCTCCGCATCGCGGCGGTTCTGCTCGCCATCTTGCCATTCTGCGCCACGCATCCAAGCCCCGGGTTCCATGCTCCTCGCGAGTTTCACAAGGCACTCGTCCCAGATAGATATGGATTTGTGGCAAGAAGATCAATTGCTGAAGCTCCTGTTGACGTAAATGTCACTACAAACAGTTCCTTTGTCTT GGCGCAAGAGCGAACATATAGAAAAGACCCCTTGAATGGATTCAGGAAATA TACTGGCGGTTGGAATATTAGCGAAGTGCACTATATGGCTTCAGTTGGATACACAGCTTTTCCACTGTTCATCATTGCCTTGGT GT GGTTTGTGCTGTTTTT TCTGG TTATGCTTGGAATTTGCTGCAAGCATTGCTGTTGTCCACA TCGCAG TTACACATACTCTCGGGTAGCATATGCCCTATCTCTGATACTTCTAATATTGTTCACTTGTGCTGCAATTGTTGGATGTGTCATGCTGTATGATGGT CAAGG AAAGTTCCATAAAAGCACAACGACTACCTTGAATTTTGTCGTTAGCCAGGCCAA TTTTACTGTCGAAAACCTTAATAACTTATCC GATAGTTTATC TGCTGCAAAAAAGGTTGACATAGGGCGATCCTTTTTGCCTAACGAT GTGCAAAATCAGATCAATGAAATTCAAGGAAAGTTGAACTCATCAGCTACTGAGCTTGCTACTAGAACTACTGACAATTCCGAGAAGATACAAAAATTGCTAAATCAAGTGCGGATTGCTTTGATTATCATTGCGGCAGTAATGCTTCTTCTGGCATTTATTGGCTTCTTACTATCTATCTTTGGCCTGGAATTCATTGTCTCTATTTTGGTGATTATCGGGTGGATACTAGTCACCGGGACGTTTATCCTGTGTGGTGTCTTCCTTCTTCTGCATAATGTCGTCGCAGATACTTGTGTCTCGATGGAGGAGTGGGTTGCTCATCCAACAGAGCACACAGCTCTGGATGACATTATTCCCTGTGTTGAACCTGCCACCGCGAATGAATCCCTGTATAGAAGTAGGCAAGTCACTTACCAACTGGTGAATCTGGTAAACCAAGTAATCACCAACGTGTCCAATGGAAACTTCCCTCCGCAAACTCCTTTCTTCTACTTCAATCAGTCGGGGCCACTGATGCCTACACTCTGCAACCCGTTCACAGCCGATCTGAATAACCGTACTTGCACCAGAGGAGAGGTTACCTTGGACAATGCAACCCGGGTTTGGAAGAATTTTGAGTGCCAGACTACCACTGTCTCAGGAACTGAGATATGCACTACCGTGGGCCGTGTTACCCCAAC GA TTCTCGG TCAGATGGCAGCGGGCGTGAATGTGAGCCAGGGGCTGT ATCAGTATGGGCCCTTCCTGAT CCA GCTGGAGGAC TGCAC TTTCGTCCGCGATACCTTCACCAACATCAACCAGAACCA CTGCCCTGGCCTGGAGAGGTACAGCAAATGGG TTTACGTC GGCCTGGTGATGGTTTCGTCGGCC GTTATGCTCTCC CTCGTCTTCTGGGTGATCTAC GCCA GGGAG CGGCGC CA CCGTGCGTACAGC A A ACAGCACAACTAC GCTGACAAGCCGCATCCGACTGGC CCGGACGCTTGATGCATAT GGCCGAT GC TGTGCTGCAGAAGAATCTCCATGTCCATAC TCTTCGTGCCTGTCATCATCATGTAGATCA CCGTGCC TTCTGATTGTTCGTTGGTTACACC GATCCTGTCCTCTTCTTT TTTTTTCTTTTTTTTTTGTTGTAGCATTGTTGTGAATTATTATTGTAGCTTGATCTTTTTCATCTTGTTTGCTCTTCTTGGTGAACTGAAACTTTGTTAAGAGGTGCTGTTTGTGAACTTGAGATAGATTTCTGACTTTGTGCCATTAGAGTTTCAGTTTGTGTACCTGCTGCTGTTGATGTACAGTCATCATGGTCCAGAAGAATTGTTG ] [+] EMBL OSS11372A [ TCAGGTCAGAAGNGAGAAGGGGAGAGGTCAGCCATGGCATTGCCTGNTTCCCTCCTCCGCATCG GCCGGTTCTGCTCGCCATCTTGNCATTCTGCGCCACGCATCCAAGGCCCGGGTTCCATGNTCCTCGCGAGTTTCACAAGGCACTCGTCCCAGATAGATATGGATTTGTGGCAAGNAGATCAATTGCTGAAGCTCCTGTTGACGTAAATGTCACTACANACAGTTCCTTTGTCTTCGGC ] [+] EMBL OSR27341A [ GCATCGC GCGGTTCTGCTCGCCATCTTGCCATTCTGCGCCACGCATCCAAGCCCCGGGTTCCATGCTCCTCGCGAGTTTCACAAGGCACTCGTCCCAGATAGATATGGATTTGTGGCAAGAAGATCAATTGCTGAAGCTCCTGTTGACGTAAATGTCACTACAAACAGTTCCTTTGTCTT GGCGCAAGAGCGAACATATAGAAAAGACCCCTTGAATGGATTCAGGAAATA