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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14103#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 2094 fasta sequence
[TTTTTGACGACGGTAGTTCATCCGTCCAATGCACAGCTGAGATGCAATTATACATTTACATGTGCAAATGACCGACAAGATTAACGCTACACAAACAGAATGGTAAAACCATCACAATTCAAGATCACGAACACAATGATCAGATC-AAATTGCGATTTTCAAAACCAACTCCAGTGGAGTGAGTTTGCATGGACCATGGATTACTAG-CCATCCACATTCCTCGTATTATTTTTGCACAACCAACTATGCAAAGAGGGATTTACTGTGAGGGAATGGAGCCAGTCCTGTAGGGAGATGGCCCATTCGACATTTACAGAGGAAGCGGCGAATGAAGATTGCAGTGATCACGGCCGATCACCAAA--AGAACTTATACAATCTTTTCTTTCCCCTAGGATTGTATAGTTAGAGCTTGTTAGGATTTCTGAAGGGTCGAGAAGATACATCTTCATCTAGCTCTAATCGCTGTTGGTATTAGAGTCTTGACTGGCTTGGGGCTGCGCTGCAGGTAGGTAGGACCAGGCAATGGCTGCTGTGCCAAGGGTAACTGCAAGCCCAACCGAGCCCCAGAACCACTTCTGTCTCTTCTTTCGGATATTTCGTTGTTGCCTCGACATCTCGATAGCCTCTTGGTTTCTTTGAGACATCTCCCTGTTTGCAGCTTCATAGTACTGGACCCTATCGGATAGCCTTGCAATCTCGAAGTTCTTTGCTGCAATCTTAGTTTCCATATCTGTCTCAACTTCTGCACGAGCAAATCCCCGTGCAATAGCAGCAGCCACAAGTTGTGAAACAGTTATTTGTTGGCACAACTCAGCTCCAGGATCCATGCTTGAATCATCAGTGTCCTCAGCTAAACTTGGAGGTGGAAGTGTCAAGGCAATAAGTGATAGGTGATCACTCAGCTTCTTCCACTCCTTTTGCCAGTTCTCAAGTGCTTCCTCAGCTTGCTTCCTTCTCTCAATTTCCATCAACAGACTCAACCTCATTTCACGAAGGTCATCATCCATGCATTGTGAAGATCGAGTTGCACCATCACTGGATATTTCTTCGAATGCATCATAAAATTCTGCACCAGGTGTGCCAACAGATGTCCCAAGAGGGGAACTAGGCTTCCACCACCGCTCATGCCCACCAGCATCCTCCGCCTCAGAGTTACTAGCCATGCTCAGTGAATCCTGAAGCTCAAAGAAGGCATCATTGTTGATTTTCCTTGGTGTTCCACCATTGGCAGGCCTTCCAACATTGACAGGCCTCACTGTCGCATCAGGATTTCCATGCTGAAACTCGAACTCAGCCTGATCATGCCCATATTCGCGTGAAACAGTGCCCTTGCCCTTCTGTAGCATTCCATTCTGCCAGTCGAGGGTCTCCACCACACCACTGTCACCTTCAAGTACACCATTGCTTGCTTGCTGAAACTCAAACTCAGGTTCCTGCGCTTCAAAGGATTGACTTCTTTTCGGCAAAGGAGGCAGCGTCACAGAGAGCGTGGGCTGCTGGCTACCATCACTACCAACATCCCCCTGGGAAAGTGTCTTCACCAAGCAGGGTCCCCTCCTTTTATGGTTGATGAGGTACGGTGACCAGGTTCCTGGGAACGACGAAGGCGAATCCGGCAGTGATGTGCTCTCAGGCGTGGCGTACAGCGTCGCCGACGCAGTCTGCGCTCTCCTGACAGGAGCCACCGGCACAGGTATCGGCTTCTCGGCGGCCTTCTCCTGAGGAAGGGGAGGAGCTGGAGGCGGCTTGGAAGCAGCCTTCTGGGACTGTGTAGCTGACC-CGGTCTCC-AGTAACGGGTC-CAGCACGTAGTGCGTGATGGTCGGCATGGTGATGCGGCTGCCGGAATCAGAGGGAGATCACCGGAGATTTCGACTTCCTGGCATCAACGGCGGCGCCCAGCCACCTGCCCCCGGCGGCGCGCGCGCGCGCGTGCGATGCGAGCGGCGCCTCCACCTCGCGCGGGTCGCGTCGCTGCGAGGAAACCCTAGCCGCCGTGTCGCGCCCCCCGCCGCCGCCGCCGTCTCTTCCTCCTATCGCGTTTCGAATTTTATGTGCGGGACACAACAAAAAAAAATAAATAAGCGGCGCGAGACG]
[-] EMBL BI797793 [TTTTTGACGACGGTAGTTCATCCGTCCAATGCACAGCTGAGATGCAATTATACATTTACATGTGCAAATGACCGACAAGATTAACGCTACACAAACAGAATGGTAAAACCATCACAATTCAAGATCACGAACACAATGATCAGATC AAAATGCGATTTTCAAAACCAACTCCAGTGGAGTGAGTTTGCATGGACCATGGATTACTAG CCATCCACATTCCTCGTATTATTTTTGCACAACCAACTATGCAAAGAGGGATTTACTGTGAGGGAATGGAGCCAGTCCTGTAAGGAGATGGCCCATTCGACATTTACAGAGGAAGCGGCGAATGAAGATTGCAGTGATCACGG CGATCACCAAAAGAGAACTTATACAATCTTTTCTTTCCTCTAGGATTGTATAGTTAGAGCTTGTTAGGATTTCTGAAGGGTCGAGAAGATACATCTTCATCTAGCTCTAATCGCTG TGGTATTAGAGTCTTGACTGGCTTGGGGCTGCGCTGCAGGTAGGTAGGACCAGGCAATGGCTGCTGTGCCAAGGGTAACTGCAAGCCCAA CGAGCCCCAGAA CA TTCTGTCTCTTCTTTCGG ]
