|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14096#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1926 fasta sequence
[TACGAACCCGAGCACCCGAGCCATCCCGACCGGCCGGAGAGCGAGCCCTAG-GGCAG-AGCGGCGGAGGCGGAGGCCGGAGGCGAACGGGAGGCCGGCGAGATGTCGTCGGTGTACGTGCTGGAGCCGCCGACGAAGGGCAAGGTGGTAGTGCAGACGACGGCCGGCCCGCTCGACATCGAGCTGTGGCCGAAGGAGGCCCCCAAGGCGGTGCGCAACTTCGTGCAGCTCTGCCTCGAGGGCTACTACGACGGCAC-GCTCTTCCACCGCGTCATCAAGTCCTTCCTCGTCCAGGGCGGCGACCCCACCGGCTCCGGCACCGGGGGTGAGAGCATATATGGGGCCCCATTTGCAGATGAGTTCCATACGCGCTTGAGGTTTAACCACAGGGGTTTAGTGGCGTGTGCCAATGCCGGCACGCCTCACTCGAATGGGAGTCAATTCTTTATCAGCCTTGACCGTTGTGATTGGCTCGATAAGAAGAATACCATCTTTGGGAAGGTCACTGGCGATTCTATTTTCAACCTTCTAGCCTTGGCTGATATCGAGACTGATAAGGATGATCGACCTGTGTATCCGCAGAAAATTCTTTCAGTTGAGGTACTCTGGAACCCATTTGATGATATTGTTCCAAGGCAACTTAAGAAGACTGAGCCTACTGCCAAGGGTGATATCGAGGGGAAATCAAAGAAGAAAGCCGTTAAGCAACTTAATGTGCTTTCATTTGGAGATGAAGTAGAAGAGGAGGAGAATGAGGCAGCATCCTCTGTGAAGGACAAAATAAAAAGTATTCACGATGTGTTGGATGATCCTCGGTTTCTTAAAGGAGAGGCACCGGATGAGCAACTGACCAAGGAGCAAGAGGACAAAAAAAAGGAGACTGTTCAATCTGTCAGGGAGGCTTTAGTATCAAAAAAATCTGACTTCAGAGAGCTAGAGCATGATTCAGAAACAGATGATTATCCTGACGATGAAAACGAGGAGGATTTTGATAACAGAATGCGCTCTCAAATTCTAAGAAAACGCAGGGAGCTTGGGGACATCCGCTCTAGTGAAACCTCC-AAAAAAACAGATAAAGCACACCGTAAAGACAAGGAGTTACCAGTTCACAGGAGTGACGATGACAATGATGACGACAATGAAGACCACCAGCTAACCAAGTCTAGAAAATTTTCTATGAAGAAAAAAGGCATTGGCTCAGAAGCCAGTGCTGAAAGGATGTCCAAAGGCGATGCTAATTTGCAGCTATTGAATCCAGCTGAGCAAGAGAAGCATTTGCAAAAACAGAAAAGGCGCCGTCTTCAAGGCCGTGAAGATGAGACGTTAGCGAAGCTACAGAAGTTCAAGGGATCGTTTCTCAGTAAGAACCCTGCAACTGGTAACACAGAAAAGAAGACTGATGAAGAGGATTACACAGGGTGGCACAGCAACCGGCTGACTTTTGAACCTGATTCTTCTAAGGATGGAATGACGAGGAAAGATGATCCAGATGACTATGTAGTGGTTGATCCTCTCCTTGAGAAAGGAAAACAAAAATTCAACAAGATGCAAGCAAAGCTTAAGCGGAGAGAACGTGAATGGGCAGGCAGATCTCTGACCTGACCGCATAAGCTGCTTGAGGTGCTTTACTGTTTCCTTCATAAGCGGCCTTCCTGAATTTTTCAGCTTACATTAATTTATCCTTTTTTTGCCTCTCAGAGGTGCACCGTGCAAAAGATTACCTCATATCATAACAGTGCCACTACTGCAGTTTTGATGGTGTTGTAACTGTACACTGCGTTTCGCTATGTTGTGGTTCATGGTAGAGGGACCACCTGTAGACTAGTGCTTTTAACATTAACATTTGTATCATTGTCAATCAAACTGTAAATAACAATTGTTTTAAACTTAGAGGTTCATAATGCCCTTATTAAGTTGCAGTGGTCTTTT]
[+] EMBL AK069484 [TACGAACCCGAGCACCCGAGCCATCCCGACCGGCCGGAGAGCGAGCCCTAG GGCAG AGCGGCGGAGGCGGAGGCCGGAGGCGAACGGGAGGCCGGCGAGATGTCGTCGGTGTACGTGCTGGAGCCGCCGACGAAGGGCAAGGTGGTAGTGCAGACGACGGCCGGCCCGCTCGACATCGAGCTGTGGCCGAAGGAGGCCCCCAAGGCGGTGCGCAACTTCGTGCAGCTCTGCCTCGAGGGCTACTACGACGGCAC GCTCTTCCACCGCGTCATCAAGTCCTTCCTCGTCCAGGGCGGCGACCCCACCGGCTCCGGCACCGGGGGTGAGAGCATATATGGGGCCCCATTTGCAGATGAGTTCCATACGCGCTTGAGGTTTAACCACAGGGGTTTAGTGGCGTGTGCCAATGCCGGCACGCCTCACTCGAATGGGAGTCAATTCTTTATCAGCCTTGACCGTTGTGATTGGCTCGATAAGAAGAATACCATCTTTGGGAAGGTCACTGGCGATTCTATTTTCAACCTTCTAGCCTTGGCTGATATCGAGACTGATAAGGATGATCGACCTGTGTATCCGCAGAAAATTCTTTCAGTTGAGGTACTCTGGAACCCATTTGATGATATTGTTCCAAGGCAACTTAAGAAGACTGAGCCTACTGCCAAGGGTGATATCGAGGGGAAATCAAAGAAGAAAGCCGTTAAGCAACTTAATGTGCTTTCATTTGGAGATGAAGTAGAAGAGGAGGAGAATGAGGCAGCATCCTCTGTGAAGGACAAAATAAAAAGTATTCACGATGTGTTGGATGATCCTCGGTTTCTTAAAGGAGAGGCACCGGATGAGCAACTGACCAAGGAGCAAGAGGACAAAAAAAAGGAGACTGTTCAATCTGTCAGGGAGGCTTTAGTATCAAAAAAATCTGACTTCAGAGAGCTAGAGCATGATTCAGAAACAGATGATTATCCTGACGATGAAAACGAGGAGGATTTTGATAACAGAATGCGCTCTCAAATTCTAAGAAAACGCAGGGAGCTTGGGGACATCCGCTCTAGTGAAACCTCCAAAAAAAACAGATAAAGCACACCGTAAAGACAAGGAGTTACCAGTTCACAGGAGTGACGATGACAATGATGACGACAATGAAGACCACCAGCTAACCAAGTCTAGAAAATTTTCTATGAAGAAAAAAGGCATTGGCTCAGAAGCCAGTGCTGAAAGGATGTCCAAAGGCGATGCTAATTTGCAGCTATTGAATCCAGCTGAGCAAGAGAAGCATTTGCAAAAACAGAAAAGGCGCCGTCTTCAAGGCCGTGAAGATGAGACGTTAGCGAAGCTACAGAAGTTCAAGGGATCGTTTCTCAGTAAGAACCCTGCAACTGGTAACACAGAAAAGAAGACTGATGAAGAGGATTACACAGGGTGGCACAGCAACCGGCTGACTTTTGAACCTGATTCTTCTAAGGATGGAATGACGAGGAAAGATGATCCAGATGACTATGTAGTGGTTGATCCTCTCCTTGAGAAAGGAAAACAAAAATTCAACAAGATGCAAGCAAAGCTTAAGCGGAGAGAACGTGAATGGGCAGGCAGATCTCTGACCTGACCGCATAAGCTGCTTGAGGTGCTTTACTGTTTCCTTCATAAGCGGCCTTCCTGAATTTTTCAGCTTACATTAATTTATCCTTTTTTTGCCTCTCAGAGGTGCACCGTGCAAAAGATTACCTCATATCATAACAGTGCCACTACTGCAGTTTTGATGGTGTTGTAACTGTACACTGCGTTTCGCTATGTTGTGGTTCATGGTAGAGGGACCACCTGTAGACTAGTGCTTTTAACATTAACATTTGTATCATTGTCAATCAAACTGTAAATAACAATTGTTTTAAACTTAGAGGTTCATAATGCCCTTATTAAGTTGCAGTGGTCTTTT]
[+] EMBL CB651585 [ GGCCGGAGAGCGAGCCCTAG GGCAG AGCGGCGGAGGCGGAGGCCGGAGGCGAACGGGAGGCCGGCGAGATGTCGTCGGTGTACGTGCTGGAGCCGCCGACGAAGGGCAAGGTGGTAGTGCAGACGACGGCCGGCCCGCTCGACATCGAGCTGTGGCCGAAGGAGGCCCCCAAGGCGGTGCGCAACTTCGTGCAGCTCTGCCTCGAGGGCTACTACGACGGCAC GCTCTTCCACCGCGTCATCAAGTCCTTCCTCGTCCAGGGCGGCGACCCCACCGGCTCCGGCACCGGGGGTGAGAGCATATATGGGGCCCCATTTGCAGATGAGTTCCATACGCGCTTGAGGTTTAACCACAGGGGTTTAGTGGCGTGTGCCAATGCCGGCACGCCTCACTCGAATGGGAGTCAATTCTTTATCAGCCTTGACCGTTGTGATTGGCTCGATAAGAAGAATACCATCTTTGGGAAGGTCACTGGCGATTCTATTTTCAACCTTCTAGCCTTGGCTGATATCGAGACTGATAAGGATGATCGACCTGTGTATCCGCAGAAAATTCTTTCAGTTGAGGTACTCTGGAACCCATTTGATGATATTGTTCCAAGGCAACTTAAGAAGACTGAGCCTACTGCCAAGGGTGATATCGAGGGGAAATCAAAGAAGAAAGCCGTTAAGCAACTTAATGTGCTTTCATTTGGAGATGAAGTAGAAGAGGAGGAGAATGAGGCAGCATCCTCTGTGAACGACAAAATAAAAAGTATTCACGATGTGTT ]
[+] EMBL CB628452 [ aAGACC AGCGGCGGCGGCGGCGGAGGCGGAGGCCGGAGGCGAACGGGAGGCCGGCGAGATGTCGTCGGTGTACGTGCTGGAGCCGCCGACGAAGGGCAAGGTGGTAGTGCAGACGACGGCCGGCCCGCTCGACATCGAGCTGTGGCCGAAGGAGGCCCCCAAGGCGGTGCGCAACTTCGTGCAGCTCTGCCTCGAGGGCTACTACGACGGCAC GCTCTTCCACCGCGTCATCAAGTCCTTCCTCGTCCAGGGCGGCGACCCCACCGGCTCCGGCACCGGGGGTGAGAGCATATATGGGGCCCCATTTGCAGATGAGTTCCATACGCGCTTGAGGTTTAACCACAGGGGTTTAGTGGCGTGTGCCAATGCCGGCACGCCTCACTCGAATGGGAGTCAATTCTTTATCAGCCTTGACCGTTGTGATTGGCTCGATAAGAAGAATACCATCTTTGGGAAGGTCACTGGCGATTCTATTTTCAACCTTCTAGCCTTGGCTGATATTGAGACTGATAAGGATGATCGACCTGTGTATCCGCAGAAAATTCTTTCAGTTGAGGTACTCTGGAACCCATTTGATGATATTGTTCCAAGGCAACTTAAGAAGACTGAGCCTACTGCCAAGGGTGATATCGAGGGGAAATCAAAGAAGAAAGCCGTTAAGCAACTTAATGTGCTTTCATTTGGAGATGAAGTAGAAGAGGAGGAGAATGAGGCAGCATCCTCTGTGAAGGACAAAATAAAAAGTATTCACAATGTGTTGGATGA ]
[+] EMBL CB659952 [ AG GGCAG AGCGGCGGAGGCGGAGGCCGGAGGCGCACGGGAGGCCGGCGAGATGTCGTCGGTGTACGTGCTGGAGCCGCCGACGAAGGGCAAGGTGGTAGTGCAGACGACGGCCGGCCCGCTCGACATCGAGCTGTGGCCGAAGGAGGCCCCCAAGGCGGTGCGCAACTTCGTGCAGCTCTGCCTCGAGGGCTACTACGACGGCAC GCTCTTCCACCGCGTCATCAAGTCCTTCCTCGTCCA GGCGGCGACCCCACCGGCTCCGGCACCGGGGGTGAGAGCATATATGGGGCCCCATTTGCAGATGAGTTCCATACGCGCTTGAGGTTTAACCACAGGGGTTTAGTGGCGTGTGCCAATGCCGGCACGCCTCACTCGAATGGGAGTCAATTCTTTATCAGCCTTGACCGTTGTGATTGGCTCGATAAGAAGAATACCATCTTTGGGAAGGTCACTGGCGATTCTATTTTCAACCTTCTAGCCTTGGCTGATATCGAGACTGATAAGGATGATCGACCTGTGTATCCGCAGAAAATTCTTTCAGTTGAGGTACTCTGGAACCCATTTGATGATATTGTTCCAAGGCAACTTAAGAAGACTGAGCCTACTGCCAAGGGTGATATCGAGGGGAAATCAAAGAAGAAAGCCGTTAAGCAACTTAATGTGCTTTCATTTGGAGATGAAGTAGAAGAGGAGGAGAATGAGGCAGCATCCTCTGTGAAGGACAAAATAAAAAGTATTCACGATGTGTTGGATGATCCTCGGTTTCTTAAAGGAGAGGCACCGGATGAGCAACTGACCAAGGAGCAAGAGGACANAAAAAAGGAGACT ]
