cluster # 14072

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Oryza sativa
cluster # 14072 cluster # 14072 Sequences # 15 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_14072#0 length = 1525 sequences # 7

consensus_14072#1 length = 1341 sequences # 7
consensus_14072#2 length = 222 sequences # 1

consensusID : consensus_14072#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1525
fasta sequence

                              [CCAACCCCCCCCCCCCCAAAAAAAAAAAGAAAAAGAAAAAAAAACCAGCAAATTTCCCTTCCCATGCGACGCGACCTCCTCCTCGGCGACTAGCCGGCGAACTCGCGCACGCCACCTCGGCCCACCCAGGCCCAGGCCCACCTCGCCGTGGATCGCCGGAGTAGGGGGTTGCCGGCCGGAGCGGCGGCTACCACCAGATGGTCGGCGGCGGGGGCGAGTAGCGCGACGGCGGCGGCGAGGACGACGAGCGGCGGACGGATCTGCGGCGCGGCGGGGCGGCGGGGGCGGGGGCCACCATGTCTGCCGTAGTGTGTGGGAAGAGGTCCTCCTCCATCTTCGGCGACGAGCTCATCCCTTCCTCCCCT-CCCTCCCCATACCCTCCCCACCACCACCACCACCCCGCCAAGCGCTCCCGCTGCTCACCGGCCCGCGCCTTCGACGAGGCGACTCACCGCCGGGAGGCGCTCCTGCACCATCTCCTCTCCCTCTTCCCCCACATGGATCCCCAGTTACTTGAAAGAGCTCTTGAGGCATCTGGAGATGATATAGATTCTGCTATAAAGAGTTTGAACGAGCTGTGCCTGGAATCGGCTGCGGTAGGTGATTCCAATAGCGTCCTGCCAGCCGCTCTTAAGTTATCAGCTGAAGGTGTTGTTAATAATGGACATTTGGATGTGCTCACTGAAAACCCACATGCTACAGAAAACTTTCAGACAAATCATCATGGTTCTGAGTGGGTTGAGCTATTTGTTAGAGAGATGATGAGTGCATCAGACATAGATGATGCGCGGGCTCGTGCCTCAAGAGCCCTGGAGGCATTGGAGAAATCCATAATGGAGCGAGCAGGAACTGAAGCAGTGCATAATTTGCACAAGGAAAATGTGATGCTGAAGGAGCAACTGGCAATATATC-TGAG-AGAGAACGCTGTTCTGAA-GAGGGGGGTTGCTATCC-AACATGAACGTCAAAAAGAGTTTGACGAGAGGACTCAGGAGGTTCATAGCCTGAAACAACTGGTTTTGCAGTATCA-GGAACAGATAAAAACTCTTGAGATAAATAATTATGCACTTAGAGTGCATCTGAAGCAAGCTCAGCAGAACAATTCTATGCCTGGGCGTTTCCCTCCTGATGTCTTTTAACAGATTTTGAGGGCAATATTCCCTCTCATAGTCTTATACTCAATCATACCAAGATATCATATGATGCAAGGGGTTGACCTATTGCTCATGGTGTGGTTAGACACTTAGACTATTCACCCTTACGTCCAAATCATAAACAAGCAACGATCCTCAAAATGGAGAAAGGCAAGCAACGGTGAAGCATCAATTGAGGTGTAGATTAATGTGTGCACCAGGAAGCTTGAGTGCTTGACCCTTCTCTCAGACCATTGATTGTATGTAAAGTATGGTGAGATGTATTGTAGCATGTAATTCAAAGTATGAAAGGACCTGTTCACTGTATTGTAGTAGCATGTAATACAATTTATACAAAGCATGAGAGGATCTGTTCAAAAAAAAAAAAAAAAAAA]

