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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14075#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1131 fasta sequence
[CAAAGCAACCACCGTACCGCAACCGCAACCGCGAGAGCCGAGAGAGAAGCCTTTTTCCCCGATCGATTCCCTTCTCTCCGCTCCGCATCGCCATGGCCTCCTCAGCACCGACGCCGCCGCCGCTCCTCCCGGTGACCAACCCGGCAGCCGCGGGGTCGTCCCCGGCCGCCACCGCCGTGGGATCTGACGCGCCGATCGCAACCCCGGCGTTCCGGCTCTTCCTGAGCAAGCTCTCCGACTCGGCGCGGCGCTCGCTGTCCGACCGGCGGCCGTGGACGGAGCTGGTCGACCGCTCGGCGTTCTCGCGGCCGGACTCCCTCTCCGACGCCACCTCCCGCCTCCGCCGCAACCTCGCCTACTTCCGCGTCAACTACGCCGCCGTGGTGGCCTTCGCGCTCGGGGCGTCCCTCCTCGCGCACCCCTTCTCGCTCCTCGTCCTCCTCGGCCTCCTCGCCGCCTGGTGCTTCCTCTACCTCTTCCGCGGCTCCGACCAGCCCGTCGTCCTCTTCGGTCGCACCTTCTCCGACCGCGAGACGCTGCTCGGCCTCGTCGTCGCGTCGTTCGTGGCCTTCTTCTTCACCTCCGTCGCGTCGCTCATCATCTCCGGGCTGCTCGTCGGCGGGGCCATCGTCGCCGTCCACGGCGCGTGCCGCATGCCCGAGGACCTCTTCCTCGACGACGCTGACGCCGCCAGCGGCAACAGCGCGGCCCAGGGTCTCCTGTCCTTCCTCGGGGCGCCCGGATCTAGGGTTTGAGGCGGCGGCGGGCGACGAGATCTGGTAGGCTTCTTTGGCTCGAGTGTTTCGCGTTACTCTGTAATTGATCTGGATCTGATCTCGTTGGATCTATATCACATTTGTTCTCTAATTCATCATTCTGCAATCCGTAGCTACAGATCTACTACTTGTTTACCTATATTTTGGATCGATGTATCACTTTGCGAAGTTGTGCTGAATATATTGAGTCTCTTGACGAGATTTAGTGTTAAAATTACTACCTTATATTGTTTTGAATTAATTTAGCATGAATGTATGAAGAGTATGTCGACTTATCACTGTTTAAATAGTAGAGAAGAATATATGATGGTTCAGCTGTGCATTGTCACTTTTCATTCAAAAAAAAAAAAAAAAA]
[+] EMBL OSS11752A [CAAAGCAACCACCGTACCGCAACCGCAACCGCGAGAGCCGAGAGAGAAGCCTTTTTCCCCGATCGATTCCCTTCTCTCCGCTCCGCATCGCCATGGNCTCCTCAGCACCGACGCCGCCGCCGCTCCTCCCGGTGACCAACCCGGCAGCCGCGGGGTCGTCCCCGGCCGCCACCGACGTGGGNTCTGAn ]
[+] EMBL AK060006 [ AAAGCAACCACCGTACCGCAACCGCAACCGCGAGAGCCGAGAGAGAAGCCCTTTTCCCCGATCGATTCCCTTCTCTCCGCTCCGCATCGCCATGGCCTCCTCAGCACCGACGCCGCCGCCGCTCCTCCCGGTGACCAACCCGGCAGCCGCGGGGTCGTCCCCGGCCGCCACCGCCGTGGGATCTGACGCGCCGATCGCAACCCCGGCGTTCCGGCTCTTCCTGAGCAAGCTCTCCGACTCGGCGCGGCGCTCGCTGTCCGACCGGCGGCCGTGGACGGAGCTGGTCGACCGCTCGGCGTTCTCGCGGCCGGACTCCCTCTCCGACGCCACCTCCCGCCTCCGCCGCAACCTCGCCTACTTCCGCGTCAACTACGCCGCCGTGGTGGCCTTCGCGCTCGGGGCGTCCCTCCTCGCGCACCCCTTCTCGCTCCTCGTCCTCCTCGGCCTCCTCGCCGCCTGGTGCTTCCTCTACCTCTTCCGCGGCTCCGACCAGCCCGTCGTCCTCTTCGGTCGCACCTTCTCCGACCGCGAGACGCTGCTCGGCCTCGTCGTCGCGTCGTTCGTGGCCTTCTTCTTCACCTCCGTCGCGTCGCTCATCATCTCCGGGCTGCTCGTCGGCGGGGCCATCGTCGCCGTCCACGGCGCGTGCCGCATGCCCGAGGACCTCTTCCTCGACGACGCTGACGCCGCCAGCGGCAACAGCGCGGCCCAGGGTCTCCTGTCCTTCCTCGGGGCGCCCGGATCTAGGGTTTGAGGCGGCGGCGGGCGACGAGATCTGGTAGGCTTCTTTGGCTCGAGTGTTTCGCGTTACTCTGTAATTGATCTGGATCTGATCTCGTTGGATCTATATCACATTTGTTCTCTAATTCATCATTCTGCAATCCGTAGCTACAGATCTACTACTTGTTTACCTATATTTTGGATCGATGTATCACTTTGCGAAGTTGTGCTGAATATATTGAGTCTCTTGACGAGATTTAGTGTTAAAATTACTACCTTATATTGTTTTGAATTAATTTAGCATGAATGTATGAAGAGTATGTCGACTTATCACTGTTTAAATAGTAGAGAAGAATAT ]
[+] EMBL AK104118 [ CACCGTACCGCAACCGCAACCGCGAGAGCCGAGAGAGAAGCCTTTTTCCCCGATCGATTCCCTTCTCTCCGCTCCGCATCGCCATGGCCTCCTCAGCACCGACGCCGCCGCCGCTCCTCCCGGTGACCAACCCGGCAGCCGCGGGGTCGTCCCCGGCCGCCACCGCCGTGGGATCTGACGCGCCGATCGCAACCCCGGCGTTCCGGCTCTTCCTGAGCAAGCTCTCCGACTCGGCGCGGCGCTCGCTGTCCGACCGGCGGCCGTGGACGGAGCTGGTCGACCGCTCGGCGTTCTCGCGGCCGGACTCCCTCTCCGACGCCACCTCCCGCCTCCGCCGCAACCTCGCCTACTTCCGCGTCAACTACGCCGCCGTGGTGGCCTTCGCGCTCGGGGCGTCCCTCCTCGCGCACCCCTTCTCGCTCCTCGTCCTCCTCGGCCTCCTCGCCGCCTGGTGCTTCCTCTACCTCTTCCGCGGCTCCGACCAGCCCGTCGTCCTCTTCGGTCGCACCTTCTCCGACCGCGAGACGCTGCTCGGCCTCGTCGTCGCGTCGTTCGTGGCCTTCTTCTTCACCTCCGTCGCGTCGCTCATCATCTCCGGGCTGCTCGTCGGCGGGGCCATCGTCGCCGTCCACGGCGCGTGCCGCATGCCCGAGGACCTCTTCCTCGACGACGCTGACGCCGCCAGCGGCAACAGCGCGGCCCAGGGTCTCCTGTCCTTCCTCGGGGCGCCCGGATCTAGGGTTTGAGGCGGCGGCGGGCGACGAGATCTGGTAGGCTTCTTTGGCTCGAGTGTTTCGCGTTACTCTGTAATTGATCTGGATCTGATCTCGTTGGATCTATATCACATTTGTTCTCTAATTCATCATTCTGCAATCCGTAGCTACAGATCTACTACTTGTTTACCTATATTTTGGATCGATGTATCACTTTGCGAAGTTGTGCTGAATATATTGAGTCTCTTGACGAG ]
[+] EMBL AK106175 [ ACCGTACCGCAACCGCAACCGCGAGAGCCGAGAGAGAAGCCTTTTTCCCCGATCGATTCCCTTCTCTCCGCTCCGCATCGCCATGGCCTCCTCAGCACCGACGCCGCCGCCGCTCCTCCCGGTGACCAACCCGGCAGCCGCGGGGTCGTCCCCGGCCGCCACCGCCGTGGGATCTGACGCGCCGATCGCAACCCCGGCGTTCCGGCTCTTCCTGAGCAAGCTCTCCGACTCGGCGCGGCGCTCGCTGTCCGACCGGCGGCCGTGGACGGAGCTGGTCGACCGCTCGGCGTTCTCGCGGCCGGACTCCCTCTCCGACGCCACCTCCCGCTTCCGCCGCAACCTCGCCTACTTCCGCGTCAACTACGCCGCCGTGGTGGCCTTCGCGCTCGGGGCGTCCCTCCTCGCGCACCCCTTCTCGCTCCTCGTCCTCCTCGGCCTCCTCGCCGCCTGGTGCTTCCTCTACCTCTTCCGCGGCTCCGACCAGCCCGTCGTCCTCTTCGGTCGCACCTTCTCCGACCGCGAGACGCTGCTCGGCCTCGTCGTCGCGTCGTTCGTGGCCTTCTTCTTCACCTCCGTCGCGTCGCTCATCATCTCCGGGCTGCTCGTCGGCGGGGCCATCGTCGCCGTCCACGGCGCGTGCCGCATGCCCGAGGACCTCTTCCTCGACGACGCTGACGCCGCCAGCGGCAACAGCGCGGCCCAGGGTCTCCTGTCCTTCCTCGGGGCGCCCGGATCTAGGGTTTGAGGCGGCGGCGGGCGACGAGATCTGGTAGGCTTCTTTGGCTCGAGTGTTTCGCGTTACTCTGTAATTGATCTGGATCTGATCTCGTTGGATCTATATCACATTTGTTCTCTAATTCATCATTCTGCAATCCGTAGCTACAGATCTACTACTTGTTTACCTATATTTTGGATCGATGTATCACTTTGCGAAGTTGTGCTGAATATATTGAGTCTCTTGACGAG ]
[+] EMBL C71968 [ CCGCAACCGCGAGAGCCGAGAGAGAAGCCTTTTTCCCCGATCGATTCCCTTCTCTCCGNTCCGCATCGCCATGGCCTCCTCAGCACCGACGCCGCCGCCGCTCCTCCCGGTGACCAACCCGGCAGCCGCGGGGTGGTCCCCGGCCGNCACCGCCGTGGGATCTNACGCGCCGATCGNAACCCCGGCGTTCCGGCTCTTCCTGAGCAAGCTCTCCGACTCGGNGCGGCGNTCGC ]
[+] EMBL AU161418 [ GGTGGCCTTCGCGCTCGGGGCGTCCCTCCTCGCGCACCCCTTCTCGCTCCTCGTCCTCCTCGGCCTCCTCGCCGCCTGGTGCTTCCTCTACCTCTTCCGCGGCTCCGACCAGCCCGTCGTCCTCTTCGGTCGCACCTTCTCCGACCGCGAGACGCTGCTCGGCCTCGTCGTCGCGTCGTTCGTGGCCTTCTTCTTCACCTCCGTCGCGTCGCTCATCATCTCCGGGCTGCTCGTCGGCGGGGCCATCGTCGCCGTCCACGGCGCGTGCCGCATGCCCGAGGACCTCTTCCTCGACGACGCTGACGCCGCCAGCGGCAACAGCGCGGCCCAGGGTCTCCTGTCCTTCCTCGGGGCGCCCGGATCTAGGGTTTGAGGCGGCGGC GGCGACGAGATCTGGTAGGCTTCTTTGGCTCGAGTGTTTCGCGTTACTCTGTAATTGATCTGGATCTGATCTCGTTGGATCTATAT ACATTTGGTCTCTAATTCATCATTCTGCAATCCG ]
[+] EMBL AU101068 [ TCTGTNATTGATCTGGATCTGATCTCGTTGGATCTATATCACATTTGNTCTCTAATTCATCATTCTGCAATCCGTAGCTACAGATCTACTACTTGTTTACCTATATTTTGGATCGATGTATCACTTTGCGAAGTTGTGCTGAATATATTGAGTCTCTTGACGAGATTTAGTGTTAAAATTACTNCCTTATATTGTTTTGAATTAATTTAGCATGAATGTATGAAGAGTATGTCGACTTATCACTGTTTAAATAGTAGAGAAGAATATATGATGGTTCAGCTGTGCATTGTCACTTTTCATTCAAAAAAAAAAAAAAAAA]
consensusID : consensus_14075#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 773 fasta sequence
