These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14101#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1348 fasta sequence [CCTCACTCCATCCACCGCACCACCACCACTACCCTGCACCTCGATCAATTGAACGCGAGCAAGGAAAGAGAGAGAGCGAGAAAGAGAGCGGCAATGGCGACGTCGCACGCGGACGTGGAGAAGGGGGCGAGGAGGAAGGAGGTGGGGAAGGTGCCGTCGCCGCTGTACCCGCAGCACGAGGGGGAGAGGGAGTGGGTGCCGTGGATCGTCCCGTCGTTCCTCGTCGCCAACATCGTCGTCTTCGTCCTCACCATGTACGCCAACAACTGCCCCCTCCACACCCCGCCTCGCAGCGGCAAGTGCATCGCCCGCTTCCTCGGCCGCTTCTCCTTCCAGCCTCTCCACGAGAACCCGCTCCTCGGCCCCTCCTCCGCCACGCTACAGAAGATGGGAGCACTTGTGTGGGACAAGGTCGTGCACGAGCACCAGGGCTATCGCCTCATCACCTCCATCTGGCTGCATGCCGGTGTTCTGCACCTGGTCGCCAACATGCTCAGCCTCATCTTCATCGGCCTGCGCCTTGAGCAGCAGTTCGGATACGTACGAATTGGAGCGATCTACCTCCTGTCTGGCCTGGGCGGCAGCGTCCTGTCCTCTCTGTTCATCAGAAACCACATCTCGGTTGGTGCTTCAGGTGCTCTCTTTGGACTCCTCGGAGCCATGCTCTCGGAGCTTCTCACCAACTGGACCATTTACACCAACAAGGTCGCGGCCGTGATCACCCTCCTGTTCGTGATCGCGGTGAACCTGGCGCTCGGCATCCTCCCACACGTGAATAACTTCGCGCACATCGGCGGGTTCCTGACGGGTTTCCTGCTCGGATTCGTGCTGCTGATGCGGCCGCATTTCGGCTGGATGGAGCGCTACAGCCTCCCCTCCGGCAGCCCGTGCAGCTCCAAGAAGTACCTCGTCTACCAGTGGATCCTGCTTGCCATCGCCACTGCCCTCGTCATTGTCGGATTCGCGGTTGGTATGACCATGCTCTTCCGCGGGGAGAACGCCAACGACAGCTGCCACTGGTGTCACTACCTCAGCTGTGTACCAACCTCCAGATGGACCTGCTCGAACTGAGAAATACAAGGAGGCCATGAACAAATTTTCTCTGTACTTTTTTTCTTTTTGCGTAATCCTGTATGATGCTGCAAACACATATTCTGTTTATCTGTAGATAGATTAAAGAAGGATTCTTGATCGATCGATCTCATACTGTAGGCAGGCTCGTCGGGGTCTTCCACTCTTCCTATCTCTTGTACAATTGATTCATTCTTTGTATTGCAATTATTGAGGCTTGGAATCTCTTCTGTCCCTGCATCACTTCTTCCAAATTAAAACATATCTTTGAACCTGT] [+] EMBL AK102725 [CCTCACTCCATCCACCGCACCACCACCACTACCCTGCACCTCGATCAATTGAACGCGAGCAAGGAAAGAGAGAGAGCGAGAAAGAGAGCGGCAATGGCGACGTCGCACGCGGACGTGGAGAAGGGGGCGAGGAGGAAGGAGGTGGGGAAGGTGCCGTCGCCGCTGTACCCGCAGCACGAGGGGGAGAGGGAGTGGGTGCCGTGGATCGTCCCGTCG TCCTCGTCGCCAACATCGTCGTCTTCGTCCTCACCATGTACGCCAACAACTGCCCCCTCCACACCCCGCCTCGCAGCGGCAAGTGCATCGCCCGCTTCCTCGGCCGCTTCTCCTTCCAGCCTCTCCACGAGAACCCGCTCCTCGGCCCCTCCTCCGCCACGCTACAGAAGATGGGAGCACTTGTGTGGGACAAGGTCGTGCACGAGCACCAGGGCTATCGCCTCATCACCTCCATCTGGCTGCATGCCGGTGTTCTGCACCTGGTCGCCAACATGCTCAGCCTCATCTTCATCGGCCTGCGCCTTGAGCAGCAGTTCGGATACGTACGAATTGGAGCGATCTACCTCCTGTCTGGCCTGGGCGGCAGCGTCCTGTCCTCTCTGTTCATCAGAAACCACATCTCGGTTGGTGCTTCAGGTGCTCTCTTTGGACTCCTCGGAGCCATGCTCTCGGAGCTTCTCACCAACTGGACCATTTACACCAACAAGGTCGCGGCCGTGATCACCCTCCTGTTCGTGATCGCGGTGAACCTGGCGCTCGGCATCCTCCCACACGTGAATAACTTCGCGCACATCGGCGGGTTCCTGACGGGTTTCCTGCTCGGATTCGTGCTGCTGATGCGGCCGCATTTCGGCTGGATGGAGCGCTACAGCCTCCCCTCCGGCAGCCCGTGCAGCTCCAAGAAGTACCTCGTCTACCAGTGGATCCTGCTTGCCATCGCCACTGCCCTCGTCATTGTCGGATTCGCGGTTGGTATGACCATGCTCTTCCGCGGGGAGAACGCCAACGACAGCTGCCACTGGTGTCACTACCTCAGCTGTGTACCAACCTCCAGATGGACCTGCTCGAACTGAGAAATACAAGGAGGCCATGAACAAATTTTCTCTGTACTTTTTTTCTTTTTGCGTAATCCTGTATGATGCTGCAAACACATATTCTGTTTATCTGTAGATAGATTAAAGAAGGATTCTTGATCGATCGATCTCATACTGTAGGCAGGCTCGTCGGGGTCTTCCACTCTTCCTATCTCTTGTACAATTGATTCATTC ] [+] EMBL AK061443 [ CTCACTCCATCCACCGCACCACCACCACTACCCTGCACCTCGATCAATTGAACGCGAGCAAGGAAAGAGAGAGAGCGAGAAAGAGAGCGGCAATGGCGACGTCGCACGCGGACGTGGAGAAGGGGGCGAGGAGGAAGGAGGTGGGGAAGGTGCCGTCGCCGCTGTACCCGCAGCACGAGGGGGAGAGGGAGTGGGTGCCGTGGATCGTCCCGTCGTTCCTCGTCGCCAACATCGTCGTCTTCGTCCTCACCATGTACGCCAACAACTGCCCCCTCCACACCCCGCCTCGCAGCGGCAAGTGCATCGCCCGCTTCCTCGGCCGCTTCTCCTTCCAGCCTCTCCACGAGAACCCGCTCCTCGGCCCCTCCTCCGCCACGCTACAGAAGATGGGAGCACTTGTGTGGGACAAGGTCGTGCACGAGCACCAGGGCTATCGCCTCATCACCTCCATCTGGCTGCATGCCGGTGTTCTGCACCTGGTCGCCAACATGCTCAGCCTCATCTTCATCGGCCTGCGCCTTGAGCAGCAGTTCGGATACGTACGAATTGGAGCGATCTACCTCCTGTCTGGCCTGGGCGGCAGCGTCCTGTCCTCTCTGTTCATCAGAAACCACATCTCGGTTGGTGCTTCAGGTGCTCTCTTTGGACTCCTCGGAGCCATGCTCTCGGAGCTTCTCACCAACTGGACCATTTACACCAACAAGGTCGCGGCCGTGATCACCCTCCTGTTCGTGATCGCGGTGAACCTGGCGCTCGGCATCCTCCCACACGTGAATAACTTCGCGCACATCGGCGGGTTCCTGACGGGTTTCCTGCTCGGATTCGTGCTGCTGATGCGGCCGCATTTCGGCTGGATGGAGCGCTACAGCCTCCCCTCCGGCAGCCCGTGCAGCTCCAAGAAGTACCTCGTCTACCAGTGGATCCTGCTTGCCATCGCCACTGCCCTCGTCATTGTCGGATTCGCGGTTGGTATGACCATGCTCTTCCGCGGGGAGAACGCCAACGACAGCTGCCACTGGTGTCACTACCTCAGCTGTGTACCAACCTCCAGATGGACCTGCTCGAACTGAGAAATACAAGGAGGCCATGAACAAATTTTCTCTGTACTTTTTTTCTTTTTGCGTAATCCTGTATGATGCTGCAAACACATATTCTGTTTATCTGTAGATAGATTAAAGAAGGATTCTTGATCGATCGATCTCATACTGTAGGCAGGCTCGTCGGGGTCTTCCACTCTTCCTATCTCTTGTACAATTGATTCATTCTTTGTATTGCAATTATTGAGGCTTGGAATCTCTTCTGTCCCTGCATCACTTCTTCCAAATTAAAACATATCTTTGAACCTGT] [+] EMBL C28047 [ AGAGCGGCAATGGCGACGTCGCACGCGGACGTGGAGAAGGGGGCGAGGAGGAAGGAGGTGGGGAAGGTGCCGTCGCCGCTNTACCCGCAGCACGAGGGGGAGAGGGAGTGGGTGCCGTGGTTCGTCCCGTCNTTCCTCGTCGCCAACATCGTCNTCTTCNTCCTCACCATGTACGCCAACAACTGCCCCCTCCACACCCCGCNTCGCAGCGGCAAGTGCATCGCCCGCTTCCTCGGCCGCTTNTCCTTCCAGCCTCTCCACGAGAACC ] [+] EMBL AU162391 [ ATCGCCACTGCCCTCGTCATTGTCGGATTCGCGGTTGGTATGACCATGCTCTTCCGCGGGGAGAACGCCAACGACAGCTGCCACTGGTGTCACTACCTCAGCTGTGTACCAACCTCCAGATGGACCTGCTCGAACTGAGAAATACAAGGAGGCCATGAACAAATTTTCTCTGTACTTTTTTTCTTTTTGCGTAATCCTGTATGATGCTGCAAACACATATTCTGTTTATCTGTAGATAGATTAAAGAAGGATTCTTGATCGATCGATCTCATACTGTAGGCAGGCTCGTCGGGGTCTTCCACTCTTCCTATCTCTTGTACAATTGATTCATTCTTTGTATTGCAATTATTGAGGCTTGGAAaaaaaaaa ] consensusID : consensus_14101#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1272 fasta sequence [AGCCGTTTCCACTTCACCATTCACCAACGCAAACGCAAACGCAACGCAGCGGCGGTAGACGAAGCAGCAGCAGGTAGCGGTTCTTGGTCGGTTCGCCATGGCAGCGGCGGCGGCGAGGTACGACGTGGAGAAGGGAGGGAGGAAGAGGGAGGGGGAGGAGGAGAGGTGCGGTTCGCCGGCGGCGGTGGCGCAGTACCCGCAGCGGGAGGGGGAGAGGGAGTGGGTGCCGTGGCTCGTCCCGGCCATCCTCGTCGCCAACGTCGTCGTCTTCGCCGTTGCCATGTACGTCAACAACTGCCCCTCCCACGCCTCTCGCGGCGGCGCGTGCGTCGCCGGATTCCTCCGCCGCTTCTCCTTCCAGCCTCTCTCCGAGAACCCGCTCCTCGGCCCCTCCTCCGCCACATTGCAGAAGATGGGAGCACTGGTATGGGACAAGGTTGTTCATGAGCATCAGGGATGGAGGCTAGTGACCTGCATCTGGCTGCACGCCGGTGTTGTTCATCTGCTTGCCAACATGCTAAGCCTCGTGCTCATCGGACTCAGGCTCGAGCAGCAGTTTGGATACATGAGAATTGGCATCATCTACCTTGTTTCTGGCATTGGAGGCAGCGTTCTTTCATCGCTGTTCATCAGAAACAGCATCTCCGTCGGTGCTTCTGGCGCTCTCTTTGGTCTTCTTGGAGCCATGCTGTCGGAGCTTTTCACCAACTGGACCATATACACGAACAAGGCTGCAGCTCTAGTGACGCTCTTGATCGTCATCGCGATCAACCTCGCCATCGGCATCCTCCCTCACGTCGACAACTTCGCCCACATCGGAGGGTTCTTGACTGGGTTCCTCCTCGGATTCATCTTCCTGATGCGCCCACACTACGGATGGATGCAGCGATATGTCCTGCCTTCCTCTGTCAAGTACACCTCCAAGAAGTACCTGGCTTATCAATGGATCTTGCTGGCCGTGGCCTCGGTCCTAGCTGTCATCGGATTCGCCGTTGGGCTGTCGATGCTCTTCAGAGGGGTGAATGCTAATGAACGCTGCCATTGGTGCCACTACCTGAGCTGCATTCCTACCTCGAGATGGACCTGCGGGAACTGAAGATTTAGTAGAAACGCAACAAACTGAAGACATTAAGGAGATTTATTGAAAGTGTTTGATGCACAGACATACAATTTTACTGTATATAACTTATACAGACATACCCTCCCAGGGGTTTAGTCAGTTCACTTGATTGATTCAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK061038 [AGCCGTTTCCACTTCACCATTCACCAACGCAAACGCAAACGCAACGCAGCGGCGGTAGACGAAGCAGCAGCAGGTAGCGGTTCTTGGTCGGTTCGCCATGGCAGCGGCGGCGGCGAGGTACGACGTGGAGAAGGGAGGGAGGAAGAGGGAGGGGGAGGAGGAGAGGTGCGGTTCGCCGGCGGCGGTGGCGCAGTACCCGCAGCGGGAGGGGGAGAGGGAGTGGGTGCCGTGGCTCGTCCCGGCCATCCTCGTCGCCAACGTCGTCGTCTTCGCCGTTGCCATGTACGTCAACAACTGCCCCTCCCACGCCTCTCGCGGCGGCGCGTGCGTCGCCGGATTCCTCCGCCGCTTCTCCTTCCAGCCTCTCTCCGAGAACCCGCTCCTCGGCCCCTCCTCCGCCACATTGCAGAAGATGGGAGCACTGGTATGGGACAAGGTTGTTCATGAGCATCAGGGATGGAGGCTAGTGACCTGCATCTGGCTGCACGCCGGTGTTGTTCATCTGCTTGCCAACATGCTAAGCCTCGTGCTCATCGGACTCAGGCTCGAGCAGCAGTTTGGATACATGAGAATTGGCATCATCTACCTTGTTTCTGGCATTGGAGGCAGCGTTCTTTCATCGCTGTTCATCAGAAACAGCATCTCCGTCGGTGCTTCTGGCGCTCTCTTTGGTCTTCTTGGAGCCATGCTGTCGGAGCTTTTCACCAACTGGACCATATACACGAACAAGGCTGCAGCTCTAGTGACGCTCTTGATCGTCATCGCGATCAACCTCGCCATCGGCATCCTCCCTCACGTCGACAACTTCGCCCACATCGGAGGGTTCTTGACTGGGTTCCTCCTCGGATTCATCTTCCTGATGCGCCCACACTACGGATGGATGCAGCGATATGTCCTGCCTTCCTCTGTCAAGTACACCTCCAAGAAGTACCTGGCTTATCAATGGATCTTGCTGGCCGTGGCCTCGGTCCTAGCTGTCATCGGATTCGCCGTTGGGCTGTCGATGCTCTTCAGAGGGGTGAATGCTAATGAACGCTGCCATTGGTGCCACTACCTGAGCTGCATTCCTACCTCGAGATGGACCTGCGGGAACTGAAGATTTAGTAGAAACGCAACAAACTGAAGACATTAAGGAGATTTATTGAAAGTGTTTGATGCACAGACATACAATTTTACTGTATATAACTTATACAGACATACCCTCCCAGGGGTTTAGTCAGTT ] [+] EMBL CF315729 [ ACTGAAGACATTAAGGAGATTTATTGAAAGTGTTTGATGCACAGACATACAATTTTACTGTATATAACTTATACAGACATACCCTCCCAGGGGTTTAGTCAGTTCAC ] [-] EMBL CF315728 [ CTGAAGACATTAAGGAGATTTATTGAAAGTGTTTTATGCCCAGACAAACAATTTTACTGTATATAACTTAAACAGACATACCCTCCCAGGGGTTTAGTCAGTTCACTTGATTGATTCAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_14101#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 691 fasta sequence [ACCCGCAGCACGAGGGGGGAGAGGGACCGGGTCCCGTGGATCGTCCCGTCGTTCCTCGTCGCCAACATCGTCGTCTTCGTCCTCACCATGTACGCCAACAACTGCCCCCTCCACACCCCGCCTCGCAGCGGCAAGTGCATCGCCCGCTTCCTCGGCCGCTTCTCCTTCCAGCCTCTCCACGAGAACCCGCTCCTCGGCCCCTCCTCCGCCACGCTACAGAAGATGGGAGCACTTGTGTGGGACAAGGTCGTGCACGAGCACCAGGGCTATCGCCTCATCACCTCCATCTGGCTGCATGCCGGTGTTCTGCACCTGGTCGCCAACATGCTCAGCCTCATCTTCATCGGCCTGCGCCTTGAGCAGCAGTTCGGATACGT-ACGAATTGGAGCGATCTACCT-CCTGTCTGGCCTGGGCGGCAGCGTCCTGTCCTCTCTGTTCATCAGAAACCACAT-CTCGGTTGGTGCTT-CAGGTGCTCTCTTT-GGACTCCTCGGAGCCATGCTCTCGG-AGCTTCTCACCAACTGGA-CCATTTACACCAACAAGGTCGCGGCCGTGATCACCCTCCTGTTCGTGATCGCGGTGAACCTGGCGCTCGGCATCCTCCCACACGTGAATAACTTCGCGCACATCGGCGGGTTCCTGACGGGTTTCCTGCTCGGATTCGTGCTGCTGATGC-GCCGCAAGCTTATTCCAA] [-] EMBL BU673401 [ACCCGCAGCACGAGGGGGGAGAGGGACCGGGTCCCGTGGATCGTCCCGTCGTTCCTCGTCGCCAACATCGTCGTCTTCGTCCTCACCATGTACGCCAACAACTGCCCCCTCCACACCCCGCCTCGCAGCGGCAAGTGCATCGCCCGCTTCCTCGGCCGCTTCTCCTTCCAGCCTCTCCACGAGAACCCGCTCCTCGGCCCCTCCTCCGCCACGCTACAGAAGATGGGAGCACTTGTGTGGGACAAGGTCGTGCACGAGCACCAGGGCTATCGCCTCATCACCTCCATCTGGCTGCATGCCGGTGTTCTGCACCTGGTCGCCAACATGCTCAGCCTCATCTTCATCGGCCTGCGCCTTGAGCAGCAGTTCGGATACGT ACGAATTGGAGCGATCTACCT CCTGTCTGGCCTGGGCGGCAGCGTCCTGTCCTCTCTGTTCATCAGAAACCACAT CTCGGTTGGTGCTT CAGGTGCTCTCTTT GGACTCCTCGGAGCCATGCTCTCGG AGCTTCTCACCAACTGGA CCATTTACACCAACAAGGTCGCGGCCGTGATCACCCTCCTGTTCGTGATCGCGGTGAACCTGGCGCTCGGCATCCTCCCACACGTGAATAACTTCGCGCACATCGGCGGGTTCCTGACGGGTTTCCTGCTCGGATTCGTGCTGCTGATGC GCCGCAAGCTTATTCC ] [-] EMBL BU673543 [ CCCGCAGCACGA GGGGGAGAGGGACCGGGTGCCGTGGATCGTCCCGTCGTTCCTCGTCGCCAACATCGTCGTCTTCGTCCTCACCATGTACGCCAACAACTGCCCCCTCCACACCCCGCCTCGCAGCGGCAAGTGCATCGCCCGCTTCCTCGGCCGCTTCTCCTTCCAGCCTCTCCACGAGAACCCGCTCCTCGGCCCCTCCTCCGCCACGCTACAGAAGATGGGAGCACTTGTGTGGGACAAGGTCGTGCACGAGCACCAGGGCTATCGCCTCATCACCTCCATCTGGCTGCATGCCGGTGTTCTGCACCTGGTCGCCAACATGCTCAGCCTCATCTTCATCGGCCTGCGCCTTGAGCAGCAGTTCGGATACGT ACGAATTGGAGCGATCTACCT CCTGTCTGGCCTGGGCGGCAGCGTCCTGTCCTCTCTGTTCATCAGAAACCACAT CTCGGTTGGTGCTT CAGGTGCTCTCTTT GGACTCCTCGGAGCCATGCTCTCGG AGCTTCTCACCAACTGGA CCATTTACACCAACAAGGTCGCGGCCGTGATCACCCTCCTGTTCGTGATCGCGGTGAACCTGGCGCTCGGCATCCTCCCACACGTGAATAACTTCGCGCACATCGGCGGGTTCCTGACGGGTTTCCTGCTC GATTCGTGC ] [-] EMBL BI306649 [ CCGCCT GCAGCGGCAAGTGCATCGCCCGCTTCCTCGGCCGCTTCTCCTTCCAGCCTCTCCACGAGAACCCGCTCCTCGGCCCCTCCTCCGCCACGCTACAGAAGATGGGAGCACTTGTGT GGACAAGGTCGTGCACGAGCACCAGGGCTATCGCCTCATCACCTCCATCTGGCTGCATGCCGGTGTTCTGCACCTGGTCGCCAACATGCTCAGCCTCATCTTCATCGGCCTGCGCCTTGAGCAGCAGTTCGGATACGT ACGAATTGGAGCGATCTACCT CCTGTCTGGCCTGGGCGGCAGCGTCCTGTCCTCTCTGTTCATCAGAAACCACAT CTCGGTTGGTGCTT CAGGTGCTCTCTTT GGACTCCTCGGAGCCATGCTCTCGG AGCTTCTCACCAACTGGA CCATTTACACCAACAAGGTCGCGGCCGTGATCACCCTCCTGTTCGTGATCGCGGTGAACCTGGCGCTCGGCATCCTCCCACACGTGAATAACTTCGCGCACATCGGCGGGTTCCTGACGGGTTTCCTGCTCGGATTCGTGCTGCTGATGCGGCCGCAAGCTTATTCCAA] [+] EMBL OSC01211A [ ggCGCCTCGCAGCGGCAAGTGCATCGCCCGCTTCCTCGGCCGCTTCTCCTTCCAGCCTCTCCACGAGAACCCGCTCCTCGGCCCCTCCTCCGCCACGCTACAGAAGATGGGAGCACTTGTGTGGGACAAGGTCGTGCACGAGCACCAGGGCTATCGCCTCATCACCTCCATCTGGCTGCATGCCGGTGTTCTGCACCTGGTCGCCAACATGCTCAGCCTCATCTTCATCGGCCTGCGCCTTGAGCAGCAGTTCGGATACGT ACGAATTGGAGCGATCTACCT CCTGTCTGGCCTGGGCGGCAGCGTCCTGTCCTCTCTGTTCATCAGAAACCACAT CTCGGTTGGTGCTT CAGGTGCTCTCTTTGGGACTCCTCGGAGCCATGCTCTCGGNAGCTTCTCACCAACTGGANCCATTTACACCAACAAGGTCGCGGCCGTGATCANCCTCCTGTTCGTGATAGCGGTGAACC ] [+] EMBL AU091614 [ CGCCTTGAGCAGCAGTTCGGATACGTCACGAATTGGAGCGATCTACCTCCCTGTCTGGCCTGGGCGGCAGCGTCCTGTCCTCTCTGTTCATCAGAAACCACATACTCGGTTGGTGCTTGCAGGTGCTCTCTTT GGACTCCTCGGAGCCATGCTCTCGG AGCTTCTCACCAACTGGA CCATTTACACCAACAAGGTCGCGGCCGTGATCACCCTCCTGTTCGTGATCGCGGTGAACNTGGCGCTCGGCATCCTCCCACACGTGAATAACTTCGCGCACATCGGCGGGTTCCTGACGGGTTTCCTGCTCGGATTCG ] consensusID : consensus_14101#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 517 fasta sequence [GCACGAGCTTTTCACCAACTGGGACCATATACACGAACAAGGCTGCAGCTCTANTGACGCTCTTGATCGTCATCGCGATCAACCTCGCCATCGGGNATCCTCCCTCACGTCGACAACTTCGCCCACATCGGAGGGTTCTTGACTGGGTTCCTCCTCGGATTCATCTTCCTGATGCGCCCACACTACGGATGGATGCAGCGATATNTNCTGCCTTCCNCTGTCAANTANACCTCCAAAAATACCTGGCTTATCAATGGATCTTGCTTGCCATGGCCTCAGTCCTATCTNTNATCGGATTCGCCGTTGGGCTGTCNATGCTCTTCAGAGGGGTGAANGCTGATGAACCCTNCCATTGGTGCCACTATCTGAGCTGCATTCCTACCTCNAGATGGACCNGCGGGAANTGAANAATTATTNGAAACGCCCNAACTGAANACATTNNNGGANATATATTGANGGGTGTGTGATGCCNNACATNCNATTTTACTGTNTNTNACTTANNCNACNTNCCTCCCNN] [+] EMBL BE228995 [GCACGAGCTTTTCACCAACTGGGACCATATACACGAACAAGGCTGCAGCTCTANTGACGCTCTTGATCGTCATCGCGATCAACCTCGCCATCGGGNATCCTCCCTCACGTCGACAACTTCGCCCACATCGGAGGGTTCTTGACTGGGTTCCTCCTCGGATTCATCTTCCTGATGCGCCCACACTACGGATGGATGCAGCGATATNTNCTGCCTTCCNCTGTCAANTANACCTCCAAAAATACCTGGCTTATCAATGGATCTTGCTTGCCATGGCCTCAGTCCTATCTNTNATCGGATTCGCCGTTGGGCTGTCNATGCTCTTCAGAGGGGTGAANGCTGATGAACCCTNCCATTGGTGCCACTATCTGAGCTGCATTCCTACCTCNAGATGGACCNGCGGGAANTGAANAATTATTNGAAACGCCCNAACTGAANACATTNNNGGANATATATTGANGGGTGTGTGATGCCNNACATNCNATTTTACTGTNTNTNACTTANNCNACNTNCCTCCCNN] consensusID : consensus_14101#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 362 fasta sequence [CCNGTTGAACAANANTACTGGCNCNTCTNTGGATCTTGCTGGTNGTGGCCTCGGTCCTAGCTGTCATCGGATTCGCCGTTGGGCTGTCGATGCTCTTCAGAGGGGTGAATGCTAATGAACGCTGCCATTGGTGCCACTACCTGAGCTGCATTCCTACCTCNAGATGGACCTGCGGGAACTGAAGATTTAGTANAAACGCAACAAACTGAAGACATTAAGGAGATTTATTGAAAGTGTTTGATGCACANACATACAATTTTACTGTNTATAACTTATACAGACATACCCTCCCAGGGGTTTAGTCAGTTCACTTGATTGATTCATTCTGTTCGTTTGTCTGAATTATTTGGAATAGAAACATC] [+] EMBL AA753330 [CCNGTTGAACAANANTACTGGCNCNTCTNTGGATCTTGCTGGTNGTGGCCTCGGTCCTAGCTGTCATCGGATTCGCCGTTGGGCTGTCGATGCTCTTCAGAGGGGTGAATGCTAATGAACGCTGCCATTGGTGCCACTACCTGAGCTGCATTCCTACCTCNAGATGGACCTGCGGGAACTGAAGATTTAGTANAAACGCAACAAACTGAAGACATTAAGGAGATTTATTGAAAGTGTTTGATGCACANACATACAATTTTACTGTNTATAACTTATACAGACATACCCTCCCAGGGGTTTAGTCAGTTCACTTGATTGATTCATTCTGTTCGTTTGTCTGAATTATTTGGAATAGAAACATC] consensusID : consensus_14101#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 269 fasta sequence [ATTCTGTTTATCTGTAGATAGATTAAAGAAGGATTCTTGATCGATCGATCTCATACTGTAGGCAGGCTCGTCGGGGTCTTCCACTCTTCCTATCTCTTGTACAATTGATTCATTCTTTGTATTGCAATTATTGAGGCTTGGAATCAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAACAAAAAAAAAAA] [+] EMBL CF327419 [ATTCTGTTTATCTGTAGATAGATTAAAGAAGGATTCTTGATCGATCGATCTCATACTGTAGGCAGGCTCGTCGGGGTCTTCCACTCTTCCTATCTCTTGTACAATTGATTCATTCTTTGTATTGCAATTATTGAGGCTTGGAATCAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAACAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14101#0 ------------------------------------------------------------ consensus_14101#2 ------------------------------------------------------------ consensus_14101#1 AGCCGTTTCCACTTCACCATTCACCAACGCAAACGCAAACGCAACGCAGCGGCGGTAGAC 60 consensus_14101#4 ------------------------------------------------------------ consensus_14101#3 ------------------------------------------------------------ consensus_14101#5 ------------------------------------------------------------ consensus_14101#0 ------------------------------------------------------------ consensus_14101#2 ------------------------------------------------------------ consensus_14101#1 GAAGCAGCAGCAGGTAGCGGTTCTTGGTCGGTTCGCCATGGCAGCGGCGGCGGCGAGGTA 120 consensus_14101#4 ------------------------------------------------------------ consensus_14101#3 ------------------------------------------------------------ consensus_14101#5 ------------------------------------------------------------ consensus_14101#0 ------------------------------------------------------------ consensus_14101#2 ------------------------------------------------------------ consensus_14101#1 CGACGTGGAGAAGGGAGGGAGGAAGAGGGAGGGGGAGGAGGAGAGGTGCGGTTCGCCGGC 180 consensus_14101#4 ------------------------------------------------------------ consensus_14101#3 ------------------------------------------------------------ consensus_14101#5 ------------------------------------------------------------ consensus_14101#0 ------------------------------------------------------------ consensus_14101#2 ------------------------------------------------------------ consensus_14101#1 GGCGGTGGCGCAGTACCCGCAGCGGGAGGGGGAGAGGGAGTGGGTGCCGTGGCTCGTCCC 240 consensus_14101#4 ------------------------------------------------------------ consensus_14101#3 ------------------------------------------------------------ consensus_14101#5 ------------------------------------------------------------ consensus_14101#0 ------------------------------------------------------------ consensus_14101#2 ------------------------------------------------------------ consensus_14101#1 GGCCATCCTCGTCGCCAACGTCGTCGTCTTCGCCGTTGCCATGTACGTCAACAACTGCCC 300 consensus_14101#4 ------------------------------------------------------------ consensus_14101#3 ------------------------------------------------------------ consensus_14101#5 ------------------------------------------------------------ consensus_14101#0 ------------------------------------------------------------ consensus_14101#2 ------------------------------------------------------------ consensus_14101#1 CTCCCACGCCTCTCGCGGCGGCGCGTGCGTCGCCGGATTCCTCCGCCGCTTCTCCTTCCA 360 consensus_14101#4 ------------------------------------------------------------ consensus_14101#3 ------------------------------------------------------------ consensus_14101#5 ------------------------------------------------------------ consensus_14101#0 ---------------------------------------------------------CCT 3 consensus_14101#2 ------------------------------------------------------------ consensus_14101#1 GCCTCTCTCCGAGAACCCGCTCCTCGGCCCCTCCTCCGCCACATTGCAGAAGATGGGAGC 420 consensus_14101#4 ------------------------------------------------------------ consensus_14101#3 ------------------------------------------------------------ consensus_14101#5 ------------------------------------------------------------ consensus_14101#0 CACTCCATCCACCGCACCACCACCACTACCCTGCACCTCGATCAATTGAACGCGAGCAAG 63 consensus_14101#2 ------------------------------------------------------------ consensus_14101#1 ACTGGTATGGGACAAGGTTGTTCATGAGCATCAGGGATGGAGGCTAGTGACCTGCATCTG 480 consensus_14101#4 ------------------------------------------------------------ consensus_14101#3 ------------------------------------------------------------ consensus_14101#5 ------------------------------------------------------------ consensus_14101#0 GAAAGAGAGAGAGCGAGAAAGAGAGCGGCAATGGCGACGTCGCACGCGGACGTGGAGAAG 123 consensus_14101#2 ------------------------------------------------------------ consensus_14101#1 GCTGCACGCCGGTGTTGTTCATCTGCTTGCCAACATGCTAAGCCTCGTGCTCATCGGACT 540 consensus_14101#4 ------------------------------------------------------------ consensus_14101#3 ------------------------------------------------------------ consensus_14101#5 ------------------------------------------------------------ consensus_14101#0 GGGGCGAGGAGGAAGGAGGTGGGGAAGGTGCCGTCGCCGCTGTACCCGCAGCACGAGGGG 183 consensus_14101#2 -------------------------------------------ACCCGCAGCACGAGGGG 17 consensus_14101#1 CAGGCTCGAGCAGCAGTTTGGATACATGAGAATTGGCATCATCTACCTTGTTTCTGGCAT 600 consensus_14101#4 ------------------------------------------------------------ consensus_14101#3 ------------------------------------------------------------ consensus_14101#5 ------------------------------------------------------------ consensus_14101#0 G-AGAGGGAGTGGGTGCCGTGGATCGTCCCGTCGTTCCTCGTCGCCAACATCGTCGTCTT 242 consensus_14101#2 GGAGAGGGACCGGGTCCCGTGGATCGTCCCGTCGTTCCTCGTCGCCAACATCGTCGTCTT 77 consensus_14101#1 TGGAGGCAGCGTTCTTTCATCGCTGTTCATCAGAAACAGCATCTCCGTCGGTGCTTCTGG 660 consensus_14101#4 ------------------------------------------------------------ consensus_14101#3 ------------------------------------------------------------ consensus_14101#5 ------------------------------------------------------------ consensus_14101#0 CGTCCTCACCATGTACGCCAACAACTGCCCCCTCCACACCCCGCCTCGCAGCGGCAAGTG 302 consensus_14101#2 CGTCCTCACCATGTACGCCAACAACTGCCCCCTCCACACCCCGCCTCGCAGCGGCAAGTG 137 consensus_14101#1 CGCTCTCTTTGGTCTTCTTGGAGCCATGCTGTCGGAGCTTTTCACCAACTGGACCATATA 720 consensus_14101#4 ------------------------------------------------------------ consensus_14101#3 -----------------------------GCACGAGCTTTTCACCAACTGGGACCATATA 31 consensus_14101#5 ------------------------------------------------------------ consensus_14101#0 CATCGCCCGCTTCCTCGGCCGCTTCTCCTTCCAGCCTCTCCACGAGAACCCGCTCCTCGG 362 consensus_14101#2 CATCGCCCGCTTCCTCGGCCGCTTCTCCTTCCAGCCTCTCCACGAGAACCCGCTCCTCGG 197 consensus_14101#1 CACGAACAAGGCTGCAGCTCTAGTGACGCTCTTGATCGTCATCGCGATCAACCTCGCCAT 780 consensus_14101#4 ------------------------------------------------------------ consensus_14101#3 CACGAACAAGGCTGCAGCTCTANTGACGCTCTTGATCGTCATCGCGATCAACCTCGCCAT 91 consensus_14101#5 ------------------------------------------------------------ consensus_14101#0 CCCCTCCTCCGCCACGCTACAGAAGATGGGAGCACTTGTGTGGGACAAGGTCGTGCACGA 422 consensus_14101#2 CCCCTCCTCCGCCACGCTACAGAAGATGGGAGCACTTGTGTGGGACAAGGTCGTGCACGA 257 consensus_14101#1 CGG-CATCCTCCCTCACGTCGACAACTTCGCCCACATCGGAGGGTTCTTGACTGGGTTCC 839 consensus_14101#4 ------------------------------------------------------------ consensus_14101#3 CGGGNATCCTCCCTCACGTCGACAACTTCGCCCACATCGGAGGGTTCTTGACTGGGTTCC 151 consensus_14101#5 ------------------------------------------------------------ consensus_14101#0 GCACCAGGGCTATCGCCTCATCACCTCCATCTGGCTGCATGCCGGTGTTCTGCACCTGGT 482 consensus_14101#2 GCACCAGGGCTATCGCCTCATCACCTCCATCTGGCTGCATGCCGGTGTTCTGCACCTGGT 317 consensus_14101#1 TCCTCGGATTCATCTTCCTGATGCGCCCACACTACGGATGGATGCAGCGATATGTCCTGC 899 consensus_14101#4 ------------------------------------------------------------ consensus_14101#3 TCCTCGGATTCATCTTCCTGATGCGCCCACACTACGGATGGATGCAGCGATATNTNCTGC 211 consensus_14101#5 ------------------------------------------------------------ consensus_14101#0 CGCCAACATGCTCAGCCTCATCTTCATCGGCCTGCGCCTTGAGCAGCAGTTCGGATACGT 542 consensus_14101#2 CGCCAACATGCTCAGCCTCATCTTCATCGGCCTGCGCCTTGAGCAGCAGTTCGGATACGT 