[+] EMBL CB624253             [CCAACCCCCCCCCCCCCAAAAAAAAAAAGAAAAAGAAAAAAAAACCAGCAAATTTCCCTTCCCATGCGACGCGACCTCCTCCTCGGCGACTAGCCGGCGAACTCGCGCACGCCACCTCGGCCCACCCAGGCCCAGGCCCACCTCGCCGTGGATCGCCGGAGTAGGGGGTTGCCGGCCGGAGCGGCGGCTACCACCAGATGGTCGGCGGCGGGGGCGAGTAGCGCGACGGCGGCGGCGAGGACGACGAGCGGCGGACGGATCTGCGGCGCGGCGGGGCGGCGGGGGCGGGGGCCACCATGTCTGCCGTAGTGTGTGGGAAGAGGTCCTCCTCCATCTTCGGCGACGAGCTCATCCCTTCCTCCCCT CCCTCCCCATACCCTCCCTATCACCACAACCACCGAGGGAAGCGCTCCCGCAGCTAACCGGCCCGCGCCTTCGACGAGGCGAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CF589231             [                                                CAAATTTCCCTTCCCATGCGACGCGACCTCCTCCTCGGCGACTAGCCGGCGAACTCGCGCACGCCACCTCGGCCCACCCAGGCCCAGGCCCACCTCGCCGTGGATCGCCGGAGTAGGGGGTTGCCGGCCGGAGCGGCGGCTACCACCAGATGGTCGGCGGCGGGGGCGAGTAGCGCGACGGCGGCGGCGAGGACGACGAGCGGCGGACGGATCTGCGGCGCGGCGGGGCGGCGGGGGCGGGGGCCACCATGTCTGCCGTAGTGTGTGGGAAGAGGTCCTCCTCCATCTTCGGCGACGAGCTCATCCCTTCCTCCCTTCCCCTCCCCATACCCTCCCCACCACCACCACCACCCCGCCAAGCGCTCCCGCTGCTCCCCGGCCCGCGCCTTCGACGAGGCGACTCACCGCCGGGAGGCGCTCCTGCACCATCTCCTCTCCCTCTTCCCCCACATGGATCCCCAGTTACTTGAAAGAGCTCTTGAGGCATCTGGAGATGATATAGATTCTGCTATAAAGAGTTTGAACGAGCTGTGCCTGGAATCGGCTGCGGTAGGTGATTCCAATAGCGTCCTGCCAGCCGCTCTTAAGTTATCAGCTGAAGGTGTTGTTAATAATGGACATTTGGATGTGCTCACTGAAAACCCACATGCTACAGAAAACTTTCAGACAAATCATCATGGTTCTGAGTGGGTTGAGCTATTTGTTAGAGAGATGATGAGTGCATCAGACATAGATGATGCGCGGGCTCGTGCCTCAAGAGCCCTGGAGGCATTGGAGAAATCCATAATGGAGCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AU175191             [                                                                                                                               AGGCCCAGGCCCACNTCGCCGTGGATCGCCGGAGTAGGGGGTTGCCGGCCGGAGCGGCGGCTACCACCAGATGGTCGGCGGCGGGGGCGAGTAGCGCGACGGCGGCGGCGAGGACGACGAGCGGCGGACGGATCNNCGGCGCGGCGGGGCGGCGGGGGCGGGGGCCACCATNTCTGCCGTAGTGTGTGGGAAGAGGTCCTCCTCCATCTTCGGCGACGAGCTCATNCCTTCCTCCCCT CCCTCCCCATCCCCTCCCCACCACCACCACCACNCCGCCAAGCGCTCCCGCTGCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CB618196             [                                                                                                                                                                                                                                                                                                                                                                                                                                                      GACCAGGCGACTCACCGCCGGGAGGCGCTCCTGCACCATCTCCTCTCCCTCTTCCCCCACATGGATCCCCAGTTACTTGAAAGAGCTCTTGAGGCATCTGGAGATGATATAGATTCTGCTATAAAGAGTTTGAACGAGCTGTGCCTGGAATCGGCTGCGGTAGGTGATTCCAATAGCGTCCTGCCAGCCGCTCTTAAGTTATCAGCTGAAGGTGTTGTTAATAATGGACATTTGGATGTGCTCACTGAAAACCCACATGCTACAGAAAACTTTCAGACAAATCATCATGGTTCTGAGTGGGTTGAGCTATTTGTTAGAGAGATGATGAGTGCATCAGACATAGATGATGCGCGGGCTCGTGCCTCAAGAGCCCTGGAGGCATTGGAGAAATCCATAATGGAGCGAGCAGGAACTGAAGCAGTGCATAATTTGCACAAGGAAAATGTGATGCTGAAGGAGCAACTGGCAATATATC TGAG AGAGAACGCTGTTCTGAA GAGGGGGGTTGCTATCC AACATGAACGTCAAAAAGAGTTTGACGAGAGGACTCAGGAGGTTCATAGCCTGAAACAACTGGTTTTGCAGTATCA GGAACAGATAAAAACTCTTGAGATAAATAATTATGCACTTAGAGTGCATCTGAAGCAAGCTCAGCAGAACAATTCTATGCCTGGGCGTTTCCCTCCTGATGTCTTTTAACAGATTTTGAGGGGCATATTCCCTCTCATAGTCTTATACTCAATCATACCAAGATATCATATGATGCAAGGGGTTGAC                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CB622765             [                                                                                                                                                                                                                                                                                                                                                                                                                                                      GACGAGGCGACTCACCGCCGGGAGGCGCTCCTGCACCATCTCCTCTCCCTCTTCCCCCACATGGATCCCCAGTTACTTGAAAGAGCTCTTGAGGCATCTGGAGATGATATAGATTCTGCTATAAAGAGTTTGAACGAGCTGTGCCTGGAATCGGCTGCGGTAGGTGATTCCAATAGCGTCCTGCCAGCCGCTCTTAAGTTATCAGCTGAAGGTGTTGTTAATAATGGACATTTGGATGTGCTCACTGAAAACCCACATGCTACAGAAAACTTTCAGACAAATCATCATGGTTCTGAGTGGGTTGAGCTATTTGTTAGAGAGATGATGAGTGCATCAGACATAGATGATGCGCGGGCTCGTGCCTCAAGAGCCCTGGAGGCATTGGAGAAATCCATAATGGAGCGAGCAGGAACTGAAGCAGTGCATAATTTGCACAAGGAAAATGTGATGCTGAAGGAGCAACTGGCAATATATC TGAG AGAGAACGCTGTTCTGAA GAGGGGGGTTGCTATCC AACATGAACGTCAAAAAGAGTTTGACGAGAGGACTCAGGAGGTTCATAGCCTGAAACAACTGGTTTTGCAGTATCA GGAACAGATAAAAACTCTTGAGATAAATAATTATGCACTTAGAGTGCATCTGAAGCAAGCTCAGCAGAACAATTCTATGCCTGNGCGTTTCCCTCCTGATGTCTTTTAACAGATTTTGAGGGCAATATTCCCTCTCATAGTCTTATACTCAATCATACCAAGATATCATATGATGCAAGGNGTTGACCTATTGCTCATGGTGTGG                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CB000856             [                                                                                                                                                                                                                                                                                                                                                                                                                                                      GACGAGGCGACTCACCGCCGGGAGGCGCTCCTGCACCATCTCCTCTCCCTCTTCCCCCACATGGATCCCCAGTTACTTGAAAGAGCTCTTGAGGCATCTGGAGATGATATAGATTCTGCTATAAAGAGTTTGAACGAGCTGTGCCTGGAATCGGCTGCGGTAGGTGATTCCAATAGCGTCCTGCCAGCCGCTCTTAAGTTATCGGCTGAAGGTGTTGTTAATAATGGACATTTGGATGTGCTCACTGAAAACCCACATGCTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU101393             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AATATATCTTGAGAAGAGACCGCTGTTCTGAANAAGGGCGGTTGCTATCCAAACATGAACGTCAAAAAGAGTTTGACGAGAGGACTCAGGAGGTTCATAGCCTGAAACAACTGGTTTTGCAGTATCAGGGAACAGATAAAAACTCTTGAGATAAATAATTATGCACTTAGAGTGCATCTGAAGCAAGCTCAGCAGAACAATTCTATGCCTGGGCGTTTCCCTCCTGATGTCTTTTAACAGATCTTGAGGGCAATATTCCCTCTCATAGTCTTATACTCAATCATACCAAGATATCATATGATGCAAGGGGTTGACCTATTGCTCATGGTGTGGTTAGACACTTAGACTATTCACCCTTACGTCCAAATCATAAACAAGCAACGATCCTCAAAATGGAGAAAGGCAAGCAACGGTGAAGCATCAATTGAGGTGTAGATTAATGTGTGCACCAGGAAGCTTGAGTGCTTGACCCTTCTCTCAGACCATTGATTGTATGTAAAGTATGGTGAGATGTATTGTAGCATGTAATTCAAAGTATGAAAGGACCTGTTCACTGTATTGTAGTAGCATGTAATACAATTTATACAAAGCATGAGAGGATCTGTTCAAAAAAAAAAAAAAAAAAA]