[CCATCTCCAAGCCGGACTAGCTCTCCGAGGCCACCTCGCGGCTGCGCCGCAACCTCGCCTACTTCCGCGTCAACTACGCCGCCGTGGTGGCGTTCTCCCTCGCGGCCTCGCTGCTGGCGCACCCCTTCTCCCTCCTCGTCCTCCTCGCCATCCTCGGCGGCTGGTGCTTCCTCTACGTCTTCCGAGCCGCCGACCAGCCCGTCGTTCTCTTCGGCCGCACCTTCACCGACCGCGAGACGCTGCTCGGCCTCGTCGTCGCGTCCGTGCTGGCCTTCTTCATGACCTCCGTGGCGTCGCTCATCATCTCCGGGCTGCTCGTCGGCGGCGCGATCGTTGCCGTGCACGGCGCATTCCGCGTGCCTGAGGACCTCTTCCTTGACGACCCGAGCGTTGGCTCCAATGGCAACACTACCAGCAGGCTGCTCTCCTTCCTCGGGGCGCCCGGATCTGGGGTTTGATGCGGCGCAGGATCTGGTAGGATTCTTGGGCTCGTGGAATTTATTTTGAGTACGAATTGGCATGGATCTGGTTCGTCGGCTGTAGCTAATTGGTTGCCGCTCTGCTTGTGCTTAATTGTGAGTAGTTATGAATATGCAGATCATATTTTGCCTTCTAATATGTGGTTCGAATTATGCAAAGATCTGCTAGATTTGTACTTCACTTGTTAGTTTGAATCTGAGTGGTGACTGGTAAGAATTGTTAGATGTCAGCAACTCAGTATGTCTTGTGCTCTGTTCTTTCAAGTAACTGTACACCGACTCCTTAGCAAGTTT]
[+] EMBL AK108526 [CCATCTCCAAGCCGGACTAGCTCTCCGAGGCCACCTCGCGGCTGCGCCGCAACCTCGCCTACTTCCGCGTCAACTACGCCGCCGTGGTGGCGTTCTCCCTCGCGGCCTCGCTGCTGGCGCACCCCTTCTCCCTCCTCGTCCTCCTCGCCATCCTCGGCGGCTGGTGCTTCCTCTACGTCTTCCGAGCCGCCGACCAGCCCGTCGTTCTCTTCGGCCGCACCTTCACCGACCGCGAGACGCTGCTCGGCCTCGTCGTCGCGTCCGTGCTGGCCTTCTTCATGACCTCCGTGGCGTCGCTCATCATCTCCGGGCTGCTCGTCGGCGGCGCGATCGTTGCCGTGCACGGCGCATTCCGCGTGCCTGAGGACCTCTTCCTTGACGACCCGAGCGTTGGCTCCAATGGCAACACTACCAGCAGGCTGCTCTCCTTCCTCGGGGCGCCCGGATCTGGGGTTTGATGCGGCGCAGGATCTGGTAGGATTCTTGGGCTCGTGGAATTTATTTTGAGTACGAATTGGCATGGATCTGGTTCGTCGGCTGTAGCTAATTGGTTGCCGCTCTGCTTGTGCTTAATTGTGAGTAGTTATGAATATGCAGATCATATTTTGCCTTCTAATATGTGGTTCGAATTATGCAAAGATCTGCTAGATTTGTACTTCACTTGTTAGTTTGAATCTGAGTGGTGACTGGTAAGAATTGTTAGATGTCAGCAACTCAGTATGTCTTGTGCTCTGTTCTTTCAAGTAACTGTACACCGACTCCTTAGCAAGTTT]
consensusID : consensus_14075#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 692 fasta sequence
[GTCGACCCAAGGGGTCCGCCCAAGGNGTCCGGCCCAAGGNGTCCGGCGCCGCCGTGGTGCCTTCGCGCTCGGGGCGTCCCTCCTCGGGCACCCCTTCTCGCTCCTNGTCCTCCTCGGCCTCCTCGCCGCTGGTGCTTCCTCTACCTCTTCCGCGGCTCCGACCAGCCCGTCGTCCTCTTCGGTCGCACCTTCTCCGACCGCGAGACGCTGCTCGGCCTCGTCGTCGCGTCGTTCGTGGCCTTCTTCTTCACCTCCGTCGCGTCGCTCATCATCTCCGGGCTGCTCGTCGGCGGGGCCATCGTCGCCGTCCACGGCGCGTGCCGCATGCCCGAGGACCTCTTCCTCGACGACGCTGACGCCGCCAGCGGCAACAGCGCGGCCCAGGGTCTCCTGTCCTTCCTCGGGGCGCCCGGATCTAGGGTTTGAGGCGGCGGCGGGCGACGAGATCTGGTAGGCTTCTTTGGCTCGAGTGTTTCGCGTTACTCTGTAATTGATCTGGATCTGATCTCGTTGGATCTATATCACATTTGTTCTCTAATTCATCATTCTGCAATCCGTAGCTACAGATCTACTACTTGTTTACCTATATTTTGGATCGATGTATCACTTTGCGAAGTTGTGCTGAATATATTGAGTCTCTTGACGAGATTTAGTGTTAAAATTACTACCTTATATTGTTTTGAATTAAAAAA]
[+] EMBL AU161419 [GTCGACCCAAGGGGTCCGCCCAAGGNGTCCGGCCCAAGGNGTCCGGCGCCGCCGTGGTGCCTTCGCGCTCGGGGCGTCCCTCCTCGGGCACCCCTTCTCGCTCCTNGTCCTCCTCGGCCTCCTCGCCGCTGGTGCTTCCTCTACCTCTTCCGCGGCTCCGACCAGCCCGTCGTCCTCTTCGGTCGCACCTTCTCCGACCGCGAGACGCTGCTCGGCCTCGTCGTCGCGTCGTTCGTGGCCTTCTTCTTCACCTCCGTCGCGTCGCTCATCATCTCCGGGCTGCTCGTCGGCGGGGCCATCGTCGCCGTCCACGGCGCGTGCCGCATGCCCGAGGACCTCTTCCTCGACGACGCTGACGCCGCCAGCGGCAACAGCGCGGCCCAGGGTCTCCTGTCCTTCCTCGGGGCGCCCGGATCTAGGGTTTGAGGCGGCGGCGGGCGACGAGATCTGGTAGGCTTCTTTGGCTCGAGTGTTTCGCGTTACTCTGTAATTGATCTGGATCTGATCTCGTTGGATCTATATCACATTTGTTCTCTAATTCATCATTCTGCAATCCGTAGCTACAGATCTACTACTTGTTTACCTATATTTTGGATCGATGTATCACTTTGCGAAGTTGTGCTGAATATATTGAGTCTCTTGACGAGATTTAGTGTTAAAATTACTACCTTATATTGTTTTGAATTAAAAAA]
[+] EMBL BI805210 [ GACCAGCCCGTCGTCCTCTTCGGTCGCACCTTCTCCGACCGCGAGACGCTGCTCGGCCTCGTCGTCGCGTCGTTCGTGGCCTTCTTCTTCACCTCCGTCGCGTCGCTCATCATCTCCGGGCTGCTCGTCGGCGGGGCCATCGTCGCCGTCC CGGCGCGTGCCGCATGCCCGAGGACCTCTTCCTCGACCACGCTGACGCCGCCAGCGGCTACAGCGCGGCCCAGGGTCTCCTGTCCTTCCTCGGGGCGCCCGGATCTAGGGTTTGAGGCGGCGGCGGGCGACGAGATCTGGTAGGCTTCTTTGGCTCGAGTGTTTCGCGTTACTCTGTAATTGATCTGGATCTGATCTCGTTGGATCTATATCACATTTGTTCTCTAATTCATCATTCTGCAATCCGTAGCTACAGATCTACTACTTGTTTACCTATATTTTGGATCGATGTATCACTTTGCGAAGTTGTGCTGAATATATTGAGTCTCTTGACGAGATTTAGTGTTAAAATTACTACCTTATATTGTTTTGAAT ]