[+] EMBL CB659990 [ GGGCTACTACTACTGCAC GCTCTTCCACCGCGTCATCGAGTCCTTCCTCGTCCA GGCGGCGACCCCACCGGCTCCGGCACCGGGGGTGAGAGCATATATGGGGCCCCATTTGCAGATGAGTTCCATACGCTCTTGATGTTTAACCACAGGGGTTTAGTGGCGTGTGCCAATGCCGGCACGCCTCACTCGAATGGGAGTCAATTCTTTATCAGCCTTGACCGTTGTGATTGGCTCGATAAGAACAATACCATCTTTGGGAAGGTCACTGGCGATTCTATTTTCAACCTTCTATCCTTGGCTGATATCCAGACTGATAAGGATGATCGACCTGTGTATCCGCATAAAATTCTTTCACTTGAGGTACTCTGGAACCCATTTGATGATATTGTTC ]
[+] EMBL CB662355 [ GACCGCACTGCTCTTCCACCGCGTCATCAAGTCCTTCCTCGTCCAGGGTGGCGACCCCACCGGCTCCGGCACCGGGGGTGAGAGCATATATGGGGCCCCATTTGCAGATGAGTTCCATACGCGCTTGAGGTTTAACCACAGGGGTTTAGTGGCGTGTGCCAATGCCGGCACGCCTCACTCGAATGGGAGTCAATTCTTTATCAGCCTTGACCGTTGTGATTGGCTCGATAAGAAGAATACCATCTTTGGGAAGGTCACTGGCGATTCTATTTTCAACCTTCTAGCCTTGGCTGATATCGAGACTGATAAGGATGATCGACCTGTGTATCCGCAGAAAATTCTTTCAGTTGAGGTACTCTGGAACCCATTTGATGATATTGTTCCAAGGCAACTTAAGAAGACTGAGCCTACTGCCAAGGGTGATATCGAGGGGAAATCAAAGAAGAAAGCCGTTAAGCAACTTAATGTGCTTTCATTTGGAGATGAAGTAGAAGAGGAGGAGAATGAGGCAGCATCCTCTGTGAAGGACAAAATAAAAAGTATTCACGATGTGTTGGATGATCCTCGGTTTCTTAAAGGAGAGGCACCGGATGAGCAACTGACCAAGGAGCAAGAGGACAAAAAAAAGGAGACTGTTCAATCTGTCAGGGAGGCTTTAGTATCAAAAAAATCTGACTTCAGAGAGCTAGAGCATGATTCAGAAACAGATGATTATCCTGACGATGAAAACGAGGAGGATTTTGATAACAGAATGCGCTCTCAAATTCTAAGAAAACGCAGGGAGCTTGGGGACATCCGCTCTAGTGAAACCTCC AAAAAAACAGATAA ]
[+] EMBL CB662356 [ GACGGTTC GCTCTTCCACCGCGTCATCAAGTCCTTCCTCGTCCAGGGCGGCGACCCCACCGGCTCCGGCACCGGGGGTGAGAGCATATATGGGGCCCCATTTGCAGATGAGTTCCATACGCGCTTGAGGTTTAACCACAGGGGTTTAGTGGCGTGTGCCAATGCCGGCACGCCTCACTCGAATGGGAGTCAATTCTTTATCAGCCTTGACCGTTGTGATTGGCTCGATAAGAAGAATACCATCTTTGGGAAGGTCACTGGCGATTCTATTTTCAACCTTCTAGCCTTGGCTGATATCGAGACTGATAAGGATGATCGACCTGTGTATCCGCAGAAAATTCTTTCAGTTGAGGTACTCTGGAACCCATTTGATGATATTGTTCCAAGGCAACTTAAGAAGACTGAGCCTACTGCCAAGGGTGATATCGAGGGGAAATCAAAGAAGAAAGCCGTTAAGCAACTTAATGTGCTTTCATTTGGAGATGAAGTAGAAGAGGAGGAGAATGAGGCAGCATCCTCTGTGAAGGACAAAATAAAAAGTATTCACGATGTGTTGGATGATCCTCGGTTTCTTAAAGGAGAGGCACCGGATGAGCAACTGACCAAGGAGCAAGAGGACAAAAAAAAGGAGACTGTTCAATCTGTCAGGGAGGCTTTAGTATCAAAAAAATCTGACTTCAGAGAGCTAGAGCATGATTCAGAAACAGATGATTATCCTGACGATGAAAACGAGGAGGATTTTGATAACAGAATGCGCTCTCAAATTCTAAGAAAACGCAGGGAGCTTGGGGACATCCGCTCTAGTGAAACCTCC AAAAAAACAGATAAAGCACACCGTAAAGACAAGGAGTTACCAGTTCAC ]
[+] EMBL AU182026 [ AAGGATGGAATGCCGAGGAAAGATGATCCAGATGACTATGTAGTGGTTGATCCTCTCCTTGAGAAAGGAAAACAAAAATTCAACAAGATGCAAGCAAAGCTTAAGCGGAGAGAACGTGAATGGGCAGGCAGATCTNTGACCTGACCGCATAAGCTGCTTGAGGTGCTTTACTGTTTCCTTCATAAGCGGCCTTCCTGAATTTTTCAGCTTACATTAATTTATCCTTTTTTTGCCTCTCAGAGGTGCNCCGTGCAAAAGATTACCTCATATCATAACAGTGCCACTACTGCAGTTTTGATGGTGTTGTAACTGTACACTGCGTTTCGCTATGTTGTGGTTCATGGTAGAGGGACCACCTGTAGACTAGTGCTTTTAACATTAACATTTGTATCATTGTCAATCAAACTGTAAATAACAATTGTTTTAAAaa ]
consensusID : consensus_14096#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 967 fasta sequence