>consensus_14072#0
CCAACCCCCCCCCCCCCAAAAAAAAAAAGAAAAAGAAAAAAAAACCAGCAAATTTCCCTT
CCCATGCGACGCGACCTCCTCCTCGGCGACTAGCCGGCGAACTCGCGCACGCCACCTCGG
CCCACCCAGGCCCAGGCCCACCTCGCCGTGGATCGCCGGAGTAGGGGGTTGCCGGCCGGA
GCGGCGGCTACCACCAGATGGTCGGCGGCGGGGGCGAGTAGCGCGACGGCGGCGGCGAGG
ACGACGAGCGGCGGACGGATCTGCGGCGCGGCGGGGCGGCGGGGGCGGGGGCCACCATGT
CTGCCGTAGTGTGTGGGAAGAGGTCCTCCTCCATCTTCGGCGACGAGCTCATCCCTTCCT
CCCCTCCCTCCCCATACCCTCCCCACCACCACCACCACCCCGCCAAGCGCTCCCGCTGCT
CACCGGCCCGCGCCTTCGACGAGGCGACTCACCGCCGGGAGGCGCTCCTGCACCATCTCC
TCTCCCTCTTCCCCCACATGGATCCCCAGTTACTTGAAAGAGCTCTTGAGGCATCTGGAG
ATGATATAGATTCTGCTATAAAGAGTTTGAACGAGCTGTGCCTGGAATCGGCTGCGGTAG
GTGATTCCAATAGCGTCCTGCCAGCCGCTCTTAAGTTATCAGCTGAAGGTGTTGTTAATA
ATGGACATTTGGATGTGCTCACTGAAAACCCACATGCTACAGAAAACTTTCAGACAAATC
ATCATGGTTCTGAGTGGGTTGAGCTATTTGTTAGAGAGATGATGAGTGCATCAGACATAG
ATGATGCGCGGGCTCGTGCCTCAAGAGCCCTGGAGGCATTGGAGAAATCCATAATGGAGC
GAGCAGGAACTGAAGCAGTGCATAATTTGCACAAGGAAAATGTGATGCTGAAGGAGCAAC
TGGCAATATATCTGAGAGAGAACGCTGTTCTGAAGAGGGGGGTTGCTATCCAACATGAAC
GTCAAAAAGAGTTTGACGAGAGGACTCAGGAGGTTCATAGCCTGAAACAACTGGTTTTGC
AGTATCAGGAACAGATAAAAACTCTTGAGATAAATAATTATGCACTTAGAGTGCATCTGA
AGCAAGCTCAGCAGAACAATTCTATGCCTGGGCGTTTCCCTCCTGATGTCTTTTAACAGA
TTTTGAGGGCAATATTCCCTCTCATAGTCTTATACTCAATCATACCAAGATATCATATGA
TGCAAGGGGTTGACCTATTGCTCATGGTGTGGTTAGACACTTAGACTATTCACCCTTACG
TCCAAATCATAAACAAGCAACGATCCTCAAAATGGAGAAAGGCAAGCAACGGTGAAGCAT
CAATTGAGGTGTAGATTAATGTGTGCACCAGGAAGCTTGAGTGCTTGACCCTTCTCTCAG
ACCATTGATTGTATGTAAAGTATGGTGAGATGTATTGTAGCATGTAATTCAAAGTATGAA
AGGACCTGTTCACTGTATTGTAGTAGCATGTAATACAATTTATACAAAGCATGAGAGGAT
CTGTTCAAAAAAAAAAAAAAAAAAA

consensusID : consensus_14072#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1341
fasta sequence

