These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14111#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 810 fasta sequence [AAAACATTCTTCAGTTGATCTTGAGATTAAGTCACTCCTCCATCCCATCTCAAGAACTGATCAA-GGAAAGGAAAAAAAATGGCA-CTGAGGAGAATAATCAAGGAGCTCAAGGACCTTCAGAGGGATCCGCCGACTTCCTGCAGCGCCGGGC-CTGTGTCTGATGACATGTTCCACTGGCAAGCAACAATCATGGGGCCCAATGACAGCCCCTACTCTGGAGGAGTGTTCCTGGTGACCATCCACTT-CCCTCCTGACTACCCTTTCAAGCCTCCAAAGGTGGCATTCAAGACCAAGGTGTTCCATCCAAACATAAACAGCAATGGCAACATCTGCCTTGACATCCTCAAGGACCAGTGGAGCCCAGCTCTCACCATCTCCAA-GGTTCTTCTGTCGATC-TGCTCGCTGCTGACGGACCCGAACCCGGACGATCCGCTGGTGCCGGAGATCGCTCATATGTGCAAGACTGATCGCCTCAGATACGAATCCACCGCAAGAGGCTGGACGCAGAAGTACGCCATGGGCTAAGCTTAGCTGCAAGCTAGCTAATTGCAGCTGAAATGGCAATTGGATTTGGATTTGGATGCAGGGGACAATCAGTCAATCACCAGCATGTCGATTAGAATTCAGAAATATAGATCGTGCCATAAAAAAAGATAGTAATAATTCTTGCTTGCAATTATTAGGATTGTTGTTGCAAATCTGAATCATCGTTATCATCTAACCTATAATCAAAAACCATCGTCTTCTTGGTGAGGAGGAATAATAAAAGTCTGCGATTTTGACGGAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK120237 [AAAACATTCTTCAGTTGATCTTGAGATTAAGTCACTCCTCCATCCCATCTCAAGAACTGATCAA GGAAAGGAAAAAAAATGGCA CTGAGGAGAATAATCAAGGAGCTCAAGGACCTTCAGAGGGATCCGCCGACTTCCTGCAGCGCCGGGC CTGTGTCTGATGACATGTTCCACTGGCAAGCAACAATCATGGGGCCCAATGACAGCCCCTACTCTGGAGGAGTGTTCCTGGTGACCATCCACTT CCCTCCTGACTACCATTTCAAGCCTCCAAAGGTGGCATTCAAGACCAAGGTGTTCCATCCAAACATAAACAGCAATGGCAACATCTGCCTTGACATCCTCAAGGACCAGTGGAGCCCAGCTCTCACCATCTCCAA GGTTCTTCTGTCGATC TGCTCGCTGCTGACGGACCCGAACCCGGACGATCCGCTGGTGCCGGAGATCGCTCATATGTGCAAGACTGATCGCCTCAGATACGAATCCACCGCAAGAGGCTGGACGCAGAAGTACGCCATGGGCTAAGCTTAGCTGCAAGCTAGCTAATTGCAGCTGAAATGGCAATTGGATTTGGATTTGGATGCAGGGGACAATCAGTCAATCACCAGCATGTCGATTAGAATTCAGAAATATAGATCGTGCCATAAAAAAAGATAGTAATAATTCTTGCTTGCAATTATTAGGATTGTTGTTGCAAATCTGAATCATCGTTATCATCTAACCTATAATCAAAAACCATCGTCTTCTTGGTGAGGAGGAATAATAAAAGTCTGCGATTTTGACGGAAttattgttc ] [+] EMBL CF294377 [AAAACATTCTTCAGTTGATCTTGAGATTAAGTCACTCCTCCATCCCATCTCAAGAACTGATCAA GGAAAGGAAAAAAAATGGCA CTGAGGAGAATAATCAAGGAGCTCAAGGACCTTCAGAGGGATCCGCCGACTTCCTGCAGCGCCGGGC CTGTGTCTGATGACATGTTCCACTGGCAAGCAACAATCATGGGGCCCAATGACAGCCCCTACTCTGGAGGAGTGTTCCTGGTGACCATCCACTT