[-] EMBL AU100972 [ tTTCAAGATCACGAACACAATGATCAGATCAAAATTGCGATTTTCAAAACCAACTCCAGTGGAGTGAGTNTGCATGGACCATGGATTACTAG CCATCCACATTCCTCGTATTATTTTTGCACAACCAACTATGCAAAGAGGGATTTACTGTGAGGGAATGGAGCCAGTCCTGTAGGGAGATGGCCCATTCGACATNTACAGAGGAAGCGGCGAATGAAGATTGCAGTGATCACGGCCGATCACCAAA AGAACTTATACAATCTTTTCTTTCCCCTAGGATTGTATAGTTAGAGCTTGTTAGGATTTCTGAAGGGTCGAGAAGATACATCTTC ]
[+] EMBL CB679307 [ ATC AAATTGCGATTTTCAAAACCAACTCCAGCGTAGTGAGTTTGCATGGACCATGGATTACTAG CCATCCACATTCCTCGTATTATTTTTGCACAACCAACTATGCAAAGAGGGATTTACTGTGAGGGAATGGAGCCAGTCCTGTAGGGAGATGGCCCATTCGACATTTACAGAGGAAGCGGCGAATGAAGATTGCAGTGATCACGGCCGATCACCAAA AGAACTTATACAATCTTTTCTTTCCCCTAGGATTGTATAGTTAGAGCTTGTTAGGATTTCTGAAGGGTCGAGAAGATACATCTTCATCTAGCTCTAATCGCTGTTGGTATTAGAGTCTTGACTGGCTTGGGGCTGCGCTGCAGGTAGGTAGGACCAGGCAATGGCTGCTGTGCCAAGGGTAACTGCAAGCCCAACCGAGCCCCAGAACCACTTCTGTCTCTTCTTTCGGATATTTCGTTGTTGCCTCGACATCTCGATAGCCTCTTGGTTTCTTTGAGACATCTCCCTGTTTGCAGCTTCATAGTACTGGACCCTATCGGATAGCCTTGCAATCTCGAAGTTCTTTGCTGCAATCTTAGTTTCCATATCTGTCTCAACTTCTGCACGAGCAAATCCCCGTGCAATAGCAGCAGCCACAAGTTGTGAAACAGTTATTTGTTGGCACAACTCAGCTCCAGGATCCATGCTTGAATCATCAGTGTCCTCAGCTAAACTTGGAGGTGGAAGTGTCAAGGCAATAAGTGATAGGTGATCACTCAGCTTCTTCCACTCCTTTTGCCAGTTCTCAAGTGCTTCCTCAGCTTGCTTCCTTC ]
[+] EMBL CB661238 [ TTGCGATTTTCAAAACCAACTCCCTTGGAGTGAGTTTGCATGGACCATGGATTACTAA CCATCCACATTCCTCGTATTATTTTTGCACAACCAACTATGCAAAGAGGGATTTACTGTGAGGGAATGGAGCCAGTCCTGTAAGGAGATGGCCCATTCGACATTTACAGAGGAAGCGGCGAATGAAGATTGCAGTGATCACGGCCGATCACCAAA AGAACTTATACAATCTTTTCTTTCCCCTAGGATTGTATAGTTAGAGCTTGTTAGGATTTCTGAAGGGTCAAGAAGATACATCTTCATCTAGCTCTAATCGCTGTTGGTATTAGAGTCTTGACTGGCTTGGGGCTGCGCTGCAGGTAGGTAGGACCAGGCAATGGCTGCTGTGCCAAGGGTAACTGCAAGCCCAACCGAGCCCCAGAACCACTTCTGTCTCTTCTTTCGGATATTTCGTTGTTGCCTCGACATCTCGATAGCCTCTTGGTTTCTTTGAGACATCTCCCTGTTTGCAGCTTCATAGTACTGGACCCTATCGGATAGCCTTGCAATCTCGAAGTTCTTTGCTGCAATCTTAGTTTCCATATCTGTCTCAACTTCTGCACGAGCAAATCCCCGTGCAATAGCAGCAGCCACAAGTTGTGAAACAGTTATTTGTTGGCACAACTCAGCTCCAGGATCCATGCTTGAATCATCAGTGTCCTCAGCTAAACTTGGAGGTGGAAGTGTCAAGGCAATAAGTGATAGGTGATCACTCAGCTTCTTCCACTC ]
[-] EMBL CF304435 [ AGTTTGCATGGACCATGGA TACTAGCCCATCCACATTCCTCGTATTATTTTTGCACAACCAACTATGCAAAGAGGGATTTACTGTGAGGGAATGGAGCCAGTCCTGTAGGGAGATGGCCCATTCGACATTTACAGAGGAAGCGGCGAATGAAGATTGCAGTGATCACGGCCGATCACCAAA AGAACTTATACAATCTTTTCTTTCCCCTAGGATTGTATAGTTAGAGCTTGTTAGGATTTCTGAAGGGTCGAGAAGATACATCTTCATCTAGCTCTAATCGCTGTTGGTATTAGAGTCTTGACTGGCTTGGGGCTGCGCTGCAGGTAGGTAGGACCAGGCAATGGCTGCTGTGCCAAGGGTAACTGCAAGCCCAACCGAGCCCCAGAACCACTTCTGTCTCTTCTTTCGGATATTTCGTTGTTGCCTCGACATCTCGATAGCCTCTTGGTTTCTTTGAGACATCTCCCTGTTTGCAGCTTCATAGTACTGGACCCTATCGGATAGCCTTGCAATCTCGAAGTTCTTTGCTGCAATCTTAGTTTCCATATCTGTCTCAACTTCTGCACGAGCAAATCCCCGTGCAATAGCAGCAGCCACAAGTTGT AAACA ]