TACTGGCGGTTGGAATATTAGCGAAGTGCACTATATGGCTTCAGTTGGATACACAGCTTTTCCACTGTTCATCATTGCCTTGGT GT GGTTTGTGCTGTTTTTNTCTGGTTTATGCTTGGAATTTGCTGCAAGCATTGCTGTTGTCCACA TCGCAGTTTACACATACTCTCGGGTAGCATATGCCCTATCTCTGATACTTCTAATATTGTTCACTTGTGCTGCAATTGTTGGATGTGTCATGCTGTATGATGGTCCAAGGAAAAGTTCCATAAAAGCACAACGACTACCTTGAATTTTGTCGTTAGCCAGGCCAATTTTTACTGTCGAAAANCTTAATAACTTATCCGGATAGTTTATCTTGCTGCNAAAAAGGGTNACATAGGGCGATCCTTTTTGCCTAACGATNGTGCAAAATCAGATCAATGAAATTCAAGG AAGTTGAACTCATCAGCTACTGAGCTTGC ] [+] EMBL AK061912 [ TTGTCCACA TCGCAG TTACACATACTCTCGGGTAGCATATGCCCTATCTCTGATACTTCTAATATTGTTCACTCGTGCTGCAATTGTTGGATGTGTCATGCTGTATGATGGT CAAGG AAAGTTCCATAAAAGCACAACGACTACCTCGAATTTTGTCGTTAGCCAGGCCAA TTTTACTGTCGAAAACCTTAATAACTTATCC GATAGTTTATC TGCTGCAAAAAAGGTTGACATAGGGCGATCCTTTTTGCCTAACGAT GTGCAAAATCAGATCAATGAAATTCAAGGAAAGTTGAACTCATCAGCTACTGAGCTTGCTACTAGAACTACTGACAATTCCGAGAAGATACAAAAATTGCTAAATCAAGTGCGGATTGCTTTGATTATCATTGCGGCAGTAGTGCTTCTTCTGGCATTTATTGGCTTCTTACTATCTATCTTTGGCCTGGAATTCATTGTCTCTATTTTGGTGATTATCGGGTGGATACTAGTCACCGGGACGTTTATCCTGTGTGGTGTCTTCCTTCTTCTGCATAATGTCGTCGCAGATACTTGTGTCTCGATGGAGGAGTGGGTTGCTCATCCAACAGAGCACACAGCTCTGGATGACATTATTCCCTGTGTTGAACCTGCCACCGCGAATGAATCCCTGTATAGAAGTAGGCAAGTCACTTACCAACTGGTGAATCTGGTAAACCAAGTAATCACCAACGTGTCCAATGGAAACTTCCCTCCGCAAACTCCTTTCTTCTACTTCAATCAGTCGGGGCCACTGATGCCTACACTCTGCAACCCGTTCACAGCCGATCTGAATAACCGTACTTGCACCAGAGGAGAGGTTACCTTGGACAATGCAACCCGGGTTTGGAAGAATTTTGAGTGCCAGACTACCACTGTCTCAGGAACTGAGATATGCACTACCGTGGGCCGTGTTACCCCAAC GA TTCTCGG TCAGATGGCAGCGGGCGTGAATGTGAGCCAGGGGCTGT ATCAGTATGGGCCCTTCCTGAT CCA GCTGGAGGAC TGCAC TTTCGTCCGCGACACCTTCACCAACATCAACCAGAACCA CTGCCCTGGCCTGGAGAGGTACAGCAAATGGG TTTACGTC GGCCTGGTGATGGTTTCGTCGGCC GTTATGCTCTCC CTCGTCTTCTGGGTGATCTAC GCCA GGGAG CGGCGC CA CCGTGCGTACAGC A A ACAGCACAACTAC GCTGACAAGCCGCATCCGACTGGC CCGGACGCTTGATGCATAT GGCCGAT GC TGTGCTGCAGAAGAATCTCCATGTCCATAC TCTTCGTGCCTGTCATCATCATGTAGATCA CCGTGCC TTCTGATTGTTCGTTGGTTACACC GATCCTGTCCTCTTCTTT TTTTTTCTTTTTTTTTTGTTGTAGCATTGATGTGAATTATTATTGTAGCTTGATCTTTTTCATCTTGTTTGCTCTTCTTGGTGAACTGAAACTTTGTTAAGAGGTGCTGTTTGTGAACTTGAGACAGATTTCTGACTTTGTGCCATTAGAGTTT ] [+] EMBL CA767440 [ TTTGGTGATTATCGGGTGGATACTAGTCACCGGGACGTTTATCCTGTGTGGTGTCTTCCTTCTTCTGCATAATGTCGTCGCAGATACTTGTGTCTCGATGGAGGAGTGGGTTGCTCATCCAACAGAGCACACAGCCCTGGATGACATTATTCCCTGTGTTGAACCTGCCACCGCGAATGAATCCCTGTATAGAAGTAGGCAAGTCACTTACCAACTGGTGAATCTGGTGAACCAAGTAATCACCAACGTGTCCAATGGAAACTTCCCTCCGCAAACTCCTTTCTTCTACTTCAATCAGTCGGGGCCACTGATGCCTACACTCTGCAACCCGTTCACAGCCGATCTGAATAACCGTACTTGCACCAGAGGAGAGGTTACCTTGGACAATGCAACCCGGGTTTGGAAGAATTTTGAGTGCGAGACTACCACTGTCTCAGGAACCGAGATATGCACTACCGTGGGCCGTGTTACCCCAAC GA TTCTCGG