These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14093#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1723 fasta sequence [CTCAGTGACACTCTCTTAGCAAGCAAGCTAGCTTAGCCAGGAGAGCTCCATTGCCATGGCGGCCACCACCACCATCCCTCTCCTCCTCCTCCTCCTGGCCGCCACCGTCGCCGCCGCCGCCGCCGAGCTCTCCGTGTACCACAACGTGCACCCCTCGTCGCCGTCCCCGCTCGAGTCCATCATCGCGCTCGCCCGCGACGACGACGCCCGCCTCCTCTTCCTCTCCTCCAAGGCAGCCACCGCCGGCGTCTCCTCCGCCCCCGTCGCCTCCGGCCAGGCCCCCCCGTCCTACGTCGTCCGGGCCGGCCTCGGCTCGCCGTCGCAGCAGCTGCTGCTGGCGCTCGACACCAGCGCCGACGCGACGTGGGCGCACTGCTCGCCGTGCGGCACGTGCCCGAGCAGCAGCCTCTTCGCCCCGGCCAACTCCTCCTCCTACGCCTCCCTCCCGTGCTCCTCGTCGTGGTGCCCGCTGTTCCAGGGCCAGGCGTGCCCGGCGCCGCAGGGCGGCGGCGACGCGGCGCCGCCGCCGGCGACGCTGCCGACGTGCGCCTTCTCCAAGCCGTTCGCCGACGCGTCGTTCCAGGCGGCGCTCGCCAGCGACACGCTGAGGCTGGGCAAGGACGCCATCCCGAACTACACGTTCGGGTGCGTGAGCTCGGTGACGGGGCCGACGACGAACATGCCAAGGCAAGGGCTGCTCGGCCTCGGGCGTGGCCCCATGGCGCTGCTCTCCCAGGCCGGGAGCTTGTACAATGGCGTCTTCTCCTACTGCCTCCCGAGCTACAGGTCATACTACTTCTCCGGCTCGCTCCGGCTGGGCGCCGGCGGCGGGCAGCCGAGGAGCGTCCGGTACACGCCGATGCTGAGGAACCCGCACAGGTCGTCTCTCTACTACGTGAACGTGACGGGGCTCAGCGTGGGGCACGCGTGGGTGAAGGTCCCCGCGGGATCGTTCGCGTTCGACGCCGCCACCGGCGCCGGCACGGTGGTGGACTCCGGCACGGTGATCACGCGGTGGACGGCGCCGGTGTACGCGGCGCTGCGGGAGGAGTTCCGGCGGCAGGTAGCGGCGCCGAGCGGGTACACGTCGCTGGGCGCGTTCGACACGTGCTTCAACACCGACGAGGTGGCCGCCGGCGGAGCCCCCGCGGTGACGGTGCACATGGACGGCGGCGTGGACCTGGCGCTGCCGATGGAGAACACGCTCATCCACAGCAGCGCCACGCCGCTGGCCTGCCTCGCCATGGCCGAGGCGCCGCAGAACGTCAACTCCGTCGTCAACGTCATCGCCAACCTGCAGCAGCAGAACATCCGGGTCGTCTTCGACGTCGCCAACTCCCGCGTCGGCTTCGCCAAGGAGTCCTGCAACTAATTAAGAATTAAGATTAATTAAGATGATCTACCGCTATCTCATCTAGAGCCAAGCTGCTGCTAGCAAATGCACGAGAACGGCTTGTGCAGTCTATGTATTCTCTTCTTTTCCCTTTCTGAAATCACGGTGTCCTCTTGTGGGCTTGTAGCTTTCCGATCTGTGCAATAAGGTATACGTGACATCAAAACTTGGTCA-CGGGCGCCTGTCTCATCTGTATGTGCCAATAGGGCTATATCTAGGTGATTAC-GTAC-GTACTCAGGGTTTTACCAGTGTGAATTGGTATGTTTACATCGATCTTAAAGATCTTCATCATTTGCATCGCTAGAAAAACTTCATATGAGAATACCAAAT] [+] EMBL AK062232 [CTCAGTGACACTCTCTTAGCAAGCAAGCTAGCTTAGCCAGGAGAGCTCCATTGCCATGGCGGCCACCACCACCATCCCTCTCCTCCTCCTCCTCCTGGCCGCCACCGTCGCCGCCGCCGCCGCCGAGCTCTCCGTGTACCACAACGTGCACCCCTCGTCGCCGTCCCCGCTCGAGTCCATCATCGCGCTCGCCCGCGACGACGACGCCCGCCTCCTCTTCCTCTCCTCCAAGGCAGCCACCGCCGGCGTCTCCTCCGCCCCCGTCGCCTCCGGCCAGGCCCCCCCGTCCTACGTCGTCCGGGCCGGCCTCGGCTCGCCGTCGCAGCAGCTGCTGCTGGCGCTCGACACCAGCGCCGACGCGACGTGGGCGCACTGCTCGCCGTGCGGCACGTGCCCGAGCAGCAGCCTCTTCGCCCCGGCCAACTCCTCCTCCTACGCCTCCCTCCCGTGCTCCTCGTCGTGGTGCCCGCTGTTCCAGGGCCAGGCGTGCCCGGCGCCGCAGGGTGGCGGCGACGCGGCGCCGCCGCCGGCGACGCTGCCGACGTGCGCCTTCTCCAAGCCGTTCGCCGACGCGTCGTTCCAGGCGGCGCTCGCCAGCGACACGCTGAGGCTGGGCAAGGACGCCATCCCGAACTACACGTTCGGGTGCGTGAGCTCGGTGACGGGGCCGACGACGAACATGCCAAGGCAAGGGCTGCTCGGCCTCGGGCGTGGCCCCATGGCGCTGCTCTCCCAGGCCGGGAGCTTGTACAATGGCGTCTTCTCCTACTGCCTCCCGAGCTACAGGTCATACTACTTCTCCGGCTCGCTCCGGCTGGGCGCCGGCGGCGGGCAGCCGAGGAGCGTCCGGTACACGCCGATGCTGAGGAACCCGCACAGGTCGTCTCTCTACTACGTGAACGTGACGGGGCTCAGCGTGGGGCACGCGTGGGTGAAGGTCCCCGCGGGATCGTTCGCGTTCGACGCCGCCACCGGCGCCGGCACGGTGGTGGACTCCGGCACGGTGATCACGCGGTGGACGGCGCCGGTGTACGCGGCGCTGCGGGAGGAGTTCCGGCGGCAGGTAGCGGCGCCGAGCGGGTACACGTCGCTGGGCGCGTTCGACACGTGCTTCAACACCGACGAGGTGGCCGCCGGCGGAGCCCCCGCGGTGACGGTGCACATGGACGGCGGCGTGGACCTGGCGCTGCCGATGGAGAACACGCTCATCCACAGCAGCGCCACGCCGCTGGCCTGCCTCGCCATGGCCGAGGCGCCGCAGAACGTCAACTCCGTCGTCAACGTCATCGCCAACCTGCAGCAGCAGAACATCCGGGTCGTCTTCGACGTCGCCAACTCCCGCGTCGGCTTCGCCAAGGAGTCCTGCAACTAATTAAGAATTAAGATTAATTAAGATGATCTACCGCTATCTCATCTAGAGCCAAGCTGCTGCTAGCAAATGCACGAGAACGGCTTGTGCAGTCTATGTATTCTCTTCTTTTCCCTTTCTGAAATCACGGTGTCCTCTTGTGGGCTTGTAGCTTTCCGATCTGTGCAATAAGGTATACGTGACATCAAAACTTGGTCA CGGGCGCCTGTCTCATCTGTATGTGCCAATAGGGCTATATCTAGGTGATTAC GTAC GTACTCAAGGTTTTACCAGTGTGAATTGGTATGTTTACATCGATCTTAAAGATCTTCATCATTTGCATCGCTAGAAAAACTTCATATGAGAATACCAAAT] [+] EMBL AK120050 [ TCTCTTAGCAAGCAAGCTAGCTTAGCCAGGAGAGCTCCATTGCCATGGCGGCCACCACCACCATCCCTCTCCTCCTCCTCCTCCTGGCCGCCACCGTCGCCGCCGCCGCCGCCGAGCTCTCCGTGTACCACAACGTGCACCCCTCGTCGCCGTCCCCGCTCGAGTCCATCATCGCGCTCGCCCGCGACGACGACGCCCGCCTCCTCTTCCTCTCCTCCAAGGCAGCCACCGCCGGCGTCTCCTCCGCCCCCGTCGCCTCCGGCCAGGCCCCCCCGTCCTACGTCGTCCGGGCCGGCCTCGGCTCGCCGTCGCAGCAGCTGCTGCTGGCGCTCGACACCAGCGCCGACGCGACGTGGGCGCACTGCTCGCCGTGCGGCACGTGCCCGAGCAGCAGCCTCTTCGCCCCGGCCAACTCCTCCTCCTACGCCTCCCTCCCGTGCTCCTCGTCGTGGTGCCCGCTGTTCCAGGGCCAGGCGTGCCCGGCGCCGCAGGGCGGCGGCGACGCGGCGCCGCCGCCGGCGACGCTGCCGACGTGCGCCTTCTCCAAGCCGTTCGCCGACGCGTCGTTCCAGGCGGCGCTCGCCAGCGACACGCTGAGGCTGGGCAAGGACGCCATCCCGAACTACACGTTCGGGTGCGTGAGCTCGGTGACGGGGCCGACGACGAACATGCCAAGGCAAGGGCTGCTCGGCCTCGGGCGTGGCCCCATGGCGCTGCTCTCCCAGGCCGGGAGCTTGTACAATGGCGTCTTCTCCTACTGCCTCCCGAGCTACAGGTCATACTACTTCTCCGGCTCGCTCCGGCTGGGCGCCGGCGGCGGGCAGCCGAGGAGCGTCCGGTACACGCCGATGCTGAGGAACCCGCACAGGTCGTCTCTCTACTACGTGAACGTGACGGGGCTCAGCGTGGGGCACGCGTGGGTGAAGGTCCCCGCGGGATCGTTCGCGTTCGACGCCGCCACCGGCGCCGGCACGGTGGTGGACTCCGGCACGGTGATCACGCGGTGGACGGCGCCGGTGTACGCGGCGCTGCGGGAGGAGTTCCGGCGGCAGGTAGCGGCGCCGAGCGGGTACACGTCGCTGGGCGCGTTCGACACGTGCTTCAACACCGACGAGGTGGCCGCCGGCGGAGCCCCCGCGGTGACGGTGCACATGGACGGCGGCGTGGACCTGGCGCTGCCGATGGAGAACACGCTCATCCACAGCAGCGCCACGCCGCTGGCCTGCCTCGCCATGGCCGAGGCGCCGCAGAACGTCAACTCCGTCGTCAACGTCATCGCCAACCTGCAGCAGCAGAACATCCGGGTCGTCTTCGACGTCGCCAACTCCCGCGTCGGCTTCGCCAAGGAGTCCTGCAACTAATTAAGAATTAAGATTAATTAAGATGATCTACCGCTATCTCATCTAGAGCCAAGCTGCTGCTAGCAAATGCACGAGAACGGCTTGTGCAGTCTATGTATTCTCTTCTTTTCCCTTTCTGAAATCACGGTGTCCTCTTGTGGGCTTGTAGCTTTCCGATCTGTGCAATAAGGTATACGTGACATCAAAACTTGGTCA CGGGCGCCTGTCTCATCTGTATGTGCCAATAGGGCTATATCTAGGTGATTAC GTAC GTACTCAGGGTTTTACCAGTGTGAATTGGTATGTTTACATCGATCTTAAAGATCTTCATCAT ] [+] EMBL CB642786 [ TCTTACCTA