[-] EMBL CB661237 [ TAGCCTCTTGGTTTCTTTGAGACATCTCCCTGTTTGCAGCTTCATAGTACTGGACCCTATCGGATAGCCTTGCAATCTCGAAGTTCTTTGCTGCAATCTTAGTTTCCATATCTGTCTCAACTTCTGCACGAGCAAATCCCCGTGCAATAGCAGCAGCCACAAGTTGTGAAACAGTTATTTGTTGGCACAACTCAGCTCCAGGATCCATGCTTGAATCATCAGTGTCCTCAGCTAAACTTGGAGGTGGAAGTGTCAAGGCAATAAGTGATAGGTGATCACTCAGCTTCTTCCACTCCTTTTGCCAGTTCTCAAGTGCTTCCTCAGCTTGCTTCCTTCTCTCAATTTCCATCAACAGACTCAACCTCATTTCACGAAGGTCATCATCCATGCATTGTGAAGATCGAGTTGCACCATCACTGGATATTTCTTCGAATGCATCATAAAATTCTGCACCAGGTGTGCCAACAGATGTCCCAAGAGGGGAACTAGGCTTCCACCACCGCTCATGCCCACCAGCATCCTCCGCCTCAGAGTTACTAGCCATGCTCAGTGAATCCTGAAGCTCAAAGAAGGCATCATTGTTGATTTTCCTTGGTGTTCCACCATTGGCAGGCCTTCCAACATTGACAGGCCTCACTGTCGCATCAGGATTTCCATGCTGAAACTCGAACTCAGCCTGATCATGCCCATATTCGCCTGAAACAGTGCCCTTGCCCTTCTGTAGCATTCCATTCTGCCAGTCGAGGGTCTCCACCACACCACTGTC ]
[-] EMBL D43580 [ TCCAGGATCCATGCTTGAATCATCAGTGTCCTCAGCTAAACTTGGAGGTGGAAGTGTCAAGGCAATAAGTGATAGGTGATCACTCAGCTTCTTCCACTCCTTTTGCCAGTTCTCAAGTGCTTCCTCAGCTTGCTTCCTTCTCTCAATTTCCATCAACAGACTCAACCTCATTTCACGAAGGTCATCATCCATGCATTGTGAAGATCGAGTTGCACCATCACTGGATATTTCTTCGAATGCATCATAAAATTCTGCACCAGGTGTGCCAACAG ]
[-] EMBL CB679306 [ ATTCGCGTGAAACAGTGCCCTTGCCCTTCTGTAGCATTCCATTCTGCCAGTCGAGGGTCTCCACCACACCACTGTCACCTTCAAGTACACCATTGCTTGCTTGCTGAAACTCAAACTCAGGTTCCTGCGCTTCAAAGGATTGACTTCTTTTCGGCAAAGGAGGCAGCGTCACAGAGAGCGTGGGCTGCTGGCTACCATCACTACCAACATCCCCCTGGGAAAGTGTCTTCACCAAGCAGGGTCCCCTCCTTTTATGGTTGATGAGGTACGGTGACCAGGTTCCTGGGAACGACGAAGGCGAATCCGGCAGTGATGTGCTCTCAGGCGTGGCGTACAGCGTCGCCGACGCAGTCTGCGCTCTCCTGACAGGAGCCACCGGCACAGGTATCGGCTTCTCGGCGGCCTTCTCCTGAGGAAGGGGAGGAGCTGGAGGCGGCTTGGAAGCAGCCTTCTGGGACTGTGTAGCTGACC CGGTCTCC AGTAACGGGTC CAGCACGTAGTGCGTGATGGTCGGCATGGTGATGCGGCTGCCGGAATCAGAGGGAGATCACCGGAGATTTCGACTTCCTGGCATCAACGGCGGCGCCCAGCCACCTGCCCCCGGCGGCGCGCGCGCGCGCGTGCGATGCGAGCGGCGCCTCCACCTCGCGCGGGTCGCGTCGCTGCGAGGAAACCCTAGCCGCCGTGTCGCGCCCCCCGCCGCCGCCGCCGTCTCTTCCTCCTATCGCGTTTGGAATTTTATGTGCGGGACACAACAAAAAAAAATAAATAAGCGGCGC ]
[-] EMBL CB680637 [ TCGCGTGAAACAGTGCCCTTGCCCTTCTGTAGCATTCCATTCTGCCAGTCGAGGGTCTCCACCACACCACTGTCACCTTCAAGTACACCATTGCTTGCTTGCTGAAACTCAAACTCAGGTTCCTGCGCTTCAAAGGATTGACTTCTTTTCGGCAAAGGAGGCAGCGTCACAGAGAGCGTGGGCTGCTGGCTACCATCACTACCAACATCCCCCTGGGAAAGTGTCTTCACCAAGCAGGGTCCCCTCCTTTTATGGTTGATGAGGTACGGTGACCAGGTTCCTGGGAACGACGAAGGCGAATCCGGCAGTGATGTGCTCTCAGGCGTGGCGTACAGCGTCGCCGACGCAGTCTGCGCTCTCCTGACAGGAGCCACCGGCACAGGTATCGGCTTCTCGGCGGCCTTCTCCTGAGGAAGGGGAGGAGCTGGAGGCGGCTTGGAAGCAGCCTTCTGGGACTGTGTAGCTGACC CGGTCTCC AGTAACGGGTC CAGCACGTAGTGCGTGATGGTCGGCATGGTGATGCGGCTGCCGGAATCAGAGGGAGATCACCGGAGATTTCGACTTCCTGGCATCAACGGCGGCGCCCAGCCACCTGCCCCCGGCGGCGCGCGCGCGCGCGTGCGATGCGAGCGGCGCCTCCACCTCGCGCGGGTCGCGTCGCTGCGAGGAAACCCTAGCCGCCGTGTCGCGCCCCCCGCCGCCGCCGCCGTCTCTTCCTCCTATCGCGTTTCGAATTTTATGTGCGGGACACAACAAAAAAAAATAAATAAGCGGCGC ]