[GCGCTCTCAAA-TCTAAGAAAACGCAGGGAGCTTGGGGACATCCGCTCTAGTGAAACCTCCAAAAAAACAGATAAAGCACACCGTAAAGACAAGGAGTTACCAGTTCACAGGAGTGACGATGACAATGATGACGACAATGAAGACCACCAGCTAACCAAGTCTAGAAAATTTTCTATGAAGAAAAAAGGCATTGGCTCAGAAGCCAGTGCTGAAAGGATGTCCAAAGGCGATGCTAATTTGCAGCTATTGAATCCAGCTGAGCAAGAGAAGCATTTGCAAAAACAGAAAAGGCGCCGTCTTCAAGGCCGTGAAGATGAGACGTTAGCGAAGCTACAGAAGTTCAAGGCATCGTTTCTCAGTAAGAACCCTGCAACTGGTAACACAGAAAAGAAGACTGATGAAGAGGATTACACAGGGTGGCACAGCAACCGGCTGACTTTTGAACCTGATTCTTCTAAGGATGGAATGACGAGGAAAGATGATCCAGATGACTATGTAGTGGTTGAT-CCTCTCCTTGAGAAAGGAAAACAAAAATTCAACAAGATGCAAGCAAAGCTTAAGCGGAGAGAACGTGAATGGGCAGGCAGATCTCTGACCTGA-CCGCATAAGCTGCTTGAGAGGTGCACCGTGCAAAAGATTACCTCATATCATAACAGTGCCACTACTGCAGTTTTGATGGTGTTGTAACTGTACACTGCGTTTCGCTATGTTGTGGTTCATGGTAGAGGGACCACCTGTAGACTAGTGCTTTTAACATTAACATTTGTATCATTGTCAATCAAACTGTAAATAACAATTGTTTTAAACTTAGAGGTTCATAATGCCCTTATTAAGTTGCAGTGGTTTTTTTTTTTAATGGAATTTCTTTTGTGGTATCATGTGATAGCAGGACAGATTATTTATATAACCGCATAAATTGATCCGACTCTTATCTTGGAACAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CB659989 [GCGCTCTCAAA TCTAAGAAAACGCAGGGAGCTTGGGGACATCCGCTCTAGTGAAACCTCCAAAAAAACAGATAAAGCACACCGTAAAGACAAGGAGTTACCAGTTCACAGGAGTGACGATGACAATGATGACGACAATGAAGACCACCAGCTAACCAAGTCTAGAAAATTTTCTATGAAGAAAAAAGGCATTGGCTCAGAAGCCAGTGCTGAAAGGATGTCCAAAGGCGATGCTAATTTGCAGCTATTGAATCCAGCTGAGCAAGAGAAGCATTTGCAAAAACAGAAAAGGCGCCGTCTTCAAGGCCGTGAAGATGAGACGTTAGCGAAGCTACAGAAGTTCAAGGCATCGTTTCTCAGTAAGAACCCTGCAACTGGTAACACAGAAAAGAAGACTGATGAAGAGGATTACACAGGGTGGCACAGCAACCGGCTGACTTTTGAACCTGATTCTTCTAAGGATGGAATGACGAGGAAAGATGATCCAGATGACTATGTAGTGGTTGAT CCTCTCCTTGAGAAAGGAAAACAAAAATTCAACAAGATGCAAGCAAAGCTTAAGCGGAGAGAACGTGAATGGGCAGGCAGATCTCTGACCTGA CCGCATAAGCTGCTTGAGAGGTGCACCGTGCAAAAGATTACCTCATATCATAACAGTGCCACTACTGCAGTTTTGATGGTGTTGTAACTGTACACTGCGTTTCGCTATGTTGTGGTTCATGGTAGAGGGACCACCTGTAGACTAGTGCTTTTAACATTAACATTTGTATCATTGTCAATCAAACTGTAAATAACAATTGTTTTAAACTTAGAGGTTCATAATGCCCTTAT ]
[-] EMBL CB659953 [GCGCTCTCAAATTCTAAGAAAACGCAGGGAGCTTGGGGACATCCGCTCTAGTGAAACCTCCAAAAAAACAGATAAAGCACACCGTAAAGACAAGGAGTTACCAGTTCACAGGAGTGACGATGACAATGATGACGACAATGAAGACCACCAGCTAACCAAGTCTAGAAAATTTTCTATGAAGAAAAAAGGCATTGGCTCAGAAGCCAGTGCTGAAAGGATGTCCAAAGGCGATGCTAATTTGCAGCTATTGAATCCAGCTGAGCAAGAGAAGCATTTGCAAAAACAGAAAAGGCGCCGTCTTCAAGGCCGTGAAGATGAGACGTTAGCGAAGCTACAGAAGTTCAAGGCATCGTTTCTCAGTAAGAACCCTGCAACTGGTAACACAGAAAAGAAGACTGATGAAGAGGATTACACAGGGTGGCACAGCAACCGGCTGACTTTTGAACCTGATTCTTCTAAGGATGGAATGACGAGGAAAGATGATCCAGATGACTATGTAGTGGTTGAT CCTCTCCTTGAGAAAGGAAAACAAAAATTCAACAAGATGCAAGCAAAGCTTAAGCGGAGAGAACGTGAATGGGCAGGCAGATCTCTGACCTGA CCGCATAAGCTGCTTGAGAGGTGCACCGTGCAAAAGATTACCTCATATCATAACAGTGCCACTACTGCAGTTTTGATGGTGTTGTAACTGTACACTGCGTTTCGCTATGTTGTGGTTCATGGTAGAGGGACCACCTGTAGACTAGTGCTTTTAACATTAACATTGGTATCATTGTCAATCAAACTGTAAATAACAATTG TTAAGACTTAGAGGTTCATAA ]
[+] EMBL C28953 [ AGAAAACGCAGGGAGCTTGGGGACATCCGCTCTAGTGAAACCTCCAAAAAAACAGATAAAGCACACCGTAAAGACAAGGAGTTACCAGTTCACAGGAGTGACGATGACAATNATGACGACAATGAAGACCACCAGCTAACCAAGTNTAGAAANTTTNTTATGAAGAAAAAAGGCATTGGCTCAGAAGCCAGTNCTGAAAGGTTGTCCAAAGGCGATGCTAATTTNCAGCTATTGATTCCAGCTGAGCAAG ]
