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Oryza sativa
cluster # 14102 cluster # 14102       Sequences # 15       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14102#0 length = 1906 sequences # 12  
consensus_14102#1 length = 747 sequences # 1  
consensus_14102#2 length = 622 sequences # 2  

consensusID : consensus_14102#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 1906
fasta sequence
                              [CGTAATCCTAAATTAATTGACCNCGCATTAAATGGATTAAACGAAGATCCCCCACTGTCCCCTGTCTACTATCCAACGAAACCACAAGCNAAGGGAACGGNCTTGNCGGAATCAAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGGATAAGTGGGAGCCCTCGGGCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAGTCGGAAGCGGGGCCTGGCCCCTCCTTTTGGCT-CTANNGCCCGAGTCCCTCGGGCCGATCCGGGCGGAAGACATTGTCAGGTGGGGAGTTTGGCTGGGGCGGNACATCTGTTNAAAGATAACGCAGGTGTCCTAAGATGAGCTCAACGAGAACAGAAATCTCGTGTGGAACAAAAGGGTAAAAGCTCGGAGGCCCCTGCCCTGGAGAACGACGCTGCAGCACAACCGCCACCGCAAGAGCCTATGCAAGATACGGTTGAAGAGAACAAGGTGGTCGCCGATGGCGCTATCGTGGGTGCCTCAGAGGAGGAGCCAGCCGAACGTGGCAAGAGCGTTGCGATGTTTGAGTGCAACATCTGCTTCGAGATGGCTTCCGAGCCTGTGGTAACTTCGTGTGGACATCTCTTCTGCTGGCCTTGTTTGTACCAATGGCTGCATGTCCACTCAACTCACAAGGAGTGCCCTGTCTGCAAAGGCGAGGTCACTGAAGGGAACATCACTCCAATTTAC-GGGAGAGGGAATTCGACTTCGGACGCGGAAAAGAAGGTTGCGGAGGAGGG-AAATGTATCAGGCCCTACAATCCCACCAAGGCCACATGGCAATCGGCTCGAGAGCTTCCGGCAGAAATTCCACCATTTGCGCCCGATTTCTAGAAGGCTTGGCGAGGCACATGGGATATTGTCTTCTTGGAGGCGCATACTTGATCAGCAGATTATGAATAGTGTGAGTAGGTTTGAGGGGCCTCCTGAATCAACTGTCCAGGAAATGATTGATCATGCTCATCATGCTAGCCGTTTAGGTCGAATTACTACTAGAATGAGGGCAAGGAGGTTGCAGAGGGAAGCCGAAAACTCTACATTTGTTGCTTCTTCTGCTGCGGAGAGTGGGCTGCCAGCAAACAGCACATCGGATCTGCCTAGGCGTAGCTCAAGTCCATTTTCCTCGGAAAGAATTGATTTATTGCAACACTTTGTTGACCTTGCAAGCACGGAAAGATTGGCAAGCGCTGTGAGTGACCTTAGAAGAATGGTTAGGCCGAGCCCTTATGGAGCATCAACTTCATCAAATCCACCAAATCCACCAAATACCGAGCTGCTGCCAGTTGATGGGAATCATGTTGCCGTTGCACTAGCTGCAGATCAAGCTTCCAATTCAAGCACCATGGCTGTAATTCAGGAGGATGCTGCTTTTACTGAAAGCACAGGGGAACCAAGTAATGCAGGGTCTTCGAGATCCCTGAGGAGGAGAGGAAGAAATGATGCCTTAGGTTCTTTGGATGTGGATGGTGTGGGACTACACCGGAACAAGAGAAGGCGGCTGAACTGAGGCTCTCGGGCTGCAACTGCTCGTCTAATTTTCTTGGTTTGCTGTTCTCAGTTAGCCCTTTTCTCTCTTCGGGGACGTATCTTCTGGTTGTGATATAAAATTCTCTCTTCTACTTGTTTATTAGGTGCTGCTGAGTTCA-TTGCAAATGTATTCCTTCGGAGTCCCGACCTGTTTAATTTATATGCTTTTCCACGAGGCATGTATACTAAGGAAAGTGAGGGATTGTCATCAGGTGAATTTACTGGATTGTAAATTGCCTATGCAAATGTATTAGATGGAAATGATCTTGAGGTCAAATAATACATTGACACCTGAATCTCAAAAAAAAAGA]

