These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14103#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 2094 fasta sequence [TTTTTGACGACGGTAGTTCATCCGTCCAATGCACAGCTGAGATGCAATTATACATTTACATGTGCAAATGACCGACAAGATTAACGCTACACAAACAGAATGGTAAAACCATCACAATTCAAGATCACGAACACAATGATCAGATC-AAATTGCGATTTTCAAAACCAACTCCAGTGGAGTGAGTTTGCATGGACCATGGATTACTAG-CCATCCACATTCCTCGTATTATTTTTGCACAACCAACTATGCAAAGAGGGATTTACTGTGAGGGAATGGAGCCAGTCCTGTAGGGAGATGGCCCATTCGACATTTACAGAGGAAGCGGCGAATGAAGATTGCAGTGATCACGGCCGATCACCAAA--AGAACTTATACAATCTTTTCTTTCCCCTAGGATTGTATAGTTAGAGCTTGTTAGGATTTCTGAAGGGTCGAGAAGATACATCTTCATCTAGCTCTAATCGCTGTTGGTATTAGAGTCTTGACTGGCTTGGGGCTGCGCTGCAGGTAGGTAGGACCAGGCAATGGCTGCTGTGCCAAGGGTAACTGCAAGCCCAACCGAGCCCCAGAACCACTTCTGTCTCTTCTTTCGGATATTTCGTTGTTGCCTCGACATCTCGATAGCCTCTTGGTTTCTTTGAGACATCTCCCTGTTTGCAGCTTCATAGTACTGGACCCTATCGGATAGCCTTGCAATCTCGAAGTTCTTTGCTGCAATCTTAGTTTCCATATCTGTCTCAACTTCTGCACGAGCAAATCCCCGTGCAATAGCAGCAGCCACAAGTTGTGAAACAGTTATTTGTTGGCACAACTCAGCTCCAGGATCCATGCTTGAATCATCAGTGTCCTCAGCTAAACTTGGAGGTGGAAGTGTCAAGGCAATAAGTGATAGGTGATCACTCAGCTTCTTCCACTCCTTTTGCCAGTTCTCAAGTGCTTCCTCAGCTTGCTTCCTTCTCTCAATTTCCATCAACAGACTCAACCTCATTTCACGAAGGTCATCATCCATGCATTGTGAAGATCGAGTTGCACCATCACTGGATATTTCTTCGAATGCATCATAAAATTCTGCACCAGGTGTGCCAACAGATGTCCCAAGAGGGGAACTAGGCTTCCACCACCGCTCATGCCCACCAGCATCCTCCGCCTCAGAGTTACTAGCCATGCTCAGTGAATCCTGAAGCTCAAAGAAGGCATCATTGTTGATTTTCCTTGGTGTTCCACCATTGGCAGGCCTTCCAACATTGACAGGCCTCACTGTCGCATCAGGATTTCCATGCTGAAACTCGAACTCAGCCTGATCATGCCCATATTCGCGTGAAACAGTGCCCTTGCCCTTCTGTAGCATTCCATTCTGCCAGTCGAGGGTCTCCACCACACCACTGTCACCTTCAAGTACACCATTGCTTGCTTGCTGAAACTCAAACTCAGGTTCCTGCGCTTCAAAGGATTGACTTCTTTTCGGCAAAGGAGGCAGCGTCACAGAGAGCGTGGGCTGCTGGCTACCATCACTACCAACATCCCCCTGGGAAAGTGTCTTCACCAAGCAGGGTCCCCTCCTTTTATGGTTGATGAGGTACGGTGACCAGGTTCCTGGGAACGACGAAGGCGAATCCGGCAGTGATGTGCTCTCAGGCGTGGCGTACAGCGTCGCCGACGCAGTCTGCGCTCTCCTGACAGGAGCCACCGGCACAGGTATCGGCTTCTCGGCGGCCTTCTCCTGAGGAAGGGGAGGAGCTGGAGGCGGCTTGGAAGCAGCCTTCTGGGACTGTGTAGCTGACC-CGGTCTCC-AGTAACGGGTC-CAGCACGTAGTGCGTGATGGTCGGCATGGTGATGCGGCTGCCGGAATCAGAGGGAGATCACCGGAGATTTCGACTTCCTGGCATCAACGGCGGCGCCCAGCCACCTGCCCCCGGCGGCGCGCGCGCGCGCGTGCGATGCGAGCGGCGCCTCCACCTCGCGCGGGTCGCGTCGCTGCGAGGAAACCCTAGCCGCCGTGTCGCGCCCCCCGCCGCCGCCGCCGTCTCTTCCTCCTATCGCGTTTCGAATTTTATGTGCGGGACACAACAAAAAAAAATAAATAAGCGGCGCGAGACG] [-] EMBL BI797793 [TTTTTGACGACGGTAGTTCATCCGTCCAATGCACAGCTGAGATGCAATTATACATTTACATGTGCAAATGACCGACAAGATTAACGCTACACAAACAGAATGGTAAAACCATCACAATTCAAGATCACGAACACAATGATCAGATC AAAATGCGATTTTCAAAACCAACTCCAGTGGAGTGAGTTTGCATGGACCATGGATTACTAG CCATCCACATTCCTCGTATTATTTTTGCACAACCAACTATGCAAAGAGGGATTTACTGTGAGGGAATGGAGCCAGTCCTGTAAGGAGATGGCCCATTCGACATTTACAGAGGAAGCGGCGAATGAAGATTGCAGTGATCACGG CGATCACCAAAAGAGAACTTATACAATCTTTTCTTTCCTCTAGGATTGTATAGTTAGAGCTTGTTAGGATTTCTGAAGGGTCGAGAAGATACATCTTCATCTAGCTCTAATCGCTG