[-] EMBL CF306814 [ CATTCTGCCAGTCGAGGGTCTCCACCACACCACTGTCACCTTCAAGTACACCATTGCTTGCTTGCTGAAACTCAAACTCAGGTTCCTGCGCTTCAAAGGATTGACTTCTTTTCGGCAAAGGAGGCAGCGTCACAGAGAGCGTGGGCTGCTGGCTACCATCACTACCAACATCCCCCTGGGAAAGTGTCTTCACCAAGCAGGGTCCCCTCCTTTTATGGTTGATGAGGTACGGTGACCAGGTTCCTGGGAACGACGAAGGCGAATCCGGCAGTGATGTGCTCTCAGGCGTGGCGTACAGCGTCGCCGACGCAGTCTGCGCTCTCCTGACAGGAGCCACCGGCACAGGTATCGGCTTCTCGGCGGCCTTCTCCTGAGGAAGGGGAGGAGCTGGAGGCGGCTTGGAAGCAGCCTTCTGGGACTGTGTAGCTGACC CGGTCTCC AGTAACGGGTC CAGCACGTAGTGCGTGATGGTCGGCATGGTGATGCGGCTGCCGGAATCAGAGGGAGATCACCGGAGATTTCGA ]
[-] EMBL CB618719 [ ATTCTGCCAGTCGAGGGTCTCCACCACACCACTGTCACCTTCAAGTACACCATTGCTTGCTTGCTGAAACTCAAACTCAGGTTCTTGCGCTTCAAAGGATTGACTTCTTTTCGGCAAAGGAGGCAGCGTCACAGAGAGCGTGGGCTGCTGGCTACCATCACTACCAACATCCCCCTGGGAAAGTGTCTTCACCAAGCAGGGTCCCCTCCTTTTATGGTTGATGAGGTACGGTGACCAGGTTCCTGGGAACGACGAAGGCGAATCCGGCAGTGATGTGCTCTCAGGCGTGGCGTACAGCGTCGCCGACGCAGTCTGCGCTCTCCTGACAGGAGCCACCGGCACAGGTATCGGCTTCTCGGCGGCCTTCTCCTGAGGAAGGGGAGGAGCTGGAGGCGGCTTGGAAGCAGCCTTCTGGGACTGTGTAGCTGACC CGGTCTCC AGTAACGGGTC CAGCACGTAGTGCGTGATGGTCGGCATGGTGATGCGGCTGCCGGAATCAGAGGGAGATCACCGGAGATTTCGACTTCCTGGCATCAACGGCGGCGCCCAGCCACCTG CCCCGGCGGCGCGCGCGCGCGCGTGCGATGCGAGCGGCGCCTCCACCTCGCGCGGGTCGCGTCGCTGCGAGGAAACCCTAGCCGCCGTGTCGCGCCCCGCGCCGCCGCCGCCGTCTCTTCCTCCTATCGCGTTTCGAAT ]
[-] EMBL C28854 [ GCCTTCTGGGACTGTGTAGCTGACCNCGGTCTCCAAGTAACGGGTCNCAANACGTAGTGCGTGATGGTCGGCATGGTGATGCGNCTGCCGGAATCAGAGGGAGATCACCGGAGATTTCGACTTCCTGGCATCAACGGCGGCGCCCAGCCACCTGCCCCCGGNAG NCCCGCGCGCGCGTGCGATGCGAGCGGCGCCTCCACCTCGCGCGGGTCGCGTCGCTGCGAGGAAACCCTAGCCGCCGTGTCGCGCCCCCCGCCGCCGCCGC ]
[-] EMBL OSC109271 [ TGACC CGGTCTCC AGTAACGGGTC CAAGACGTAGTGCGTGATGGTCGGCATGGTGATGCGGCTGCCGGAATCAGAGGGAGATCACCGGAGATTTCGACTTCCTGGCATCAACGGCGGCGCCCAGCCACCTGCCCCCGGCNG GGGCGCGCGCGCGTGCGATGCGAGCGGCGCCTCCACCTCGCGCGGGTCGCGTCGCTGCGAGGAAACCCTAGCCGCCGTGTCGCGCCCCCCGCCGCCGCCGCCGTCTCTTCCTCCTATCGCGTTTCGAATTTTATGTGCGGGACACAACAAAAAAAAATAAATAAGCGGCGCGAGACG]
consensusID : consensus_14103#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 703 fasta sequence
[TCTTTTTTTTAACGCTACACAAACAGAATGGTAAAACCATCACAATTCAAGATCACGAACACAATGATCAGATCAAAATTGCGATTTTCAAAACCAACTCCAGTGGAGTGAGTTTGCATGGACCATGGATTACTAGCCATCCACATTCCTCGTATTATTTTTGCACAACCAACTATGCAAAGAGGGATTTACTGTGAGGGAATGGAGCCAGTCCTGTAAGGAGATGGCCCATTCGACATTTACAGAGGAAGCGGCGAATGAAGATTGCAGTGATCACGGCCGATCACCAAAAGAGAACTTATACAATCTTTTCTTTCCTCTAGGATTGTATAGTTAGAGCTTGTTAGGATTTCTGAAGGGTCGAGAAGATACATCTTCATCTAGCTCTAATCGCTGTTGGTATTAGAGTCTTGACTGGCTTGGGGCTGCGCTGCAGGTAGGTAGGACCAGGCAATGGCTGCTGTGCCAAGGGTAACTGCAAGCCCAACCGAGACCCAGAACCACTTCTGTCTCTTCTTTCGGATATTTCGTTGTTGCCTCGACATCTCTGCAAGACATTAGGAAAGGAATTCACTCATCAATTACATGATTATTTGCAATATACTACCAACTAATGTTTCTGATACAAAGCAGTTAATGGCAAAAGATGTAAAAATATTATAACTATAACAATGCATTTCATATCAGTCTGAATTTAGACAAT]