[-] EMBL AU164257             [CGTAATCCTAAATTAATTGACCNCGCATTAAATGGATTAAACGAAGATCCCCCACTGTCCCCTGTCTACTATCCAACGAAACCACAAGCNAAGGGAACGGNCTTGNCGGAATCAAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGGATAAGTGGGAGCCCTCGGGCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAGTCGGAAGCGGGGCCTGGCCCCTCCTTTTGGCT CTANAG CCGAGTCCCTCGGGCCGATCCGGGCGGAAGACATTGTCAGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL AU163371             [                                                                                          caaGGAACGGNCTTGGCGGAATCAACCGGGNAAAGAAGACCCTNTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTNAGAGGTGTAGGATAAGTGGGAGCCCTCGGGCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAGTCGGAAGCGGGGCCTGGCCCCTCCTTTTGGCTCCTA NANNCGAGTCCCTCGGGCCGANCCGGGCGGAAGACATTGTCAGGTGGGGAGTTTGGCTGGGGCGGNACATCTGTTNAAAGATAACGCAGGTGTCCTAAGATGAGCTCAACGAGAACAGAAATCTCGTGTGGAACAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL AU068815             [                                                                                                                             AAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGGATAAGTGGGAGCCCTCGGGCGCAANTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGANTCGGAANCGGGGCCTGGCCCCTCCTTTTGGCT CTANNGCCCGAGTCCCTCGGGCCGAACCGGGCGGAAGACATTGTCAGGTGGGGAGTTTGGCTGGGGCGGNACATCTGTTNAAAGATNAAGCAGGTGTCCTAAGATGAGCTCAACGAGNACAGAAATNTCGTGTGGnaa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CB665625             [                                                                                                                                                              TGTGAAATGACTTGAGAGGTGTAGGATAAGTGGGAGCCCTCGGGCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAGTCGGAAGCGGGGCCTGGCCCCTCCTTTTGGCT CTAAGGCCCGAGTCCCTCGGGCCGATCCGGGCGGAAGACATTGTCAGGTGGGGAGTTTGGCTGGGGCGGCACATCTGTTAAAAGATAACGCAGGTGTCCTAAGATGAGCTCAACGAGAACAGAAATCTCGTGTGGAACAAAAGGGTAAAAGCTCGGAGGCCCCTGCCCTGGAGAACGACGCTGCAGCACAACCGCCACCGCAAGAGCCTATGCAAGATACGGTTGAAGAGAACAAGGTGGTCGCCGATGGCGCTATCGTGGGTGCCTCAGAGGAGGAGCCAGCCGAACGTGGCAAGAGCGTTGCGATGTTTGAGTGCAACATCTGCTTCGAGATGGCTTCCGAGCCTGTGGTAACTTCGTGTGGACATCTCTTCTGCTGGCCTTGTTTGTACCAATGGCTGCATGTCCACTCAACTCACAAGGAGTGCCCTGTCTGCAAAGGCGAGGTCACTGAAGGGAACATCACTCCAATTTAC GGGAGAGGGAATTCGACTTCGGACGCGGAAAAGAAGGTTGCGGAGGAGGG AAATGTATCAGGCCCTACAATCCCACCAAGGCCACATGGCAATCGGCTCGAGAGCTTCCGGCAGAAATTCCACCATTTGCGCCCGATTTCTAGAAGGCTTGGCGAGGCACATGGGATATTGTCTTCTTGGAGGCGCATACTTGATCAGCAGATTATGAATAGTGTGAGTAGGTTTGAGGGGCCTCCTGAATCAACTGTCCAGGAAATGATTGATCATGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU062731             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GCAAGATACGGTTGAAGAGAACAAGGTGGTCGCCGATGGCGCTATCGTGGGTGCCTCANAGGAGGAGCCAGCCGAACGTGGCAAGAGCGTTGCGATGTTTGAGTGCAACATCTGCTTCGAGATGGCTTCCGAGCCTGTGGTAACTTCGTGTGGACATCTCTTCTGCTGGCCTTGTTTGTACCAATGGCTGCATGTCCACTCAACTCACAAGGAGTGCCCTNTCTGCAAAGGCGAGGTCACTGAAGGGAACATCACTCCAATTTACGGGGAGAGGGAATTCGACTTCGGACGCGGAAAAGAAGGTTNCGGAGGAGGGAAAATGTATCAGGCCCTACAATCCCACCAAGGNCACAa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CA765408             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GTCTTCTTGGAGGCGCATACTTGATCAGCAGATTATGAATAGTGTGAGTAGGTTTGAGGGGCCTCCTGAATCAACTGTCCAGGAAATGATTGATCATGCTCATCATGCTAGCCGTTTAGGTCGAATTACTACTAGAATGAGGGCAAGGAGGTTGCAGAGGGAAGCCGAAAACTCTACATTTGTTGCTTCTTCTGCTGCGGAGAGTGGGCTGCCAGCAAACAGCACATCGGATCTGCCTAGGCGTAGCTCAAGTCCATTTTCCTCGGAAAGAATTGATTTATTGCAACACTTTGTTGACCTTGCAAGCACGGAAAGATTGGCAAGCGCTGTGAGTGACCTTAGAAGAATGGTTAGGCCGAGCCCTTATGGAGCATCAACTTCATCAAATCCACCAAATCCACCAAATACCGAGCTGCTGCCAGTTGATGGGAATCATGTTGCCGTTGCACTAGCTGCAGATCAAGCTTCCAATTCAAGCACCATGGCTGTAATTCAGGAGGATGCTGCTTTTACTGAAAGCACAGGGGAACCAAGTAATGCAGGGTCTTCGAGATCCCTGAGGAGGAGAGGAAGAAATGATGCCTTANGTTCTTTGGATGTGGATGGTGCGGGACTACACCGGAACAAGAGAANGCGGCTGAACTGANGCTCTCGGGCTGCAACTGCTCGTCTAATTTTCTTGGTTTGCTGGTCTCAGTTAGCCCTTTTCTCTCTTCGGGGACGTATCTTCTGGGTGGGATATAAAAATCTCTCTTCTACTTGGTTATTAGGGGCTGCTGNGTTCA TTGCAAAGGATTTCTTTCGGAGTCCCGANCTG                                                                                                                                                                ]
[-] EMBL CB665967             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CTCATCATGCTAGCCGTTTAGGTCGAATTACTACTAGAATGAGGGCAAGGAGGTTGCAGAGGGAAGCCGAAAACTCTACATTTGTTGCTTCTTCTGCTGCGGAGAGTGGGCTGCCAGCAAACAGCACATCGGATCTGCCTAGGCGTAGCTCAAGTCCATTTTCCTCGGAAAGAATTGATTTATTGCAACACTTTGTTGACCTTGCAAGCACGGAAAGATTGGCAAGCGCTGTGAGTGACCTTAGAAGAATGGTTAGGCCGAGCCCTTATGGAGCATCAACTTCATCAAATCCACCAAATCCACCAAATACCGAGCTGCTGCCAGTTGATGGGAATCATGTTGCCGTTGCACTAGCTGCAGATCAAGCTTCCAATTCAAGCACCATGGCTGTAATTCAGGAGGATGCTGCTTTTACTGAAAGCACAGGGGAACCAAGTAATGCAGGGTCTTCGAGATCCCTGAGGAGGAGAGGAAGAAATGATGCCTTAGGTTCTTTGGATGTGGATGGTGTGGGACTACACCGGAACAAGAGAAGGCGGCTGAACTGAGGCTCTCGGGCTGCAACTGCTCGTCTAATTTTCTTGGTTTGCTGTTCTCAGTTAGCCCTTTTCTCTCTTCGGGGACGTATCTTCTGGTTGTGATATAAAATTCTCTCTTCTACTTGTTTATTAGGTGCTGCTGAGTTCA TTGCAAATGTATTCCTTCGGAGTCCCGACCTGTTTAATTTATATGCTTTTCCACGAGGCATGTATACTAAGGAAAGTGAGGGATTGTCATCAGGTGAATTTACTGGATTGTAAATTGCCTATGCAAATGTATTAGATGGAAATGATCTTGAGGTCAAATAATACATTGACAC                    ]
[-] EMBL CB646452             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                AGCACATCGGATCTGCCTAGGCGTAGCTCAAGTCCATTTTCCTCGGAAAGAATTGATTTATTGCAACACTTTGTTGACCTTGCAAGCACGGAAAGATTGGCAAGCGCTGTGAGTGACCTTAGAAGAATGGTTAGGCCGAGCCCTTATGGAGCATCAACTTCATCAAATCCACCAAATCCACCAAATACCGAGCTGCTGCCAGTTGATGGGAATCATGTTGCCGTTGCACTAGCTGCAGATCAAGCTTCCAATTCAAGCACCATGGCTGTAATTCAGGAGGATGCTGCTTTTACTGAAAGCACAGGGGAACCAAGTAATGCAGGGTCTTCGAGATCCCTGAGGAGGAGAGGAAGAAATGATGCCTTAGGTTCTTTGGATGTGGATGGTGTGGGACTACACCGGAACAAGAGAAGGCGGCTGAACTGAGGCTCTCGGGCTGCAACTGCTCGTCTAATTTTCTTGGTTTGCTGTTCTCAGTTAGCCCTTTTCTCTCTTCGGGGACGTATCTTCTGGTTGTGATATAAAATTCTCTCTTCTACTTGTTTATTAGGTGCTGCTGAGTTCA TTGCAAATGTATTCCTTCGGAGTCCCGACCTGTTTAATTTATATGCTTTTCCACGAGGCATGTATACTAAGGAAAGTGAGGGATTGTCATCAGGTGAATTTACTGGATTGTAAATTGCCTATGCAAATGTATTAGATGGAAATGATCTTGGGGTCAAATAATACATTGACACCTGAATCTCAAAAAAAAAG ]
[-] EMBL CB665921             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CACATCGGATCTGCCTAGGCGTAGCTCAAGTCCATTTTCCTCGGAAAGAATTGATTTATTGCAACACTTTGTTGACCTTGCAAGCACGGAAAGATTGGCAAGCGCTGTGAGTGACCTTAGAAGAATGGTTAGGCCGAGCCCTTATGGAGCATCAACTTCATCAAATCCACCAAATCCACCAAATACCGAGCTGCTGCCAGTTGATGGGAATCATGTTGCCGTTGCACTAGCTGCAGATCAAGCTTCCAATTCAAGCACCATGGCTGTAATTCAGGAGGATGCTGCTTTTACTGAAAGCACAGGGGAACCAAGTAATGCAGGGTCTTCGAGATCCCTGAGGAGGAGAGGAAGAAATGATGCCTTAGGTTCTTTGGATGTGGATGGTGTGGGACTACACCGGAACAAGAGAAGGCGGCTGAACTGAGGCTCTCGGGCTGCAACTGCTCGTCTAATTTTCTTGGTTTGCTGTTCTCAGTTAGCCCTTTTCTCTCTTCGGGGACGTATCTTCTGGTTGTGATATAAAATTCTCTCTTCTACTTGTTTATTAGGTGCTGCTGAGTTCA TTGCAAATGTATTCCTTCGGAGTCCCGACCTGTTTAATTTATATGCTTTTCCACGAGGCATGTATACTAAGGAAAGTGAGGGATTGTCATCAGGTGAATTTACTGGATTGTAAATTGCCTATGCAAATGTATTAGATGGAAATGATATGGAGGTCAAATAATACATTGACACCTGAATCTCAAAAAAAAGGA]
[-] EMBL CB637343             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ACTTCATCAAATCCACCAAATCCACCAAATACCGAGCTGCTGCCAGTTGATGGGAATCATGTTGCCGTTGCACTAGCTGCAGATCAAGCTTCCAATTCAAGCACCATGGCTGTAATTCAGGAGGATGCTGCTTTTACTGAAAGCACAGGGGAACCAAGTAATGCAGGGTCTTCGAGATCCCTGAGGAGGAGAGGAAGAAATGATGCCTTAGGTTCTTTGGATGTGGATGGTGTGGGACTACACCGGAACAAGAGAAGGCGGCTGAACTGAGGCTCTCGGGCTGCAACTGCTCGTCTAATTTTCTTGGTTTGCTGTTCTCAGTTAGCCCTTTTCTCTCTTCGGGGACGTATCTTCTGGTTGTGATATAAAATTCTCTCTTCTACTTGTTTATTAGGTGCTGCTGAGTTCA TTGCAAATGTATTCCTTCGGAGTCCCGACCTGTTTAATTTATATGCTTTTCCACGAGGCATGTATACTAAGGAAAGTGAGGGATTGTCATCAGGTGAATTTACTGGATTGTAAATTGCCTATGCAAATGTATTAGATGGAAATG TTTTGAGGTCAAATAATACAT                          ]
[+] EMBL AU100769             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      AAATACCGAGCTGCTGCCAGTTGATGGGAATCATGTTGCCGTTGCACTAGCTGCAGATCAAGCTTCCAATTCAAGCACCATGGCTGTAATTCAGGAGGATGCTGCTTTTACTGAAAGCACAGGGGAACCAAGTAATGCAGGGTCTTCGAGATCCCTGAGGAGGAGAGGAAGAAATGATGCCTTAGGTTCTTTGGATGTGGATGGTGTGGGACTACACCGGAACAAGAGAAGGCGGCTGAACTGAGGCTCTCGGGCTGCAACTGCTCGTCTAATTTTCTTGGTTTGCTGTTCTCAGTTAGCCCTTTTCTCTCTTCGGGGACGTATCTTCTGGTTGTGATATAAAATTCTCTCTTCTACTTGTTTATTAGGTGCTGCTGAGTTCA TTGCAAATGTATTCCTTCGGAGTCCCGACCTGTTTAATTTATATGCTTTTCCACGAGGCATGTATACTAAGGAAAGTGAGGGATTGTCATCAGGTGAATTTACTGGATTGTAAATTGCCTATGCAAATGTATTAGATGGAAATGATCTTGAGGTCAAATAATACATTGACACCTGAATCTCAAAAAAAAA  ]
[+] EMBL BI811172             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CCTCAGGAGGAGAGGAAGAAATGATGCCTTAGGTTCTTTGGATGTGGATGGTGTGGGACTACACCGG ACCAGAGAA GCGGCTGAACTGAGGCTCTCGGGCTGCAACTGCTCGTCTAATTTTCTTGGTTTGCTGTTCTCAGTTAGCCCCTTTCTCTCTTCGGGGACGTATCTTCTGGTTGTGATATAAAATTCTCTCTTCTACTTGTTTATTAGGTGCTGCTGAGTTCACTTGCCAATGTATTCCTTCGGAGTCCCGACCTGTTTAATTTATATGCTTTTCCCCGAGGCATGTATACTAAGGAAAGTGAGGGATTGTCATCAGGTGAATTTACTGGATTGTAAATTGCCTATGCCAATGTATTAGATGGAAATGATCTTGAGGTCCAATAATACCTTGACCCCTGAA    AAAAAAAA   ]