                              [AAAAAACCAGCAAATTTCCCTTCCCATGCGACGCGACCTCCTCCTCGGCGACTAGCCGGCGAACTCGCGCACGCCACCTCGGCCCACCCAGGCCCAGGCCCACCTCGCCGTGGATCGCCGGAGTAGGGGGTTGCCGGCCGGAGAGGCGGCTACCACCAGATGGTCGGCGGCGGGGGCGAGTAGCGCGACGGCGGCGGCGAGGACGACGAGCGGCGGACGGATCTGCGGCGCGGCGGGGCGGCGGGGGCGGGGGCCACATGGATCCCCAGTTACTTGAAAGAGCTCTTGAGGCATCTGGAGATGATATAGATTCTGCTATAAAGAGTTTGAACGAGCTGTGCCTGGAATCGGCTGCGGTAGGTGATTCCAATAGCGTCCTGCCAGCCGCTCTTAAGTTATCGGCTGAAGGTGTTGTTAATAATGGACATTTGGATGTGCTCACTGAAAACCCACATGCTACAGAAAACTTTCAGACAAATCATCATGGTTCTGAGTGGGTTGAGCTATTTGTTAGAGAGATGATGAGTGCATCAGACATAGATGATGCGCGGGCTCGTGCCTCAAGAGCCCTGGAGGCATTGGAGAAATCCATAATGGAGCGAGCAGGAACTGAAGCAGTGCATAA-TTTGC-ACAAGGAAAATGTGATGCTGAAGGAGCAACTGGCAATATATCTGAGAGAGAACGCTGTTCTGAAGAGGGCGGTTGCTATCCAACATGAACGTCAAAAAGAGTTTGACGAGAGGACTCAGGAGGTTCATAGCCTGAAACAACTGGTTTTGCAGTATCAGGAACAGATAAAAACTCTTGAGATAAATAATTATGCACTTAGAGTGCATCTGAAGCAAGCTCAGCAGAACAATTCTATGCCTGGGCGTTTCCCTCCTGATGTCTTTTAACAGATCTTGAGGGCAATATTCCCTCTCATAGTCTTATACTCAATCATACCAAGATATCATATGATGCA-AGGGGTTGACCTATTGCTCATGGTGTGGTTAGACACTTAGACTATTCACCCTTACGT-CCAAATCATAAACA-AGCAACGATCCTCAAAATGGAGAAAGGCAAGC-AACGGTGAAGCATCAATTGAGGTGTAGATTAATGTGTGCACCA-GGAAGCTTGAGTGCTTGACCCTTCTCTCAGACCATTGATTGTATGTAAAGTATGGTGAGATGTATTGTAGCATGTAATTCA-AAGTATGAAAGG-ACCTGTTC-ACTGTATTGTAGTAGCATGTAATACAATTTATACAAAG-CATGAGAGGATCTGTTCATTGTATCGTACGTATCCACTGATATATTTATTCCGATAAAAGAATGCTTTTC---TGAAAAAAAAAAAAAAAAAAGG]