[+] EMBL CB618720 [TCTTTTTTTTAACGCTACACAAACAGAATGGTAAAACCATCACAATTCAAGATCACGAACACAATGATCAGATCAAAATTGCGATTTTCAAAACCAACTCCAGTGGAGTGAGTTTGCATGGACCATGGATTACTAGCCATCCACATTCCTCGTATTATTTTTGCACAACCAACTATGCAAAGAGGGATTTACTGTGAGGGAATGGAGCCAGTCCTGTAAGGAGATGGCCCATTCGACATTTACAGAGGAAGCGGCGAATGAAGATTGCAGTGATCACGGCCGATCACCAAAAGAGAACTTATACAATCTTTTCTTTCCTCTAGGATTGTATAGTTAGAGCTTGTTAGGATTTCTGAAGGGTCGAGAAGATACATCTTCATCTAGCTCTAATCGCTGTTGGTATTAGAGTCTTGACTGGCTTGGGGCTGCGCTGCAGGTAGGTAGGACCAGGCAATGGCTGCTGTGCCAAGGGTAACTGCAAGCCCAACCGAGACCCAGAACCACTTCTGTCTCTTCTTTCGGATATTTCGTTGTTGCCTCGACATCTCTGCAAGACATTAGGAAAGGAATTCACTCATCAATTACATGATTATTTGCAATATACTACCAACTAATGTTTCTGATACAAAGCAGTTAATGGCAAAAGATGTAAAAATATTATAACTATAACAATGCATTTCATATCAGTCTGAATTTAGACAAT]
consensusID : consensus_14103#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 378 fasta sequence
[GCCGTANAACTTCGCCAAAAAATTTTCGNTCTCTTAAAAGGAACCACCGAACAGGTATCGGCTTCTCGNCGGCCTTCTCCTGAGGAAGGGGAGGAGCTGNAGNCGGCTTGGAAGCAGCCTTCTGGGACTGTGTAGCTGACCCGGTCTCCAGTAACGGGTCACAGACGTAGTGCGTGATGGTCGGCATGGTGATGCGGCTGCCGGAATNAGAGGGAGATCACCGGAGATTTCGACTTCCTGGCATTAACGGCGGCGCCCAGCCACCTGCCCCCGGNCGGGGCGCGCGNGCGTGCGATGCGAGCGGCGCCTCCACCTNGCCGGGTCGCGTCGCTGCGAGGAAACCCTAGCCGCCGTGTCGCGCCCCCCGCCGCCGCCGCC]
[-] EMBL C28611 [GCCGTANAACTTCGCCAAAAAATTTTCGNTCTCTTAAAAGGAACCACCGAACAGGTATCGGCTTCTCGNCGGCCTTCTCCTGAGGAAGGGGAGGAGCTGNAGNCGGCTTGGAAGCAGCCTTCTGGGACTGTGTAGCTGACCCGGTCTCCAGTAACGGGTCACAGACGTAGTGCGTGATGGTCGGCATGGTGATGCGGCTGCCGGAATNAGAGGGAGATCACCGGAGATTTCGACTTCCTGGCATTAACGGCGGCGCCCAGCCACCTGCCCCCGGNCGGGGCGCGCGNGCGTGCGATGCGAGCGGCGCCTCCACCTNGCCGGGTCGCGTCGCTGCGAGGAAACCCTAGCCGCCGTGTCGCGCCCCCCGCCGCCGCCGCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14103#0 TTTTTGACGACGGTAGTTCATCCGTCCAATGCACAGCTGAGATGCAATTATACATTTACA 60
consensus_14103#2 ------------------------------------------------------------
consensus_14103#1 ------------------------------------------------------------
consensus_14103#0 TGTGCAAATGACCGACAAGATTAACGCTACACAAACAGAATGGTAAAACCATCACAATTC 120
consensus_14103#2 ------------------------------------------------------------
consensus_14103#1 ------------------------------------------------------------
consensus_14103#0 AAGATCACGAACACAATGATCAGATCAAATTGCGATTTTCAAAACCAACTCCAGTGGAGT 180
consensus_14103#2 ------------------------------------------------------------
consensus_14103#1 ------------------------------------------------------------
consensus_14103#0 GAGTTTGCATGGACCATGGATTACTAGCCATCCACATTCCTCGTATTATTTTTGCACAAC 240
consensus_14103#2 ------------------------------------------------------------
consensus_14103#1 ------------------------------------------------------------
consensus_14103#0 CAACTATGCAAAGAGGGATTTACTGTGAGGGAATGGAGCCAGTCCTGTAGGGAGATGGCC 300