CCCTCCTGACTACCCTTTCAAGCCTCCAAAGGTGGCATTCAAGACCAAGGTGTTCCATCCAAACATAAACAGCAATGGCAACATCTGCCTTGACATCCTCAAGGACCAGTGGAGCCCAGCTCTCACCATCTCCAA GGTTCTTCTGTCGATC TGCTCGCTGCTGACGGACCCGAACCCGGACGATCCGCTGGTGCCGGAGATCGCTCATATGTGCAAGACTGATCGCCTCAGATACGAATCCACCGCAAGAGGCTGGACGCAGAAGTACGCCATGGGCTAAGCTTAGCTGCAAGCTAGCTAATTGCAGCTGAAATGGCAATTGGATTTGG ] [+] EMBL CF300400 [AAAACATTCTTCAGTTGATCTTGACATTAAGTCACTCCTCCATCCCATCTCAAGAACTGATCAAaaaa ] [-] EMBL CF300399 [ AAACATTCTTCAGTTGATCTTGAGATTAAGTCACTCCTCCATCCCATCTCAAGAACTGATCAA AAA AAAAAAA ] [+] EMBL CF326530 [ gCTTCAGTTGATCTTGAGATTAAGTCACTCCTCCATCCCATCTCAAGAACTGATCAAGGGAAAGGAAAAAAAATGGCATCTGAGGAGAATAATCAAGGAGCTCAAGGACCTTCAGAGGGATCCGCCGA ] [+] EMBL CF293966 [ TTCAGTTGATCTTGAGATTAAGTCACTCCTCCATCCCATCTCAAGAACTGATCAA GGAAAGGAAAAAAAATGGCA CTGAGGAGAATAATCAAGGAGCTCAAGGACCTTCAGAGGGATCCGCCGACTTCCTGCAGCGCCGGGC CTGTGTCTGATGACATGTTCCACTGGCAAGCAACAATCATGGGGCCCAATGACAGCCCCTACTCTGGAGGAGTGTTCCTGGTGACCATCCACTT CCCTCCTGACTACCCTTTCAAGCCTCCAAAGGTGGCATTCAAGACCAAGGTGTTCCATCCAAACATAAACAGCAATGGCAACATCTGCCTTGACATCCTCAAGGACCAGTGGAGCCCAGCTCTCACCATCTCCAA GGTTCTTCTGTCGATC TGCTCGCTGCTGACGGACCCGAACCCGGACGATCCGCTGGTGCCGGAGATCGC ] [+] EMBL OSS4285A [ TCAGTTGATCTTGAGATTAAGTCACTCCTCCATCCCATCTCAAGAACTGATCAA GGAAAGGAAAAAAAATGGCA CTGAGGAGAATAATCAAGGAGCTCAAGGACCTTCAGAGGGATCCGCCGACTTCCTGCAGCGCCGGGC CTGTGTCTGATGACATGTTCCACTGGCAAGCAACAATCATGGGGCCCAATGACAGCCCCTACTCTGGAGGAGTGTTCCTGGTGACCATCCACTT CCCTCCTGACTACCCTTTCAAGCCTCCAAAGGTGGCATTCAAGACCAAGGTGTTCCATCCAAACATAAACAGCAATGGCAACATCTGCCTTGACATCCTCAAGGACCAGTGGAGCCCAGCTCTCACCATCTCCAAGGGTTCTTCTGTCGGTCTTGCTCGCTGCTGACGGNCCCGAACCCGGACGNTCCGCTGGTGCCGGAGGTC ] [+] EMBL CF296051 [ TCCCATCTCAAGAACTGATCAA GGAAAGGAAAAAAAATGGCA CTGAGGAGAATAATCAAGGTTTTCAAGGACCTTCAGAGGGATCCGCCGACTTCCTGCAGCGCCGGGCTTTGT TCTGANGACATGTTCCATTGTCAAGCAACAATCATGGGGCCCAATGACAGCCCCTACTCTGGAGGAGTGTTCCTGGTGACCACCCACTT CCCTCCTGACTACCCTTTCAAGCCTCCAAAGGTGGCATTCAAGACCAAGGTGTTCCATCCAAACATAAACAGCAATGGCAACATCTGCCTTGACATC ] [-] EMBL CA758973 [ gacgagacaAGGGGGATCCGCCGACTTCCTGCAGCGCCGGGC CTGTGTTTGATGACATGTTCCACTGGCAAGCAACAATCATGGGGCCCAATGACAGCCCCTACTCTGGAGGAGTGTTCCTGGTGACCATCCACTTCCCCTCCTGACTACCCTTTCAAGCCTCCAAAGGTGGCATTCAAGACCAAGGTGTTCCATCCAAACATAAACAGCAATGGCAACATCTGCCTTGACATCCTCAAGGACCAGTGGAGCCCAGCTCTCACCATCTCCAA