These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14075#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1131 fasta sequence [CAAAGCAACCACCGTACCGCAACCGCAACCGCGAGAGCCGAGAGAGAAGCCTTTTTCCCCGATCGATTCCCTTCTCTCCGCTCCGCATCGCCATGGCCTCCTCAGCACCGACGCCGCCGCCGCTCCTCCCGGTGACCAACCCGGCAGCCGCGGGGTCGTCCCCGGCCGCCACCGCCGTGGGATCTGACGCGCCGATCGCAACCCCGGCGTTCCGGCTCTTCCTGAGCAAGCTCTCCGACTCGGCGCGGCGCTCGCTGTCCGACCGGCGGCCGTGGACGGAGCTGGTCGACCGCTCGGCGTTCTCGCGGCCGGACTCCCTCTCCGACGCCACCTCCCGCCTCCGCCGCAACCTCGCCTACTTCCGCGTCAACTACGCCGCCGTGGTGGCCTTCGCGCTCGGGGCGTCCCTCCTCGCGCACCCCTTCTCGCTCCTCGTCCTCCTCGGCCTCCTCGCCGCCTGGTGCTTCCTCTACCTCTTCCGCGGCTCCGACCAGCCCGTCGTCCTCTTCGGTCGCACCTTCTCCGACCGCGAGACGCTGCTCGGCCTCGTCGTCGCGTCGTTCGTGGCCTTCTTCTTCACCTCCGTCGCGTCGCTCATCATCTCCGGGCTGCTCGTCGGCGGGGCCATCGTCGCCGTCCACGGCGCGTGCCGCATGCCCGAGGACCTCTTCCTCGACGACGCTGACGCCGCCAGCGGCAACAGCGCGGCCCAGGGTCTCCTGTCCTTCCTCGGGGCGCCCGGATCTAGGGTTTGAGGCGGCGGCGGGCGACGAGATCTGGTAGGCTTCTTTGGCTCGAGTGTTTCGCGTTACTCTGTAATTGATCTGGATCTGATCTCGTTGGATCTATATCACATTTGTTCTCTAATTCATCATTCTGCAATCCGTAGCTACAGATCTACTACTTGTTTACCTATATTTTGGATCGATGTATCACTTTGCGAAGTTGTGCTGAATATATTGAGTCTCTTGACGAGATTTAGTGTTAAAATTACTACCTTATATTGTTTTGAATTAATTTAGCATGAATGTATGAAGAGTATGTCGACTTATCACTGTTTAAATAGTAGAGAAGAATATATGATGGTTCAGCTGTGCATTGTCACTTTTCATTCAAAAAAAAAAAAAAAAA] [+] EMBL OSS11752A [CAAAGCAACCACCGTACCGCAACCGCAACCGCGAGAGCCGAGAGAGAAGCCTTTTTCCCCGATCGATTCCCTTCTCTCCGCTCCGCATCGCCATGGNCTCCTCAGCACCGACGCCGCCGCCGCTCCTCCCGGTGACCAACCCGGCAGCCGCGGGGTCGTCCCCGGCCGCCACCGACGTGGGNTCTGAn ] [+] EMBL AK060006 [ AAAGCAACCACCGTACCGCAACCGCAACCGCGAGAGCCGAGAGAGAAGCCCTTTTCCCCGATCGATTCCCTTCTCTCCGCTCCGCATCGCCATGGCCTCCTCAGCACCGACGCCGCCGCCGCTCCTCCCGGTGACCAACCCGGCAGCCGCGGGGTCGTCCCCGGCCGCCACCGCCGTGGGATCTGACGCGCCGATCGCAACCCCGGCGTTCCGGCTCTTCCTGAGCAAGCTCTCCGACTCGGCGCGGCGCTCGCTGTCCGACCGGCGGCCGTGGACGGAGCTGGTCGACCGCTCGGCGTTCTCGCGGCCGGACTCCCTCTCCGACGCCACCTCCCGCCTCCGCCGCAACCTCGCCTACTTCCGCGTCAACTACGCCGCCGTGGTGGCCTTCGCGCTCGGGGCGTCCCTCCTCGCGCACCCCTTCTCGCTCCTCGTCCTCCTCGGCCTCCTCGCCGCCTGGTGCTTCCTCTACCTCTTCCGCGGCTCCGACCAGCCCGTCGTCCTCTTCGGTCGCACCTTCTCCGACCGCGAGACGCTGCTCGGCCTCGTCGTCGCGTCGTTCGTGGCCTTCTTCTTCACCTCCGTCGCGTCGCTCATCATCTCCGGGCTGCTCGTCGGCGGGGCCATCGTCGCCGTCCACGGCGCGTGCCGCATGCCCGAGGACCTCTTCCTCGACGACGCTGACGCCGCCAGCGGCAACAGCGCGGCCCAGGGTCTCCTGTCCTTCCTCGGGGCGCCCGGATCTAGGGTTTGAGGCGGCGGCGGGCGACGAGATCTGGTAGGCTTCTTTGGCTCGAGTGTTTCGCGTTACTCTGTAATTGATCTGGATCTGATCTCGTTGGATCTATATCACATTTGTTCTCTAATTCATCATTCTGCAATCCGTAGCTACAGATCTACTACTTGTTTACCTATATTTTGGATCGATGTATCACTTTGCGAAGTTGTGCTGAATATATTGAGTCTCTTGACGAGATTTAGTGTTAAAATTACTACCTTATATTGTTTTGAATTAATTTAGCATGAATGTATGAAGAGTATGTCGACTTATCACTGTTTAAATAGTAGAGAAGAATAT ] [+] EMBL AK104118 [ CACCGTACCGCAACCGCAACCGCGAGAGCCGAGAGAGAAGCCTTTTTCCCCGATCGATTCCCTTCTCTCCGCTCCGCATCGCCATGGCCTCCTCAGCACCGACGCCGCCGCCGCTCCTCCCGGTGACCAACCCGGCAGCCGCGGGGTCGTCCCCGGCCGCCACCGCCGTGGGATCTGACGCGCCGATCGCAACCCCGGCGTTCCGGCTCTTCCTGAGCAAGCTCTCCGACTCGGCGCGGCGCTCGCTGTCCGACCGGCGGCCGTGGACGGAGCTGGTCGACCGCTCGGCGTTCTCGCGGCCGGACTCCCTCTCCGACGCCACCTCCCGCCTCCGCCGCAACCTCGCCTACTTCCGCGTCAACTACGCCGCCGTGGTGGCCTTCGCGCTCGGGGCGTCCCTCCTCGCGCACCCCTTCTCGCTCCTCGTCCTCCTCGGCCTCCTCGCCGCCTGGTGCTTCCTCTACCTCTTCCGCGGCTCCGACCAGCCCGTCGTCCTCTTCGGTCGCACCTTCTCCGACCGCGAGACGCTGCTCGGCCTCGTCGTCGCGTCGTTCGTGGCCTTCTTCTTCACCTCCGTCGCGTCGCTCATCATCTCCGGGCTGCTCGTCGGCGGGGCCATCGTCGCCGTCCACGGCGCGTGCCGCATGCCCGAGGACCTCTTCCTCGACGACGCTGACGCCGCCAGCGGCAACAGCGCGGCCCAGGGTCTCCTGTCCTTCCTCGGGGCGCCCGGATCTAGGGTTTGAGGCGGCGGCGGGCGACGAGATCTGGTAGGCTTCTTTGGCTCGAGTGTTTCGCGTTACTCTGTAATTGATCTGGATCTGATCTCGTTGGATCTATATCACATTTGTTCTCTAATTCATCATTCTGCAATCCGTAGCTACAGATCTACTACTTGTTTACCTATATTTTGGATCGATGTATCACTTTGCGAAGTTGTGCTGAATATATTGAGTCTCTTGACGAG ] [+] EMBL AK106175 [ ACCGTACCGCAACCGCAACCGCGAGAGCCGAGAGAGAAGCCTTTTTCCCCGATCGATTCCCTTCTCTCCGCTCCGCATCGCCATGGCCTCCTCAGCACCGACGCCGCCGCCGCTCCTCCCGGTGACCAACCCGGCAGCCGCGGGGTCGTCCCCGGCCGCCACCGCCGTGGGATCTGACGCGCCGATCGCAACCCCGGCGTTCCGGCTCTTCCTGAGCAAGCTCTCCGACTCGGCGCGGCGCTCGCTGTCCGACCGGCGGCCGTGGACGGAGCTGGTCGACCGCTCGGCGTTCTCGCGGCCGGACTCCCTCTCCGACGCCACCTCCCGCTTCCGCCGCAACCTCGCCTACTTCCGCGTCAACTACGCCGCCGTGGTGGCCTTCGCGCTCGGGGCGTCCCTCCTCGCGCACCCCTTCTCGCTCCTCGTCCTCCTCGGCCTCCTCGCCGCCTGGTGCTTCCTCTACCTCTTCCGCGGCTCCGACCAGCCCGTCGTCCTCTTCGGTCGCACCTTCTCCGACCGCGAGACGCTGCTCGGCCTCGTCGTCGCGTCGTTCGTGGCCTTCTTCTTCACCTCCGTCGCGTCGCTCATCATCTCCGGGCTGCTCGTCGGCGGGGCCATCGTCGCCGTCCACGGCGCGTGCCGCATGCCCGAGGACCTCTTCCTCGACGACGCTGACGCCGCCAGCGGCAACAGCGCGGCCCAGGGTCTCCTGTCCTTCCTCGGGGCGCCCGGATCTAGGGTTTGAGGCGGCGGCGGGCGACGAGATCTGGTAGGCTTCTTTGGCTCGAGTGTTTCGCGTTACTCTGTAATTGATCTGGATCTGATCTCGTTGGATCTATATCACATTTGTTCTCTAATTCATCATTCTGCAATCCGTAGCTACAGATCTACTACTTGTTTACCTATATTTTGGATCGATGTATCACTTTGCGAAGTTGTGCTGAATATATTGAGTCTCTTGACGAG ] [+] EMBL C71968 [ CCGCAACCGCGAGAGCCGAGAGAGAAGCCTTTTTCCCCGATCGATTCCCTTCTCTCCGNTCCGCATCGCCATGGCCTCCTCAGCACCGACGCCGCCGCCGCTCCTCCCGGTGACCAACCCGGCAGCCGCGGGGTGGTCCCCGGCCGNCACCGCCGTGGGATCTNACGCGCCGATCGNAACCCCGGCGTTCCGGCTCTTCCTGAGCAAGCTCTCCGACTCGGNGCGGCGNTCGC ] [+] EMBL AU161418 [ GGTGGCCTTCGCGCTCGGGGCGTCCCTCCTCGCGCACCCCTTCTCGCTCCTCGTCCTCCTCGGCCTCCTCGCCGCCTGGTGCTTCCTCTACCTCTTCCGCGGCTCCGACCAGCCCGTCGTCCTCTTCGGTCGCACCTTCTCCGACCGCGAGACGCTGCTCGGCCTCGTCGTCGCGTCGTTCGTGGCCTTCTTCTTCACCTCCGTCGCGTCGCTCATCATCTCCGGGCTGCTCGTCGGCGGGGCCATCGTCGCCGTCCACGGCGCGTGCCGCATGCCCGAGGACCTCTTCCTCGACGACGCTGACGCCGCCAGCGGCAACAGCGCGGCCCAGGGTCTCCTGTCCTTCCTCGGGGCGCCCGGATCTAGGGTTTGAGGCGGCGGC GGCGACGAGATCTGGTAGGCTTCTTTGGCTCGAGTGTTTCGCGTTACTCTGTAATTGATCTGGATCTGATCTCGTTGGATCTATAT ACATTTGGTCTCTAATTCATCATTCTGCAATCCG ] [+] EMBL AU101068 [ TCTGTNATTGATCTGGATCTGATCTCGTTGGATCTATATCACATTTGNTCTCTAATTCATCATTCTGCAATCCGTAGCTACAGATCTACTACTTGTTTACCTATATTTTGGATCGATGTATCACTTTGCGAAGTTGTGCTGAATATATTGAGTCTCTTGACGAGATTTAGTGTTAAAATTACTNCCTTATATTGTTTTGAATTAATTTAGCATGAATGTATGAAGAGTATGTCGACTTATCACTGTTTAAATAGTAGAGAAGAATATATGATGGTTCAGCTGTGCATTGTCACTTTTCATTCAAAAAAAAAAAAAAAAA] consensusID : consensus_14075#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 773 fasta sequence [CCATCTCCAAGCCGGACTAGCTCTCCGAGGCCACCTCGCGGCTGCGCCGCAACCTCGCCTACTTCCGCGTCAACTACGCCGCCGTGGTGGCGTTCTCCCTCGCGGCCTCGCTGCTGGCGCACCCCTTCTCCCTCCTCGTCCTCCTCGCCATCCTCGGCGGCTGGTGCTTCCTCTACGTCTTCCGAGCCGCCGACCAGCCCGTCGTTCTCTTCGGCCGCACCTTCACCGACCGCGAGACGCTGCTCGGCCTCGTCGTCGCGTCCGTGCTGGCCTTCTTCATGACCTCCGTGGCGTCGCTCATCATCTCCGGGCTGCTCGTCGGCGGCGCGATCGTTGCCGTGCACGGCGCATTCCGCGTGCCTGAGGACCTCTTCCTTGACGACCCGAGCGTTGGCTCCAATGGCAACACTACCAGCAGGCTGCTCTCCTTCCTCGGGGCGCCCGGATCTGGGGTTTGATGCGGCGCAGGATCTGGTAGGATTCTTGGGCTCGTGGAATTTATTTTGAGTACGAATTGGCATGGATCTGGTTCGTCGGCTGTAGCTAATTGGTTGCCGCTCTGCTTGTGCTTAATTGTGAGTAGTTATGAATATGCAGATCATATTTTGCCTTCTAATATGTGGTTCGAATTATGCAAAGATCTGCTAGATTTGTACTTCACTTGTTAGTTTGAATCTGAGTGGTGACTGGTAAGAATTGTTAGATGTCAGCAACTCAGTATGTCTTGTGCTCTGTTCTTTCAAGTAACTGTACACCGACTCCTTAGCAAGTTT] [+] EMBL AK108526 [CCATCTCCAAGCCGGACTAGCTCTCCGAGGCCACCTCGCGGCTGCGCCGCAACCTCGCCTACTTCCGCGTCAACTACGCCGCCGTGGTGGCGTTCTCCCTCGCGGCCTCGCTGCTGGCGCACCCCTTCTCCCTCCTCGTCCTCCTCGCCATCCTCGGCGGCTGGTGCTTCCTCTACGTCTTCCGAGCCGCCGACCAGCCCGTCGTTCTCTTCGGCCGCACCTTCACCGACCGCGAGACGCTGCTCGGCCTCGTCGTCGCGTCCGTGCTGGCCTTCTTCATGACCTCCGTGGCGTCGCTCATCATCTCCGGGCTGCTCGTCGGCGGCGCGATCGTTGCCGTGCACGGCGCATTCCGCGTGCCTGAGGACCTCTTCCTTGACGACCCGAGCGTTGGCTCCAATGGCAACACTACCAGCAGGCTGCTCTCCTTCCTCGGGGCGCCCGGATCTGGGGTTTGATGCGGCGCAGGATCTGGTAGGATTCTTGGGCTCGTGGAATTTATTTTGAGTACGAATTGGCATGGATCTGGTTCGTCGGCTGTAGCTAATTGGTTGCCGCTCTGCTTGTGCTTAATTGTGAGTAGTTATGAATATGCAGATCATATTTTGCCTTCTAATATGTGGTTCGAATTATGCAAAGATCTGCTAGATTTGTACTTCACTTGTTAGTTTGAATCTGAGTGGTGACTGGTAAGAATTGTTAGATGTCAGCAACTCAGTATGTCTTGTGCTCTGTTCTTTCAAGTAACTGTACACCGACTCCTTAGCAAGTTT] consensusID : consensus_14075#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 692 fasta sequence [GTCGACCCAAGGGGTCCGCCCAAGGNGTCCGGCCCAAGGNGTCCGGCGCCGCCGTGGTGCCTTCGCGCTCGGGGCGTCCCTCCTCGGGCACCCCTTCTCGCTCCTNGTCCTCCTCGGCCTCCTCGCCGCTGGTGCTTCCTCTACCTCTTCCGCGGCTCCGACCAGCCCGTCGTCCTCTTCGGTCGCACCTTCTCCGACCGCGAGACGCTGCTCGGCCTCGTCGTCGCGTCGTTCGTGGCCTTCTTCTTCACCTCCGTCGCGTCGCTCATCATCTCCGGGCTGCTCGTCGGCGGGGCCATCGTCGCCGTCCACGGCGCGTGCCGCATGCCCGAGGACCTCTTCCTCGACGACGCTGACGCCGCCAGCGGCAACAGCGCGGCCCAGGGTCTCCTGTCCTTCCTCGGGGCGCCCGGATCTAGGGTTTGAGGCGGCGGCGGGCGACGAGATCTGGTAGGCTTCTTTGGCTCGAGTGTTTCGCGTTACTCTGTAATTGATCTGGATCTGATCTCGTTGGATCTATATCACATTTGTTCTCTAATTCATCATTCTGCAATCCGTAGCTACAGATCTACTACTTGTTTACCTATATTTTGGATCGATGTATCACTTTGCGAAGTTGTGCTGAATATATTGAGTCTCTTGACGAGATTTAGTGTTAAAATTACTACCTTATATTGTTTTGAATTAAAAAA] [+] EMBL AU161419 [GTCGACCCAAGGGGTCCGCCCAAGGNGTCCGGCCCAAGGNGTCCGGCGCCGCCGTGGTGCCTTCGCGCTCGGGGCGTCCCTCCTCGGGCACCCCTTCTCGCTCCTNGTCCTCCTCGGCCTCCTCGCCGCTGGTGCTTCCTCTACCTCTTCCGCGGCTCCGACCAGCCCGTCGTCCTCTTCGGTCGCACCTTCTCCGACCGCGAGACGCTGCTCGGCCTCGTCGTCGCGTCGTTCGTGGCCTTCTTCTTCACCTCCGTCGCGTCGCTCATCATCTCCGGGCTGCTCGTCGGCGGGGCCATCGTCGCCGTCCACGGCGCGTGCCGCATGCCCGAGGACCTCTTCCTCGACGACGCTGACGCCGCCAGCGGCAACAGCGCGGCCCAGGGTCTCCTGTCCTTCCTCGGGGCGCCCGGATCTAGGGTTTGAGGCGGCGGCGGGCGACGAGATCTGGTAGGCTTCTTTGGCTCGAGTGTTTCGCGTTACTCTGTAATTGATCTGGATCTGATCTCGTTGGATCTATATCACATTTGTTCTCTAATTCATCATTCTGCAATCCGTAGCTACAGATCTACTACTTGTTTACCTATATTTTGGATCGATGTATCACTTTGCGAAGTTGTGCTGAATATATTGAGTCTCTTGACGAGATTTAGTGTTAAAATTACTACCTTATATTGTTTTGAATTAAAAAA] [+] EMBL BI805210 [ GACCAGCCCGTCGTCCTCTTCGGTCGCACCTTCTCCGACCGCGAGACGCTGCTCGGCCTCGTCGTCGCGTCGTTCGTGGCCTTCTTCTTCACCTCCGTCGCGTCGCTCATCATCTCCGGGCTGCTCGTCGGCGGGGCCATCGTCGCCGTCC CGGCGCGTGCCGCATGCCCGAGGACCTCTTCCTCGACCACGCTGACGCCGCCAGCGGCTACAGCGCGGCCCAGGGTCTCCTGTCCTTCCTCGGGGCGCCCGGATCTAGGGTTTGAGGCGGCGGCGGGCGACGAGATCTGGTAGGCTTCTTTGGCTCGAGTGTTTCGCGTTACTCTGTAATTGATCTGGATCTGATCTCGTTGGATCTATATCACATTTGTTCTCTAATTCATCATTCTGCAATCCGTAGCTACAGATCTACTACTTGTTTACCTATATTTTGGATCGATGTATCACTTTGCGAAGTTGTGCTGAATATATTGAGTCTCTTGACGAGATTTAGTGTTAAAATTACTACCTTATATTGTTTTGAAT ] [+] EMBL AK060555 [ GTGTTTCGCGTTACTCTGTAATTGATCTGGATCTGATCTCGTTGGATCTATATCACATTTGTTCTCTAATTCATCATTCTGCAATCCGTAGCTACAGATCTACTACTTGTTTACCTATATTTTGGATCGATGTATCACTTTGCGAAGTTGTGCTGAATATATTGAGTCTCTTGACGAG ] consensusID : consensus_14075#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 567 fasta sequence [NTTCTCGCTCCTCGTCCTCCTCGGCNTCTTCGCCGCCCTGGTGCTTCCTCTACCTCTTCCGCGGNTCCGACCAGCCCGTCGTCCTCTTCGGTCGCACCTTCTCCGACCGCGAGACGCTGCTCGGCCTCGTCGTCGCGTCGTTCGTGGCCTTCTTCTTCACCTCCGTCGCGTCGCTCATCATCTCCGGGCTGCTCGTCGGCGGGGCCATCGTCGCCGTCCACGGCCGTGCCGCATGCCCGAGGACCTCTTCCTCGACGACCTGACGCCGCCAGCGGCAACAGCGCGGCCCAGGGTCTCCTGTCCTTCCTCGGGGCGCCCGGATCTAGGGTTTGAGGCGGCGGCGGGCGACGAGATCTGGTAGGCTTCTTTGGCTCGAGTGTTTCGCGTTACTCTGTAATTGATCTGGATCTGATCTCGTTGGATCTATATCACATTTGTTCTCTAATTCATCATTCTGCAATCCGTAGCTACAGATCTACTACTTGTTTACCTATATTTTGGATCGATGTATCACTTTGCGAAGTTGTGCTGAATATATTGAGTCTCTTGAAAAAAAAAAAAAAAAAA] [+] EMBL AU095954 [NTTCTCGCTCCTCGTCCTCCTCGGCNTCTTCGCCGCCCTGGTGCTTCCTCTACCTCTTCCGCGGNTCCGACCAGCCCGTCGTCCTCTTCGGTCGCACCTTCTCCGACCGCGAGACGCTGCTCGGCCTCGTCGTCGCGTCGTTCGTGGCCTTCTTCTTCACCTCCGTCGCGTCGCTCATCATCTCCGGGCTGCTCGTCGGCGGGGCCATCGTCGCCGTCCACGGCCGTGCCGCATGCCCGAGGACCTCTTCCTCGACGACCTGACGCCGCCAGCGGCAACAGCGCGGCCCAGGGTCTCCTGTCCTTCCTCGGGGCGCCCGGATCTAGGGTTTGAGGCGGCGGCGGGCGACGAGATCTGGTAGGCTTCTTTGGCTCGAGTGTTTCGCGTTACTCTGTAATTGATCTGGATCTGATCTCGTTGGATCTATATCACATTTGTTCTCTAATTCATCATTCTGCAATCCGTAGCTACAGATCTACTACTTGTTTACCTATATTTTGGATCGATGTATCACTTTGCGAAGTTGTGCTGAATATATTGAGTCTCTTGAAAAAAAAAAAAAAAAAA] consensusID : consensus_14075#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 474 fasta sequence [CGAGCTCGTGCCGAATTCGGCACGAGCTTTTTCCCCGATCGATTCCCTTCTCTCCGCTCCGCATCGCCATGGCCTCCTCAGCACCGACGCCGCCGCCGCTCCTCCCGGTGACCAACCCGGCAACGCGGGGTCGTCCCCGGCCGCCACCGCCGTGGGATCTGACGCGCCGATCGCAACCCCGGCGTTCCGGNTCTTCCTGANCAAGCTCTCCGANTCGGCGCGGNGCTCGCTGTCCGANCGGGGGGCGTGGAAAGAACTTGTCGANCGCTCCGGTTTCTTCCNGNCGGAATCCCTCTCCGAAACCACCNNCCGCCTCCGCCGGAAATCGGCTAATTCCGNGTCACTNNCCCCCCNTGGTTGGCTTCCCGCTCCGGGGGTNCCTTCTCCCGCAACCTTCTTGNTCCTTGTTCTNCTCGGGCCCNGGACGCCTGGTNGTTCCTNTTANTTTTTCCGNGGGTCCCAANAAATCGTTTT] [+] EMBL AA753093 [CGAGCTCGTGCCGAATTCGGCACGAGCTTTTTCCCCGATCGATTCCCTTCTCTCCGCTCCGCATCGCCATGGCCTCCTCAGCACCGACGCCGCCGCCGCTCCTCCCGGTGACCAACCCGGCAACGCGGGGTCGTCCCCGGCCGCCACCGCCGTGGGATCTGACGCGCCGATCGCAACCCCGGCGTTCCGGNTCTTCCTGANCAAGCTCTCCGANTCGGCGCGGNGCTCGCTGTCCGANCGGGGGGCGTGGAAAGAACTTGTCGANCGCTCCGGTTTCTTCCNGNCGGAATCCCTCTCCGAAACCACCNNCCGCCTCCGCCGGAAATCGGCTAATTCCGNGTCACTNNCCCCCCNTGGTTGGCTTCCCGCTCCGGGGGTNCCTTCTCCCGCAACCTTCTTGNTCCTTGTTCTNCTCGGGCCCNGGACGCCTGGTNGTTCCTNTTANTTTTTCCGNGGGTCCCAANAAATCGTTTT] consensusID : consensus_14075#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 278 fasta sequence [GCCGCTGCCGATCGCACCCCGGCGTTCCGGCTCTTCCTGAGCAAGCTCTCCGACTCGGCGCGGCGCTCGCTGTCCGACCGGCGGCCGTGGACGGAGCTGGTCGACCGCTCGGCGTTCTCGCGGCCGGACTCCCTCTCCGACGCCACCTCCCGCCTCCGCCGCAACCTCGCCTACTTCCGCGTCAACTACGCCGCCGTGGTGGCCTTCGCGCTCGGGGCGTCCCTCCTCGCGCAGCGGCCGCTAGCGGCCGCGAATTCGCGGCCGCTAGCGGCCGCGAA] [+] EMBL AU225689 [GCCGCTGCCGATCGCACCCCGGCGTTCCGGCTCTTCCTGAGCAAGCTCTCCGACTCGGCGCGGCGCTCGCTGTCCGACCGGCGGCCGTGGACGGAGCTGGTCGACCGCTCGGCGTTCTCGCGGCCGGACTCCCTCTCCGACGCCACCTCCCGCCTCCGCCGCAACCTCGCCTACTTCCGCGTCAACTACGCCGCCGTGGTGGCCTTCGCGCTCGGGGCGTCCCTCCTCGCGCAGCGGCCGCTAGCGGCCGCGAATTCGCGGCCGCTAGCGGCCGCGAA] consensusID : consensus_14075#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 230 fasta sequence [CGGCTGTTCTGGGTCTGCCCCGGGCTGCACCGGCTGTCGTGATCTTGACGGGGCGATCGGAGCCCCGGCTGTTCCGGTTCTTTCCTTGAGCAAGCTCTTCCGACTCGTCGCGGCGCTCGCTGGTCCGACCGGCGGCCGTGGACGAGCTGGTCGACCGCTCGCGTTTTGCGGCCGGACTTCCTTTCGACGCACCTCCGGCTTCGATCGGAACCTGGCCTTGTTCGGGCTAA] [+] EMBL OS38013 [CGGCTGTTCTGGGTCTGCCCCGGGCTGCACCGGCTGTCGTGATCTTGACGGGGCGATCGGAGCCCCGGCTGTTCCGGTTCTTTCCTTGAGCAAGCTCTTCCGACTCGTCGCGGCGCTCGCTGGTCCGACCGGCGGCCGTGGACGAGCTGGTCGACCGCTCGCGTTTTGCGGCCGGACTTCCTTTCGACGCACCTCCGGCTTCGATCGGAACCTGGCCTTGTTCGGGCTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14075#4 ------------------------------------------------------------ consensus_14075#6 ------------------------------------------------------------ consensus_14075#5 ------------------------------------------------------------ consensus_14075#0 ----------------------------------------------------CAAAGCAA 8 consensus_14075#2 ----------------------------GTCGACCCAAGGGGTCCGCCCAAGGNGTCCGG 32 consensus_14075#3 ------------------------------------------------------------ consensus_14075#1 CCATCTCCAAGCCGGACTAGCTCTCCGAGGCCACCTCGCGGCTGCGCCGCAACCTCGCCT 60 consensus_14075#4 ----------------CGAGCTCGTGCCGAATTCGGCACGAGCTTTTTCCCCGATCGATT 44 consensus_14075#6 ------------------------------------------------------------ consensus_14075#5 ------------------------------------------------------------ consensus_14075#0 CCACCGTACCGCAACCGCAACCGCGAGAGCCGAGAGAGAAGCCTTTTTCCCCGATCGATT 68 consensus_14075#2 CCCAAGGNGTC--CGGCGCCGCCGTGGTGCC-TTCGCGCTCGGGGCGTCCCTCCTCGGGC 89 consensus_14075#3 ------------------------------------------------------------ consensus_14075#1 ACTTCCGCGTCAACTACGCCGCCGTGGTGGCGTTCTCCCTCGCGGCCTCGCTGCTGGCGC 120 consensus_14075#4 CCCTTCTCTCCGCTCCGCATCGCCATGGCCTCCTCAGCACCGACGCCGCCGCCGCTCCTC 104 consensus_14075#6 ------------------------------------------------------------ consensus_14075#5 ------------------------------------------------------------ consensus_14075#0 CCCTTCTCTCCGCTCCGCATCGCCATGGCCTCCTCAGCACCGACGCCGCCGCCGCTCCTC 128 consensus_14075#2 ACCCCTTCTCGCTCCTNGTCCTCCTCGGCCTCCTCGCCGC---TGGTGCTTCCTCTACCT 146 consensus_14075#3 ----NTTCTCGCTCCTCGTCCTCCTCGGCNTCTTCGCCGCCC-TGGTGCTTCCTCTACCT 55 consensus_14075#1 ACCCCTTCTCCCTCCTCGTCCTCCTCGCCATCCTCGGCGGC--TGGTGCTTCCTCTACGT 178 consensus_14075#4 CCGGTGACCAACCCGGCAACGCGGGGTC-GTCCCCGGCCGCCACCGCCGT-GGGATCT-G 161 consensus_14075#6 -------------CGGCTGTTCTGGGTCTGCCCCGGGCTGCACCGGCTGTCGTGATCTTG 47 consensus_14075#5 -----------------------------------------------------------G 1 consensus_14075#0 CCGGTGACCAACCCGGCAGCCGCGGGGTCGTCCCCGGCCGCCACCGCCGT-GGGATCT-G 186 consensus_14075#2 CTTCCGCGGCTCCGACCAGCCCGTCGTC-CTCTTCGGTCGCACCTTCTCC---GACCGCG 202 consensus_14075#3 CTTCCGCGGNTCCGACCAGCCCGTCGTC-CTCTTCGGTCGCACCTTCTCC---GACCGCG 