[+] EMBL AK105238             [AAAAAACCAGCAAATTTCCCTTCCCATGCGACGCGACCTCCTCCTCGGCGACTAGCCGGCGAACTCGCGCACGCCACCTCGGCCCACCCAGGCCCAGGCCCACCTCGCCGTGGATCGCCGGAGTAGGGGGTTGCCGGCCGGAGAGGCGGCTACCACCAGATGGTCGGCGGCGGGGGCGAGTAGCGCGACGGCGGCGGCGAGGACGACGAGCGGCGGACGGATCTGCGGCGCGGCGGGGCGGCGGGGGCGGGGGCCACATGGATCCCCAGTTACTTGAAAGAGCTCTTGAGGCATCTGGAGATGATATAGATTCTGCTATAAAGAGTTTGAACGAGCTGTGCCTGGAATCGGCTGCGGTAGGTGATTCCAATAGCGTCCTGCCAGCCGCTCTTAAGTTATCGGCTGAAGGTGTTGTTAATAATGGACATTTGGATGTGCTCACTGAAAACCCACATGCTACAGAAAACTTTCAGACAAATCATCATGGTTCTGAGTGGGTTGAGCTATTTGTTAGAGAGATGATGAGTGCATCAGACATAGATGATGCGCGGGCTCGTGCCTCAAGAGCCCTGGAGGCATTGGAGAAATCCATAATGGAGCGAGCAGGAACTGAAGCAGTGCATAA TTTGC ACAAGGAAAATGTGATGCTGAAGGAGCAACTGGCAATATATCTGAGAGAGAACGCTGTTCTGAAGAGGGCGGTTGCTATCCAACATGAACGTCAAAAAGAGTTTGACGAGAGGACTCAGGAGGTTCATAGCCTGAAACAACTGGTTTTGCAGTATCAGGAACAGATAAAAACTCTTGAGATAAATAATTATGCACTTAGAGTGCATCTGAAGCAAGCTCAGCAGAACAATTCTATGCCTGGGCGTTTCCCTCCTGATGTCTTTTAACAGATCTTGAGGGCAATATTCCCTCTCATAGTCTTATACTCAATCATACCAAGATATCATATGATGCA AGGGGTTGACCTATTGCTCATGGTGTGGTTAGACACTTAGACTATTCACCCTTACGT CCAAATCATAAACA AGCAACGATCCTCAAAATGGAGAAAGGCAAGC AACGGTGAAGCATCAATTGAGGTGTAGATTAATGTGTGCACCA GGAAGCTTGAGTGCTTGACCCTTCTCTCAGACCATTGATTGTATGTAAAGTATGGTGAGATGTATTGTAGCATGTAATTCA AAGTATGAAAGG ACCTGTTC ACTGTATTGTAGTAGCATGTAATACAATTTATACAAAG CATGAGAGGATCTGTTCATTGTATCGTACGTATCCACTGATATATTTATTCCGATAAAAGAATGC                              ]
[+] EMBL C74113               [                                                                                                                                                                                                                                                                                                                                                    CCTGGAATCGGCTGCGGTAGGTGATTCCAATAGCGTCCTGCCAGCCGCTCTTAAGTTATCGGCTGAAGGTGTTGTTAATAATGGACATTTGGATGTGCTCACTGAAAACCCACATGCTACAGAAAACTTTCAGACAAATCATCATGGTTCTGAGTGGGTTGAGCTATTTGTTAGAGAGATGATGAGTGCATCAGACATAGATGATGCGCGGGCTCGTGCCTCAAGAGCCCTGGAGGCATTGGAGAAATCCATAATGGAGCGAGCAGGAACTGAAGCAGTTCATAATTTTGCNCCAAGGGAAATGTGATGCTGAAGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CF321888             [                                                                                                                                                                                                                                                                                                                                                                                       TCCTGCCAGCCGCTCTTAAGTTATCGGCTGAAGGTGTTGTTAATAATGGACATTTGGATGTGCTCACTGAAAACCCACATGCTACAGAAAACTTTCAGACAAATCATCATGGTTCTGAGTGGGTTGAGCTATTTGTTAGAGAGATGATGAGTGCATCAGACATAGATGATGCGCGGGCTCGTGCCTCAAGAGCCCTGGAGGCATTGGAGAAATCCATAATGGAGCGAGCAGGAACTGAAGCAGTGCATAA TTTGC ACAAGGAAAATGTGATGCTGAAGGAGCAACTGGCAATATATCTGAGAGAGAACGCTGTTCTGAAGAGGGCGGTTGCTATCCAACATGAACGTCAAAAAGAGTTTGACGAGAGGACTCAGGAGGTTCATAGCCTGAAACAACTGGTTTTGCAGTATCAGGAACAGATAAAAACTCTTGAGATAAATAATTATGCACTTAGAGTGCATCTGAAGCAAGCTCAGCAGAACAATTCTATGCCTGGGCGTTTCCCTCCTGATGTCTTTTAACAGATCTTGAGGGCAATATTCCCTCTCATAGTCTTATACTCAATCATACCAAGATATCA                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CB624254             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GAGTGCATCAGACATAGATGATGCGCGGGGTCGTGCCTCAAGAGCCCTGGAGGCATTGGAGAAATCCATAATGGAGCGAGCAGGAACTGAAGCAGTGCATAA TTTGC ACAAGGAAAATGTGATGCTGAAGGAGCAACTGGCAATATATCTGAGAGAGAACGCTGTTCTGAAGAGGGGGGTTGCTATCCAACATGAACGTCAAAAAGAGTTTGACGAGAGGACTCAGGAGGTTCATAGCCTGAAACAACTGGTTTTGCAGTATCAGGAACAGATAAAAACTCTTGAGATAAATAATTATGCACTTAGAGTGCATCTGAAGCAAGCTCAGCAGAACAATTCTATGCCTGGGCGTTTCCCTCCTGATGTCTTTTAACAGATTTTGAGGGCAATATTCCCTCTCATAGTCTTATACTCAATCATACCAAGATATCATATGATGCA AGGGGTTGACCTATTGCTCATGGTGTGGTTAGACACTTAGACTATTCACCCTTACGT CCAAATCATAAACA AGCAACGATCCTCAAAATGGAGAAAAGCAAGC AACGGTGAAGCATCAATTGAGGTGTAGATTAATGTGTGCACCA GAAAGCTTGAGTGCTTGACCCTTGTCTCAGACCATTGATTGTATGTAAAGTATGGTGAGATGTATTGTAGCATGTAATTCATAAGTAGGAAAGGAACCTGTTCTCCTGTATTGTAGTAGCATGTAATACAATTTATACAAAGTCATGAGAGGATGTGTTCATAGGGTCGTACGTATCCGCTGATATATTTATTTCGATAAAAaaggggaat                           ]
[-] EMBL CB669306             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TTGGAGAAATCCATAATGGAGCGAGCAGGAACTGAAGCAGTGCATAA TTTGC ACAAGGAAAATGTGATGCTGAAGGAGCAACTGGCAATATATCTGAGAGAGAACGCTGTTCTGAAGAGGGCGGTTGCTATCCAACATGAACGTCAAAAAGAGTTTGACGAGAGGACTCAGGAGGTTCATAGCCTGAAACAACTGGTTTTGCAGTATCAGGAACAGATAAAAACTCTTGAGATAAATAATTATGCACTTAGAGTGCATCTGAAGCAAGCTCAGCAGAACAATTCTATGCCTGGGCGTTTCCCTCCTGATGTCTTTTAACAGATCTTGAGGGCAATATTCCCTCTCATAGTCTTATACTCAATCATACCAAGATATCATATGATGCA AGGGGTTGACCTATTGCTCATGGTGTGGTTAGACACTTAGACTATTCACCCTTACGT CCAAATCATAAACA AGCAACGATCCTCAAAATGGAGAAAGGCAAGC AACGGTGAAGCATCAATTGAGGTGTAGATTAATGTGTGCACCA GGAAGCTTGAGTGCTTGACCCTTCTCTCAGACCATTGATTGTATGTAAAGTATGGTGAGATGTATTGTAGCATGTAATTCA AAGTATGAAAGG ACCTGTTC ACTGTATTGTAGTAGCATGTAATACAATTTATACAAAG CATGAGAGGATCTGTTCATTGTATCGTACGTATCCACTGATATATTTATTCGGATAAAAGAATGCTTTTC   TGAAAAAAAAAAAAAAAAAAGG]
[+] EMBL BQ908277             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GATGTCTTTTAACAGATTTTGAGGGCCATATTCCCTCTCATAGTCTTATACTCNATCATACCNAGATATCATATGATGCACAGGGGTTGACCTATTGCTCATGGTGTGGTTAGACACTTAGACTATTCACCCTTACGTCCCNAATCATAAACACAGCAACGATCCTCCAAATGGAGAAAAGCCAGCNNACGGTGAAGCATCNATTGAGGTGTAGATTAATGTGTGCACCACGGAAGCTTGAGTGCTTGACCCTTCTCTCAGACCNTTGATTGTATGTAAAGTATGGTGAGATGTATTGTAGCATGTAATTCC AAGTATGAAAGG ACCTGTTC ACTGTATTGTAGTAGCATGTAATACCATTTATACCAAG CCTGAGAGGATCTGTTCCTTGTATCGTACGTATCCCCTGATATATTTATTCCGATAAAAGAATGCTTATC   AGATGAAAAAA           ]
[-] EMBL CF321889             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                tATGCA AGGGGTTGACCTATTGCTCATGGTGTGGTTATACCCTTAGACTATTCACCCTTACGT CCAAATCATAAACA AGCAACGATCCTCAAAATGGAGAAAGGCAAGC AACGGTGAAGCATCAATTGAGGTGTAGATTAATGTGTGCCCCA GGAAGCTTGAGTGCTTGACCCTTTTTTCAGACCATTGATTGTATGTAAAGTATGGTTAGATGTATTGTAGCATGTAATTCA AAGTAAAAAAGA ACCTGTTC CCTGTATTGTAGTAGCATGTAATACCATTTATACAAAG CATGAGAGGATCTGTTCATTGTATTGTACGTATCCCCTGATATATTTATTCCGATAAAAGAATGGTTATCAGATGAAAAAAAAAAAAAAAAAAaa]