>consensus_14102#0 CGTAATCCTAAATTAATTGACCNCGCATTAAATGGATTAAACGAAGATCCCCCACTGTCC CCTGTCTACTATCCAACGAAACCACAAGCNAAGGGAACGGNCTTGNCGGAATCAAGCGGG GAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGT AGGATAAGTGGGAGCCCTCGGGCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACT TATTCCGTGAGTCGGAAGCGGGGCCTGGCCCCTCCTTTTGGCTCTANNGCCCGAGTCCCT CGGGCCGATCCGGGCGGAAGACATTGTCAGGTGGGGAGTTTGGCTGGGGCGGNACATCTG TTNAAAGATAACGCAGGTGTCCTAAGATGAGCTCAACGAGAACAGAAATCTCGTGTGGAA CAAAAGGGTAAAAGCTCGGAGGCCCCTGCCCTGGAGAACGACGCTGCAGCACAACCGCCA CCGCAAGAGCCTATGCAAGATACGGTTGAAGAGAACAAGGTGGTCGCCGATGGCGCTATC GTGGGTGCCTCAGAGGAGGAGCCAGCCGAACGTGGCAAGAGCGTTGCGATGTTTGAGTGC AACATCTGCTTCGAGATGGCTTCCGAGCCTGTGGTAACTTCGTGTGGACATCTCTTCTGC TGGCCTTGTTTGTACCAATGGCTGCATGTCCACTCAACTCACAAGGAGTGCCCTGTCTGC AAAGGCGAGGTCACTGAAGGGAACATCACTCCAATTTACGGGAGAGGGAATTCGACTTCG GACGCGGAAAAGAAGGTTGCGGAGGAGGGAAATGTATCAGGCCCTACAATCCCACCAAGG CCACATGGCAATCGGCTCGAGAGCTTCCGGCAGAAATTCCACCATTTGCGCCCGATTTCT AGAAGGCTTGGCGAGGCACATGGGATATTGTCTTCTTGGAGGCGCATACTTGATCAGCAG ATTATGAATAGTGTGAGTAGGTTTGAGGGGCCTCCTGAATCAACTGTCCAGGAAATGATT GATCATGCTCATCATGCTAGCCGTTTAGGTCGAATTACTACTAGAATGAGGGCAAGGAGG TTGCAGAGGGAAGCCGAAAACTCTACATTTGTTGCTTCTTCTGCTGCGGAGAGTGGGCTG CCAGCAAACAGCACATCGGATCTGCCTAGGCGTAGCTCAAGTCCATTTTCCTCGGAAAGA ATTGATTTATTGCAACACTTTGTTGACCTTGCAAGCACGGAAAGATTGGCAAGCGCTGTG AGTGACCTTAGAAGAATGGTTAGGCCGAGCCCTTATGGAGCATCAACTTCATCAAATCCA CCAAATCCACCAAATACCGAGCTGCTGCCAGTTGATGGGAATCATGTTGCCGTTGCACTA GCTGCAGATCAAGCTTCCAATTCAAGCACCATGGCTGTAATTCAGGAGGATGCTGCTTTT ACTGAAAGCACAGGGGAACCAAGTAATGCAGGGTCTTCGAGATCCCTGAGGAGGAGAGGA AGAAATGATGCCTTAGGTTCTTTGGATGTGGATGGTGTGGGACTACACCGGAACAAGAGA AGGCGGCTGAACTGAGGCTCTCGGGCTGCAACTGCTCGTCTAATTTTCTTGGTTTGCTGT TCTCAGTTAGCCCTTTTCTCTCTTCGGGGACGTATCTTCTGGTTGTGATATAAAATTCTC TCTTCTACTTGTTTATTAGGTGCTGCTGAGTTCATTGCAAATGTATTCCTTCGGAGTCCC GACCTGTTTAATTTATATGCTTTTCCACGAGGCATGTATACTAAGGAAAGTGAGGGATTG TCATCAGGTGAATTTACTGGATTGTAAATTGCCTATGCAAATGTATTAGATGGAAATGAT CTTGAGGTCAAATAATACATTGACACCTGAATCTCAAAAAAAAAGA