111 consensus_14075#1 CTTCCGAGCCGCCGACCAGCCCGTCGTT-CTCTTCGGCCGCACCTTCACC---GACCGCG 234 * consensus_14075#4 ACGC-GCCGATCGCAACCCCGGC-GTTCCGGNTCTTCC--TGANCAAGCTCT-CCGANTC 216 consensus_14075#6 ACGG-GGCGATCGGAGCCCCGGCTGTTCCGGTTCTTTCCTTGAGCAAGCTCTTCCGACTC 106 consensus_14075#5 CCGCTGCCGATCGCA-CCCCGGC-GTTCCGGCTCTTCC--TGAGCAAGCTCT-CCGACTC 56 consensus_14075#0 ACGC-GCCGATCGCAACCCCGGC-GTTCCGGCTCTTCC--TGAGCAAGCTCT-CCGACTC 241 consensus_14075#2 AGAC-GCTGCTCGGCCTCGTCGTCGCGTCGTTCGTGGCCTTCTTCTTCACCT-CCGTCGC 260 consensus_14075#3 AGAC-GCTGCTCGGCCTCGTCGTCGCGTCGTTCGTGGCCTTCTTCTTCACCT-CCGTCGC 169 consensus_14075#1 AGAC-GCTGCTCGGCCTCGTCGTCGCGTCCGTGCTGGCCTTCTTCATGACCT-CCGTGGC 292 * * *** * * * * * * * * ** *** * consensus_14075#4 GGCGCGGNGC-TCGCTG-TCCGANCGGGGGGCGTG-GAAAGAACTTGTCGANCGCTCCGG 273 consensus_14075#6 GTCGCGGCGC-TCGCTGGTCCGACCGGCGGCCGTG-GAC-GAGCTGGTCGACCGCTCGCG 163 consensus_14075#5 GGCGCGGCGC-TCGCTG-TCCGACCGGCGGCCGTG-GACGGAGCTGGTCGACCGCTCGGC 113 consensus_14075#0 GGCGCGGCGC-TCGCTG-TCCGACCGGCGGCCGTG-GACGGAGCTGGTCGACCGCTCGGC 298 consensus_14075#2 GTCGCTCATCATCTCCGGGCTGCTCGTCGGCGGGGCCATCGTCGCCGTCCACGGCGCGTG 320 consensus_14075#3 GTCGCTCATCATCTCCGGGCTGCTCGTCGGCGGGGCCATCGTCGCCGTCCACGGC-CGTG 228 consensus_14075#1 GTCGCTCATCATCTCCGGGCTGCTCGTCGGCGGCGCGATCGTTGCCGTGCACGGCGCATT 352 * *** * ** * * * * ** ** * * * * ** * ** * consensus_14075#4 TTTCTTCCNGNCGGAATCCCTCTCCGAAACC---ACCNNCCGCCTCCGCCGGAAATCGGC 330 consensus_14075#6 TTT--TGCGGCCGGACTTCCTTTC--GACGC---ACCTCCGGCTTCGATCGGAACCTGGC 216 consensus_14075#5 GTTCTCGCGGCCGGACTCCCTCTCCGACGCC---ACCTCCCGCCTCCGCCGCAACCTCGC 170 consensus_14075#0 GTTCTCGCGGCCGGACTCCCTCTCCGACGCC---ACCTCCCGCCTCCGCCGCAACCTCGC 355 consensus_14075#2 CCGCATGCCCGAGGACCTCTTCCTCGACGACGCTGACGCCGCCAGCGGCAACAGCGCGGC 380 consensus_14075#3 CCGCATGCCCGAGGACCTCTTCCTCGACGAC-CTGACGCCGCCAGCGGCAACAGCGCGGC 287 consensus_14075#1 CCGCGTGCCTGAGGACCTCTTCCTTGACGACCCGAGCGTTGGCTCCAATGGCAACACTAC 412 * *** * * * * * * * * consensus_14075#4 TAA-TTCCGNGTCACTNNCCCC-CCNTGGTTGGCTTCCCGCTCCGGGGGTNCCTTC--TC 386 consensus_14075#6 CTT-GTTCGGGCTAA--------------------------------------------- 230 consensus_14075#5 CTACTTCCGCGTCAACTACGCCGCCGTGGTGGCCTTCGCGCTCGGGGCGTCCCTCC--TC 228 consensus_14075#0 CTACTTCCGCGTCAACTACGCCGCCGTGGTGGCCTTCGCGCTCGGGGCGTCCCTCC--TC 413 consensus_14075#2 CCAGGGTCTCCTGTCCTTCCTCGGGGCGCCCGGATCTAGGGTTTGAGGCGGCGGCGGGCG 440 consensus_14075#3 CCAGGGTCTCCTGTCCTTCCTCGGGGCGCCCGGATCTAGGGTTTGAGGCGGCGGCGGGCG 347 consensus_14075#1 CAGCAGGCTGCTCTCCTTCCTCGGGGCGCCCGGATCTGGGGTTTGATGCGGCG------- 465 * consensus_14075#4 CCGCAACC-TTCTTGNTCCTTGTTCTNCTCGGGCCCNGGACGCCTGGTNGTTCCTNTTAN 445 consensus_14075#6 ------------------------------------------------------------ consensus_14075#5 GCGCAGC-------GGCCGCTAGCGGCCGCGAATTCGCGGCCGCTAGCGGCCGCGAA--- 278 consensus_14075#0 GCGCACCCCTTCTCGCTCCTCGTCCTCCTCGGCCTCCTCGCCGCCTGGTGCTTCCTCTAC 473 consensus_14075#2 ACGAGATCTGGTAGGCTTCTTTGGCTCGAGTGTTTCGCGTTACTCTGTAATTGATCTGGA 500 consensus_14075#3 ACGAGATCTGGTAGGCTTCTTTGGCTCGAGTGTTTCGCGTTACTCTGTAATTGATCTGGA 407 consensus_14075#1 -CAGGATCTGGTAGGATTCTTGGGCTCGTGGAATTTATTTTGAGTACGAATTGGCATGGA 