AAAGCTAGCTTAGCCAGGAGAGCTCCATTGCCATGGCGGCCACCACCACCATCCCTCTCCTCCTCCTCCCCCTGGAAGCCACCGTCGCCGCCGCCGCCGCCGAGCTCTCCGTGTACCACAACGTGCACCCCTCGTCGCCGTCCCCGCTCGAGTCCATCATCGCGCTCGCCCGCGACGACGACGCCCGCCTCCTCTTCCTCTCCTCCAAGGCAGCCACCGCCGGCGTCTCCTCCGCCCCCGTCGCCTCCGGCCAGGCCCCCCCGTCCTACGTCGTCCGGGCCGGCCTCGGCTCGCCGTCGCAGCAGCTGCTGCTGGCGCTCGACACCAGCGCCGACGCGACGTGGGCGCACTGCTCGCCGTGCGGCACGTGCCCGAGCAGCAGCCTCTTCGCCCCGGCCAACTCCTCCTCCTACGCCTCCCTCCCGTGCTCCTCGTCGTGGTGCCCGCTGTTCCAGGGCCAGGCGTGCCCGGCGCCGCAGGGCGGCGGCGACGCGGCGCCGCCGCCGGCGACGCTGCCGACGTGCGCCTTCTCCAAGCCGTTCGCCGACGCGTCGTTCCAGGCGGCGCTCGCCAGCGACACGCTGAGGCTGGGCAAGGACGCCATCCCGAACTACACGTTCGGGTGCGTGAGCTCGGTGACGGGGCCGACGACGAACATGCCAAGGCAAGGGCTGCTCGGCCTCGGGCGTGGCCCCATGGCGCTGCTCTCCCAGGCCGGGAGCTTGTACAATGGCGTCTTCTCCTACTGCCTCCCGAGCTACAGGTCATACTACTTCTCCGGCTCGCTCCGGCT ] [+] EMBL CB642350 [ TTAGCAAGCAAGCTAGCTTAGCCAGGAGAGCTCCATTGCCATGGCGGCCACCACCACCATCCCTCTCCTCCTCCTCCTCCTGGCCGCCACCGTCGCCGCCGCCGCCGCCGAGCTCTCCGTGTACCACAACGTGCACCCCTCGTCGCCGTCCCCGCTCGAGTCCATCATCGCGCTCGCCCGCGACGACGACGCCCGCCTCCTCTTCCTCTCCTCCAAGGCAGCCACCGCCGGCGTCTCCTCCGCCCCCGTCGCCTCCGGCCAGGCCCCCCCGTCCTACGTCGTCCGGGCCGGCCTCGGCTCGCCGTCGCAGCAGCTGCTGCTGGCGCTCGACACCAGCGCCGACGCGACGTGGGCGCACTGCTCGCCGTGCGGCACGTGCCCGAGCAGCAGCCTCTTCGCCCCGGCCAACTCCTCCTCCTACGCCTCCCTCCCGTGCTCCTCGTCGTGGTGCCCGCTGTTCCAGGGCCAGGCGTGCCCGGCGCCGCAGGGCGGCGGCGACGCGGCGCCGCCGCCGGCGACGCTGCCGACGTGCGCCTTCTCCAAGCCGTTCGCCGACGCGTCGTTCCAGGCGGCGCTCGCCAGCGACACGCTGAGGCTGGGCAAGGACGCCATCCCGAACTACACGTTCGGGTGCGTGAGCTCGGTGACGGGGCCGACGACGAACATGCCAAGGCAAGGGCTGCTCGGCCTCGGGCGTGGCCCCATGGCGCTGCTCTCCCAGGCCGGGAGCTTGTACAATGGCGTCTTCTCCTACTGCCTCCCGAGCTACAGGTCATACTACTTCTCCG ] [+] EMBL AU222631 [ AGCAAGCAAGCTAGCTTAGCCAGGAGAGCTCCATTGCCATGGCGGCCACCACCACCATCCCTCTCCTCCTCCTCCTCCTGGCCGCCACCGTCGCCGCCGCCGCCGCCGAGCTCTCCGTGTACCACAACGTGCACCCCTCGTCGCCGTCCCCGCTCGAGTCCATCATCGCGCTCGCCCGCGACGACGACGCCCGCCTCCTCTTCCTCTCCTCCAAGGCAGCCACCGCCGGCGTCTCCTCCGCCCCCGTCGCCTCCGGNCAGGCCCCCCCGTCCTACGTCGTNCGGGCCGGCCTCGGNTCGCCGTatgn ] [+] EMBL AU093646 [ GCTAGCTTAGCCAGGAGAGCTCCATTGCCATGGNGGCCACCACCACCATCCCTCTCCTCCTCCTCCTCCTGGCCGCCACCGTCGCCGCCGCCGCCGCCGAGCTCTCCGTGTACCACAACGTGCACCCCTCGTNGCCGTCCCCGCTCGATTCCATCATCGCGCTCGCCCGCGACGACGACGNCCGNNTCCTCTTCCTCTCCTCCAAGGCAGC ] [+] EMBL AU172968 [ CGCCGCCGCCGGCGACGCTGCCGACGTGCGCCTTCTCCAAGCCGTTCGCCGACGCGTCGTTCCAGGCGGCGCTCGCCAGCGACACGCTGAGGCTGGGCAAGGACGCCATCCCGAACTACACGTTCGGGTGCGTGAGCTCGGTGACGGGGCCGACGACGAACATGCCAAGGCAAGGGCTGCTCGGCCTCGGGCGTGGCCCCATGGCGCTGCTCTCCCAGGCCGGGAGCTTGTACAATGGCGTCTTCTCCTACTGCCTCCCGAGCTACAGGTCATACTACTTCTCCGGCTCGCTCCGGCTGGGCGCCGGCGGCGGGCAGCCGAGGAGCGTCCGGTACACGCCGATGCTGAGGAACCCGCACAGGTCGTCTCTCTACTACGTGAACGTGACGGGGCTCAGCGTGGGGCACGCGTGGGTGAAGGTCC ] [-] EMBL CB642351 [ GACGGGGCTCAGCGTGGGGCACGCGTGGGTGAAGGTCCCCGCGGGATCGTTCGCGTTTGACGCCGCCACCGGCGCCGGCACGGTGGTGGACTCCGGCACGGTGATCACGCGGTGGACGGCGCCGGTGTACGCGGCGCTGCGGGAGGAGTTCCGGCGGCAGGTAGCGGCGCCGAGCGGGTACACGTCGCTGGGCGCGTTCGACACGTGCTTCAACACCGACGAGGTGGCCGCCGGCGGAGCCCCCGCGGTGACGGTGCACATGGACGGCGGCGTGGACCTGGCGCTGCCGATGGAGAACACGCTCATCCACAGCAGCGCCACGCCGCTGGCCTGCCTCGCCATGGCCGAGGCGCCGCAGAACGTCAACTCCGTCGTCAACGTCATCGCCAACCTGCAGCAGCAGAACATCCGGGTCGTCTTCGACGTCGCCAACTCCCGCGTCGGCTTCGCCAAGGAGTCCTGCAACTAATTAAGAATTAAGATTAATTAAGATGATCTACCGCTATCTCATCTAGAGCCAAGCTGCTGCTAGCAAATGCACGAGAACGGCTTGTGCAGTCTATGTATTCTCTTCTTTTCCCTTTCTGAAATCACGGTGTCCTCTTGTGGGCTTGTAGCTTTCCGATCTGTGCAATAAGGTATACGTGACATCAAAACTTGGTCA