TCAGATGGCAGCGGGCGTGAATGTGAGCCAGGGGCTGT ATCAGTATGGGCCCTTCCTGAT CCA GCTGGAGGAC TGCAC TTTCGTCCGCGACACCTTCACCAACATCAACCAGAACCA CTGCCCTGGCCTGGAGAGGTACAGCAAATGGG TTTACGTC GGCCTGGTGATGGNTTCGTCGGCC GNTATGCTCTNC CTCGTCTTCTGGGTGATCTAC GCCAGGGGAG CGGCGC CA CCGTGCGTACAGC A A ACAGCACAACTAC GCTGACAAGCCGCATTCGACTGGC CCGGACGCTTGATGCATATGGGCCGAT GC TGGGCTGCAAAANAATCTCCATGTCCATACTTNTTCGGGNCTGGCATNATNATGTANATNA CCGn ] [+] EMBL CB683468 [ TCCCTCCGCAAACTCCTTTCTTCTACTTCAATCAGTCGGGGCCACTGATGCCTACACTCTGCAACCCGTTCACAGCCGATCTGAATAACCGTACTTGCACCAGAGGAGAGGTTACCTTGGACAATGCAACCCGGGTTTGGAAGAATTTTGAGTGCCAGACTACCACTGTCTCAGGAACTGAGATATGCACTACCGTGGGCCGTGTTACCCCAAC GA TTCTCGG TCAGATGGCAGCGGGCGTGAATGTGAGCCAGGGGCTGT ATCAGTATGGGCCCTTCCTGAT CCA GCTGGAGGAC TGCAC TTTCGTCCGCGACACCTTCACCAACATCAACCAGAACCA CTGCCCTGGCCTGGAGAGGTACAGCAAATGGG TTTACGTC GGCCTGGTGATGGTTTCGTCGGCC GTTATGCTCTCC CTCGTCTTCTGGGTGATCTAC GCCA GGGAG CGGCGC CA CCGTGCGTACAGC A A ACAGCACAACTAC GCTGACAAGCCGCATCCGACTGGC CCGGACGCTTGATGCATAT GGCCGAT GC TGTGCTGCAGAAGAATCTCCATGTCCATAC TCTTCGTGCCTGTCATCATCATGTAGATCA CCGTGCC TTCTGATTGTTCGTTGGTTACACC GATCCTGTCCTCTTCTTT TTTTTTCTTTTTTTTTTGTTGTAGCATTGATGTGAATTATTATTGTAGCTTGATCTTTTTCATCTTGTTTGCTCTTCTTGGTGAACTGAAACTTTGTTAAGAGGTGCTGTTTGTGAACTTGAGATAGATTTCTGA ] [+] EMBL BF475203 [ AGAGGAGAGGTTACCTTGGACAATGCAACCCGGGTTTGGAAGAATTTTGAGTGCGAGACTACCACTGTCTCAGGAACCGAGATATGCACTACCGTGGGCCGTGTTACCCCAAC GA TTCTCGG TCAGATGGCAGCGGGCGTGAATGTGAGCCAGGGGCTGT ATCAGTATGGGCCCTTCCTGAT CCA GCTGGAGGAC TGCAC TTTCGTCCGCGACACCTTCACCAACATCAACCAGAACCA CTGCCCTGGC ] [-] EMBL CB683853 [ TTACCTTGGACAATGCAACCCGGGTTTGGAAGAATTTTGAGTGCCAGACTACCACTGTCTCAGGAACTGAGATATGCACTACCGTGGGCCGTGTTACCCCAAC GA TTCTCGG TCAGATGGCAGCGGGCGTGAATGTGAGCCAGGGGCTGT ATCAGTATGGGCCCTTCCTGAT CCA GCTGGAGGAC TGCAC TTTCGTCCGCGACACCTTCACCAACATCAACCAGAACCA CTGCCCTGGCCTGGAGAGGTACAGCAAATGGG TTTACGTC GGCCTGGTGATGGTTTCGTCGGCC GTTATGCTCTCC CTCGTCTTCTGGGTGATCTAC GCCA GGGAG CGGCGC CA CCGTGCGTACAGC A A ACAGCACAACTAC GCTGACAAGCCGCATCCGACTGGC CCGGACGCTTGATGCATAT GGCCGAT GC TGTGCTGCAGAAGAATCTCCATGTCCATAC TCTTCGTGCCTGTCATCATCATGTAGATCA CCGTGCC TTCTGATTGTTCGTTGGTTACACC GATCCTGTCCTCTTCTTT TTTTTTCTTTTTTTTTTGTTGTAGCATTGATGTGAATTATTATTGTAGCTTGATCTTTTTCATCTTGTTTGCTCTTCTTGGTGAACTGAAACTTTGTTAAGAGGTGCTGTTTGTGAACTTGAGATAGATTTCTGACTTTGTGCCATTAGAGTTTCAGTTTGTGTACCTGCTGCAGGTGATGTACAGTCATCATGG ] [+] EMBL CB096472 [ TACCTTGGACAATGCAACCCGGGTTTGGAAGAATTTTGAGTGCGAGACTACCACTGTCTCAGGAACCGAGATATGCACTACCGTGGGCCGTGTTACCCCAAC GA TTCTCGG TCAGATGGCAGCGGGCGTGAATGTGAGCCAGGGGCTGT ATCAGTATGGGCCCTTCCTGAT CCA GCTGGAGGAC TGCAC TTTCGTCCGCGACACCTTCACCAACATCAACCAGAACCA