TGGTATTAGAGTCTTGACTGGCTTGGGGCTGCGCTGCAGGTAGGTAGGACCAGGCAATGGCTGCTGTGCCAAGGGTAACTGCAAGCCCAA CGAGCCCCAGAA CA TTCTGTCTCTTCTTTCGG ] [-] EMBL AU100972 [ tTTCAAGATCACGAACACAATGATCAGATCAAAATTGCGATTTTCAAAACCAACTCCAGTGGAGTGAGTNTGCATGGACCATGGATTACTAG CCATCCACATTCCTCGTATTATTTTTGCACAACCAACTATGCAAAGAGGGATTTACTGTGAGGGAATGGAGCCAGTCCTGTAGGGAGATGGCCCATTCGACATNTACAGAGGAAGCGGCGAATGAAGATTGCAGTGATCACGGCCGATCACCAAA AGAACTTATACAATCTTTTCTTTCCCCTAGGATTGTATAGTTAGAGCTTGTTAGGATTTCTGAAGGGTCGAGAAGATACATCTTC ] [+] EMBL CB679307 [ ATC AAATTGCGATTTTCAAAACCAACTCCAGCGTAGTGAGTTTGCATGGACCATGGATTACTAG CCATCCACATTCCTCGTATTATTTTTGCACAACCAACTATGCAAAGAGGGATTTACTGTGAGGGAATGGAGCCAGTCCTGTAGGGAGATGGCCCATTCGACATTTACAGAGGAAGCGGCGAATGAAGATTGCAGTGATCACGGCCGATCACCAAA AGAACTTATACAATCTTTTCTTTCCCCTAGGATTGTATAGTTAGAGCTTGTTAGGATTTCTGAAGGGTCGAGAAGATACATCTTCATCTAGCTCTAATCGCTGTTGGTATTAGAGTCTTGACTGGCTTGGGGCTGCGCTGCAGGTAGGTAGGACCAGGCAATGGCTGCTGTGCCAAGGGTAACTGCAAGCCCAACCGAGCCCCAGAACCACTTCTGTCTCTTCTTTCGGATATTTCGTTGTTGCCTCGACATCTCGATAGCCTCTTGGTTTCTTTGAGACATCTCCCTGTTTGCAGCTTCATAGTACTGGACCCTATCGGATAGCCTTGCAATCTCGAAGTTCTTTGCTGCAATCTTAGTTTCCATATCTGTCTCAACTTCTGCACGAGCAAATCCCCGTGCAATAGCAGCAGCCACAAGTTGTGAAACAGTTATTTGTTGGCACAACTCAGCTCCAGGATCCATGCTTGAATCATCAGTGTCCTCAGCTAAACTTGGAGGTGGAAGTGTCAAGGCAATAAGTGATAGGTGATCACTCAGCTTCTTCCACTCCTTTTGCCAGTTCTCAAGTGCTTCCTCAGCTTGCTTCCTTC ] [+] EMBL CB661238 [ TTGCGATTTTCAAAACCAACTCCCTTGGAGTGAGTTTGCATGGACCATGGATTACTAA CCATCCACATTCCTCGTATTATTTTTGCACAACCAACTATGCAAAGAGGGATTTACTGTGAGGGAATGGAGCCAGTCCTGTAAGGAGATGGCCCATTCGACATTTACAGAGGAAGCGGCGAATGAAGATTGCAGTGATCACGGCCGATCACCAAA AGAACTTATACAATCTTTTCTTTCCCCTAGGATTGTATAGTTAGAGCTTGTTAGGATTTCTGAAGGGTCAAGAAGATACATCTTCATCTAGCTCTAATCGCTGTTGGTATTAGAGTCTTGACTGGCTTGGGGCTGCGCTGCAGGTAGGTAGGACCAGGCAATGGCTGCTGTGCCAAGGGTAACTGCAAGCCCAACCGAGCCCCAGAACCACTTCTGTCTCTTCTTTCGGATATTTCGTTGTTGCCTCGACATCTCGATAGCCTCTTGGTTTCTTTGAGACATCTCCCTGTTTGCAGCTTCATAGTACTGGACCCTATCGGATAGCCTTGCAATCTCGAAGTTCTTTGCTGCAATCTTAGTTTCCATATCTGTCTCAACTTCTGCACGAGCAAATCCCCGTGCAATAGCAGCAGCCACAAGTTGTGAAACAGTTATTTGTTGGCACAACTCAGCTCCAGGATCCATGCTTGAATCATCAGTGTCCTCAGCTAAACTTGGAGGTGGAAGTGTCAAGGCAATAAGTGATAGGTGATCACTCAGCTTCTTCCACTC ] [-] EMBL CF304435 [ AGTTTGCATGGACCATGGA TACTAGCCCATCCACATTCCTCGTATTATTTTTGCACAACCAACTATGCAAAGAGGGATTTACTGTGAGGGAATGGAGCCAGTCCTGTAGGGAGATGGCCCATTCGACATTTACAGAGGAAGCGGCGAATGAAGATTGCAGTGATCACGGCCGATCACCAAA AGAACTTATACAATCTTTTCTTTCCCCTAGGATTGTATAGTTAGAGCTTGTTAGGATTTCTGAAGGGTCGAGAAGATACATCTTCATCTAGCTCTAATCGCTGTTGGTATTAGAGTCTTGACTGGCTTGGGGCTGCGCTGCAGGTAGGTAGGACCAGGCAATGGCTGCTGTGCCAAGGGTAACTGCAAGCCCAACCGAGCCCCAGAACCACTTCTGTCTCTTCTTTCGGATATTTCGTTGTTGCCTCGACATCTCGATAGCCTCTTGGTTTCTTTGAGACATCTCCCTGTTTGCAGCTTCATAGTACTGGACCCTATCGGATAGCCTTGCAATCTCGAAGTTCTTTGCTGCAATCTTAGTTTCCATATCTGTCTCAACTTCTGCACGAGCAAATCCCCGTGCAATAGCAGCAGCCACAAGTTGT