consensus_14103#2 ------------------------------------------------------------
consensus_14103#1 ------------------------------------------------------------
consensus_14103#0 CATTCGACATTTACAGAGGAAGCGGCGAATGAAGATTGCAGTGATCACGGCCGATCACCA 360
consensus_14103#2 ------------------------------------------------------------
consensus_14103#1 ------------------------------------------------------------
consensus_14103#0 AAAGAACTTATACAATCTTTTCTTTCCCCTAGGATTGTATAGTTAGAGCTTGTTAGGATT 420
consensus_14103#2 ------------------------------------------------------------
consensus_14103#1 ------------------------------------------------------------
consensus_14103#0 TCTGAAGGGTCGAGAAGATACATCTTCATCTAGCTCTAATCGCTGTTGGTATTAGAGTCT 480
consensus_14103#2 ------------------------------------------------------------
consensus_14103#1 ------------------------------------------------------------
consensus_14103#0 TGACTGGCTTGGGGCTGCGCTGCAGGTAGGTAGGACCAGGCAATGGCTGCTGTGCCAAGG 540
consensus_14103#2 ------------------------------------------------------------
consensus_14103#1 ------------------------------------------------------------
consensus_14103#0 GTAACTGCAAGCCCAACCGAGCCCCAGAACCACTTCTGTCTCTTCTTTCGGATATTTCGT 600
consensus_14103#2 ------------------------------------------------------------
consensus_14103#1 ------------------------------------------------------------
consensus_14103#0 TGTTGCCTCGACATCTCGATAGCCTCTTGGTTTCTTTGAGACATCTCCCTGTTTGCAGCT 660
consensus_14103#2 ------------------------------------------------------------
consensus_14103#1 ------------------------------------------------------------
consensus_14103#0 TCATAGTACTGGACCCTATCGGATAGCCTTGCAATCTCGAAGTTCTTTGCTGCAATCTTA 720
consensus_14103#2 ------------------------------------------------------------
consensus_14103#1 ------------------------------------------------------------
consensus_14103#0 GTTTCCATATCTGTCTCAACTTCTGCACGAGCAAATCCCCGTGCAATAGCAGCAGCCACA 780
consensus_14103#2 ------------------------------------------------------------
consensus_14103#1 ------------------------------------------------------------
consensus_14103#0 AGTTGTGAAACAGTTATTTGTTGGCACAACTCAGCTCCAGGATCCATGCTTGAATCATCA 840
consensus_14103#2 ------------------------------------------------------------
consensus_14103#1 ------------------------------------------------------------
consensus_14103#0 GTGTCCTCAGCTAAACTTGGAGGTGGAAGTGTCAAGGCAATAAGTGATAGGTGATCACTC 900
consensus_14103#2 ------------------------------------------------------------
consensus_14103#1 ------------------------------------------------------------
consensus_14103#0 AGCTTCTTCCACTCCTTTTGCCAGTTCTCAAGTGCTTCCTCAGCTTGCTTCCTTCTCTCA 960
consensus_14103#2 ------------------------------------------------------------