CTGCCCTGGCCTGGAGAGGTACAGCAAATGGG TTTACGTC GGCCTGGTGATGGTTTCGTCGGCC GTTATGCTCTCC CTCGTCTTCTGGGTGATCTAC GCCA GGGAG CGGCGC CA CCGTGCGTACAGC A A ACAGCACAACTAC GCTGACAAGCCGCATCCGACTGGC CCGGACGCTTGATGTATAT GGCCGAT GC TGTGCTGCAGAAGAATCTCCATGTCCATAC TCTTCGTGCCTGTCATCATCATGTAGATCA CCGTGCC TTCTGATTGTTCGTTGGTTACACC GATCCTGTCCTCTTCTTT TTTTTCTTTTTTTTTTTGGTGNAGCATTGATGTGAATTATTATTGTAGCTTGATC ] [+] EMBL BI806334 [ ggTACCCCAACGGATTTCTCGGNTCAAATGCCACCGGNCGTGAATTTAACCCAGGGCCTNTAACCATTATGGCCCCTCCCTGATCCCA CCTGGAGGAC TGCAC TTTCGTCC CGACACCTTCACCAACATCAACCAGAACCACCTGCCCT GCCTGGAGAGGTACAGCAAATGGG TTTACATCAGGCCTGGTGATGGTTTCGTCAGCCAGTTATGCTCTCCACTCGTCTTCTGGGTGATCTACAGCCA GGGAG CGGCGC CACCCGTGCGTACAGCAA A ACAGCACAACTAC GCTGACAAGCCGCATCCGACTGGC CCGGACGCTTGATGCATAT GGCCGAT GC TGTGCTGCAGAAGAATCTCCATGTCCATAC TCTTCGTGCCTGTCATCATCATGTAGATCACCCGT CC TTCTGATTGTTC TTGGTTACCCCAGATCCTGTCCTCTTCTTTGTTTTTTCTTTTTTTTTTGTTGTA CATTGATGTGAATTATTATTGTAGCTTGATCTTTTTCATCTTGTTTGCTCTTCTTGGTGAACTGAAACTTTGTTAAGAGGTGCTGTTTGTGAACTTGAGATAGATTTCTGACTTTGNGCCATTAGAGTTa ] [+] EMBL BI807664 [ ccgTGAT CCACTCTGGAGGACATGCACATTTCGTCCGCGACACCTTCACCAACATC ACCAGAACCA CTGCCCTGGCCTGGAGAGGTACAGCAAATGGGCTTTAC TC GCCTGGTGATGGTTTCGTCAGCC GTTATGCTCTCC CTCGTCTTCTGGGTGATTTAC GCCA GGGAGACGGCGCACA ACGTGCGTACAGC ACTAGACAGCACAACTACAGCTGACAAGCCGCATCCGACTGGCACCGGACGCTTGATGCATAT GGCCGATAGCATGTGCTGCAGAAGAATCTCCATGTCCATAC TCTTCGTGCCTGTCATCATCATGTAGATCA CCGTGCCATTCTGATTGTTCGTTGGTTACACC GA ] [-] EMBL CF277022 [ AACCAGAACCA CTGCCCTGGCCTGGAGAGGTACAGCAAATGGG TTTACGTC GGCCTGGTGATGGTTTCGTCGGCC GTTATGCTCTCC CTCGTCTTCTGGGTGATCTAC GCCA GGGAG CGGCGC CA CCGTGCGTACAGC A A ACAGCACAACTAC GCTGACAAGCCGCATCCGACTGGC CCGGACGCTTGATGCATAT GGCCGAT GC TGTGCTGCAGAAGAATCTCCATGTCCATAC TCTTCGTGCCTGTCATCATCATGTAGATCA CCGTGCC TTCTGATTGTTCGTTGGTTACACC GATCCTGTCCTCTTCTTT TTTTTTCTTTTTTTTTTGTTGTAGCATTGATGTGAATTATTATTGTAGCTTGATCTTTTTCATCTTGTTTGCTCTTCTTGGTGAACTGAAACTTTGTTAAGAGGTGCTGTTTGTGAACTTGAGATAGATTTCTGACTTTGTGCCATTAGAGTTTCAGTTTGTGTACCTGCTGCTGTTGATGTACAGTCATCATGGTCCAGAAGAATTGTTGCATTGTCAAAAA] consensusID : consensus_14071#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 451 fasta sequence [CCTGGAGAGGTACAGCAAATGGGTTTACTCGGCCTGGTGATGGTTTCTCGCCGTTATGCTCGTCCCTCGTCTTCTGGGTGATCTACGCCAGGGAGCGGCGCCCCCGTGCGTACAGCCAACAGCACAACTACGCTGACAAGCCGCATCCGACTGGCCCGGACGCTTGATGCATATGGCCGATGCTGTGGCTGCAGAAGAATCTCCATGTCCATACTGCTTCGTGCCTGTCATCATCATGTAGATCACCGTGCCTTCTGATTGTTCGTTGGTTACACCGATCCTGTCCTCTTCTTTTTTTTTCTTGTTTTTTTGTGTTGTAGCCTTGATGTGAATTATTATTGTAGCTTGATCTTTTTCATCTTGTTTGCTCTTCTTGGTGAACTGAAACTTTGTTAAGAGGTGCTGTTTGTGAACTTGAGATAGATTTCTGACTTTGTGCCCAAAAAAAAAA] [+] EMBL