consensusID : consensus_14102#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 747
fasta sequence
                              [AGGGAAGCCGAAAACTCTACATTTGTTGCTTCTTCTGCTGCGGAGAGTGGGCTGCCAGCAAACAGCACATCGGATCTGCCTAGGCGTAGCTCAAGTCCATTTTCCTCGGAAAGAATTGATTTATTGCAACACTTTGTTGACCTTGCAAGCACGGAAAGATTGGCAAGCGCTGTGAGTGACCTTAGAAGAATGGTTAGGCCGAGCCCTTATGGAGCATCAACTTCATCAAATCCACCAAATCCACCAAATACCGAGCTGCTGCCAGTTGATGGGAATCATGTTGCCGTTGCACTAGCTGCAGATCAAGCTTCCAATTCAAGCACCATGGCTGTAATTCAGGAGGATGCTGCTTTTACTGAAAGCACAGGGGAACCAAGTAATGCAGGGTCTTCGAGATCCCTGAGGAGGAGAGGAAGAAATGATGCCTTAGGTTCTTTGGACGTGCATGGCGCGTCACCCCCAGGCCCCAGAGAGGCGGGCGCGGCGTGGGCTATCGGTGCGCAGTTCGTCCTGTGTCGGTATCCGCACGAGGCTGCCACGGAGCCGGCGGGCCTGGCCCTCCTTCCCTCCCTCCCTCCTCATCCTGCAGGCGCCGGGCCTCCTCCGAAACCGCGCCGGCGGGGGAGGCGGTCGCGGTGGGAGTCAGCGGCGGCGCCGGCGGCGAGGGAGGAGTGTGGGGAATCAGGAAAGAGGGGGAAGGCGAAAGGGGGAAGAAGAAACAAAGAAAGAATAGGCAGAAAAGTTCGG]