[-] EMBL CB628453 [ TGGCTCAGAAGCCAGTGCTGAAAGGATGTCCAAAGGCGATGCTAATTTGCAGGTATTGAATCCAGCTGAGCAAGAGAAGCATTTGCAAAAACAGAAAAGGCGCCGTCTTCAAGGCCGTGAAGATGAGACGTTAGCGAAGTTACAGAAGTTCAAGGCATCGTTTCTCAGTAAGAACCCTGCAACTGGTAACACAGAAAAGAAGAGTGATGAAGAGGATTACACAGGGTGGCACAGCAACCGGTTGACTTTTGAACTTGATTCTTCTAAGGATGGAATGGCGAGGAAAGATGATCCAGATGACTATGTAGTGGTTGAT CCTCTCCTTGAGAAAGGAAAACAAAAATTCAACAAGATGCAAGCAAAGCTTAAGCGGAGAGAACGTGAATGGGCAGGCAGATCTCTGACCTGA CCGCATAAGCTGCTTGAGAGGTGCACCGTGCAAAAGATTACCTCATATCATAACAGTGCCACTACTGCAGTTTTGATGGTGTTGTAACTGTGCATTGCGTTTCGGTATGTTGTGGTTCATGGTAGAGGGACCCCCTGTAGACTAGTGCTTTTAACATTAACATTTGTATCATTGTCAATCAAACTGTAAATAACAATTGTTTTAAACTTAGAGGTTCATAATGCCCTTATTAAGTTGCAGTGGTTTTTTTTTTTAATGGAATTTCTTTTGTGGTATCATGTGATAGCAGGACAGATTATTTATATAACCGCATAAATTG ]
[+] EMBL CB683079 [ GAAGCCTGATGAAGAGGATTACACAGGGTGGCACAGCAACCGGCTGACTTTTGAACCTGATTCTTCTAAGGATGGAATGACGAGGAAAGATGATCCAGATGACTATGTAGTGGTTGAT CCTCTCCTTGAGAAAGGAAAACAAAAATTCAACAAGATGCAAGCAAAGCTTAAGCGGAGAGAACGTGAATGGGCAGGCAGATCTCTGACCTGA CCGCATAAGCTGCTTGAGAGGTGCACCGTGCAAAAGATTACCTCATATCATAACAGTGCCACTACTGCAGTTTTGATGGTGTTGTAACTGTACACTGCGTTTCGCTATGTTGTGGTTCATGGTAGAGGGACCACCTGTAGACTAGTGCTTTTAACATTAACATTTGTATCATTGTCAATCAAACTGTAAATAACAATTGTTTTAAACTTAGAGGTTCATAATGCCCTTATTAAGTTGCAGTGG ]
[+] EMBL AU056495 [ TGAAGAGGATTACACAGGGTGGCACAGCAACCGGCTGACTTTTGAACCTGATTCTTCTAAGGATGGAATGACGNGGAAAGATGATCCAGATGACTATGTAGTGGTTGATCCCTCTCCTTGAGAAAGGAANACAAAAATTCAACNAGATGCAAGCAAAGCTTAAGCGGAGAGAACGTGAATGGGCAGGCAGATCTCTGACCTGACCCGCATAAGCTGCTTGAGAGGTGCACCGTGCAAAAGATTACCTCATATCATAACAGTGCCACTACTGCAGTTTTGATGGTGTTGTAACTGTCCACTGCGTTTCGCTATGTTGTGGTTCATGGTAGAGGGACCNCCTGTAGACTAGTGCTTTTAACATTAACATTTGTATCATTGTCAATCAAACTGTAAATAACAATTGTTTTAAACTTAGAGGTTCATAATGCCCTTATTAAGTTGCAGTGGTCTTTTTTTTTATTGGAATTTCTTTTGTGGTATCATGTGCTA CAGGACAGATTATTTATATAACCGCATAAATTGATCCGACTCTTATCTTGGAACAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_14096#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence
[NCNGGNACGCGTGGGCGGACGCGTGGGCCCTAGGGCAGAGCGGCGGAGGCGGAGGCCGGAGCGAAGCGGGAGGCCGGCGAGATGTCGTCGGTGTACGTGCTGGAGCCGCCGACGAAGGGCAAGGTGGTAGTGCAGACGACGGCCGGCCCGCTCGACATCGAGCTGTGGCCGAAGAGGCCCCCAAGGCGGTGCGCAACTTCGTGCAGCTCTGCCTCGAGGGCTACTACGACGGCACGCTCTTCCACCGCGTCATCAAGTCCTTCCTCGTCCAGGGCGGCGACCCCACCGGCTCCGGCACCGGGGGTGAGAGCATATATGGGGCCCCATTTGCAGATGAGTTCCATACGCGCTTGAGGTTTAACCACAGGGGTTTAGTGGCGTGTGCCAATGCCGGCACGCCTCACTCGAATGGGGAGTCAATTCTTTATCAGCCTTGACCGTTGTGATTGGCTCGATAAGAAGAATACCATCTTTGGGAAGGTCACTGGCGATTCTATTTTCAACCTTCTAGCCTTTGGCTGATATCGAGACTGATAAGGGATGATCGACCTGTGTAATCCGCAAGAAAAATTCTTTCAGTTTAGGTACTCTGGAACCCCATTTTGATGAATATTGTTCCAAGGCAAACTTAAN]
[+] EMBL AU162691 [NCNGGNACGCGTGGGCGGACGCGTGGGCCCTAGGGCAGAGCGGCGGAGGCGGAGGCCGGAGCGAAGCGGGAGGCCGGCGAGATGTCGTCGGTGTACGTGCTGGAGCCGCCGACGAAGGGCAAGGTGGTAGTGCAGACGACGGCCGGCCCGCTCGACATCGAGCTGTGGCCGAAGAGGCCCCCAAGGCGGTGCGCAACTTCGTGCAGCTCTGCCTCGAGGGCTACTACGACGGCACGCTCTTCCACCGCGTCATCAAGTCCTTCCTCGTCCAGGGCGGCGACCCCACCGGCTCCGGCACCGGGGGTGAGAGCATATATGGGGCCCCATTTGCAGATGAGTTCCATACGCGCTTGAGGTTTAACCACAGGGGTTTAGTGGCGTGTGCCAATGCCGGCACGCCTCACTCGAATGGGGAGTCAATTCTTTATCAGCCTTGACCGTTGTGATTGGCTCGATAAGAAGAATACCATCTTTGGGAAGGTCACTGGCGATTCTATTTTCAACCTTCTAGCCTTTGGCTGATATCGAGACTGATAAGGGATGATCGACCTGTGTAATCCGCAAGAAAAATTCTTTCAGTTTAGGTACTCTGGAACCCCATTTTGATGAATATTGTTCCAAGGCAAACTTAAN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14096#0 ------------------------------------------------------------