[+] EMBL AK060555 [ GTGTTTCGCGTTACTCTGTAATTGATCTGGATCTGATCTCGTTGGATCTATATCACATTTGTTCTCTAATTCATCATTCTGCAATCCGTAGCTACAGATCTACTACTTGTTTACCTATATTTTGGATCGATGTATCACTTTGCGAAGTTGTGCTGAATATATTGAGTCTCTTGACGAG ]
consensusID : consensus_14075#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 567 fasta sequence
[NTTCTCGCTCCTCGTCCTCCTCGGCNTCTTCGCCGCCCTGGTGCTTCCTCTACCTCTTCCGCGGNTCCGACCAGCCCGTCGTCCTCTTCGGTCGCACCTTCTCCGACCGCGAGACGCTGCTCGGCCTCGTCGTCGCGTCGTTCGTGGCCTTCTTCTTCACCTCCGTCGCGTCGCTCATCATCTCCGGGCTGCTCGTCGGCGGGGCCATCGTCGCCGTCCACGGCCGTGCCGCATGCCCGAGGACCTCTTCCTCGACGACCTGACGCCGCCAGCGGCAACAGCGCGGCCCAGGGTCTCCTGTCCTTCCTCGGGGCGCCCGGATCTAGGGTTTGAGGCGGCGGCGGGCGACGAGATCTGGTAGGCTTCTTTGGCTCGAGTGTTTCGCGTTACTCTGTAATTGATCTGGATCTGATCTCGTTGGATCTATATCACATTTGTTCTCTAATTCATCATTCTGCAATCCGTAGCTACAGATCTACTACTTGTTTACCTATATTTTGGATCGATGTATCACTTTGCGAAGTTGTGCTGAATATATTGAGTCTCTTGAAAAAAAAAAAAAAAAAA]
[+] EMBL AU095954 [NTTCTCGCTCCTCGTCCTCCTCGGCNTCTTCGCCGCCCTGGTGCTTCCTCTACCTCTTCCGCGGNTCCGACCAGCCCGTCGTCCTCTTCGGTCGCACCTTCTCCGACCGCGAGACGCTGCTCGGCCTCGTCGTCGCGTCGTTCGTGGCCTTCTTCTTCACCTCCGTCGCGTCGCTCATCATCTCCGGGCTGCTCGTCGGCGGGGCCATCGTCGCCGTCCACGGCCGTGCCGCATGCCCGAGGACCTCTTCCTCGACGACCTGACGCCGCCAGCGGCAACAGCGCGGCCCAGGGTCTCCTGTCCTTCCTCGGGGCGCCCGGATCTAGGGTTTGAGGCGGCGGCGGGCGACGAGATCTGGTAGGCTTCTTTGGCTCGAGTGTTTCGCGTTACTCTGTAATTGATCTGGATCTGATCTCGTTGGATCTATATCACATTTGTTCTCTAATTCATCATTCTGCAATCCGTAGCTACAGATCTACTACTTGTTTACCTATATTTTGGATCGATGTATCACTTTGCGAAGTTGTGCTGAATATATTGAGTCTCTTGAAAAAAAAAAAAAAAAAA]
consensusID : consensus_14075#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 474 fasta sequence
[CGAGCTCGTGCCGAATTCGGCACGAGCTTTTTCCCCGATCGATTCCCTTCTCTCCGCTCCGCATCGCCATGGCCTCCTCAGCACCGACGCCGCCGCCGCTCCTCCCGGTGACCAACCCGGCAACGCGGGGTCGTCCCCGGCCGCCACCGCCGTGGGATCTGACGCGCCGATCGCAACCCCGGCGTTCCGGNTCTTCCTGANCAAGCTCTCCGANTCGGCGCGGNGCTCGCTGTCCGANCGGGGGGCGTGGAAAGAACTTGTCGANCGCTCCGGTTTCTTCCNGNCGGAATCCCTCTCCGAAACCACCNNCCGCCTCCGCCGGAAATCGGCTAATTCCGNGTCACTNNCCCCCCNTGGTTGGCTTCCCGCTCCGGGGGTNCCTTCTCCCGCAACCTTCTTGNTCCTTGTTCTNCTCGGGCCCNGGACGCCTGGTNGTTCCTNTTANTTTTTCCGNGGGTCCCAANAAATCGTTTT]
[+] EMBL AA753093 [CGAGCTCGTGCCGAATTCGGCACGAGCTTTTTCCCCGATCGATTCCCTTCTCTCCGCTCCGCATCGCCATGGCCTCCTCAGCACCGACGCCGCCGCCGCTCCTCCCGGTGACCAACCCGGCAACGCGGGGTCGTCCCCGGCCGCCACCGCCGTGGGATCTGACGCGCCGATCGCAACCCCGGCGTTCCGGNTCTTCCTGANCAAGCTCTCCGANTCGGCGCGGNGCTCGCTGTCCGANCGGGGGGCGTGGAAAGAACTTGTCGANCGCTCCGGTTTCTTCCNGNCGGAATCCCTCTCCGAAACCACCNNCCGCCTCCGCCGGAAATCGGCTAATTCCGNGTCACTNNCCCCCCNTGGTTGGCTTCCCGCTCCGGGGGTNCCTTCTCCCGCAACCTTCTTGNTCCTTGTTCTNCTCGGGCCCNGGACGCCTGGTNGTTCCTNTTANTTTTTCCGNGGGTCCCAANAAATCGTTTT]
consensusID : consensus_14075#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 278 fasta sequence
[GCCGCTGCCGATCGCACCCCGGCGTTCCGGCTCTTCCTGAGCAAGCTCTCCGACTCGGCGCGGCGCTCGCTGTCCGACCGGCGGCCGTGGACGGAGCTGGTCGACCGCTCGGCGTTCTCGCGGCCGGACTCCCTCTCCGACGCCACCTCCCGCCTCCGCCGCAACCTCGCCTACTTCCGCGTCAACTACGCCGCCGTGGTGGCCTTCGCGCTCGGGGCGTCCCTCCTCGCGCAGCGGCCGCTAGCGGCCGCGAATTCGCGGCCGCTAGCGGCCGCGAA]