[-] EMBL CB665966             [AGGGAAGCCGAAAACTCTACATTTGTTGCTTCTTCTGCTGCGGAGAGTGGGCTGCCAGCAAACAGCACATCGGATCTGCCTAGGCGTAGCTCAAGTCCATTTTCCTCGGAAAGAATTGATTTATTGCAACACTTTGTTGACCTTGCAAGCACGGAAAGATTGGCAAGCGCTGTGAGTGACCTTAGAAGAATGGTTAGGCCGAGCCCTTATGGAGCATCAACTTCATCAAATCCACCAAATCCACCAAATACCGAGCTGCTGCCAGTTGATGGGAATCATGTTGCCGTTGCACTAGCTGCAGATCAAGCTTCCAATTCAAGCACCATGGCTGTAATTCAGGAGGATGCTGCTTTTACTGAAAGCACAGGGGAACCAAGTAATGCAGGGTCTTCGAGATCCCTGAGGAGGAGAGGAAGAAATGATGCCTTAGGTTCTTTGGACGTGCATGGCGCGTCACCCCCAGGCCCCAGAGAGGCGGGCGCGGCGTGGGCTATCGGTGCGCAGTTCGTCCTGTGTCGGTATCCGCACGAGGCTGCCACGGAGCCGGCGGGCCTGGCCCTCCTTCCCTCCCTCCCTCCTCATCCTGCAGGCGCCGGGCCTCCTCCGAAACCGCGCCGGCGGGGGAGGCGGTCGCGGTGGGAGTCAGCGGCGGCGCCGGCGGCGAGGGAGGAGTGTGGGGAATCAGGAAAGAGGGGGAAGGCGAAAGGGGGAAGAAGAAACAAAGAAAGAATAGGCAGAAAAGTTCGG]


>consensus_14102#1 AGGGAAGCCGAAAACTCTACATTTGTTGCTTCTTCTGCTGCGGAGAGTGGGCTGCCAGCA AACAGCACATCGGATCTGCCTAGGCGTAGCTCAAGTCCATTTTCCTCGGAAAGAATTGAT TTATTGCAACACTTTGTTGACCTTGCAAGCACGGAAAGATTGGCAAGCGCTGTGAGTGAC CTTAGAAGAATGGTTAGGCCGAGCCCTTATGGAGCATCAACTTCATCAAATCCACCAAAT CCACCAAATACCGAGCTGCTGCCAGTTGATGGGAATCATGTTGCCGTTGCACTAGCTGCA GATCAAGCTTCCAATTCAAGCACCATGGCTGTAATTCAGGAGGATGCTGCTTTTACTGAA AGCACAGGGGAACCAAGTAATGCAGGGTCTTCGAGATCCCTGAGGAGGAGAGGAAGAAAT GATGCCTTAGGTTCTTTGGACGTGCATGGCGCGTCACCCCCAGGCCCCAGAGAGGCGGGC GCGGCGTGGGCTATCGGTGCGCAGTTCGTCCTGTGTCGGTATCCGCACGAGGCTGCCACG GAGCCGGCGGGCCTGGCCCTCCTTCCCTCCCTCCCTCCTCATCCTGCAGGCGCCGGGCCT CCTCCGAAACCGCGCCGGCGGGGGAGGCGGTCGCGGTGGGAGTCAGCGGCGGCGCCGGCG GCGAGGGAGGAGTGTGGGGAATCAGGAAAGAGGGGGAAGGCGAAAGGGGGAAGAAGAAAC AAAGAAAGAATAGGCAGAAAAGTTCGG