AAACA ] [-] EMBL CB661237 [ TAGCCTCTTGGTTTCTTTGAGACATCTCCCTGTTTGCAGCTTCATAGTACTGGACCCTATCGGATAGCCTTGCAATCTCGAAGTTCTTTGCTGCAATCTTAGTTTCCATATCTGTCTCAACTTCTGCACGAGCAAATCCCCGTGCAATAGCAGCAGCCACAAGTTGTGAAACAGTTATTTGTTGGCACAACTCAGCTCCAGGATCCATGCTTGAATCATCAGTGTCCTCAGCTAAACTTGGAGGTGGAAGTGTCAAGGCAATAAGTGATAGGTGATCACTCAGCTTCTTCCACTCCTTTTGCCAGTTCTCAAGTGCTTCCTCAGCTTGCTTCCTTCTCTCAATTTCCATCAACAGACTCAACCTCATTTCACGAAGGTCATCATCCATGCATTGTGAAGATCGAGTTGCACCATCACTGGATATTTCTTCGAATGCATCATAAAATTCTGCACCAGGTGTGCCAACAGATGTCCCAAGAGGGGAACTAGGCTTCCACCACCGCTCATGCCCACCAGCATCCTCCGCCTCAGAGTTACTAGCCATGCTCAGTGAATCCTGAAGCTCAAAGAAGGCATCATTGTTGATTTTCCTTGGTGTTCCACCATTGGCAGGCCTTCCAACATTGACAGGCCTCACTGTCGCATCAGGATTTCCATGCTGAAACTCGAACTCAGCCTGATCATGCCCATATTCGCCTGAAACAGTGCCCTTGCCCTTCTGTAGCATTCCATTCTGCCAGTCGAGGGTCTCCACCACACCACTGTC ] [-] EMBL D43580 [ TCCAGGATCCATGCTTGAATCATCAGTGTCCTCAGCTAAACTTGGAGGTGGAAGTGTCAAGGCAATAAGTGATAGGTGATCACTCAGCTTCTTCCACTCCTTTTGCCAGTTCTCAAGTGCTTCCTCAGCTTGCTTCCTTCTCTCAATTTCCATCAACAGACTCAACCTCATTTCACGAAGGTCATCATCCATGCATTGTGAAGATCGAGTTGCACCATCACTGGATATTTCTTCGAATGCATCATAAAATTCTGCACCAGGTGTGCCAACAG ] [-] EMBL CB679306 [ ATTCGCGTGAAACAGTGCCCTTGCCCTTCTGTAGCATTCCATTCTGCCAGTCGAGGGTCTCCACCACACCACTGTCACCTTCAAGTACACCATTGCTTGCTTGCTGAAACTCAAACTCAGGTTCCTGCGCTTCAAAGGATTGACTTCTTTTCGGCAAAGGAGGCAGCGTCACAGAGAGCGTGGGCTGCTGGCTACCATCACTACCAACATCCCCCTGGGAAAGTGTCTTCACCAAGCAGGGTCCCCTCCTTTTATGGTTGATGAGGTACGGTGACCAGGTTCCTGGGAACGACGAAGGCGAATCCGGCAGTGATGTGCTCTCAGGCGTGGCGTACAGCGTCGCCGACGCAGTCTGCGCTCTCCTGACAGGAGCCACCGGCACAGGTATCGGCTTCTCGGCGGCCTTCTCCTGAGGAAGGGGAGGAGCTGGAGGCGGCTTGGAAGCAGCCTTCTGGGACTGTGTAGCTGACC CGGTCTCC AGTAACGGGTC CAGCACGTAGTGCGTGATGGTCGGCATGGTGATGCGGCTGCCGGAATCAGAGGGAGATCACCGGAGATTTCGACTTCCTGGCATCAACGGCGGCGCCCAGCCACCTGCCCCCGGCGGCGCGCGCGCGCGCGTGCGATGCGAGCGGCGCCTCCACCTCGCGCGGGTCGCGTCGCTGCGAGGAAACCCTAGCCGCCGTGTCGCGCCCCCCGCCGCCGCCGCCGTCTCTTCCTCCTATCGCGTTTGGAATTTTATGTGCGGGACACAACAAAAAAAAATAAATAAGCGGCGC ] [-] EMBL CB680637 [ TCGCGTGAAACAGTGCCCTTGCCCTTCTGTAGCATTCCATTCTGCCAGTCGAGGGTCTCCACCACACCACTGTCACCTTCAAGTACACCATTGCTTGCTTGCTGAAACTCAAACTCAGGTTCCTGCGCTTCAAAGGATTGACTTCTTTTCGGCAAAGGAGGCAGCGTCACAGAGAGCGTGGGCTGCTGGCTACCATCACTACCAACATCCCCCTGGGAAAGTGTCTTCACCAAGCAGGGTCCCCTCCTTTTATGGTTGATGAGGTACGGTGACCAGGTTCCTGGGAACGACGAAGGCGAATCCGGCAGTGATGTGCTCTCAGGCGTGGCGTACAGCGTCGCCGACGCAGTCTGCGCTCTCCTGACAGGAGCCACCGGCACAGGTATCGGCTTCTCGGCGGCCTTCTCCTGAGGAAGGGGAGGAGCTGGAGGCGGCTTGGAAGCAGCCTTCTGGGACTGTGTAGCTGACC CGGTCTCC AGTAACGGGTC CAGCACGTAGTGCGTGATGGTCGGCATGGTGATGCGGCTGCCGGAATCAGAGGGAGATCACCGGAGATTTCGACTTCCTGGCATCAACGGCGGCGCCCAGCCACCTGCCCCCGGCGGCGCGCGCGCGCGCGTGCGATGCGAGCGGCGCCTCCACCTCGCGCGGGTCGCGTCGCTGCGAGGAAACCCTAGCCGCCGTGTCGCGCCCCCCGCCGCCGCCGCCGTCTCTTCCTCCTATCGCGTTTCGAATTTTATGTGCGGGACACAACAAAAAAAAATAAATAAGCGGCGC ] [-] EMBL CF306814 [ CATTCTGCCAGTCGAGGGTCTCCACCACACCACTGTCACCTTCAAGTACACCATTGCTTGCTTGCTGAAACTCAAACTCAGGTTCCTGCGCTTCAAAGGATTGACTTCTTTTCGGCAAAGGAGGCAGCGTCACAGAGAGCGTGGGCTGCTGGCTACCATCACTACCAACATCCCCCTGGGAAAGTGTCTTCACCAAGCAGGGTCCCCTCCTTTTATGGTTGATGAGGTACGGTGACCAGGTTCCTGGGAACGACGAAGGCGAATCCGGCAGTGATGTGCTCTCAGGCGTGGCGTACAGCGTCGCCGACGCAGTCTGCGCTCTCCTGACAGGAGCCACCGGCACAGGTATCGGCTTCTCGGCGGCCTTCTCCTGAGGAAGGGGAGGAGCTGGAGGCGGCTTGGAAGCAGCCTTCTGGGACTGTGTAGCTGACC CGGTCTCC AGTAACGGGTC CAGCACGTAGTGCGTGATGGTCGGCATGGTGATGCGGCTGCCGGAATCAGAGGGAGATCACCGGAGATTTCGA ] [-] EMBL CB618719 [ ATTCTGCCAGTCGAGGGTCTCCACCACACCACTGTCACCTTCAAGTACACCATTGCTTGCTTGCTGAAACTCAAACTCAGGTTCTTGCGCTTCAAAGGATTGACTTCTTTTCGGCAAAGGAGGCAGCGTCACAGAGAGCGTGGGCTGCTGGCTACCATCACTACCAACATCCCCCTGGGAAAGTGTCTTCACCAAGCAGGGTCCCCTCCTTTTATGGTTGATGAGGTACGGTGACCAGGTTCCTGGGAACGACGAAGGCGAATCCGGCAGTGATGTGCTCTCAGGCGTGGCGTACAGCGTCGCCGACGCAGTCTGCGCTCTCCTGACAGGAGCCACCGGCACAGGTATCGGCTTCTCGGCGGCCTTCTCCTGAGGAAGGGGAGGAGCTGGAGGCGGCTTGGAAGCAGCCTTCTGGGACTGTGTAGCTGACC CGGTCTCC AGTAACGGGTC CAGCACGTAGTGCGTGATGGTCGGCATGGTGATGCGGCTGCCGGAATCAGAGGGAGATCACCGGAGATTTCGACTTCCTGGCATCAACGGCGGCGCCCAGCCACCTG CCCCGGCGGCGCGCGCGCGCGCGTGCGATGCGAGCGGCGCCTCCACCTCGCGCGGGTCGCGTCGCTGCGAGGAAACCCTAGCCGCCGTGTCGCGCCCCGCGCCGCCGCCGCCGTCTCTTCCTCCTATCGCGTTTCGAAT ] [-] EMBL C28854 [ GCCTTCTGGGACTGTGTAGCTGACCNCGGTCTCCAAGTAACGGGTCNCAANACGTAGTGCGTGATGGTCGGCATGGTGATGCGNCTGCCGGAATCAGAGGGAGATCACCGGAGATTTCGACTTCCTGGCATCAACGGCGGCGCCCAGCCACCTGCCCCCGGNAG NCCCGCGCGCGCGTGCGATGCGAGCGGCGCCTCCACCTCGCGCGGGTCGCGTCGCTGCGAGGAAACCCTAGCCGCCGTGTCGCGCCCCCCGCCGCCGCCGC ] [-] EMBL OSC109271 [ TGACC CGGTCTCC AGTAACGGGTC CAAGACGTAGTGCGTGATGGTCGGCATGGTGATGCGGCTGCCGGAATCAGAGGGAGATCACCGGAGATTTCGACTTCCTGGCATCAACGGCGGCGCCCAGCCACCTGCCCCCGGCNG GGGCGCGCGCGCGTGCGATGCGAGCGGCGCCTCCACCTCGCGCGGGTCGCGTCGCTGCGAGGAAACCCTAGCCGCCGTGTCGCGCCCCCCGCCGCCGCCGCCGTCTCTTCCTCCTATCGCGTTTCGAATTTTATGTGCGGGACACAACAAAAAAAAATAAATAAGCGGCGCGAGACG] consensusID : consensus_14103#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 703 fasta sequence [TCTTTTTTTTAACGCTACACAAACAGAATGGTAAAACCATCACAATTCAAGATCACGAACACAATGATCAGATCAAAATTGCGATTTTCAAAACCAACTCCAGTGGAGTGAGTTTGCATGGACCATGGATTACTAGCCATCCACATTCCTCGTATTATTTTTGCACAACCAACTATGCAAAGAGGGATTTACTGTGAGGGAATGGAGCCAGTCCTGTAAGGAGATGGCCCATTCGACATTTACAGAGGAAGCGGCGAATGAAGATTGCAGTGATCACGGCCGATCACCAAAAGAGAACTTATACAATCTTTTCTTTCCTCTAGGATTGTATAGTTAGAGCTTGTTAGGATTTCTGAAGGGTCGAGAAGATACATCTTCATCTAGCTCTAATCGCTGTTGGTATTAGAGTCTTGACTGGCTTGGGGCTGCGCTGCAGGTAGGTAGGACCAGGCAATGGCTGCTGTGCCAAGGGTAACTGCAAGCCCAACCGAGACCCAGAACCACTTCTGTCTCTTCTTTCGGATATTTCGTTGTTGCCTCGACATCTCTGCAAGACATTAGGAAAGGAATTCACTCATCAATTACATGATTATTTGCAATATACTACCAACTAATGTTTCTGATACAAAGCAGTTAATGGCAAAAGATGTAAAAATATTATAACTATAACAATGCATTTCATATCAGTCTGAATTTAGACAAT] [+] EMBL