>consensus_14072#1
AAAAAACCAGCAAATTTCCCTTCCCATGCGACGCGACCTCCTCCTCGGCGACTAGCCGGC
GAACTCGCGCACGCCACCTCGGCCCACCCAGGCCCAGGCCCACCTCGCCGTGGATCGCCG
GAGTAGGGGGTTGCCGGCCGGAGAGGCGGCTACCACCAGATGGTCGGCGGCGGGGGCGAG
TAGCGCGACGGCGGCGGCGAGGACGACGAGCGGCGGACGGATCTGCGGCGCGGCGGGGCG
GCGGGGGCGGGGGCCACATGGATCCCCAGTTACTTGAAAGAGCTCTTGAGGCATCTGGAG
ATGATATAGATTCTGCTATAAAGAGTTTGAACGAGCTGTGCCTGGAATCGGCTGCGGTAG
GTGATTCCAATAGCGTCCTGCCAGCCGCTCTTAAGTTATCGGCTGAAGGTGTTGTTAATA
ATGGACATTTGGATGTGCTCACTGAAAACCCACATGCTACAGAAAACTTTCAGACAAATC
ATCATGGTTCTGAGTGGGTTGAGCTATTTGTTAGAGAGATGATGAGTGCATCAGACATAG
ATGATGCGCGGGCTCGTGCCTCAAGAGCCCTGGAGGCATTGGAGAAATCCATAATGGAGC
GAGCAGGAACTGAAGCAGTGCATAATTTGCACAAGGAAAATGTGATGCTGAAGGAGCAAC
TGGCAATATATCTGAGAGAGAACGCTGTTCTGAAGAGGGCGGTTGCTATCCAACATGAAC
GTCAAAAAGAGTTTGACGAGAGGACTCAGGAGGTTCATAGCCTGAAACAACTGGTTTTGC
AGTATCAGGAACAGATAAAAACTCTTGAGATAAATAATTATGCACTTAGAGTGCATCTGA
AGCAAGCTCAGCAGAACAATTCTATGCCTGGGCGTTTCCCTCCTGATGTCTTTTAACAGA
TCTTGAGGGCAATATTCCCTCTCATAGTCTTATACTCAATCATACCAAGATATCATATGA
TGCAAGGGGTTGACCTATTGCTCATGGTGTGGTTAGACACTTAGACTATTCACCCTTACG
TCCAAATCATAAACAAGCAACGATCCTCAAAATGGAGAAAGGCAAGCAACGGTGAAGCAT
CAATTGAGGTGTAGATTAATGTGTGCACCAGGAAGCTTGAGTGCTTGACCCTTCTCTCAG
ACCATTGATTGTATGTAAAGTATGGTGAGATGTATTGTAGCATGTAATTCAAAGTATGAA
AGGACCTGTTCACTGTATTGTAGTAGCATGTAATACAATTTATACAAAGCATGAGAGGAT
CTGTTCATTGTATCGTACGTATCCACTGATATATTTATTCCGATAAAAGAATGCTTTTCT
GAAAAAAAAAAAAAAAAAAGG

consensusID : consensus_14072#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 222
fasta sequence

                              [AGGNCAGGCCCACCTCGCCGTGGATCNCCNGAGTAGGGGGTTGCCGGCCGGAGCGNNNTGANCCACCATGATGGTCGGCGGCGGGNGCGAGTANGNGACGGCGCTGCGAGGACGACGAGCGGCGGACGGATCTGCGGCGGGCGGGGCNGCTNGNTCGGGGGCACCATGTCTGCCGTAGTGTGTNGGAAGAGGTCCTCCTNCATCTTCGGCGACGAGCTCATC]

[+] EMBL AU069512             [AGGNCAGGCCCACCTCGCCGTGGATCNCCNGAGTAGGGGGTTGCCGGCCGGAGCGNNNTGANCCACCATGATGGTCGGCGGCGGGNGCGAGTANGNGACGGCGCTGCGAGGACGACGAGCGGCGGACGGATCTGCGGCGGGCGGGGCNGCTNGNTCGGGGGCACCATGTCTGCCGTAGTGTGTNGGAAGAGGTCCTCCTNCATCTTCGGCGACGAGCTCATC]