consensus_14096#2 ------------------------------------------------------------
consensus_14096#1 GCGCTCTCAAATCTAAGAAAACGCAGGGAGCTTGGGGACATCCGCTCTAGTGAAACCTCC 60
consensus_14096#0 ------------------------------------------------------------
consensus_14096#2 ------------------------------------------------------------
consensus_14096#1 AAAAAAACAGATAAAGCACACCGTAAAGACAAGGAGTTACCAGTTCACAGGAGTGACGAT 120
consensus_14096#0 ------TACGAACCCGAGCACCCGAGCCATCCCGACCGGCCGGA-GAGCGAGCCCTAGGG 53
consensus_14096#2 -------------------------NCNGGNACGCGTGGGCGGACGCGTGGGCCCTAGGG 35
consensus_14096#1 GACAATGATGACGACAATGAAGACCACCAGCTAACCAAGTCTAGAAAATTTTCTATGAAG 180
* * * * * *
consensus_14096#0 CAGAGCGGCGGAGGC--GGAGGCCGGAGGCGAACGGGAGGCCGGCGA-GATGTCGTCGGT 110
consensus_14096#2 CAGAGCGGCGGAGGC--GGAGGCCGGAGCGAAGCGGGAGGCCGGCGA-GATGTCGTCGGT 92
consensus_14096#1 AAAAAAGGCATTGGCTCAGAAGCCAGTGCTGAAAGGATGTCCAAAGGCGATGCTAATT-T 239
* * *** *** ** *** * * * ** * ** * **** *
consensus_14096#0 GTACGTGCTGGAGCC-GCCGACGAAGGGCAAGGT--GGTAGTGCAGACGACG-GCCGGCC 166
consensus_14096#2 GTACGTGCTGGAGCC-GCCGACGAAGGGCAAGGT--GGTAGTGCAGACGACG-GCCGGCC 148
consensus_14096#1 GCAGCTATTGAATCCAGCTGAGCAAGAGAAGCATTTGCAAAAACAGAAAAGGCGCCGTCT 299
* * * ** * ** ** ** *** * * * * * **** * * **** *
consensus_14096#0 CGCTCGACATCGAGCTGTGGCCGAAGG-AGGCCCCCAAGGCGGTGCGCAACTTCGTGCAG 225
consensus_14096#2 CGCTCGACATCGAGCTGTGGCCGAAG--AGGCCCCCAAGGCGGTGCGCAACTTCGTGCAG 206
consensus_14096#1 TCAAGGCCGTGAAGATGAGACGTTAGCGAAGCTACAGAAGTTCAAGGCATCGTTTCTCAG 359
* * * ** ** * * ** * ** * * * *** * * ***
consensus_14096#0 CTCTGCCTCGAGGGCTACTACGACGGCACG-----CTCTTCCACCGCGTCATCAAGTCCT 280
consensus_14096#2 CTCTGCCTCGAGGGCTACTACGACGGCACG-----CTCTTCCACCGCGTCATCAAGTCCT 261
consensus_14096#1 TAAGAACCCTGCAACTGGTAACACAGAAAAGAAGACTGATGAAGAGGATTACACAGGGTG 419
* * ** ** ** * * ** * * * * * **
consensus_14096#0 TCCTCGTC-CAGGGCGGCGACCCCACC-GGCTCCGGCACCGGGGGTGAGAGCATATATGG 338
consensus_14096#2 TCCTCGTC-CAGGGCGGCGACCCCACC-GGCTCCGGCACCGGGGGTGAGAGCATATATGG 319
consensus_14096#1 GCACAGCAACCGGCTGACTTTTGAACCTGATTCTTCTAAGGATGGAATGACGAGGAAAGA 479
* * * ** * * *** * ** * * ** ** * * *
consensus_14096#0 GGCCCCATTTGCAGATG-AGT--TCCATACGCGC-TTGAGGTTTAACCACAGGGGTTTAG 394
consensus_14096#2 GGCCCCATTTGCAGATG-AGT--TCCATACGCGC-TTGAGGTTTAACCACAGGGGTTTAG 375
consensus_14096#1 TGATCCAGATGACTATGTAGTGGTTGATCCTCTCCTTGAGAAAGGAAAACAAAAATTCAA 539
* *** ** *** *** * ** * * * ***** * *** ** *
consensus_14096#0 TGGCGTGTGC-CAATGCC--GGCACGCCTCACTCGAATGGG-AGTCAATTCTTTATCA-- 448
consensus_14096#2 TGGCGTGTGC-CAATGCC--GGCACGCCTCACTCGAATGGGGAGTCAATTCTTTATCA-- 430
consensus_14096#1 CAAGATGCAAGCAAAGCTTAAGCGGAGAGAACGTGAATGGGCAGGCAGATCTCTGACCTG 599
** *** ** ** ** ******* ** ** *** * *
consensus_14096#0 ---GCCTTGACCG-TTGTGATTGGCTCGATA-AGAAGAATACC--ATCTT-TGGGAAGGT 500
consensus_14096#2 ---GCCTTGACCG-TTGTGATTGGCTCGATA-AGAAGAATACC--ATCTT-TGGGAAGGT 482
consensus_14096#1 ACCGCATAAGCTGCTTGAGAGGTGCACCGTGCAAAAGATTACCTCATATCATAACAGTGC 659