CB618720 [TCTTTTTTTTAACGCTACACAAACAGAATGGTAAAACCATCACAATTCAAGATCACGAACACAATGATCAGATCAAAATTGCGATTTTCAAAACCAACTCCAGTGGAGTGAGTTTGCATGGACCATGGATTACTAGCCATCCACATTCCTCGTATTATTTTTGCACAACCAACTATGCAAAGAGGGATTTACTGTGAGGGAATGGAGCCAGTCCTGTAAGGAGATGGCCCATTCGACATTTACAGAGGAAGCGGCGAATGAAGATTGCAGTGATCACGGCCGATCACCAAAAGAGAACTTATACAATCTTTTCTTTCCTCTAGGATTGTATAGTTAGAGCTTGTTAGGATTTCTGAAGGGTCGAGAAGATACATCTTCATCTAGCTCTAATCGCTGTTGGTATTAGAGTCTTGACTGGCTTGGGGCTGCGCTGCAGGTAGGTAGGACCAGGCAATGGCTGCTGTGCCAAGGGTAACTGCAAGCCCAACCGAGACCCAGAACCACTTCTGTCTCTTCTTTCGGATATTTCGTTGTTGCCTCGACATCTCTGCAAGACATTAGGAAAGGAATTCACTCATCAATTACATGATTATTTGCAATATACTACCAACTAATGTTTCTGATACAAAGCAGTTAATGGCAAAAGATGTAAAAATATTATAACTATAACAATGCATTTCATATCAGTCTGAATTTAGACAAT] consensusID : consensus_14103#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 378 fasta sequence [GCCGTANAACTTCGCCAAAAAATTTTCGNTCTCTTAAAAGGAACCACCGAACAGGTATCGGCTTCTCGNCGGCCTTCTCCTGAGGAAGGGGAGGAGCTGNAGNCGGCTTGGAAGCAGCCTTCTGGGACTGTGTAGCTGACCCGGTCTCCAGTAACGGGTCACAGACGTAGTGCGTGATGGTCGGCATGGTGATGCGGCTGCCGGAATNAGAGGGAGATCACCGGAGATTTCGACTTCCTGGCATTAACGGCGGCGCCCAGCCACCTGCCCCCGGNCGGGGCGCGCGNGCGTGCGATGCGAGCGGCGCCTCCACCTNGCCGGGTCGCGTCGCTGCGAGGAAACCCTAGCCGCCGTGTCGCGCCCCCCGCCGCCGCCGCC] [-] EMBL C28611 [GCCGTANAACTTCGCCAAAAAATTTTCGNTCTCTTAAAAGGAACCACCGAACAGGTATCGGCTTCTCGNCGGCCTTCTCCTGAGGAAGGGGAGGAGCTGNAGNCGGCTTGGAAGCAGCCTTCTGGGACTGTGTAGCTGACCCGGTCTCCAGTAACGGGTCACAGACGTAGTGCGTGATGGTCGGCATGGTGATGCGGCTGCCGGAATNAGAGGGAGATCACCGGAGATTTCGACTTCCTGGCATTAACGGCGGCGCCCAGCCACCTGCCCCCGGNCGGGGCGCGCGNGCGTGCGATGCGAGCGGCGCCTCCACCTNGCCGGGTCGCGTCGCTGCGAGGAAACCCTAGCCGCCGTGTCGCGCCCCCCGCCGCCGCCGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14103#0 TTTTTGACGACGGTAGTTCATCCGTCCAATGCACAGCTGAGATGCAATTATACATTTACA 60 consensus_14103#2 ------------------------------------------------------------ consensus_14103#1 ------------------------------------------------------------ consensus_14103#0 TGTGCAAATGACCGACAAGATTAACGCTACACAAACAGAATGGTAAAACCATCACAATTC 120 consensus_14103#2 ------------------------------------------------------------ consensus_14103#1 ------------------------------------------------------------ consensus_14103#0 AAGATCACGAACACAATGATCAGATCAAATTGCGATTTTCAAAACCAACTCCAGTGGAGT 180 consensus_14103#2 ------------------------------------------------------------ consensus_14103#1 ------------------------------------------------------------ consensus_14103#0 GAGTTTGCATGGACCATGGATTACTAGCCATCCACATTCCTCGTATTATTTTTGCACAAC 240 consensus_14103#2 ------------------------------------------------------------ consensus_14103#1 ------------------------------------------------------------ consensus_14103#0 CAACTATGCAAAGAGGGATTTACTGTGAGGGAATGGAGCCAGTCCTGTAGGGAGATGGCC 300 consensus_14103#2 ------------------------------------------------------------ consensus_14103#1 ------------------------------------------------------------ consensus_14103#0 CATTCGACATTTACAGAGGAAGCGGCGAATGAAGATTGCAGTGATCACGGCCGATCACCA 360 consensus_14103#2 ------------------------------------------------------------ consensus_14103#1 ------------------------------------------------------------ consensus_14103#0 AAAGAACTTATACAATCTTTTCTTTCCCCTAGGATTGTATAGTTAGAGCTTGTTAGGATT 420 consensus_14103#2 ------------------------------------------------------------ consensus_14103#1 ------------------------------------------------------------ consensus_14103#0 TCTGAAGGGTCGAGAAGATACATCTTCATCTAGCTCTAATCGCTGTTGGTATTAGAGTCT 480 consensus_14103#2 ------------------------------------------------------------ consensus_14103#1 ------------------------------------------------------------ consensus_14103#0 TGACTGGCTTGGGGCTGCGCTGCAGGTAGGTAGGACCAGGCAATGGCTGCTGTGCCAAGG 540 consensus_14103#2 ------------------------------------------------------------ consensus_14103#1 ------------------------------------------------------------ consensus_14103#0 GTAACTGCAAGCCCAACCGAGCCCCAGAACCACTTCTGTCTCTTCTTTCGGATATTTCGT 600 consensus_14103#2 ------------------------------------------------------------ consensus_14103#1 ------------------------------------------------------------ consensus_14103#0 TGTTGCCTCGACATCTCGATAGCCTCTTGGTTTCTTTGAGACATCTCCCTGTTTGCAGCT 660 consensus_14103#2 ------------------------------------------------------------ consensus_14103#1 ------------------------------------------------------------ consensus_14103#0 TCATAGTACTGGACCCTATCGGATAGCCTTGCAATCTCGAAGTTCTTTGCTGCAATCTTA 720 consensus_14103#2 ------------------------------------------------------------ consensus_14103#1 ------------------------------------------------------------ consensus_14103#0 GTTTCCATATCTGTCTCAACTTCTGCACGAGCAAATCCCCGTGCAATAGCAGCAGCCACA 780 consensus_14103#2 ------------------------------------------------------------ consensus_14103#1 ------------------------------------------------------------ consensus_14103#0 AGTTGTGAAACAGTTATTTGTTGGCACAACTCAGCTCCAGGATCCATGCTTGAATCATCA 840 consensus_14103#2 ------------------------------------------------------------ consensus_14103#1 ------------------------------------------------------------ consensus_14103#0 GTGTCCTCAGCTAAACTTGGAGGTGGAAGTGTCAAGGCAATAAGTGATAGGTGATCACTC 900 consensus_14103#2 ------------------------------------------------------------ consensus_14103#1 ------------------------------------------------------------ consensus_14103#0 AGCTTCTTCCACTCCTTTTGCCAGTTCTCAAGTGCTTCCTCAGCTTGCTTCCTTCTCTCA 960 consensus_14103#2 ------------------------------------------------------------ consensus_14103#1 ------------------------------------------------------------ consensus_14103#0 ATTTCCATCAACAGACTCAACCTCATTTCACGAAGGTCATCATCCATGCATTGTGAAGAT 1020 consensus_14103#2 ------------------------------------------------------------ consensus_14103#1 ------------------------------------------------------------ consensus_14103#0 CGAGTTGCACCATCACTGGATATTTCTTCGAATGCATCATAAAATTCTGCACCAGGTGTG 1080 consensus_14103#2 ------------------------------------------------------------ consensus_14103#1 ------------------------------------------------------------ consensus_14103#0 CCAACAGATGTCCCAAGAGGGGAACTAGGCTTCCACCACCGCTCATGCCCACCAGCATCC 1140 consensus_14103#2 ------------------------------------------------------------ consensus_14103#1 ------------------------------------------------------------ consensus_14103#0 TCCGCCTCAGAGTTACTAGCCATGCTCAGTGAATCCTGAAGCTCAAAGAAGGCATCATTG 1200 consensus_14103#2 ------------------------------------------------------------ consensus_14103#1 ------------------------------------------------------------ consensus_14103#0 TTGATTTTCCTTGGTGTTCCACCATTGGCAGGCCTTCCAACATTGACAGGCCTCACTGTC 1260 consensus_14103#2 ------------------------------------------------------------ consensus_14103#1 ------------------------------------------------------------ consensus_14103#0 GCATCAGGATTTCCATGCTGAAACTCGAACTCAGCCTGATCATGCCCATATTCGCGTGAA 1320 consensus_14103#2 ------------------------------------------------------------ consensus_14103#1 ------------------------------------------------------------ consensus_14103#0 ACAGTGCCCTTGCCCTTCTGTAGCATTCCATTCTGCCAGTCGAGGGTCTCCACCACACCA 1380 consensus_14103#2 ------------------------------------------------------------ consensus_14103#1 ------------------------------------------------------------ consensus_14103#0 CTGTCACCTTCAAGTACACCATTGCTTGCTTGCTGAAACTCAAACTCAGGTTCCTGCGCT 1440 consensus_14103#2 ------------------------------------------------------------ consensus_14103#1 ------------------------------------------------------------ consensus_14103#0 TCAAAGGATTGACTTCTTTTCGGCAAAGGAGGCAGCGTCACAGAGAGCGTGGGCTGCTGG 1500 consensus_14103#2 ------------------------------------------------------------ consensus_14103#1 -----------------------------------TCTTTTTTTTAACGCTACACAAACA 25 consensus_14103#0 CTACCATCACTACCAACATCCCCCTGGGAAAGTGTCTTCACCAAGCAGGGTCCCCTCCTT 1560 consensus_14103#2 ------------------------------------------------------------ consensus_14103#1 GAATGGTAAAACCATCACAATTCAAGATCACGAACACAATGATCAGATCAAAATTGCGAT 85 consensus_14103#0 TTATGGTTGATGAGGTACGGTGACCAGGTTCCTGGGAACGACGAAGGCGAATCCGGCAGT 1620 consensus_14103#2 ------------------------------------------------------------ consensus_14103#1 TTTCAAAACCAACTCCAGTGGAGTGAGTTTGCATGGACCATGGATTACTAGCCATCCACA 