GGTTCTTCTGTCGATC TGCTCGCTGCTGACGGACCCGAACCCGGACGATCCGCTGGTGCCGGAGATCGCTTATATGTGCAAGACTGATCGCCTCAGATACGAATCCCCCGCAAGAGGCTGGACGCAGAAGTACGCCATGGGCTAAGCTTAGCTGCCAGCTAGCTAATTGCAGCTGAAATGGCAATTGGATTTGGATTTGGATGCAGGGGACAATCAGTCAATCCCCAGCATGTCGATTAGAATTCAGAAATATAGATCGTGCCATAAAAAAAGATAGTAATAATTCTTGCTTGCAATTATTAGGATTGTTGTTGCAAATTTGAATCATCGTTATCATCTAACCTATAATAAAAAACCATTGTTTTCTTGGTGAGGAGGAATAATAAAAGTTTGCGATTTTGGCGAAAAAAAAAAAAAAA ] [-] EMBL CF293965 [ GCCTCCAAAGGTGGCATTCAAGACCAAGGTGTTCCATCCAAACATAAACAGCAATGGCAACATCTGCCTTGACATCCTCAAGGACCAGTGGAGCCCAGCTCTCACCATCTCCAA GGTTCTTCTGTCGATC TGCTCGCTGCTGACGGACCCGAACCCGGACGATCCGCTGGTGCCGGAGATCGCTCATATGTGCAAGACTGATCGCCTCAGATACGAATCCACCGCAAGAGGCTGGACGCAGAAGTACGCCATGGGCTAAGCTTAGCTGCAAGCTAGCTAATTGCAGCTGAAATGGCAATTGGATTTGGATTTGGATGCAGGGGACAATCAGTCAATCACCAGCATGTCGATTAGAATTCAGAAATATAGATCGTGCCATAAAAAAAGATAGTAATAATTCTTGCTTGCAATTATTAGGATTGTTGTTGCAAATCTGAATCATCGTTATCATCTAACCTATAATCAAAAACCATCGTCTTCTTGGTGAGGAGGAATAATAAAAGTCTGCGATTTTGACGGAAAAAA ] [-] EMBL CF294378 [ TCTGTCGATC TGCTCGCTGCTGACGGACCCGAACCCGGACGATCCGCTGGTGCCGGAGATCGCTCATATGTGCAAGACTGATCGCCTCAGATACGAATCCACCGCAAGAGGCTGGACGCAGAAGTACGCCATGGGCTAAGCTTAGCTGCAAGCTAGCTAATTGCAGCTGAAATGGCAATTGGATTTGGATTTGGATGCAGGGGACAATCAGTCAATCACCAGCATGTCGATTAGAATTCAGAAATATAGATCGTGCCATAAAAAAAGATGGTAATAATTCTTGCTTGCAATTATTAGGATTGTTGTTGCAAATCTGAATCATCGTTATCATCTAACCTATAATCAAAAACCATCGTCTTCTTGGTGAGGAGGAATAATAAAAGTATGCGATTTTGACGGAAAAAA ] [+] EMBL CA754324 [ AATCTGAATCATCGTTATCATCTAACCTATAATCAAAAACCATCGTCTTCTTGGTGAGGAGGAATAATAAAAGTCTGCGATTTTGACGGANAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_14111#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 772 fasta sequence [CGCCGACTTCCTGCAGCGCCGGTGATACGCAAATCTTTGCATTACATCCTGAAAATCTTCAGATAGAAATGTTCAGAAACAAAATCAAGAAGATCTATTGCATTAA-ATTTTCTCATTGTTGTTGATGAATTGGTGAAAATTCAATCAGGGCCTGTGTCTGATGACATGTTCCACTGGCAAGCAACAATCATGGGGCCCAATGACAGCCCCTACTCTGGAGGAGTGTTCCTGGTGACCATCCACTTCCCTCCTGACTACCCTTTCAAGCCTCCAAAGGTGGCATTCAAGACCAAGGTGTTCCATCCAAACATAAACAGCAATGGCAACATCTGCCTTGACATCCTCAAGGACCAGTGGAGCCCAGCTCTCACCATCTCCAAGGTTCTTCTGTCGATCTGCTCGCTGCTGACGGACCCGAACCCGGACGATCCGCTGGTGCCGGAGATCGCTCATATGTGCAAGACTGATCGCCTCAGATACGAATCCACCGCAAGAGGCTGGACGCAGAAGTACGCCATGGGCTAAGCTTAGCTGCAAGCTAGCTAATTGCAGCTGAAATGGCAATTGGATTTGGATTTGGATGCAGGGGACAATCAGTCAATCACCAGCATGTCGATTAGAATTCAGAAATATAGATCGTGCCATAAAAAAAGATAGTAATAATTCTTGCTTGCAATTATTAGGATTGTTGTTGCAAATCTGAATCATCGTTATCATCTAACCTATAATCAAAAACCATCGTCTTCTTGGTGAGGAGGAATAATAAAAGTCT] [-] EMBL CB642754 [CGCCGACTTCCTGCAGCGCCGGTGATACGCAAATCTTTGCATTACATCCTGAAAATCTTCAGATAGAAATGTTCAGAAACAAAATCAAGAAGATCTATTGCATTAA ATTTTCTCATTGTTGTTGATGAATTGGTGAAAATTCAATCAGGGCCTGTGTCTGATGACATGTTCCACTGGCAAGCAACAATCATGGGGCCCAATGACAGCCCCTACTCTGGAGGAGTGTTCCTGGTGACCATCCACTTCCCTCCTGACTACCCTTTCAAGCCTCCAAAGGTGGCATTCAAGACCAAGGTGTTCCATCCAAACATAAACAGCAATGGCAACATCTGCCTTGACATCCTCAAGGACCAGTGGAGCCCAGCTCTCACCATCTCCAAGGTTCTTCTGTCGATCTGCTCGCTGCTGACGGACCCGAACCCGGACGATCCGCTGGTGCCGGAGATCGCTCATATGTGCAAGACTGATCGCCTCAGATACGAATCCACCGCAAGAGGCTGGACGCAGAAGTACGCCATGGGCTAAGCTTAGCTGCAAGCTAGCTAATTGCAGCTGAAATGGCAATTGGATTTGGATTTGGATGCAGGGGACAATCAGTCAATCACCAGCATGTCGATTAGAATTCAGAAATATAGATCGTGCCATAAAAAAAGATAGTAATAATTCTTGCTTGCAATTATTAGGATTGTTGTTGCAAATCTGAATCATCGTTATCATCTAACCTATAATCAAAAACCATCGTCTTCTTGGTGAGGAGGAATAATAAAAGTCT] [+] EMBL CB642753 [ AATCTTTGCATTACATCCTGAAAATCTTCAGATAGAAATGTTCAGAAACAAAATCAAGAAGATCTATTGCATTAAGATTTTCTCATTGTTGTTGATGAATTGGTGAAAATTCAATCAGGGCCTGTGTCTGATGACATGTTCCACTGGCAAGCAACAATCATGGGGCCCAATGACAGCCCCTACTCTGGAGGAGTGTTCCTGGTGACCATCCACTTCCCTCCTGACTACCCTTTCAAGCCTCCAAAGGTGGCATTCAAGACCAAGGTGTTCCATCCAAACATAAACAGCAATGGCAACATCTGCCTTGACATCCTCAAGGACCAGTGGAGCCCAGCTCTCACCATCTCCAAGGTTCTTCTGTCGATCTGCTCGCTGCTGACGGACCCGAACCCGGACGATCCGCTGGTGCCGGAGATCGCTCATATGTGCAAGACTGATCGCCTCAGATACGAATCCACCGCAAGAGGCTGGACGCAGAAGTACGCCATGGGCTAAGCTTAGCTGCAAGCTAGCTAATTGCAGCTGAAATGGCAATTGGATTTGGATTTGGATGCAAGGGACAATCAGTCAATCACCAGCATGTCGATTAGAATTCAGAAATA ] [-] EMBL CF296050 [ CCAAAGGTGGCATTCAAGACCAAGGTGTTCCATCCAAACATAAACAGCAATGGCAACATCTGCCTTGACATCCTCAAGGACCAGTGGAGCCCAGCTCTCACCATCTCCAAGGTTCTTCTGTCGATCTGCTCGCTGCTGACGGACCCGAACCCGGACGATCCGCTGGTGCCGGAGATCGCTCATATGTGCAAGACTGATCGCCTCAGATACGAATCCACCGCAAGAGGCTGGACGCAGAAGTACGCCATGGGCTAAGCTTAGCTGCAAGCTAGCTAATTGCAGCTGAAATGGCAATTGGATTTGGATTTGGATGCAGGGGACAATCAGTCAATCACCAGCATGTCGATTAGAATTCAGAAATATAGATCGTGCCATAAAAAAAGATAGTAATAATTCTTGCTTGCAATTATTAGGATTGTTGTTGCAAATCTGAATCATCGTTATCATCTAACCTATAATCAAAAACCATCGTCTTTTTGGTGAGGAGGAAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14111#0 