[+] EMBL AU225689 [GCCGCTGCCGATCGCACCCCGGCGTTCCGGCTCTTCCTGAGCAAGCTCTCCGACTCGGCGCGGCGCTCGCTGTCCGACCGGCGGCCGTGGACGGAGCTGGTCGACCGCTCGGCGTTCTCGCGGCCGGACTCCCTCTCCGACGCCACCTCCCGCCTCCGCCGCAACCTCGCCTACTTCCGCGTCAACTACGCCGCCGTGGTGGCCTTCGCGCTCGGGGCGTCCCTCCTCGCGCAGCGGCCGCTAGCGGCCGCGAATTCGCGGCCGCTAGCGGCCGCGAA]
consensusID : consensus_14075#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 230 fasta sequence
[CGGCTGTTCTGGGTCTGCCCCGGGCTGCACCGGCTGTCGTGATCTTGACGGGGCGATCGGAGCCCCGGCTGTTCCGGTTCTTTCCTTGAGCAAGCTCTTCCGACTCGTCGCGGCGCTCGCTGGTCCGACCGGCGGCCGTGGACGAGCTGGTCGACCGCTCGCGTTTTGCGGCCGGACTTCCTTTCGACGCACCTCCGGCTTCGATCGGAACCTGGCCTTGTTCGGGCTAA]
[+] EMBL OS38013 [CGGCTGTTCTGGGTCTGCCCCGGGCTGCACCGGCTGTCGTGATCTTGACGGGGCGATCGGAGCCCCGGCTGTTCCGGTTCTTTCCTTGAGCAAGCTCTTCCGACTCGTCGCGGCGCTCGCTGGTCCGACCGGCGGCCGTGGACGAGCTGGTCGACCGCTCGCGTTTTGCGGCCGGACTTCCTTTCGACGCACCTCCGGCTTCGATCGGAACCTGGCCTTGTTCGGGCTAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14075#4 ------------------------------------------------------------
consensus_14075#6 ------------------------------------------------------------
consensus_14075#5 ------------------------------------------------------------
consensus_14075#0 ----------------------------------------------------CAAAGCAA 8
consensus_14075#2 ----------------------------GTCGACCCAAGGGGTCCGCCCAAGGNGTCCGG 32
consensus_14075#3 ------------------------------------------------------------
consensus_14075#1 CCATCTCCAAGCCGGACTAGCTCTCCGAGGCCACCTCGCGGCTGCGCCGCAACCTCGCCT 60
consensus_14075#4 ----------------CGAGCTCGTGCCGAATTCGGCACGAGCTTTTTCCCCGATCGATT 44
consensus_14075#6 ------------------------------------------------------------
consensus_14075#5 ------------------------------------------------------------
consensus_14075#0 CCACCGTACCGCAACCGCAACCGCGAGAGCCGAGAGAGAAGCCTTTTTCCCCGATCGATT 68
consensus_14075#2 CCCAAGGNGTC--CGGCGCCGCCGTGGTGCC-TTCGCGCTCGGGGCGTCCCTCCTCGGGC 89
consensus_14075#3 ------------------------------------------------------------
consensus_14075#1 ACTTCCGCGTCAACTACGCCGCCGTGGTGGCGTTCTCCCTCGCGGCCTCGCTGCTGGCGC 120
consensus_14075#4 CCCTTCTCTCCGCTCCGCATCGCCATGGCCTCCTCAGCACCGACGCCGCCGCCGCTCCTC 104
consensus_14075#6 ------------------------------------------------------------
consensus_14075#5 ------------------------------------------------------------
consensus_14075#0 CCCTTCTCTCCGCTCCGCATCGCCATGGCCTCCTCAGCACCGACGCCGCCGCCGCTCCTC 128
consensus_14075#2 ACCCCTTCTCGCTCCTNGTCCTCCTCGGCCTCCTCGCCGC---TGGTGCTTCCTCTACCT 146
consensus_14075#3 ----NTTCTCGCTCCTCGTCCTCCTCGGCNTCTTCGCCGCCC-TGGTGCTTCCTCTACCT 55
consensus_14075#1 ACCCCTTCTCCCTCCTCGTCCTCCTCGCCATCCTCGGCGGC--TGGTGCTTCCTCTACGT 178
consensus_14075#4 CCGGTGACCAACCCGGCAACGCGGGGTC-GTCCCCGGCCGCCACCGCCGT-GGGATCT-G 161
consensus_14075#6 -------------CGGCTGTTCTGGGTCTGCCCCGGGCTGCACCGGCTGTCGTGATCTTG 47
consensus_14075#5 -----------------------------------------------------------G 1
consensus_14075#0 CCGGTGACCAACCCGGCAGCCGCGGGGTCGTCCCCGGCCGCCACCGCCGT-GGGATCT-G 186
consensus_14075#2 CTTCCGCGGCTCCGACCAGCCCGTCGTC-CTCTTCGGTCGCACCTTCTCC---GACCGCG 202
consensus_14075#3 CTTCCGCGGNTCCGACCAGCCCGTCGTC-CTCTTCGGTCGCACCTTCTCC---GACCGCG 111