consensusID : consensus_14102#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 622
fasta sequence
                              [CCAGTTGATGGGAATCATGTTGCCGTTGCACTAGCTGCAGATCAAGCTTCCAATTCAAGCACCATGGCTGTAATTCAGGAGGATGCTGCTTTTACTGAAAGCACAGGGGAACCAAGTAATGCAGGGTCTTCGAGATCCCTGAGGAGGAGAGGAAGAAATGATGCCTTAGGTTCTTTGGATGTGGATGGTGTGGGACTACACCGGAACAAGAGAAGGCGGCTGAACTGAGGCTCTCGGGCTGCAACTGCTCGTCTAATTTTCTTGGTTTGCTGTTCTCAGTTAGCCCTTTTCTCTCT-TCGGGGACGTATCTTCTGGTTGTGATATAAAATTCTCTCTTCTACTTGTTTATTAGGTGCTGCTGAGTTCATTGCAAATGTATTCCTTCGGAGTCCCGACCTGTTTAATTTATATGCTTTTCCACGAGGCATGTATACTAAGGAAAGTGAGGGATTGTCATCAGGTGAATTTACTGGATTGTAAATTGCCTATGCAAATGTATTAGATGGAAATGATCTTGAGGTCAAATAATACATTGACACCTGAATCTCATTTGTTGATAAAAAAAGATCTTATTGAACACATAAAACTGAGCTAATACAAAGTTAAATTGATCCAAAAAAAA]

[+] EMBL BQ907091             [CCAGTTGATGGGAATCATGTTGCCGTTGCACTAGCTGCAGATCAAGCTTCCAATTCAAGCACCATGGCTGTAATTCAGGAGGATGCTGCTTTTACTGAAAGCACAGGGGAACCAAGTAATGCAGGGTCTTCGAGATCCCTGAGGAGGAGAGGAAGAAATGATGCCTTAGGTTCTTTGGATGTGGATGGTGTGGGACTACACCGGAACAAGAGAAGGCGGCTGAACTGAGGCTCTCGGGCTGCAACTGCTCGTCTAATTTTCTTGGTTTGCTGTTCTCAGTTAGCCCTTTTCTCTCT TCGGGGACGTATCTTCTGGTTGTGATATAAAATTCTCTCTTCTACTTGTTTATTAGGTGCTGCTGAGTTCATTGCAAATGTATTCCTTCGGAGTCCCGACCTGTTTAATTTATATGCTTTTCCACGAGGCATGTATACTAAGGAAAGTGAGGGATTGTCATCAGGTGAATTTACTGGATTGTAAATTGCCTATGCAAATGTATTAGATGGAAATGATCTTGAGGTCAAATAATACATTGACACCTGAATCTCATTTGTTGATAAAAAAA                                                         ]
[+] EMBL BM421226             [                                                                                                 AAAGCACAGGGGAACCAAGTAATGCAGGGTCTTCGAGATCCCTGAGGAGGAGAGGAAGAAATGATGCCTTAGGTTCTTTGGATGTGGATGGTGTGGGACTACACCGGAACAAGAGAAGGCGGCTGAACTGAGGCTCTCGGGCTGCAACTGCTCGTCTAATTTTCTTGGTTTGCTGTTCTCAGTTAGCCCTTTTCTCTCTGTCGGGGACGTATCTTCTGGTTGTGATATAAAATTCTCTCTTCTACTTGTTTATTAGGTGCTGCTGAGTTCATTGCAAATGTATTCCTTCGGAGTCCCGACCTGTTTAATTTATATGCTTTTCCACGAGGCATGTATACTAAGGAAAGTGAGGGATTGTCATCAGGTGAATTTACTGGATTGTAAATTGCCTATGCAAATGTATTAGATGGAAATGATCTTGAGGTCAAATAATACATTGACACCTGAATCTCATTTGTTGATAGCTTCTGATCTTATTGAACACATAAAACTGAGCTAATACAAAGTTAAATTGATCCAAAAAAAA]


>consensus_14102#2 CCAGTTGATGGGAATCATGTTGCCGTTGCACTAGCTGCAGATCAAGCTTCCAATTCAAGC ACCATGGCTGTAATTCAGGAGGATGCTGCTTTTACTGAAAGCACAGGGGAACCAAGTAAT GCAGGGTCTTCGAGATCCCTGAGGAGGAGAGGAAGAAATGATGCCTTAGGTTCTTTGGAT GTGGATGGTGTGGGACTACACCGGAACAAGAGAAGGCGGCTGAACTGAGGCTCTCGGGCT GCAACTGCTCGTCTAATTTTCTTGGTTTGCTGTTCTCAGTTAGCCCTTTTCTCTCTTCGG GGACGTATCTTCTGGTTGTGATATAAAATTCTCTCTTCTACTTGTTTATTAGGTGCTGCT GAGTTCATTGCAAATGTATTCCTTCGGAGTCCCGACCTGTTTAATTTATATGCTTTTCCA CGAGGCATGTATACTAAGGAAAGTGAGGGATTGTCATCAGGTGAATTTACTGGATTGTAA ATTGCCTATGCAAATGTATTAGATGGAAATGATCTTGAGGTCAAATAATACATTGACACC TGAATCTCATTTGTTGATAAAAAAAGATCTTATTGAACACATAAAACTGAGCTAATACAA AGTTAAATTGATCCAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14102#0      CGTAATCCTAAATTAATTGACCNCGCATTAAATGGATTAAACGAAGATCCCCCACTGTCC 60
consensus_14102#2      ------------------------------------------------------------
consensus_14102#1      ------------------------------------------------------------
                                                                                   

consensus_14102#0      CCTGTCTACTATCCAACGAAACCACAAGCNAAGGGAACGGNCTTGNCGGAATCAAGCGGG 120
consensus_14102#2      ------------------------------------------------------------
consensus_14102#1      ------------------------------------------------------------
                                                                                   