524 consensus_14075#4 TTTTTCCGNGGGTCCCAANAAATCGTTTT------------------------------- 474 consensus_14075#6 ------------------------------------------------------------ consensus_14075#5 ------------------------------------------------------------ consensus_14075#0 CTCTTCCGCGGCTCCGACCAGCCCGTCGTCCTCTTCGGTCGCACCTTCTCCGACCGCGAG 533 consensus_14075#2 TCTGATCTCGTTGGATCTATATCACATTTGTTCTCTAATTCATCATTCTGCAATCCG--T 558 consensus_14075#3 TCTGATCTCGTTGGATCTATATCACATTTGTTCTCTAATTCATCATTCTGCAATCCG--T 465 consensus_14075#1 TCTGGT-TCGTCGG--CTGTAGCTAATTGGTTGCCGCTCTGCTTGTGCTTAATTGTGAGT 581 consensus_14075#4 ------------------------------------------------------------ consensus_14075#6 ------------------------------------------------------------ consensus_14075#5 ------------------------------------------------------------ consensus_14075#0 ACGCTGCTCGGCCTCGTCGTCGCGTCGTTCGTGGCCTTCTTCTTCACCTCCGTCGCGTCG 593 consensus_14075#2 AGCTACAGATCTACTACTTGTTTACCTATATTTTGGATCGATGTATCACTT-TGCGAAGT 617 consensus_14075#3 AGCTACAGATCTACTACTTGTTTACCTATATTTTGGATCGATGTATCACTT-TGCGAAGT 524 consensus_14075#1 AGTTATGAATATGCAGATCATAT-TTTGCCTTCTAATATGTGGTTCGAATTATGCAAAGA 640 consensus_14075#4 ------------------------------------------------------------ consensus_14075#6 ------------------------------------------------------------ consensus_14075#5 ------------------------------------------------------------ consensus_14075#0 CTCATCATCTCCGGGCTGCTCGTCGGCGGGGCCATCGTCGCCGTCCACGGCGCGTGCCGC 653 consensus_14075#2 TGTGCTGAATATATTGAGTCTCTTGACGAGATTTAGTGTTAAAATTACTACCTTATATTG 677 consensus_14075#3 TGTGCTGAATATATTGAGTCTCTTGAAAAAAAAAAAAAAAAAA----------------- 567 consensus_14075#1 TCTGCTAGATTTGT-ACTTCACTTGTTAGTTTGAATCTGAGTGGTGACTGGTAAGAATTG 699 consensus_14075#4 ------------------------------------------------------------ consensus_14075#6 ------------------------------------------------------------ consensus_14075#5 ------------------------------------------------------------ consensus_14075#0 ATGCCCGAGGACCTCTTCCTCGACGACGCTGACGCCGCCAGCGGCAACAGCGCGGCCCAG 713 consensus_14075#2 TTTTGAATTAAAAAA--------------------------------------------- 692 consensus_14075#3 ------------------------------------------------------------ consensus_14075#1 TTAGATGTCAGCAACTCAGTATGTCTTGTGCTCTGTTCTTTCAAGTAACTGTACACCGAC 759 consensus_14075#4 ------------------------------------------------------------ consensus_14075#6 ------------------------------------------------------------ consensus_14075#5 ------------------------------------------------------------ consensus_14075#0 GGTCTCCTGTCCTTCCTCGGGGCGCCCGGATCTAGGGTTTGAGGCGGCGGCGGGCGACGA 773 consensus_14075#2 ------------------------------------------------------------ consensus_14075#3 ------------------------------------------------------------ consensus_14075#1 TCCTTAGCAAGTTT---------------------------------------------- 773 consensus_14075#4 ------------------------------------------------------------ consensus_14075#6 ------------------------------------------------------------ consensus_14075#5 ------------------------------------------------------------ consensus_14075#0 