consensus_14075#1 CTTCCGAGCCGCCGACCAGCCCGTCGTT-CTCTTCGGCCGCACCTTCACC---GACCGCG 234
*
consensus_14075#4 ACGC-GCCGATCGCAACCCCGGC-GTTCCGGNTCTTCC--TGANCAAGCTCT-CCGANTC 216
consensus_14075#6 ACGG-GGCGATCGGAGCCCCGGCTGTTCCGGTTCTTTCCTTGAGCAAGCTCTTCCGACTC 106
consensus_14075#5 CCGCTGCCGATCGCA-CCCCGGC-GTTCCGGCTCTTCC--TGAGCAAGCTCT-CCGACTC 56
consensus_14075#0 ACGC-GCCGATCGCAACCCCGGC-GTTCCGGCTCTTCC--TGAGCAAGCTCT-CCGACTC 241
consensus_14075#2 AGAC-GCTGCTCGGCCTCGTCGTCGCGTCGTTCGTGGCCTTCTTCTTCACCT-CCGTCGC 260
consensus_14075#3 AGAC-GCTGCTCGGCCTCGTCGTCGCGTCGTTCGTGGCCTTCTTCTTCACCT-CCGTCGC 169
consensus_14075#1 AGAC-GCTGCTCGGCCTCGTCGTCGCGTCCGTGCTGGCCTTCTTCATGACCT-CCGTGGC 292
* * *** * * * * * * * * ** *** *
consensus_14075#4 GGCGCGGNGC-TCGCTG-TCCGANCGGGGGGCGTG-GAAAGAACTTGTCGANCGCTCCGG 273
consensus_14075#6 GTCGCGGCGC-TCGCTGGTCCGACCGGCGGCCGTG-GAC-GAGCTGGTCGACCGCTCGCG 163
consensus_14075#5 GGCGCGGCGC-TCGCTG-TCCGACCGGCGGCCGTG-GACGGAGCTGGTCGACCGCTCGGC 113
consensus_14075#0 GGCGCGGCGC-TCGCTG-TCCGACCGGCGGCCGTG-GACGGAGCTGGTCGACCGCTCGGC 298
consensus_14075#2 GTCGCTCATCATCTCCGGGCTGCTCGTCGGCGGGGCCATCGTCGCCGTCCACGGCGCGTG 320
consensus_14075#3 GTCGCTCATCATCTCCGGGCTGCTCGTCGGCGGGGCCATCGTCGCCGTCCACGGC-CGTG 228
consensus_14075#1 GTCGCTCATCATCTCCGGGCTGCTCGTCGGCGGCGCGATCGTTGCCGTGCACGGCGCATT 352
* *** * ** * * * * ** ** * * * * ** * ** *
consensus_14075#4 TTTCTTCCNGNCGGAATCCCTCTCCGAAACC---ACCNNCCGCCTCCGCCGGAAATCGGC 330
consensus_14075#6 TTT--TGCGGCCGGACTTCCTTTC--GACGC---ACCTCCGGCTTCGATCGGAACCTGGC 216
consensus_14075#5 GTTCTCGCGGCCGGACTCCCTCTCCGACGCC---ACCTCCCGCCTCCGCCGCAACCTCGC 170
consensus_14075#0 GTTCTCGCGGCCGGACTCCCTCTCCGACGCC---ACCTCCCGCCTCCGCCGCAACCTCGC 355
consensus_14075#2 CCGCATGCCCGAGGACCTCTTCCTCGACGACGCTGACGCCGCCAGCGGCAACAGCGCGGC 380
consensus_14075#3 CCGCATGCCCGAGGACCTCTTCCTCGACGAC-CTGACGCCGCCAGCGGCAACAGCGCGGC 287
consensus_14075#1 CCGCGTGCCTGAGGACCTCTTCCTTGACGACCCGAGCGTTGGCTCCAATGGCAACACTAC 412
* *** * * * * * * * *
consensus_14075#4 TAA-TTCCGNGTCACTNNCCCC-CCNTGGTTGGCTTCCCGCTCCGGGGGTNCCTTC--TC 386
consensus_14075#6 CTT-GTTCGGGCTAA--------------------------------------------- 230
consensus_14075#5 CTACTTCCGCGTCAACTACGCCGCCGTGGTGGCCTTCGCGCTCGGGGCGTCCCTCC--TC 228
consensus_14075#0 CTACTTCCGCGTCAACTACGCCGCCGTGGTGGCCTTCGCGCTCGGGGCGTCCCTCC--TC 413
consensus_14075#2 CCAGGGTCTCCTGTCCTTCCTCGGGGCGCCCGGATCTAGGGTTTGAGGCGGCGGCGGGCG 440
consensus_14075#3 CCAGGGTCTCCTGTCCTTCCTCGGGGCGCCCGGATCTAGGGTTTGAGGCGGCGGCGGGCG 347
consensus_14075#1 CAGCAGGCTGCTCTCCTTCCTCGGGGCGCCCGGATCTGGGGTTTGATGCGGCG------- 465
*
consensus_14075#4 CCGCAACC-TTCTTGNTCCTTGTTCTNCTCGGGCCCNGGACGCCTGGTNGTTCCTNTTAN 445
consensus_14075#6 ------------------------------------------------------------
consensus_14075#5 GCGCAGC-------GGCCGCTAGCGGCCGCGAATTCGCGGCCGCTAGCGGCCGCGAA--- 278
consensus_14075#0 GCGCACCCCTTCTCGCTCCTCGTCCTCCTCGGCCTCCTCGCCGCCTGGTGCTTCCTCTAC 473
consensus_14075#2 ACGAGATCTGGTAGGCTTCTTTGGCTCGAGTGTTTCGCGTTACTCTGTAATTGATCTGGA 500
consensus_14075#3 ACGAGATCTGGTAGGCTTCTTTGGCTCGAGTGTTTCGCGTTACTCTGTAATTGATCTGGA 407
consensus_14075#1 -CAGGATCTGGTAGGATTCTTGGGCTCGTGGAATTTATTTTGAGTACGAATTGGCATGGA 524