>consensus_14072#2
AGGNCAGGCCCACCTCGCCGTGGATCNCCNGAGTAGGGGGTTGCCGGCCGGAGCGNNNTG
ANCCACCATGATGGTCGGCGGCGGGNGCGAGTANGNGACGGCGCTGCGAGGACGACGAGC
GGCGGACGGATCTGCGGCGGGCGGGGCNGCTNGNTCGGGGGCACCATGTCTGCCGTAGTG
TGTNGGAAGAGGTCCTCCTNCATCTTCGGCGACGAGCTCATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14072#0      CCAACCCCCCCCCCCCCAAAAAAAAAAAGAAAAAGAAAAAAAAACCAGCAAATTTCCCTT 60
consensus_14072#1      --------------------------------------AAAAAACCAGCAAATTTCCCTT 22
consensus_14072#2      ------------------------------------------------------------
                                                                                   

consensus_14072#0      CCCATGCGACGCGACCTCCTCCTCGGCGACTAGCCGGCGAACTCGCGCACGCCACCTCGG 120
consensus_14072#1      CCCATGCGACGCGACCTCCTCCTCGGCGACTAGCCGGCGAACTCGCGCACGCCACCTCGG 82
consensus_14072#2      ------------------------------------------------------------
                                                                                   

consensus_14072#0      CCCACCCAGGCCCAGGCCCACCTCGCCGTGGATCGCCGGAGTAGGGGGTTGCCGGCCGGA 180
consensus_14072#1      CCCACCCAGGCCCAGGCCCACCTCGCCGTGGATCGCCGGAGTAGGGGGTTGCCGGCCGGA 142
consensus_14072#2      --------AGGNCAGGCCCACCTCGCCGTGGATCNCCNGAGTAGGGGGTTGCCGGCCGGA 52
                                *  ********************** ** **********************

consensus_14072#0      GCGGCGGCTACCACCA-GATGGTCGGCGGCGGGGGCGAGTAGCGCGACGGCGGCGGCGAG 239
consensus_14072#1      GAGGCGGCTACCACCA-GATGGTCGGCGGCGGGGGCGAGTAGCGCGACGGCGGCGGCGAG 201
consensus_14072#2      GCGNNNTGANCCACCATGATGGTCGGCGGCGGGNGCGAGTAN-GNGACGGCG-CTGCGAG 110
                       * *       ****** **************** *******  * ******* * *****

consensus_14072#0      GACGACGAGCGGCGGACGGATCTGCGGCGCGGCGGGGCGGCGGGGGCGGGGGCCACCATG 299
consensus_14072#1      GACGACGAGCGGCGGACGGATCTGCGGCGCGGCGGGGCGGCGGGGGCGGGGGCCAC---- 257
consensus_14072#2      GACGACGAGCGGCGGACGGATCTGCGGCG-GGCGGGGCNGCTNGNTCGGGGGCACCATGT 169
                       ***************************** ******** **  *  *******  *    

consensus_14072#0      TCTGCCGTAGTGTGTGGGAAGAGGTCCTCCTCCATCTTCGGCGACGAGCTCATCCCTTCC 359
consensus_14072#1      ------------------------------------------------------------
consensus_14072#2      CTGCCGTAGTGTGTNGGAAGAGGTCCTCCTNCATCTTCGGCGACGAGCTCATC------- 222
                                                                                   

consensus_14072#0      TCCCCTCCCTCCCCATACCCTCCCCACCACCACCACCACCCCGCCAAGCGCTCCCGCTGC 419
consensus_14072#1      ------------------------------------------------------------
consensus_14072#2      ------------------------------------------------------------
                                                                                   

consensus_14072#0      TCACCGGCCCGCGCCTTCGACGAGGCGACTCACCGCCGGGAGGCGCTCCTGCACCATCTC 479
consensus_14072#1      ------------------------------------------------------------
consensus_14072#2      ------------------------------------------------------------
                                                                                   

consensus_14072#0      CTCTCCCTCTTCCCCCACATGGATCCCCAGTTACTTGAAAGAGCTCTTGAGGCATCTGGA 539
consensus_14072#1      ------------------ATGGATCCCCAGTTACTTGAAAGAGCTCTTGAGGCATCTGGA 299
consensus_14072#2      ------------------------------------------------------------
                                                                                   

consensus_14072#0      GATGATATAGATTCTGCTATAAAGAGTTTGAACGAGCTGTGCCTGGAATCGGCTGCGGTA 599
consensus_14072#1      GATGATATAGATTCTGCTATAAAGAGTTTGAACGAGCTGTGCCTGGAATCGGCTGCGGTA 359
consensus_14072#2      ------------------------------------------------------------
                                                                                   

consensus_14072#0      GGTGATTCCAATAGCGTCCTGCCAGCCGCTCTTAAGTTATCAGCTGAAGGTGTTGTTAAT 659
consensus_14072#1      GGTGATTCCAATAGCGTCCTGCCAGCCGCTCTTAAGTTATCGGCTGAAGGTGTTGTTAAT 419
consensus_14072#2      ------------------------------------------------------------
                                                                                   

consensus_14072#0      AATGGACATTTGGATGTGCTCACTGAAAACCCACATGCTACAGAAAACTTTCAGACAAAT 719
consensus_14072#1      AATGGACATTTGGATGTGCTCACTGAAAACCCACATGCTACAGAAAACTTTCAGACAAAT 479
consensus_14072#2      ------------------------------------------------------------
                                                                                   