consensus_14103#1 ------------------------------------------------------------
consensus_14103#0 ATTTCCATCAACAGACTCAACCTCATTTCACGAAGGTCATCATCCATGCATTGTGAAGAT 1020
consensus_14103#2 ------------------------------------------------------------
consensus_14103#1 ------------------------------------------------------------
consensus_14103#0 CGAGTTGCACCATCACTGGATATTTCTTCGAATGCATCATAAAATTCTGCACCAGGTGTG 1080
consensus_14103#2 ------------------------------------------------------------
consensus_14103#1 ------------------------------------------------------------
consensus_14103#0 CCAACAGATGTCCCAAGAGGGGAACTAGGCTTCCACCACCGCTCATGCCCACCAGCATCC 1140
consensus_14103#2 ------------------------------------------------------------
consensus_14103#1 ------------------------------------------------------------
consensus_14103#0 TCCGCCTCAGAGTTACTAGCCATGCTCAGTGAATCCTGAAGCTCAAAGAAGGCATCATTG 1200
consensus_14103#2 ------------------------------------------------------------
consensus_14103#1 ------------------------------------------------------------
consensus_14103#0 TTGATTTTCCTTGGTGTTCCACCATTGGCAGGCCTTCCAACATTGACAGGCCTCACTGTC 1260
consensus_14103#2 ------------------------------------------------------------
consensus_14103#1 ------------------------------------------------------------
consensus_14103#0 GCATCAGGATTTCCATGCTGAAACTCGAACTCAGCCTGATCATGCCCATATTCGCGTGAA 1320
consensus_14103#2 ------------------------------------------------------------
consensus_14103#1 ------------------------------------------------------------
consensus_14103#0 ACAGTGCCCTTGCCCTTCTGTAGCATTCCATTCTGCCAGTCGAGGGTCTCCACCACACCA 1380
consensus_14103#2 ------------------------------------------------------------
consensus_14103#1 ------------------------------------------------------------
consensus_14103#0 CTGTCACCTTCAAGTACACCATTGCTTGCTTGCTGAAACTCAAACTCAGGTTCCTGCGCT 1440
consensus_14103#2 ------------------------------------------------------------
consensus_14103#1 ------------------------------------------------------------
consensus_14103#0 TCAAAGGATTGACTTCTTTTCGGCAAAGGAGGCAGCGTCACAGAGAGCGTGGGCTGCTGG 1500
consensus_14103#2 ------------------------------------------------------------
consensus_14103#1 -----------------------------------TCTTTTTTTTAACGCTACACAAACA 25
consensus_14103#0 CTACCATCACTACCAACATCCCCCTGGGAAAGTGTCTTCACCAAGCAGGGTCCCCTCCTT 1560
consensus_14103#2 ------------------------------------------------------------
consensus_14103#1 GAATGGTAAAACCATCACAATTCAAGATCACGAACACAATGATCAGATCAAAATTGCGAT 85
consensus_14103#0 TTATGGTTGATGAGGTACGGTGACCAGGTTCCTGGGAACGACGAAGGCGAATCCGGCAGT 1620
consensus_14103#2 ------------------------------------------------------------
consensus_14103#1 TTTCAAAACCAACTCCAGTGGAGTGAGTTTGCATGGACCATGGATTACTAGCCATCCACA 145