145 consensus_14103#0 GATGTGCTCTCAGGCGTGG-CGTACAGCGTCGCCGACGCAGTCTGCGCTCTCCTGACAGG 1679 consensus_14103#2 -----------------GC-CGTANAACTTCGCCAAAA-AATTTTCGNTCTCTTAAAAGG 41 consensus_14103#1 TTCCTCGTATTATTTTTGCACAACCAACTATGCAAAGAGGGATTTACTGTGAGGGAATGG 205 * * * * ** * * * ** consensus_14103#0 AGCCACCGGCACAGGTATCGGCTTCTCGGCGGCCTTCTCCTGAGGAAGGGGAGGAGCTGG 1739 consensus_14103#2 AACCACCGA-ACAGGTATCGGCTTCTCGNCGGCCTTCTCCTGAGGAAGGGGAGGAGCTGN 100 consensus_14103#1 AGCCAGTCCTGTAAGGA--GATGGCCCATTCGACATTTACAGAGGAAGCGGCGAA--TGA 261 * *** * * * * * * * * * * * ******* ** * * ** consensus_14103#0 AGGCGGCT-TGGAAGCAGCCTTCTGGGACTGTGTAGCTGACCCGGTCTCCAGTAAC---- 1794 consensus_14103#2 AGNCGGCT-TGGAAGCAGCCTTCTGGGACTGTGTAGCTGACCCGGTCTCCAGTAAC---- 155 consensus_14103#1 AGATTGCAGTGATCACGGCCGATCACCAAAAGAGAACTTATACAATCTTTTCTTTCCTCT 321 ** ** ** * *** * * ** * * *** * * consensus_14103#0 -GGGTCCAGCACGTAGTGCGTGATGG----TCGGCATGGTGATGCGGCTGC--CGGAATC 1847 consensus_14103#2 -GGGTCACAGACGTAGTGCGTGATGG----TCGGCATGGTGATGCGGCTGC--CGGAATN 208 consensus_14103#1 AGGATTGTATAGTTAGAGCTTGTTAGGATTTCTGAAGGGTCGAGAAGATACATCTTCATC 381 ** * * *** ** ** * * ** * * *** * * * * * ** consensus_14103#0 AGAGGGAGATCACCGGAGATTTCGACTTCCTGGC--ATCAACGGCGGCGCC-CAGCCACC 1904 consensus_14103#2 AGAGGGAGATCACCGGAGATTTCGACTTCCTGGC--ATTAACGGCGGCGCC-CAGCCACC 265 consensus_14103#1 TAGCTCTAATCGCTGTTGGTATTAGAGTCTTGACTGGCTTGGGGCTGCGCTGCAGGTAGG 441 *** * * * * * ** ** * *** **** *** * consensus_14103#0 TGCCCCCGGCGGCGCGCGCGCGCGC---GTGCGA-TGCGAGCGGCGCCTCCACCTCGCGC 1960 consensus_14103#2 TGCCCCCGGNCG-GGGCGCGCGNGC---GTGCGA-TGCGAGCGGCGCCTCCACCTNGC-C 319 consensus_14103#1 TAGGACCAGGCAATGGCTGCTGTGCCAAGGGTAACTGCAAGCCCAACCGAGACCCAGAAC 501 * ** * ** * ** * * * *** *** ** *** * * consensus_14103#0 GGGTCGCGTCGCTGCGAGGAAAC-CCTAGCCGCCGTGTCGCGCCCCCCGCC-GCCGCCGC 2018 consensus_14103#2 GGGTCGCGTCGCTGCGAGGAAAC-CCTAGCCGCCGTGTCGCGCCCCCCGCC-GCCGCCGC 377 consensus_14103#1 CACTTCTGTCTCTTCTTTCGGATATTTCGTTGTTGCCTCGACATCTCTGCAAGACATTAG 561 * *** ** * * * * * * *** * * ** * * consensus_14103#0 CGTCTCTTCCTCCTATCGCGTTTCGAATTTTATGTGCGGGACACAACAAAAAAAAATAAA 2078 consensus_14103#2 C----------------------------------------------------------- 378 consensus_14103#1 GAAAGGAATTCACTCATCAATTACATGATTATTTGCAATATACTACCAACTAATGTTTCT 621 consensus_14103#0 TAAGCGGCGCGAGACG-------------------------------------------- 2094 consensus_14103#2 ------------------------------------------------------------ consensus_14103#1 GATACAAAGCAGTTAATGGCAAAAGATGTAAAAATATTATAACTATAACAATGCATTTCA 681 consensus_14103#0 ---------------------- consensus_14103#2 ---------------------- consensus_14103#1 TATCAGTCTGAATTTAGACAAT 703 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||