consensus_14072#0      CATCATGGTTCTGAGTGGGTTGAGCTATTTGTTAGAGAGATGATGAGTGCATCAGACATA 779
consensus_14072#1      CATCATGGTTCTGAGTGGGTTGAGCTATTTGTTAGAGAGATGATGAGTGCATCAGACATA 539
consensus_14072#2      ------------------------------------------------------------
                                                                                   

consensus_14072#0      GATGATGCGCGGGCTCGTGCCTCAAGAGCCCTGGAGGCATTGGAGAAATCCATAATGGAG 839
consensus_14072#1      GATGATGCGCGGGCTCGTGCCTCAAGAGCCCTGGAGGCATTGGAGAAATCCATAATGGAG 599
consensus_14072#2      ------------------------------------------------------------
                                                                                   

consensus_14072#0      CGAGCAGGAACTGAAGCAGTGCATAATTTGCACAAGGAAAATGTGATGCTGAAGGAGCAA 899
consensus_14072#1      CGAGCAGGAACTGAAGCAGTGCATAATTTGCACAAGGAAAATGTGATGCTGAAGGAGCAA 659
consensus_14072#2      ------------------------------------------------------------
                                                                                   

consensus_14072#0      CTGGCAATATATCTGAGAGAGAACGCTGTTCTGAAGAGGGGGGTTGCTATCCAACATGAA 959
consensus_14072#1      CTGGCAATATATCTGAGAGAGAACGCTGTTCTGAAGAGGGCGGTTGCTATCCAACATGAA 719
consensus_14072#2      ------------------------------------------------------------
                                                                                   

consensus_14072#0      CGTCAAAAAGAGTTTGACGAGAGGACTCAGGAGGTTCATAGCCTGAAACAACTGGTTTTG 1019
consensus_14072#1      CGTCAAAAAGAGTTTGACGAGAGGACTCAGGAGGTTCATAGCCTGAAACAACTGGTTTTG 779
consensus_14072#2      ------------------------------------------------------------
                                                                                   

consensus_14072#0      CAGTATCAGGAACAGATAAAAACTCTTGAGATAAATAATTATGCACTTAGAGTGCATCTG 1079
consensus_14072#1      CAGTATCAGGAACAGATAAAAACTCTTGAGATAAATAATTATGCACTTAGAGTGCATCTG 839
consensus_14072#2      ------------------------------------------------------------
                                                                                   

consensus_14072#0      AAGCAAGCTCAGCAGAACAATTCTATGCCTGGGCGTTTCCCTCCTGATGTCTTTTAACAG 1139
consensus_14072#1      AAGCAAGCTCAGCAGAACAATTCTATGCCTGGGCGTTTCCCTCCTGATGTCTTTTAACAG 899
consensus_14072#2      ------------------------------------------------------------
                                                                                   

consensus_14072#0      ATTTTGAGGGCAATATTCCCTCTCATAGTCTTATACTCAATCATACCAAGATATCATATG 1199
consensus_14072#1      ATCTTGAGGGCAATATTCCCTCTCATAGTCTTATACTCAATCATACCAAGATATCATATG 959
consensus_14072#2      ------------------------------------------------------------
                                                                                   

consensus_14072#0      ATGCAAGGGGTTGACCTATTGCTCATGGTGTGGTTAGACACTTAGACTATTCACCCTTAC 1259
consensus_14072#1      ATGCAAGGGGTTGACCTATTGCTCATGGTGTGGTTAGACACTTAGACTATTCACCCTTAC 1019
consensus_14072#2      ------------------------------------------------------------
                                                                                   

consensus_14072#0      GTCCAAATCATAAACAAGCAACGATCCTCAAAATGGAGAAAGGCAAGCAACGGTGAAGCA 1319
consensus_14072#1      GTCCAAATCATAAACAAGCAACGATCCTCAAAATGGAGAAAGGCAAGCAACGGTGAAGCA 1079
consensus_14072#2      ------------------------------------------------------------
                                                                                   

consensus_14072#0      TCAATTGAGGTGTAGATTAATGTGTGCACCAGGAAGCTTGAGTGCTTGACCCTTCTCTCA 1379
consensus_14072#1      TCAATTGAGGTGTAGATTAATGTGTGCACCAGGAAGCTTGAGTGCTTGACCCTTCTCTCA 1139
consensus_14072#2      ------------------------------------------------------------
                                                                                   

consensus_14072#0      GACCATTGATTGTATGTAAAGTATGGTGAGATGTATTGTAGCATGTAATTCAAAGTATGA 1439
consensus_14072#1      GACCATTGATTGTATGTAAAGTATGGTGAGATGTATTGTAGCATGTAATTCAAAGTATGA 1199
consensus_14072#2      ------------------------------------------------------------
                                                                                   

consensus_14072#0      AAGGACCTGTTCACTGTATTGTAGTAGCATGTAATACAATTTATACAAAGCATGAGAGGA 1499
consensus_14072#1      AAGGACCTGTTCACTGTATTGTAGTAGCATGTAATACAATTTATACAAAGCATGAGAGGA 1259
consensus_14072#2      ------------------------------------------------------------
                                                                                   

consensus_14072#0      TCTGTTCAAAAAAAAAAAAAAAAAAA---------------------------------- 1525
consensus_14072#1      TCTGTTCATTGTATCGTACGTATCCACTGATATATTTATTCCGATAAAAGAATGCTTTTC 1319
consensus_14072#2      ------------------------------------------------------------
                                                                                   

consensus_14072#0      ----------------------
consensus_14072#1      TGAAAAAAAAAAAAAAAAAAGG 1341
consensus_14072#2      ----------------------