consensus_14103#0 GATGTGCTCTCAGGCGTGG-CGTACAGCGTCGCCGACGCAGTCTGCGCTCTCCTGACAGG 1679
consensus_14103#2 -----------------GC-CGTANAACTTCGCCAAAA-AATTTTCGNTCTCTTAAAAGG 41
consensus_14103#1 TTCCTCGTATTATTTTTGCACAACCAACTATGCAAAGAGGGATTTACTGTGAGGGAATGG 205
* * * * ** * * * **
consensus_14103#0 AGCCACCGGCACAGGTATCGGCTTCTCGGCGGCCTTCTCCTGAGGAAGGGGAGGAGCTGG 1739
consensus_14103#2 AACCACCGA-ACAGGTATCGGCTTCTCGNCGGCCTTCTCCTGAGGAAGGGGAGGAGCTGN 100
consensus_14103#1 AGCCAGTCCTGTAAGGA--GATGGCCCATTCGACATTTACAGAGGAAGCGGCGAA--TGA 261
* *** * * * * * * * * * * * ******* ** * * **
consensus_14103#0 AGGCGGCT-TGGAAGCAGCCTTCTGGGACTGTGTAGCTGACCCGGTCTCCAGTAAC---- 1794
consensus_14103#2 AGNCGGCT-TGGAAGCAGCCTTCTGGGACTGTGTAGCTGACCCGGTCTCCAGTAAC---- 155
consensus_14103#1 AGATTGCAGTGATCACGGCCGATCACCAAAAGAGAACTTATACAATCTTTTCTTTCCTCT 321
** ** ** * *** * * ** * * *** * *
consensus_14103#0 -GGGTCCAGCACGTAGTGCGTGATGG----TCGGCATGGTGATGCGGCTGC--CGGAATC 1847
consensus_14103#2 -GGGTCACAGACGTAGTGCGTGATGG----TCGGCATGGTGATGCGGCTGC--CGGAATN 208
consensus_14103#1 AGGATTGTATAGTTAGAGCTTGTTAGGATTTCTGAAGGGTCGAGAAGATACATCTTCATC 381
** * * *** ** ** * * ** * * *** * * * * * **
consensus_14103#0 AGAGGGAGATCACCGGAGATTTCGACTTCCTGGC--ATCAACGGCGGCGCC-CAGCCACC 1904
consensus_14103#2 AGAGGGAGATCACCGGAGATTTCGACTTCCTGGC--ATTAACGGCGGCGCC-CAGCCACC 265
consensus_14103#1 TAGCTCTAATCGCTGTTGGTATTAGAGTCTTGACTGGCTTGGGGCTGCGCTGCAGGTAGG 441
*** * * * * * ** ** * *** **** *** *
consensus_14103#0 TGCCCCCGGCGGCGCGCGCGCGCGC---GTGCGA-TGCGAGCGGCGCCTCCACCTCGCGC 1960
consensus_14103#2 TGCCCCCGGNCG-GGGCGCGCGNGC---GTGCGA-TGCGAGCGGCGCCTCCACCTNGC-C 319
consensus_14103#1 TAGGACCAGGCAATGGCTGCTGTGCCAAGGGTAACTGCAAGCCCAACCGAGACCCAGAAC 501
* ** * ** * ** * * * *** *** ** *** * *
consensus_14103#0 GGGTCGCGTCGCTGCGAGGAAAC-CCTAGCCGCCGTGTCGCGCCCCCCGCC-GCCGCCGC 2018
consensus_14103#2 GGGTCGCGTCGCTGCGAGGAAAC-CCTAGCCGCCGTGTCGCGCCCCCCGCC-GCCGCCGC 377
consensus_14103#1 CACTTCTGTCTCTTCTTTCGGATATTTCGTTGTTGCCTCGACATCTCTGCAAGACATTAG 561
* *** ** * * * * * * *** * * ** * *
consensus_14103#0 CGTCTCTTCCTCCTATCGCGTTTCGAATTTTATGTGCGGGACACAACAAAAAAAAATAAA 2078
consensus_14103#2 C----------------------------------------------------------- 378
consensus_14103#1 GAAAGGAATTCACTCATCAATTACATGATTATTTGCAATATACTACCAACTAATGTTTCT 621
consensus_14103#0 TAAGCGGCGCGAGACG-------------------------------------------- 2094
consensus_14103#2 ------------------------------------------------------------
consensus_14103#1 GATACAAAGCAGTTAATGGCAAAAGATGTAAAAATATTATAACTATAACAATGCATTTCA 681
consensus_14103#0 ----------------------
consensus_14103#2 ----------------------
consensus_14103#1 TATCAGTCTGAATTTAGACAAT 703
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||