CGGGCGCCTGTCTCATCTGTATGTGCCAATAGGGCTATATCTAGGTGATTAC ] [+] EMBL BI805039 [ TGGACGGCGGCGTGGACCTGGCGCT CCGATGGAGAACACGCTCATCCACAGCAGCGCCACGCCGCTGGCCTGCCTCGCCATGGCCGAGGCGCCGCAGAACGTCAACTCCGTCGTCAACGTCATCGCCAACCTGCAGCAGCAGAACATCCGGGTCGTCTTCGACGTCGCCAACTCCCGCGTCGGCTTCGCCAAGGAGTCCTGCAACTAATTAAGAATTAAGATTAATTAAGATGATCTACCGCTATCTCATCTAGAGCCAAGCTGCTGCTAGCAAATGCACGAGAACGGCTTGTGCAGTCTATGTATTCTCTTCTTTTCCCTTTCTGAAATCACGGTGTCCTCTTGTGGGCTTGTAGCTTTCCGATCTGTGCAATAAGGTATACGTGACATCAAAACTTGGTCACCGGGCGCCTGTCTCATCTGTATGTGCC ATAGGGCTATATCTAGGTGATTAC GTAT GTACTCAGGGTTTTACCAGTGTGAATTGGTATGTTTACATCGATCTTAAAGATCTTCATCAaaaaa ] [+] EMBL AU174285 [ GGAGAACACGCTCATCCACAGCAGCGCCACGCCGCTGGCCTGCCTCGCCATGGCCGAGGCGCCGCAGAACGTCAACTCCGTCGTCAACGTCATCGCCAACCTGCAGCAGCAGAACATCCGGGTCGTCTTCGACGTCGCCAACTCCCGCGTCGGCTTCGCCAAGGAGTCCTGCAACTAATTAAGAATTAAGATTAATTAAGATGATCTACCGNTATCTCATCTAGAGCCAAGCTGCTGNTAGCAAATGCACGAGAACGGNTTGTGCAGTC ] [+] EMBL AU093647 [ GCCTGCCTCGCCATGGCCGAGGCGCCGCAGAACGTCAA TCCGTCGTCAACGTCATCGCCAACCTGCAGCAGCAGAACATCCGGGT NTCTTCGACGTCGCCAACTCCCGCGTCCG TTCGCCAAGGAGTCCTGCAACTAATTAAGAATTAAGATTAATTAAGATGATCTACCGCTATCTCATCTAGAGCCAAGCTGCTGCTAGCAAATGCACGAGAACGGCTTGTGCAGTCTATGTATTCTCTTCTTTTCCCTTTCTGAAATCACGGTGTCCTCTTGTGGGCTTGTAGCTTTCCGATCTGTGCAATAAGGTATACGTGACATCAAAACTTGGTCAaaaaa ] [+] EMBL AU174286 [ GCCGAGGCGCCGCAGAACGTCAACTCCGTCGTCAACGTCATCGCCAACCTGCAGCAGCAGAACATCCGGGTCGTCTTCGACGTCGCCAACTCCCGCGTCGGCTTCGCCAAGGAGTCCTGCAACTAATTAAGAATTAAGATTAATTAAGATGATCTACCGCTATCTCATCTAGAGCCAAGCTGCTGCTAGCAAATGCACGAGAACGGCTTGTGCAGTCTATGTATTCTCTTCTTTTCCCTTTCTGAAATCACGGTGTCCTCTTGTGGGCTTGTAGCTTTCCGATCTGTGCAATAAGGTATACGTGACATCAAAACTTGGTCA CGGGCGCCTGTCTCATCTGTATGTGCCAATAGGGCTATATCTAGGTGATTACGGTACGGTACTCAGGGTTTTACCAGTGTGAATTGGTATGTTTACATCGATCTTAAAaaaaaaa ] consensusID : consensus_14093#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 628 fasta sequence [AGNTAGCGGCGCCGAGCGGNTACACGTCGCTGNGCGCGTTCGACACGTGCTTCAACACCGNCNAGNTGGCCGCCGNCGGAGCCCCCGCGGTGACGGTGCACATGGACGGCGGCGTGGACCTGGCGCTNCCGNTGGAGAACACGCTCATCCTCAGCAGCGCCACGCCGNTNGCCTGCCTCGCCATGGCCGAGGCGCCGCAGAACGTCAACTCCGTCGTCAACGTCATCGCCAACCTGCAGCAGCAGAACATCCGGGTCTCTTCGACGTCGCCAACTCCCGCGGTACGTTCGCCAAGGAGTCCTGCAACTAATTAAGAATTAAGATTAATTAAGATGATCTNCCGCTATCTCATCTAGAGCCAAGCTGCTGCTAGCAAATGCACGAGAACGGCTTGTGCAGTCTATGTATTCTCTTCTTTTCCCTTTCTGAAATCACGGTGTCCTCTTGTGGGCTTNTAGCTTTCCGATCTGTGCAATAAGGTATACGTGACATNAAAACTTGGTCACGGGCGCCTGTNTCATCTGTATGTGCCAATAGGGCTATATCTAGGTGATTACGTACGTACTCAGGGTTTTACCNGTGTGAATTGGNNTGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU030803 [AGNTAGCGGCGCCGAGCGGNTACACGTCGCTGNGCGCGTTCGACACGTGCTTCAACACCGNCNAGNTGGCCGCCGNCGGAGCCCCCGCGGTGACGGTGCACATGGACGGCGGCGTGGACCTGGCGCTNCCGNTGGAGAACACGCTCATCCTCAGCAGCGCCACGCCGNTNGCCTGCCTCGCCATGGCCGAGGCGCCGCAGAACGTCAACTCCGTCGTCAACGTCATCGCCAACCTGCAGCAGCAGAACATCCGGGTCTCTTCGACGTCGCCAACTCCCGCGGTACGTTCGCCAAGGAGTCCTGCAACTAATTAAGAATTAAGATTAATTAAGATGATCTNCCGCTATCTCATCTAGAGCCAAGCTGCTGCTAGCAAATGCACGAGAACGGCTTGTGCAGTCTATGTATTCTCTTCTTTTCCCTTTCTGAAATCACGGTGTCCTCTTGTGGGCTTNTAGCTTTCCGATCTGTGCAATAAGGTATACGTGACATNAAAACTTGGTCACGGGCGCCTGTNTCATCTGTATGTGCCAATAGGGCTATATCTAGGTGATTACGTACGTACTCAGGGTTTTACCNGTGTGAATTGGNNTGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_14093#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 198 fasta sequence [CAAGCAAGCTAGCTTAGCCAGGAGAGCTCCATTGCCATGGNGGCCACCACCACCATCCCTCTCCTACTCCTCCTCCTGGCCGCCACCGTCGNCGCCGACGACGCCGAGCTCTCCGTGTACCANAACGTGCACCCCTNGTNGNCGTCCCCGGTCGAGTCCATNATCGGGNTCGNCCGCNACGACGACGNCCGGCTCCTN] [+] EMBL OSS11427A [CAAGCAAGCTAGCTTAGCCAGGAGAGCTCCATTGCCATGGNGGCCACCACCACCATCCCTCTCCTACTCCTCCTCCTGGCCGCCACCGTCGNCGCCGACGACGCCGAGCTCTCCGTGTACCANAACGTGCACCCCTNGTNGNCGTCCCCGGTCGAGTCCATNATCGGGNTCGNCCGCNACGACGACGNCCGGCTCCTN] consensusID : consensus_14093#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 167 fasta sequence [TGCTGCTAGCAAATGCACGAGAACGGCTTGTGCAGTCTATGTATTCTCTTCTTTTCCCTTTNTGAAATNNCGGTGTCCTCTTGTGGGNTTNTNGCTTTCCGATCTGTGCNATAAGGTNTNCGTGNTNTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU166209 [TGCTGCTAGCAAATGCACGAGAACGGCTTGTGCAGTCTATGTATTCTCTTCTTTTCCCTTTNTGAAATNNCGGTGTCCTCTTGTGGGNTTNTNGCTTTCCGATCTGTGCNATAAGGTNTNCGTGNTNTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14093#1 ------------------------------------------------------------ consensus_14093#3 ------------------------------------------------------------ consensus_14093#0 CTCAGTGACACTCTCTTAGCAAGCAAGCTAGCTTAGCCAGGAGAGCTCCATTGCCATGGC 60 consensus_14093#2 ------------------------------------------------------------ consensus_14093#1 ------------------------------------------------------------ consensus_14093#3 ------------------------------------------------------------ consensus_14093#0 GGCCACCACCACCATCCCTCTCCTCCTCCTCCTCCTGGCCGCCACCGTCGCCGCCGCCGC 120 consensus_14093#2 ------------------------------------------------------------ consensus_14093#1 ------------------------------------------------------------ consensus_14093#3 ------------------------------------------------------------ consensus_14093#0 CGCCGAGCTCTCCGTGTACCACAACGTGCACCCCTCGTCGCCGTCCCCGCTCGAGTCCAT 180 consensus_14093#2 ------------------------------------------------------------ consensus_14093#1 ------------------------------------------------------------ consensus_14093#3 ------------------------------------------------------------ consensus_14093#0 CATCGCGCTCGCCCGCGACGACGACGCCCGCCTCCTCTTCCTCTCCTCCAAGGCAGCCAC 240 consensus_14093#2 ------------------------------------------------------------ consensus_14093#1 ------------------------------------------------------------ consensus_14093#3 ------------------------------------------------------------ consensus_14093#0 CGCCGGCGTCTCCTCCGCCCCCGTCGCCTCCGGCCAGGCCCCCCCGTCCTACGTCGTCCG 300 consensus_14093#2 ------------------------------------------------------------ consensus_14093#1 ------------------------------------------------------------ consensus_14093#3 ------------------------------------------------------------ consensus_14093#0 GGCCGGCCTCGGCTCGCCGTCGCAGCAGCTGCTGCTGGCGCTCGACACCAGCGCCGACGC 360 consensus_14093#2 ------------------------------------------------------------ consensus_14093#1 ------------------------------------------------------------ consensus_14093#3 ------------------------------------------------------------ consensus_14093#0 GACGTGGGCGCACTGCTCGCCGTGCGGCACGTGCCCGAGCAGCAGCCTCTTCGCCCCGGC 420 consensus_14093#2 ------------------------------------------------------------ consensus_14093#1 ------------------------------------------------------------ consensus_14093#3 ------------------------------------------------------------ consensus_14093#0 CAACTCCTCCTCCTACGCCTCCCTCCCGTGCTCCTCGTCGTGGTGCCCGCTGTTCCAGGG 480 consensus_14093#2 ------------------------------------------------------------ consensus_14093#1 ------------------------------------------------------------ consensus_14093#3 ------------------------------------------------------------ consensus_14093#0 CCAGGCGTGCCCGGCGCCGCAGGGCGGCGGCGACGCGGCGCCGCCGCCGGCGACGCTGCC 540 consensus_14093#2 ------------------------------------------------------------ consensus_14093#1 ------------------------------------------------------------ consensus_14093#3 ------------------------------------------------------------ consensus_14093#0 GACGTGCGCCTTCTCCAAGCCGTTCGCCGACGCGTCGTTCCAGGCGGCGCTCGCCAGCGA 600 consensus_14093#2 ------------------------------------------------------------ consensus_14093#1 ------------------------------------------------------------ consensus_14093#3 ------------------------------------------------------------ consensus_14093#0 CACGCTGAGGCTGGGCAAGGACGCCATCCCGAACTACACGTTCGGGTGCGTGAGCTCGGT 660 consensus_14093#2 ------------------------------------------------------------ consensus_14093#1 ------------------------------------------------------------ consensus_14093#3 ------------------------------------------------------------ consensus_14093#0 GACGGGGCCGACGACGAACATGCCAAGGCAAGGGCTGCTCGGCCTCGGGCGTGGCCCCAT 720 consensus_14093#2 ------------------------------------------------------------ consensus_14093#1 ------------------------------------------------------------ consensus_14093#3 ------------------------------------------------------------ consensus_14093#0 GGCGCTGCTCTCCCAGGCCGGGAGCTTGTACAATGGCGTCTTCTCCTACTGCCTCCCGAG 780 consensus_14093#2 ------------------------------------------------------------ consensus_14093#1 ------------------------------------------------------------ consensus_14093#3 ------------------------------------------------------------ consensus_14093#0 CTACAGGTCATACTACTTCTCCGGCTCGCTCCGGCTGGGCGCCGGCGGCGGGCAGCCGAG 840 consensus_14093#2 ------------------------------------------------------------ consensus_14093#1 ------------------------------------------------------------ consensus_14093#3 ------------------------------------------------------------ consensus_14093#0 GAGCGTCCGGTACACGCCGATGCTGAGGAACCCGCACAGGTCGTCTCTCTACTACGTGAA 900 consensus_14093#2 ------------------------------------------------------------ consensus_14093#1 ------------------------------------------------------------ consensus_14093#3 ------------------------------------------------------------ consensus_14093#0 CGTGACGGGGCTCAGCGTGGGGCACGCGTGGGTGAAGGTCCCCGCGGGATCGTTCGCGTT 960 consensus_14093#2 ------------------------------------------------------------ consensus_14093#1 ------------------------------------------------------------ consensus_14093#3 ------------------------------------------------------------ consensus_14093#0 CGACGCCGCCACCGGCGCCGGCACGGTGGTGGACTCCGGCACGGTGATCACGCGGTGGAC 1020 consensus_14093#2 ------------------------------------------------------------ consensus_14093#1 -----------------------------------------AGNTAGCGGCGCCGAGCGG 19 consensus_14093#3 ------------------------------------------------------------ consensus_14093#0 GGCGCCGGTGTACGCGGCGCTGCGGGAGGAGTTCCGGCGGCAGGTAGCGGCGCCGAGCGG 1080 consensus_14093#2 ------------------------------------------------------------ consensus_14093#1 NTACACGTCGCTGNGCGCGTTCGACACGTGCTTCAACACCGNCNAGNTGGCCGCCGNCGG 79 consensus_14093#3 ------------------------------------------------------------ consensus_14093#0 GTACACGTCGCTGGGCGCGTTCGACACGTGCTTCAACACCGACGAGGTGGCCGCCGGCGG 1140 consensus_14093#2 ------------------------------------------------------------ consensus_14093#1 AGCCCCCGCGGTGACGGTGCACATGGACGGCGGCGTGGACCTGGCGCTNCCGNTGGAGAA 139 consensus_14093#3 ------------------------------------------------------------ consensus_14093#0 AGCCCCCGCGGTGACGGTGCACATGGACGGCGGCGTGGACCTGGCGCTGCCGATGGAGAA 1200 consensus_14093#2 ------------------------------------------------------------ consensus_14093#1 CACGCTCATCCTCAGCAGCGCCACGCCGNTNGCCTGCCTCGCCATGGCCGAGGCGCCGCA 199 consensus_14093#3 ------------------------------------------------------------ consensus_14093#0 CACGCTCATCCACAGCAGCGCCACGCCGCTGGCCTGCCTCGCCATGGCCGAGGCGCCGCA 1260 