consensus_14102#0      GAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGT 180
consensus_14102#2      ------------------------------------------------------------
consensus_14102#1      ------------------------------------------------------------
                                                                                   

consensus_14102#0      AGGATAAGTGGGAGCCCTCGGGCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACT 240
consensus_14102#2      ------------------------------------------------------------
consensus_14102#1      ------------------------------------------------------------
                                                                                   

consensus_14102#0      TATTCCGTGAGTCGGAAGCGGGGCCTGGCCCCTCCTTTTGGCTCTANNGCCCGAGTCCCT 300
consensus_14102#2      ------------------------------------------------------------
consensus_14102#1      ------------------------------------------------------------
                                                                                   

consensus_14102#0      CGGGCCGATCCGGGCGGAAGACATTGTCAGGTGGGGAGTTTGGCTGGGGCGGNACATCTG 360
consensus_14102#2      ------------------------------------------------------------
consensus_14102#1      ------------------------------------------------------------
                                                                                   

consensus_14102#0      TTNAAAGATAACGCAGGTGTCCTAAGATGAGCTCAACGAGAACAGAAATCTCGTGTGGAA 420
consensus_14102#2      ------------------------------------------------------------
consensus_14102#1      ------------------------------------------------------------
                                                                                   

consensus_14102#0      CAAAAGGGTAAAAGCTCGGAGGCCCCTGCCCTGGAGAACGACGCTGCAGCACAACCGCCA 480
consensus_14102#2      ------------------------------------------------------------
consensus_14102#1      ------------------------------------------------------------
                                                                                   

consensus_14102#0      CCGCAAGAGCCTATGCAAGATACGGTTGAAGAGAACAAGGTGGTCGCCGATGGCGCTATC 540
consensus_14102#2      ------------------------------------------------------------
consensus_14102#1      ------------------------------------------------------------
                                                                                   

consensus_14102#0      GTGGGTGCCTCAGAGGAGGAGCCAGCCGAACGTGGCAAGAGCGTTGCGATGTTTGAGTGC 600
consensus_14102#2      ------------------------------------------------------------
consensus_14102#1      ------------------------------------------------------------
                                                                                   

consensus_14102#0      AACATCTGCTTCGAGATGGCTTCCGAGCCTGTGGTAACTTCGTGTGGACATCTCTTCTGC 660
consensus_14102#2      ------------------------------------------------------------
consensus_14102#1      ------------------------------------------------------------
                                                                                   

consensus_14102#0      TGGCCTTGTTTGTACCAATGGCTGCATGTCCACTCAACTCACAAGGAGTGCCCTGTCTGC 720
consensus_14102#2      ------------------------------------------------------------
consensus_14102#1      ------------------------------------------------------------
                                                                                   

consensus_14102#0      AAAGGCGAGGTCACTGAAGGGAACATCACTCCAATTTACGGGAGAGGGAATTCGACTTCG 780
consensus_14102#2      ------------------------------------------------------------
consensus_14102#1      ------------------------------------------------------------
                                                                                   

consensus_14102#0      GACGCGGAAAAGAAGGTTGCGGAGGAGGGAAATGTATCAGGCCCTACAATCCCACCAAGG 840
consensus_14102#2      ------------------------------------------------------------
consensus_14102#1      ------------------------------------------------------------
                                                                                   

consensus_14102#0      CCACATGGCAATCGGCTCGAGAGCTTCCGGCAGAAATTCCACCATTTGCGCCCGATTTCT 900
consensus_14102#2      ------------------------------------------------------------
consensus_14102#1      ------------------------------------------------------------
                                                                                   

consensus_14102#0      AGAAGGCTTGGCGAGGCACATGGGATATTGTCTTCTTGGAGGCGCATACTTGATCAGCAG 960
consensus_14102#2      ------------------------------------------------------------
consensus_14102#1      ------------------------------------------------------------
                                                                                   

consensus_14102#0      ATTATGAATAGTGTGAGTAGGTTTGAGGGGCCTCCTGAATCAACTGTCCAGGAAATGATT 1020
consensus_14102#2      ------------------------------------------------------------
consensus_14102#1      ------------------------------------------------------------
                                                                                   

consensus_14102#0      GATCATGCTCATCATGCTAGCCGTTTAGGTCGAATTACTACTAGAATGAGGGCAAGGAGG 1080
consensus_14102#2      ------------------------------------------------------------
consensus_14102#1      ------------------------------------------------------------
                                                                                   

consensus_14102#0      TTGCAGAGGGAAGCCGAAAACTCTACATTTGTTGCTTCTTCTGCTGCGGAGAGTGGGCTG 1140
consensus_14102#2      ------------------------------------------------------------
consensus_14102#1      ------AGGGAAGCCGAAAACTCTACATTTGTTGCTTCTTCTGCTGCGGAGAGTGGGCTG 54
                                                                                   

consensus_14102#0      CCAGCAAACAGCACATCGGATCTGCCTAGGCGTAGCTCAAGTCCATTTTCCTCGGAAAGA 1200
consensus_14102#2      ------------------------------------------------------------
consensus_14102#1      CCAGCAAACAGCACATCGGATCTGCCTAGGCGTAGCTCAAGTCCATTTTCCTCGGAAAGA 114
                                                                                   

consensus_14102#0      ATTGATTTATTGCAACACTTTGTTGACCTTGCAAGCACGGAAAGATTGGCAAGCGCTGTG 1260
consensus_14102#2      ------------------------------------------------------------
consensus_14102#1      ATTGATTTATTGCAACACTTTGTTGACCTTGCAAGCACGGAAAGATTGGCAAGCGCTGTG 174
                                                                                   