GATCTGGTAGGCTTCTTTGGCTCGAGTGTTTCGCGTTACTCTGTAATTGATCTGGATCTG 833 consensus_14075#2 ------------------------------------------------------------ consensus_14075#3 ------------------------------------------------------------ consensus_14075#1 ------------------------------------------------------------ consensus_14075#4 ------------------------------------------------------------ consensus_14075#6 ------------------------------------------------------------ consensus_14075#5 ------------------------------------------------------------ consensus_14075#0 ATCTCGTTGGATCTATATCACATTTGTTCTCTAATTCATCATTCTGCAATCCGTAGCTAC 893 consensus_14075#2 ------------------------------------------------------------ consensus_14075#3 ------------------------------------------------------------ consensus_14075#1 ------------------------------------------------------------ consensus_14075#4 ------------------------------------------------------------ consensus_14075#6 ------------------------------------------------------------ consensus_14075#5 ------------------------------------------------------------ consensus_14075#0 AGATCTACTACTTGTTTACCTATATTTTGGATCGATGTATCACTTTGCGAAGTTGTGCTG 953 consensus_14075#2 ------------------------------------------------------------ consensus_14075#3 ------------------------------------------------------------ consensus_14075#1 ------------------------------------------------------------ consensus_14075#4 ------------------------------------------------------------ consensus_14075#6 ------------------------------------------------------------ consensus_14075#5 ------------------------------------------------------------ consensus_14075#0 AATATATTGAGTCTCTTGACGAGATTTAGTGTTAAAATTACTACCTTATATTGTTTTGAA 1013 consensus_14075#2 ------------------------------------------------------------ consensus_14075#3 ------------------------------------------------------------ consensus_14075#1 ------------------------------------------------------------ consensus_14075#4 ------------------------------------------------------------ consensus_14075#6 ------------------------------------------------------------ consensus_14075#5 ------------------------------------------------------------ consensus_14075#0 TTAATTTAGCATGAATGTATGAAGAGTATGTCGACTTATCACTGTTTAAATAGTAGAGAA 1073 consensus_14075#2 ------------------------------------------------------------ consensus_14075#3 ------------------------------------------------------------ consensus_14075#1 ------------------------------------------------------------ consensus_14075#4 ---------------------------------------------------------- consensus_14075#6 ---------------------------------------------------------- consensus_14075#5 ---------------------------------------------------------- consensus_14075#0 GAATATATGATGGTTCAGCTGTGCATTGTCACTTTTCATTCAAAAAAAAAAAAAAAAA 1131 consensus_14075#2 ---------------------------------------------------------- consensus_14075#3 ---------------------------------------------------------- consensus_14075#1 ---------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||