** * * * *** ** ** * * * **** **** ** * * * *
consensus_14096#0 CACTG--GCGATTCTATT-----TTCAACCTTCTA--GCCTT-GGCTGATATCGAGACTG 550
consensus_14096#2 CACTG--GCGATTCTATT-----TTCAACCTTCTA--GCCTTTGGCTGATATCGAGACTG 533
consensus_14096#1 CACTACTGCAGTTTTGATGGTGTTGTAACTGTACACTGCGTTTCGCT-ATGTTGTGGTTC 718
**** ** ** * * * *** * * ** ** *** ** * * * *
consensus_14096#0 ATAAGG-ATGATCGACCTGTGTA-TCCGCAG--AAAATTCTTTCAGTTGAGGTACTCTGG 606
consensus_14096#2 ATAAGGGATGATCGACCTGTGTAATCCGCAAGAAAAATTCTTTCAGTTTAGGTACTCTGG 593
consensus_14096#1 ATGGTAGAGGGACCACCTGTAGA-CTAGTGCTTTTAACATTAACATTTGTATCATTGTCA 777
** * * * ****** * * ** * ** ** * * *
consensus_14096#0 AACCCA--TTTGATGA-TATTGTTCCAAGGC--AA-CTTAAGAAGACTGAGCCTACTGCC 660
consensus_14096#2 AACCCCATTTTGATGAATATTGTTCCAAGGC--AAACTTAAN------------------ 633
consensus_14096#1 ATCAAACTGTAAATAACAATTGTTTTAAACTTAGAGGTTCATAATGCCCTTATTAAGTTG 837
* * * ** * ****** ** * ** *
consensus_14096#0 AAGGGTGATATCGAGGGGAAATCAAAGAAGAAAGCCGTTAAGCAACTTAATGTGCTTTCA 720
consensus_14096#2 ------------------------------------------------------------
consensus_14096#1 CAGTGGTTTTTTTTTTTAATGGAATTTCTTTTGTGGTATCATGTGATAGCAGGACAGATT 897
consensus_14096#0 TTTGGAGATGAAGTAGAAGAGGAGGAGAATGAGGCAGCATCCTCTGTGAAGGACAAAATA 780
consensus_14096#2 ------------------------------------------------------------
consensus_14096#1 ATTTATATAACCGCATAAATTGATCCGACTCTTATCTTGGAACAAAAAAAAAAAAAAAAA 957
consensus_14096#0 AAAAGTATTCACGATGTGTTGGATGATCCTCGGTTTCTTAAAGGAGAGGCACCGGATGAG 840
consensus_14096#2 ------------------------------------------------------------
consensus_14096#1 AAAAAAAAAA-------------------------------------------------- 967
consensus_14096#0 CAACTGACCAAGGAGCAAGAGGACAAAAAAAAGGAGACTGTTCAATCTGTCAGGGAGGCT 900
consensus_14096#2 ------------------------------------------------------------
consensus_14096#1 ------------------------------------------------------------
consensus_14096#0 TTAGTATCAAAAAAATCTGACTTCAGAGAGCTAGAGCATGATTCAGAAACAGATGATTAT 960
consensus_14096#2 ------------------------------------------------------------
consensus_14096#1 ------------------------------------------------------------
consensus_14096#0 CCTGACGATGAAAACGAGGAGGATTTTGATAACAGAATGCGCTCTCAAATTCTAAGAAAA 1020
consensus_14096#2 ------------------------------------------------------------
consensus_14096#1 ------------------------------------------------------------
consensus_14096#0 CGCAGGGAGCTTGGGGACATCCGCTCTAGTGAAACCTCCAAAAAAACAGATAAAGCACAC 1080
consensus_14096#2 ------------------------------------------------------------
consensus_14096#1 ------------------------------------------------------------
consensus_14096#0 CGTAAAGACAAGGAGTTACCAGTTCACAGGAGTGACGATGACAATGATGACGACAATGAA 1140
consensus_14096#2 ------------------------------------------------------------
consensus_14096#1 ------------------------------------------------------------
consensus_14096#0 GACCACCAGCTAACCAAGTCTAGAAAATTTTCTATGAAGAAAAAAGGCATTGGCTCAGAA 1200
consensus_14096#2 ------------------------------------------------------------
consensus_14096#1 ------------------------------------------------------------