consensus_14093#2 ------------------------------------------------------------ consensus_14093#1 GAACGTCAACTCCGTCGTCAACGTCATCGCCAACCTGCAGCAGCAGAACATCCGGGTC-T 258 consensus_14093#3 ------------------------------------------------------------ consensus_14093#0 GAACGTCAACTCCGTCGTCAACGTCATCGCCAACCTGCAGCAGCAGAACATCCGGGTCGT 1320 consensus_14093#2 ------------------------------------------------------------ consensus_14093#1 CTTCGACGTCGCCAACTCCCGCGGTACGTTCGCCAAGGAGTCCTGCAACTAATTAAGAAT 318 consensus_14093#3 ------------------------------------------------------------ consensus_14093#0 CTTCGACGTCGCCAACTCCCGCGTCGGCTTCGCCAAGGAGTCCTGCAACTAATTAAGAAT 1380 consensus_14093#2 ------------------------------------------------------------ consensus_14093#1 TAAGATTAATTAAGATGATCTNCCGCTATCTCATCTAGAGCCAAGCTGCT--GCTAGCAA 376 consensus_14093#3 ----------------------------------------------TGCT--GCTAGCAA 12 consensus_14093#0 TAAGATTAATTAAGATGATCTACCGCTATCTCATCTAGAGCCAAGCTGCT--GCTAGCAA 1438 consensus_14093#2 ------------------------------------CAAGCAAGCTAGCTTAGCCAGGAG 24 *** ** ** * consensus_14093#1 A--TGCACGAGAACGGCTTGTGCAGTCTATGTATTCTCTTCTTTTCCCTTTCTGAAATCA 434 consensus_14093#3 A--TGCACGAGAACGGCTTGTGCAGTCTATGTATTCTCTTCTTTTCCCTTTNTGAAATNN 70 consensus_14093#0 A--TGCACGAGAACGGCTTGTGCAGTCTATGTATTCTCTTCTTTTCCCTTTCTGAAATCA 1496 consensus_14093#2 AGCTCCATTGCCATGGNGGCCACCACCACCAT-CCCTCTCCTACTCCTCCTCCTGGCCGC 83 * * ** * ** * * * **** ** *** * consensus_14093#1 CGGTGTCCTC-TTGTGGGCTTNTAGCTTTCCGATCTGTGCAATAAGGTATACGTGACATN 493 consensus_14093#3 CGGTGTCCTC-TTGTGGGNTTNTNGCTTTCCGATCTGTGCNATAAGGTNTNCGTGNTNTC 129 consensus_14093#0 CGGTGTCCTC-TTGTGGGCTTGTAGCTTTCCGATCTGTGCAATAAGGTATACGTGACATC 1555 consensus_14093#2 CACCGTCGNCGCCGACGACGCCGAGCTCTCCG---TGTACCANAACGTGCACCCCTNGTN 140 * *** * * * *** **** *** * * ** ** * * consensus_14093#1 AAAA--CTTGGTCACGGGCGCCTGTNTCATCTGTATGTGCCAATAGGGCTATATCTAGGT 551 consensus_14093#3 AAAA--AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-------------------- 167 consensus_14093#0 AAAA--CTTGGTCACGGGCGCCTGTCTCATCTGTATGTGCCAATAGGGCTATATCTAGGT 1613 consensus_14093#2 GNCGTCCCCGGTCGAGTCCATNATCGGGNTCGNCCGCNACGACGACGNCCGGCTCCTN-- 198 consensus_14093#1 GATTACGTACGTACTCAGGGTTTTACCNGTGTGAATTGGNNTGTTTAAAAAAAAAAAAAA 611 consensus_14093#3 ------------------------------------------------------------ consensus_14093#0 GATTACGTACGTACTCAGGGTTTTACCAGTGTGAATTGGTATGTTTACATCGATCTTAAA 1673 consensus_14093#2 ------------------------------------------------------------ consensus_14093#1 AAAAAAAAAAAAAAAAA--------------------------------- 628 consensus_14093#3 -------------------------------------------------- consensus_14093#0 GATCTTCATCATTTGCATCGCTAGAAAAACTTCATATGAGAATACCAAAT 1723 consensus_14093#2 -------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||