consensus_14075#4 TTTTTCCGNGGGTCCCAANAAATCGTTTT------------------------------- 474
consensus_14075#6 ------------------------------------------------------------
consensus_14075#5 ------------------------------------------------------------
consensus_14075#0 CTCTTCCGCGGCTCCGACCAGCCCGTCGTCCTCTTCGGTCGCACCTTCTCCGACCGCGAG 533
consensus_14075#2 TCTGATCTCGTTGGATCTATATCACATTTGTTCTCTAATTCATCATTCTGCAATCCG--T 558
consensus_14075#3 TCTGATCTCGTTGGATCTATATCACATTTGTTCTCTAATTCATCATTCTGCAATCCG--T 465
consensus_14075#1 TCTGGT-TCGTCGG--CTGTAGCTAATTGGTTGCCGCTCTGCTTGTGCTTAATTGTGAGT 581
consensus_14075#4 ------------------------------------------------------------
consensus_14075#6 ------------------------------------------------------------
consensus_14075#5 ------------------------------------------------------------
consensus_14075#0 ACGCTGCTCGGCCTCGTCGTCGCGTCGTTCGTGGCCTTCTTCTTCACCTCCGTCGCGTCG 593
consensus_14075#2 AGCTACAGATCTACTACTTGTTTACCTATATTTTGGATCGATGTATCACTT-TGCGAAGT 617
consensus_14075#3 AGCTACAGATCTACTACTTGTTTACCTATATTTTGGATCGATGTATCACTT-TGCGAAGT 524
consensus_14075#1 AGTTATGAATATGCAGATCATAT-TTTGCCTTCTAATATGTGGTTCGAATTATGCAAAGA 640
consensus_14075#4 ------------------------------------------------------------
consensus_14075#6 ------------------------------------------------------------
consensus_14075#5 ------------------------------------------------------------
consensus_14075#0 CTCATCATCTCCGGGCTGCTCGTCGGCGGGGCCATCGTCGCCGTCCACGGCGCGTGCCGC 653
consensus_14075#2 TGTGCTGAATATATTGAGTCTCTTGACGAGATTTAGTGTTAAAATTACTACCTTATATTG 677
consensus_14075#3 TGTGCTGAATATATTGAGTCTCTTGAAAAAAAAAAAAAAAAAA----------------- 567
consensus_14075#1 TCTGCTAGATTTGT-ACTTCACTTGTTAGTTTGAATCTGAGTGGTGACTGGTAAGAATTG 699
consensus_14075#4 ------------------------------------------------------------
consensus_14075#6 ------------------------------------------------------------
consensus_14075#5 ------------------------------------------------------------
consensus_14075#0 ATGCCCGAGGACCTCTTCCTCGACGACGCTGACGCCGCCAGCGGCAACAGCGCGGCCCAG 713
consensus_14075#2 TTTTGAATTAAAAAA--------------------------------------------- 692
consensus_14075#3 ------------------------------------------------------------
consensus_14075#1 TTAGATGTCAGCAACTCAGTATGTCTTGTGCTCTGTTCTTTCAAGTAACTGTACACCGAC 759
consensus_14075#4 ------------------------------------------------------------
consensus_14075#6 ------------------------------------------------------------
consensus_14075#5 ------------------------------------------------------------
consensus_14075#0 GGTCTCCTGTCCTTCCTCGGGGCGCCCGGATCTAGGGTTTGAGGCGGCGGCGGGCGACGA 773
consensus_14075#2 ------------------------------------------------------------
consensus_14075#3 ------------------------------------------------------------
consensus_14075#1 TCCTTAGCAAGTTT---------------------------------------------- 773
consensus_14075#4 ------------------------------------------------------------
consensus_14075#6 ------------------------------------------------------------
consensus_14075#5 ------------------------------------------------------------