377 consensus_14101#1 CTTC--CTCTGTCAAGTACACCTCCAAGAA---GTACCTGGCTTATCAAT--GGAT-CTT 951 consensus_14101#4 -----------------CCNGTTGAACAAN---ANTACTGGCNCNTCTNT--GGAT-CTT 37 consensus_14101#3 CTTC--CNCTGTCAANTANACCTCCA-AAA---ATACCTGGCTTATCAAT--GGAT-CTT 262 consensus_14101#5 --------------------ATTCTGTTTATCTGTAGATAGATTAAAGAA--GGATTCTT 38 * * * **** * * consensus_14101#0 ACGAATTGGAGCGATCTACCTCCTGTCTGGCCTGGGCGGCAGCGTCCTGTCCTCTCTGTT 602 consensus_14101#2 ACGAATTGGAGCGATCTACCTCCTGTCTGGCCTGGGCGGCAGCGTCCTGTCCTCTCTGTT 437 consensus_14101#1 GC---TGGCCGTGGCCTCGGTCCTAGCTGTCATCGGATTCGCCGTTGGGCTGTCGATGCT 1008 consensus_14101#4 GC---TGGTNGTGGCCTCGGTCCTAGCTGTCATCGGATTCGCCGTTGGGCTGTCGATGCT 94 consensus_14101#3 GC---TTGCCATGGCCTCAGTCCTATCTNTNATCGGATTCGCCGTTGGGCTGTCNATGCT 319 consensus_14101#5 G--------ATCGATCGATCTCATA-CTGTAGGCAGGCTCGTCG--GGGTCTTCCACTCT 87 * * ** * ** * * ** * ** * consensus_14101#0 CATCAGAAAC-CACATCTCGGTTGGTGCTTCAGGTGCTCTCTTTGGACTCCTC-GGAGCC 660 consensus_14101#2 CATCAGAAAC-CACATCTCGGTTGGTGCTTCAGGTGCTCTCTTTGGACTCCTC-GGAGCC 495 consensus_14101#1 CTTCAGAGGGGTGAATGCTAATGAACGCTGCCATTGGTGCCACTACCTGAGCT-GCATTC 1067 consensus_14101#4 CTTCAGAGGGGTGAATGCTAATGAACGCTGCCATTGGTGCCACTACCTGAGCT-GCATTC 153 consensus_14101#3 CTTCAGAGGGGTGAANGCTGATGAACCCTNCCATTGGTGCCACTATCTGAGCT-GCATTC 378 consensus_14101#5 TCCTATCTCTTGTACAATTGATTCATTCTTT--GTATTGCAATTATTGAGGCTTGGAATC 145 * * ** * * * * * * consensus_14101#0 ATGCTCTCGGA--GCTTCTCACCAACTGGACCATTTACACCAACA----AGGTCGCGGCC 714 consensus_14101#2 ATGCTCTCGGA--GCTTCTCACCAACTGGACCATTTACACCAACA----AGGTCGCGGCC 549 consensus_14101#1 CTACCTCGAGATGGACCTGCGGGAACTGAAGATTTAGTAGAAACGCAACAAACTGAAGAC 1127 consensus_14101#4 CTACCTCNAGATGGACCTGCGGGAACTGAAGATTTAGTANAAACGCAACAAACTGAAGAC 213 consensus_14101#3 CTACCTCNAGATGGACCNGCGGGAANTGAANAATTATTNGAAACGCC-CNAACTGAANAC 437 consensus_14101#5 AAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 205 * ** * ** consensus_14101#0 GTGATCACCCTCCTGTTCGTGATCGCGGTGAACCTGGCGCTCGGCATCCTCCCACACGTG 774 consensus_14101#2 GTGATCACCCTCCTGTTCGTGATCGCGGTGAACCTGGCGCTCGGCATCCTCCCACACGTG 609 consensus_14101#1 ATTAAGG-AGATTTATTGAAAG-TGTT-TGATGCACAGACATACAATTTTACTGTATATA 1184 consensus_14101#4 ATTAAGG-AGATTTATTGAAAG-TGTT-TGATGCACANACATACAATTTTACTGTNTATA 270 consensus_14101#3 ATTNNNGGANATATATTGANGGGTGTG-TGATGC-CNNACATNCNATTTTACTGTNTNTN 495 consensus_14101#5 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAACAAAAAAA 265 * * consensus_14101#0 AATAACTTC-GCGCACATCGGCGGGTTCCTGACGGGTTTCCTGCTCGGATTCGTGCTGCT 833 consensus_14101#2 AATAACTTC-GCGCACATCGGCGGGTTCCTGACGGGTTTCCTGCTCGGATTCGTGCTGCT 668 consensus_14101#1 ACTTATACAGACATACCCTCCCAGGGGTTTAGTCAGTTCACTTGATTGATTCAAAAGAAA 1244 consensus_14101#4 ACTTATACAGACATACCCTCCCAGGGGTTTAGTCAGTTCACTTGATTGATTCATTCTGTT 330 consensus_14101#3 ACTTANNCN-ACNTNCCTCCCNN------------------------------------- 517 consensus_14101#5 AAAA-------------------------------------------------------- 269 * consensus_14101#0 GATGCGGCCGCATTTCGGCTGGATGGAGCGCTACAGCCTCCCCTCCGGCAGCCCGTGCAG 893 consensus_14101#2 GATGCG-CCGCAAGCTTATTCCAA------------------------------------ 691 consensus_14101#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAA-------------------------------- 1272 consensus_14101#4 CGTTTGTCTGAATTATTTGGAATAGAAACATC---------------------------- 362 consensus_14101#3 ------------------------------------------------------------ consensus_14101#5 ------------------------------------------------------------ consensus_14101#0 CTCCAAGAAGTACCTCGTCTACCAGTGGATCCTGCTTGCCATCGCCACTGCCCTCGTCAT 953 consensus_14101#2 ------------------------------------------------------------ consensus_14101#1 ------------------------------------------------------------ consensus_14101#4 ------------------------------------------------------------ consensus_14101#3 ------------------------------------------------------------ consensus_14101#5 ------------------------------------------------------------ consensus_14101#0 TGTCGGATTCGCGGTTGGTATGACCATGCTCTTCCGCGGGGAGAACGCCAACGACAGCTG 1013 consensus_14101#2 ------------------------------------------------------------ consensus_14101#1 ------------------------------------------------------------ consensus_14101#4 ------------------------------------------------------------ consensus_14101#3 ------------------------------------------------------------ consensus_14101#5 ------------------------------------------------------------ consensus_14101#0 CCACTGGTGTCACTACCTCAGCTGTGTACCAACCTCCAGATGGACCTGCTCGAACTGAGA 1073 consensus_14101#2 ------------------------------------------------------------ consensus_14101#1 ------------------------------------------------------------ consensus_14101#4 ------------------------------------------------------------ consensus_14101#3 ------------------------------------------------------------ consensus_14101#5 ------------------------------------------------------------ consensus_14101#0 AATACAAGGAGGCCATGAACAAATTTTCTCTGTACTTTTTTTCTTTTTGCGTAATCCTGT 1133 consensus_14101#2 ------------------------------------------------------------ consensus_14101#1 ------------------------------------------------------------ consensus_14101#4 ------------------------------------------------------------ consensus_14101#3 ------------------------------------------------------------ consensus_14101#5 ------------------------------------------------------------ consensus_14101#0 ATGATGCTGCAAACACATATTCTGTTTATCTGTAGATAGATTAAAGAAGGATTCTTGATC 1193 consensus_14101#2 ------------------------------------------------------------ consensus_14101#1 ------------------------------------------------------------ consensus_14101#4 ------------------------------------------------------------ consensus_14101#3 ------------------------------------------------------------ consensus_14101#5 ------------------------------------------------------------ consensus_14101#0 GATCGATCTCATACTGTAGGCAGGCTCGTCGGGGTCTTCCACTCTTCCTATCTCTTGTAC 1253 consensus_14101#2 ------------------------------------------------------------ consensus_14101#1 ------------------------------------------------------------ consensus_14101#4 ------------------------------------------------------------ consensus_14101#3 ------------------------------------------------------------ consensus_14101#5 ------------------------------------------------------------ consensus_14101#0 AATTGATTCATTCTTTGTATTGCAATTATTGAGGCTTGGAATCTCTTCTGTCCCTGCATC 1313 consensus_14101#2 ------------------------------------------------------------ consensus_14101#1 ------------------------------------------------------------ consensus_14101#4 ------------------------------------------------------------ consensus_14101#3 ------------------------------------------------------------ consensus_14101#5 ------------------------------------------------------------ consensus_14101#0 ACTTCTTCCAAATTAAAACATATCTTTGAACCTGT 1348 consensus_14101#2 ----------------------------------- consensus_14101#1 ----------------------------------- consensus_14101#4 ----------------------------------- consensus_14101#3 ----------------------------------- consensus_14101#5 ----------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||