consensus_14102#0      AGTGACCTTAGAAGAATGGTTAGGCCGAGCCCTTATGGAGCATCAACTTCATCAAATCCA 1320
consensus_14102#2      ------------------------------------------------------------
consensus_14102#1      AGTGACCTTAGAAGAATGGTTAGGCCGAGCCCTTATGGAGCATCAACTTCATCAAATCCA 234
                                                                                   

consensus_14102#0      CCAAATCCACCAAATACCGAGCTGCTGCCAGTTGATGGGAATCATGTTGCCGTTGCACTA 1380
consensus_14102#2      ---------------------------CCAGTTGATGGGAATCATGTTGCCGTTGCACTA 33
consensus_14102#1      CCAAATCCACCAAATACCGAGCTGCTGCCAGTTGATGGGAATCATGTTGCCGTTGCACTA 294
                                                  *********************************

consensus_14102#0      GCTGCAGATCAAGCTTCCAATTCAAGCACCATGGCTGTAATTCAGGAGGATGCTGCTTTT 1440
consensus_14102#2      GCTGCAGATCAAGCTTCCAATTCAAGCACCATGGCTGTAATTCAGGAGGATGCTGCTTTT 93
consensus_14102#1      GCTGCAGATCAAGCTTCCAATTCAAGCACCATGGCTGTAATTCAGGAGGATGCTGCTTTT 354
                       ************************************************************

consensus_14102#0      ACTGAAAGCACAGGGGAACCAAGTAATGCAGGGTCTTCGAGATCCCTGAGGAGGAGAGGA 1500
consensus_14102#2      ACTGAAAGCACAGGGGAACCAAGTAATGCAGGGTCTTCGAGATCCCTGAGGAGGAGAGGA 153
consensus_14102#1      ACTGAAAGCACAGGGGAACCAAGTAATGCAGGGTCTTCGAGATCCCTGAGGAGGAGAGGA 414
                       ************************************************************

consensus_14102#0      AGAAATGATGCCTTAGGTTCTTTGGATGTGGATGGTGTGGGACTACACCGGAACAAGAGA 1560
consensus_14102#2      AGAAATGATGCCTTAGGTTCTTTGGATGTGGATGGTGTGGGACTACACCGGAACAAGAGA 213
consensus_14102#1      AGAAATGATGCCTTAGGTTCTTTGGACGTGCATGGCGCGTCACCCC-CAGGCCCCAGAGA 473
                       ************************** *** **** * *  **  * * **  * *****

consensus_14102#0      AGGCGGCTGAACTGAGGCTCTCGGGCTGCAACTGCTCGTCTAATTTTCTTGGTTTGCTGT 1620
consensus_14102#2      AGGCGGCTGAACTGAGGCTCTCGGGCTGCAACTGCTCGTCTAATTTTCTTGGTTTGCTGT 273
consensus_14102#1      GGCGGGCGCGGCGTGGGCTATCGGTGCGCA---GTTCGTCC--------TGTGTCGGTAT 522
                        *  ***    *   **** ****   ***   * *****         **  * * * *

consensus_14102#0      TCTCAGTTAGCCCTTTTCTCTCTTCGGGGACGTATCTTCTGGTTGTGATATAAAATTCTC 1680
consensus_14102#2      TCTCAGTTAGCCCTTTTCTCTCTTCGGGGACGTATCTTCTGGTTGTGATATAAAATTCTC 333
consensus_14102#1      CCGCACGAGGCTG--------CCACGGAGCCGGCGGGCCTGGCCCTCCTTC----CCTCC 570
                        * **    **          *  *** * **      ****   *  *          *

consensus_14102#0      TCTTCTACTTGTTTATTAGGTGCTGCTGAGTTCATTGCAAATGTATTCCTTCGGAGTCCC 1740
consensus_14102#2      TCTTCTACTTGTTTATTAGGTGCTGCTGAGTTCATTGCAAATGTATTCCTTCGGAGTCCC 393
consensus_14102#1      CTCCCTCCTCATCCTGCAGGCGCCGG-GCCTCCTCCGAAACCGCGCCGGCGGGGGAGGCG 629
                           ** **  *     *** ** *  *  * *   * **  *         **    * 

consensus_14102#0      GACCTGTTTAATTTATATGCTTTTCCACGAGGCATGTATACTAAGGAAAGTGAGGGATTG 1800
consensus_14102#2      GACCTGTTTAATTTATATGCTTTTCCACGAGGCATGTATACTAAGGAAAGTGAGGGATTG 453
consensus_14102#1      GTCGCGGTGGGAGTCAGCGGCGGCGCCGGCGGCGAGGG-----AGGAGTGTGGGGAATCA 684
                       * *  * *     *    *      *  * ***  *       ****  *** ** **  

consensus_14102#0      TCATCAGGTGAATTTACTGGATTGTAAATTGCCTATGCAAATGTATTAGATGGAAATGAT 1860
consensus_14102#2      TCATCAGGTGAATTTACTGGATTGTAAATTGCCTATGCAAATGTATTAGATGGAAATGAT 513
consensus_14102#1      GGAAAGAGGGGGAAGGCGAAAGGGGGAAGAAGAAACAAAGAAAGAATAGGCAGAAAAGTT 744
                         *    * *      *   *  *  **      *   * *   * ***   **** * *

consensus_14102#0      CTTGAGGTCAAATAATACATTGACACCTGAATCTCAA--------AAAAAAAGA------ 1906
consensus_14102#2      CTTGAGGTCAAATAATACATTGACACCTGAATCTCATTTGTTGATAAAAAAAGATCTTAT 573
consensus_14102#1      CGG--------------------------------------------------------- 747
                       *                                                           

consensus_14102#0      -------------------------------------------------
consensus_14102#2      TGAACACATAAAACTGAGCTAATACAAAGTTAAATTGATCCAAAAAAAA 622
consensus_14102#1      -------------------------------------------------
                                                                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)