consensus_14075#0 GATCTGGTAGGCTTCTTTGGCTCGAGTGTTTCGCGTTACTCTGTAATTGATCTGGATCTG 833
consensus_14075#2 ------------------------------------------------------------
consensus_14075#3 ------------------------------------------------------------
consensus_14075#1 ------------------------------------------------------------
consensus_14075#4 ------------------------------------------------------------
consensus_14075#6 ------------------------------------------------------------
consensus_14075#5 ------------------------------------------------------------
consensus_14075#0 ATCTCGTTGGATCTATATCACATTTGTTCTCTAATTCATCATTCTGCAATCCGTAGCTAC 893
consensus_14075#2 ------------------------------------------------------------
consensus_14075#3 ------------------------------------------------------------
consensus_14075#1 ------------------------------------------------------------
consensus_14075#4 ------------------------------------------------------------
consensus_14075#6 ------------------------------------------------------------
consensus_14075#5 ------------------------------------------------------------
consensus_14075#0 AGATCTACTACTTGTTTACCTATATTTTGGATCGATGTATCACTTTGCGAAGTTGTGCTG 953
consensus_14075#2 ------------------------------------------------------------
consensus_14075#3 ------------------------------------------------------------
consensus_14075#1 ------------------------------------------------------------
consensus_14075#4 ------------------------------------------------------------
consensus_14075#6 ------------------------------------------------------------
consensus_14075#5 ------------------------------------------------------------
consensus_14075#0 AATATATTGAGTCTCTTGACGAGATTTAGTGTTAAAATTACTACCTTATATTGTTTTGAA 1013
consensus_14075#2 ------------------------------------------------------------
consensus_14075#3 ------------------------------------------------------------
consensus_14075#1 ------------------------------------------------------------
consensus_14075#4 ------------------------------------------------------------
consensus_14075#6 ------------------------------------------------------------
consensus_14075#5 ------------------------------------------------------------
consensus_14075#0 TTAATTTAGCATGAATGTATGAAGAGTATGTCGACTTATCACTGTTTAAATAGTAGAGAA 1073
consensus_14075#2 ------------------------------------------------------------
consensus_14075#3 ------------------------------------------------------------
consensus_14075#1 ------------------------------------------------------------
consensus_14075#4 ----------------------------------------------------------
consensus_14075#6 ----------------------------------------------------------
consensus_14075#5 ----------------------------------------------------------
consensus_14075#0 GAATATATGATGGTTCAGCTGTGCATTGTCACTTTTCATTCAAAAAAAAAAAAAAAAA 1131
consensus_14075#2 ----------------------------------------------------------
consensus_14075#3 ----------------------------------------------------------
consensus_14075#1 ----------------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||