consensus_14096#0 GCCAGTGCTGAAAGGATGTCCAAAGGCGATGCTAATTTGCAGCTATTGAATCCAGCTGAG 1260
consensus_14096#2 ------------------------------------------------------------
consensus_14096#1 ------------------------------------------------------------
consensus_14096#0 CAAGAGAAGCATTTGCAAAAACAGAAAAGGCGCCGTCTTCAAGGCCGTGAAGATGAGACG 1320
consensus_14096#2 ------------------------------------------------------------
consensus_14096#1 ------------------------------------------------------------
consensus_14096#0 TTAGCGAAGCTACAGAAGTTCAAGGGATCGTTTCTCAGTAAGAACCCTGCAACTGGTAAC 1380
consensus_14096#2 ------------------------------------------------------------
consensus_14096#1 ------------------------------------------------------------
consensus_14096#0 ACAGAAAAGAAGACTGATGAAGAGGATTACACAGGGTGGCACAGCAACCGGCTGACTTTT 1440
consensus_14096#2 ------------------------------------------------------------
consensus_14096#1 ------------------------------------------------------------
consensus_14096#0 GAACCTGATTCTTCTAAGGATGGAATGACGAGGAAAGATGATCCAGATGACTATGTAGTG 1500
consensus_14096#2 ------------------------------------------------------------
consensus_14096#1 ------------------------------------------------------------
consensus_14096#0 GTTGATCCTCTCCTTGAGAAAGGAAAACAAAAATTCAACAAGATGCAAGCAAAGCTTAAG 1560
consensus_14096#2 ------------------------------------------------------------
consensus_14096#1 ------------------------------------------------------------
consensus_14096#0 CGGAGAGAACGTGAATGGGCAGGCAGATCTCTGACCTGACCGCATAAGCTGCTTGAGGTG 1620
consensus_14096#2 ------------------------------------------------------------
consensus_14096#1 ------------------------------------------------------------
consensus_14096#0 CTTTACTGTTTCCTTCATAAGCGGCCTTCCTGAATTTTTCAGCTTACATTAATTTATCCT 1680
consensus_14096#2 ------------------------------------------------------------
consensus_14096#1 ------------------------------------------------------------
consensus_14096#0 TTTTTTGCCTCTCAGAGGTGCACCGTGCAAAAGATTACCTCATATCATAACAGTGCCACT 1740
consensus_14096#2 ------------------------------------------------------------
consensus_14096#1 ------------------------------------------------------------
consensus_14096#0 ACTGCAGTTTTGATGGTGTTGTAACTGTACACTGCGTTTCGCTATGTTGTGGTTCATGGT 1800
consensus_14096#2 ------------------------------------------------------------
consensus_14096#1 ------------------------------------------------------------
consensus_14096#0 AGAGGGACCACCTGTAGACTAGTGCTTTTAACATTAACATTTGTATCATTGTCAATCAAA 1860
consensus_14096#2 ------------------------------------------------------------
consensus_14096#1 ------------------------------------------------------------
consensus_14096#0 CTGTAAATAACAATTGTTTTAAACTTAGAGGTTCATAATGCCCTTATTAAGTTGCAGTGG 1920
consensus_14096#2 ------------------------------------------------------------
consensus_14096#1 ------------------------------------------------------------
consensus_14096#0 TCTTTT 1926
consensus_14096#2 ------
consensus_14096#1 ------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||