BI811276 [CCTGGAGAGGTACAGCAAATGGGTTTACTCGGCCTGGTGATGGTTTCTCGCCGTTATGCTCGTCCCTCGTCTTCTGGGTGATCTACGCCAGGGAGCGGCGCCCCCGTGCGTACAGCCAACAGCACAACTACGCTGACAAGCCGCATCCGACTGGCCCGGACGCTTGATGCATATGGCCGATGCTGTGGCTGCAGAAGAATCTCCATGTCCATACTGCTTCGTGCCTGTCATCATCATGTAGATCACCGTGCCTTCTGATTGTTCGTTGGTTACACCGATCCTGTCCTCTTCTTTTTTTTTCTTGTTTTTTTGTGTTGTAGCCTTGATGTGAATTATTATTGTAGCTTGATCTTTTTCATCTTGTTTGCTCTTCTTGGTGAACTGAAACTTTGTTAAGAGGTGCTGTTTGTGAACTTGAGATAGATTTCTGACTTTGTGCCCAAAAAAAAAA] consensusID : consensus_14071#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 318 fasta sequence [CGCTTGATGCATATGGCCGATGCTGTGCTGCAGAAGAATCTCCATGTCCATACTCTTCGTGCCTGTCATCATCATGTAGATCACCGTGCCTTCTGATTGTTCGTTGGTTACACCGATCCTGTCCTCTTCTTTTTTTTTCTTTTTTTTTGTTGTAGCATTGATGTGAATTATTATTGTAGCTTGATCTTTTTCATCTTGTTTGCTCTTCTTGGTGAACTGAAACTTTGTTAAGAGGTGCTGTTTGTGAACTTGAGATAGATTTCTGACTTTGTGCCATTAGAGTTTCAGTTTGTGTAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU165959 [CGCTTGATGCATATGGCCGATGCTGTGCTGCAGAAGAATCTCCATGTCCATACTCTTCGTGCCTGTCATCATCATGTAGATCACCGTGCCTTCTGATTGTTCGTTGGTTACACCGATCCTGTCCTCTTCTTTTTTTTTCTTTTTTTTTGTTGTAGCATTGATGTGAATTATTATTGTAGCTTGATCTTTTTCATCTTGTTTGCTCTTCTTGGTGAACTGAAACTTTGTTAAGAGGTGCTGTTTGTGAACTTGAGATAGATTTCTGACTTTGTGCCATTAGAGTTTCAGTTTGTGTAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14071#0 TTCTCTCTTGGTCTTATCCTCCTCCTTGTTGTTGCGGGAAGAGGCAGGAAGGAGGAGGTT 60 consensus_14071#1 ------------------------------------------------------------ consensus_14071#2 ------------------------------------------------------------ consensus_14071#0 TTGTGGTGCGATCTTGTTGGGGTTTCAGGTCAGAAGGGAGAAGGGGAGAGGTCAGCCATG 120 consensus_14071#1 ------------------------------------------------------------ consensus_14071#2 ------------------------------------------------------------ consensus_14071#0 GCATTGCCTGTTTCCCTCCTCCGCATCGCGGCGGTTCTGCTCGCCATCTTGCCATTCTGC 180 consensus_14071#1 ------------------------------------------------------------ consensus_14071#2 ------------------------------------------------------------ consensus_14071#0 GCCACGCATCCAAGCCCCGGGTTCCATGCTCCTCGCGAGTTTCACAAGGCACTCGTCCCA 240 consensus_14071#1 ------------------------------------------------------------ consensus_14071#2 ------------------------------------------------------------ consensus_14071#0 GATAGATATGGATTTGTGGCAAGAAGATCAATTGCTGAAGCTCCTGTTGACGTAAATGTC 300 consensus_14071#1 ------------------------------------------------------------ consensus_14071#2 ------------------------------------------------------------ consensus_14071#0 ACTACAAACAGTTCCTTTGTCTTGGCGCAAGAGCGAACATATAGAAAAGACCCCTTGAAT 360 consensus_14071#1 ------------------------------------------------------------ consensus_14071#2 ------------------------------------------------------------ consensus_14071#0 GGATTCAGGAAATATACTGGCGGTTGGAATATTAGCGAAGTGCACTATATGGCTTCAGTT 420 consensus_14071#1 ------------------------------------------------------------ consensus_14071#2 ------------------------------------------------------------ consensus_14071#0 GGATACACAGCTTTTCCACTGTTCATCATTGCCTTGGTGTGGTTTGTGCTGTTTTTTCTG 480 consensus_14071#1 ------------------------------------------------------------ consensus_14071#2 ------------------------------------------------------------ consensus_14071#0 GTTATGCTTGGAATTTGCTGCAAGCATTGCTGTTGTCCACATCGCAGTTACACATACTCT 540 consensus_14071#1 ------------------------------------------------------------ consensus_14071#2 ------------------------------------------------------------ consensus_14071#0 CGGGTAGCATATGCCCTATCTCTGATACTTCTAATATTGTTCACTTGTGCTGCAATTGTT 600 consensus_14071#1 ------------------------------------------------------------ consensus_14071#2 ------------------------------------------------------------ consensus_14071#0 GGATGTGTCATGCTGTATGATGGTCAAGGAAAGTTCCATAAAAGCACAACGACTACCTTG 660 consensus_14071#1 ------------------------------------------------------------ consensus_14071#2 ------------------------------------------------------------ consensus_14071#0 AATTTTGTCGTTAGCCAGGCCAATTTTACTGTCGAAAACCTTAATAACTTATCCGATAGT 720 consensus_14071#1 ------------------------------------------------------------ consensus_14071#2 ------------------------------------------------------------ consensus_14071#0 TTATCTGCTGCAAAAAAGGTTGACATAGGGCGATCCTTTTTGCCTAACGATGTGCAAAAT 780 consensus_14071#1 ------------------------------------------------------------ consensus_14071#2 ------------------------------------------------------------ consensus_14071#0 CAGATCAATGAAATTCAAGGAAAGTTGAACTCATCAGCTACTGAGCTTGCTACTAGAACT 840 consensus_14071#1 ------------------------------------------------------------ consensus_14071#2 ------------------------------------------------------------ consensus_14071#0 ACTGACAATTCCGAGAAGATACAAAAATTGCTAAATCAAGTGCGGATTGCTTTGATTATC 900 consensus_14071#1 ------------------------------------------------------------ consensus_14071#2 ------------------------------------------------------------ consensus_14071#0 ATTGCGGCAGTAATGCTTCTTCTGGCATTTATTGGCTTCTTACTATCTATCTTTGGCCTG 960 consensus_14071#1 ------------------------------------------------------------ consensus_14071#2 ------------------------------------------------------------ consensus_14071#0 GAATTCATTGTCTCTATTTTGGTGATTATCGGGTGGATACTAGTCACCGGGACGTTTATC 1020 consensus_14071#1 ------------------------------------------------------------ consensus_14071#2 ------------------------------------------------------------ consensus_14071#0 CTGTGTGGTGTCTTCCTTCTTCTGCATAATGTCGTCGCAGATACTTGTGTCTCGATGGAG 1080 consensus_14071#1 ------------------------------------------------------------ consensus_14071#2 ------------------------------------------------------------ consensus_14071#0 GAGTGGGTTGCTCATCCAACAGAGCACACAGCTCTGGATGACATTATTCCCTGTGTTGAA 1140 consensus_14071#1 ------------------------------------------------------------ consensus_14071#2 ------------------------------------------------------------ consensus_14071#0 CCTGCCACCGCGAATGAATCCCTGTATAGAAGTAGGCAAGTCACTTACCAACTGGTGAAT 1200 consensus_14071#1 ------------------------------------------------------------ consensus_14071#2 ------------------------------------------------------------ consensus_14071#0 CTGGTAAACCAAGTAATCACCAACGTGTCCAATGGAAACTTCCCTCCGCAAACTCCTTTC 1260 consensus_14071#1 ------------------------------------------------------------ consensus_14071#2 ------------------------------------------------------------ consensus_14071#0 TTCTACTTCAATCAGTCGGGGCCACTGATGCCTACACTCTGCAACCCGTTCACAGCCGAT 1320 consensus_14071#1 ------------------------------------------------------------ consensus_14071#2 ------------------------------------------------------------ consensus_14071#0 CTGAATAACCGTACTTGCACCAGAGGAGAGGTTACCTTGGACAATGCAACCCGGGTTTGG 1380 consensus_14071#1 ------------------------------------------------------------ consensus_14071#2 ------------------------------------------------------------ consensus_14071#0 AAGAATTTTGAGTGCCAGACTACCACTGTCTCAGGAACTGAGATATGCACTACCGTGGGC 1440 consensus_14071#1 ------------------------------------------------------------ consensus_14071#2 ------------------------------------------------------------ consensus_14071#0 CGTGTTACCCCAACGATTCTCGGTCAGATGGCAGCGGGCGTGAATGTGAGCCAGGGGCTG 1500 consensus_14071#1 ------------------------------------------------------------ consensus_14071#2 ------------------------------------------------------------ consensus_14071#0 TATCAGTATGGGCCCTTCCTGATCCAGCTGGAGGACTGCACTTTCGTCCGCGACACCTTC 1560 consensus_14071#1 ------------------------------------------------------------ consensus_14071#2 ------------------------------------------------------------ consensus_14071#0 ACCAACATCAACCAGAACCACTGCCCTGGCCTGGAGAGGTACAGCAAATGGGTTTACGTC 1620 consensus_14071#1 -----------------------------CCTGGAGAGGTACAGCAAATGGGTTTAC-TC 30 consensus_14071#2 ------------------------------------------------------------ consensus_14071#0 GGCCTGGTGATGGTTTCGTCGGCCGTTATGCTC-TCCCTCGTCTTCTGGGTGATCTACGC 1679 consensus_14071#1 GGCCTGGTGATGGTTTCTC--GCCGTTATGCTCGTCCCTCGTCTTCTGGGTGATCTACGC 88 consensus_14071#2 ------------------------------------------------------------ consensus_14071#0 CAGGGAGCGGCGCCACCGTGCGTACAGCAAACAGCACAACTACGCTGACAAGCCGCATCC 1739 consensus_14071#1 CAGGGAGCGGCGCCCCCGTGCGTACAGCCAACAGCACAACTACGCTGACAAGCCGCATCC 148 consensus_14071#2 ------------------------------------------------------------ consensus_14071#0 GACTGGCCCGGACGCTTGATGCATATGGCCGATGCTGTG-CTGCAGAAGAATCTCCATGT 1798 consensus_14071#1 GACTGGCCCGGACGCTTGATGCATATGGCCGATGCTGTGGCTGCAGAAGAATCTCCATGT 208 consensus_14071#2 ------------CGCTTGATGCATATGGCCGATGCTGTG-CTGCAGAAGAATCTCCATGT 47 *************************** ******************** consensus_14071#0 CCATACT-CTTCGTGCCTGTCATCATCATGTAGATCACCGTGCCTTCTGATTGTTCGTTG 1857 consensus_14071#1 CCATACTGCTTCGTGCCTGTCATCATCATGTAGATCACCGTGCCTTCTGATTGTTCGTTG 268 consensus_14071#2 CCATACT-CTTCGTGCCTGTCATCATCATGTAGATCACCGTGCCTTCTGATTGTTCGTTG 106 ******* **************************************************** consensus_14071#0 GTTACACCGATCCTGTCCTCTTCTTTTTTTTTCTTTTTTTTTTGT--TGTAGCATTGATG 1915 consensus_14071#1 GTTACACCGATCCTGTCCTCTTCTTTTTTTTTCTTGTTTTTTTGTGTTGTAGCCTTGATG 328 consensus_14071#2 GTTACACCGATCCTGTCCTCTTCTTTTTTTTTCTT-TTTTTTTGT--TGTAGCATTGATG 163 *********************************** ********* ****** ****** consensus_14071#0 TGAATTATTATTGTAGCTTGATCTTTTTCATCTTGTTTGCTCTTCTTGGTGAACTGAAAC 1975 consensus_14071#1 TGAATTATTATTGTAGCTTGATCTTTTTCATCTTGTTTGCTCTTCTTGGTGAACTGAAAC 388 consensus_14071#2 TGAATTATTATTGTAGCTTGATCTTTTTCATCTTGTTTGCTCTTCTTGGTGAACTGAAAC 223 ************************************************************ consensus_14071#0 TTTGTTAAGAGGTGCTGTTTGTGAACTTGAGATAGATTTCTGACTTTGTGCCATTAGAGT 2035 consensus_14071#1 TTTGTTAAGAGGTGCTGTTTGTGAACTTGAGATAGATTTCTGACTTTGTGCCCAAAAAAA 448 consensus_14071#2 TTTGTTAAGAGGTGCTGTTTGTGAACTTGAGATAGATTTCTGACTTTGTGCCATTAGAGT 283 **************************************************** * * consensus_14071#0 TTCAGTTTGTGTACCTGCTGCTGTTGATGTACAGTCATCATGGTCCAGAAGAATTGTTGC 2095 consensus_14071#1 AAA--------------------------------------------------------- 451 consensus_14071#2 TTCAGTTTGTGTAAAAAAAAAAAAAAAAAAAAAAA------------------------- 318 consensus_14071#0 ATTGTCAAAAA 2106 consensus_14071#1 ----------- consensus_14071#2 ----------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||