AAAACATTCTTCAGTTGATCTTGAGATTAAGTCACTCCTCCATCCCATCTCAAGAACTGA 60 consensus_14111#1 -CGCCGACTTCCTGCAGCGCCGGTGATACGCAAATCTTTGCATTACATCCTGAAAATCTT 59 * * * * * * * *** * * *** **** * ** consensus_14111#0 TCAA-GGAAAGGAAAAAAAATGGCACTGAGGAGAATAAT--CAAGGAGCTCAAGGACCTT 117 consensus_14111#1 CAGATAGAAATGTTCAGAAACAAAATCAAGAAGATCTATTGCATTAAATTTTCTCATTGT 119 * **** * * *** * ** *** ** ** * * * * consensus_14111#0 CA--GAGGGATCCGCCGACTTCCTGCAGCGCCGGGCCTGTGTCTGATGACATGTTCCACT 175 consensus_14111#1 TGTTGATGAATTGGTGAAAATTCAAT----CAGGGCCTGTGTCTGATGACATGTTCCACT 175 ** * ** * * * * * **************************** consensus_14111#0 GGCAAGCAACAATCATGGGGCCCAATGACAGCCCCTACTCTGGAGGAGTGTTCCTGGTGA 235 consensus_14111#1 GGCAAGCAACAATCATGGGGCCCAATGACAGCCCCTACTCTGGAGGAGTGTTCCTGGTGA 235 ************************************************************ consensus_14111#0 CCATCCACTTCCCTCCTGACTACCCTTTCAAGCCTCCAAAGGTGGCATTCAAGACCAAGG 295 consensus_14111#1 CCATCCACTTCCCTCCTGACTACCCTTTCAAGCCTCCAAAGGTGGCATTCAAGACCAAGG 295 ************************************************************ consensus_14111#0 TGTTCCATCCAAACATAAACAGCAATGGCAACATCTGCCTTGACATCCTCAAGGACCAGT 355 consensus_14111#1 TGTTCCATCCAAACATAAACAGCAATGGCAACATCTGCCTTGACATCCTCAAGGACCAGT 355 ************************************************************ consensus_14111#0 GGAGCCCAGCTCTCACCATCTCCAAGGTTCTTCTGTCGATCTGCTCGCTGCTGACGGACC 415 consensus_14111#1 GGAGCCCAGCTCTCACCATCTCCAAGGTTCTTCTGTCGATCTGCTCGCTGCTGACGGACC 415 ************************************************************ consensus_14111#0 CGAACCCGGACGATCCGCTGGTGCCGGAGATCGCTCATATGTGCAAGACTGATCGCCTCA 475 consensus_14111#1 CGAACCCGGACGATCCGCTGGTGCCGGAGATCGCTCATATGTGCAAGACTGATCGCCTCA 475 ************************************************************ consensus_14111#0 GATACGAATCCACCGCAAGAGGCTGGACGCAGAAGTACGCCATGGGCTAAGCTTAGCTGC 535 consensus_14111#1 GATACGAATCCACCGCAAGAGGCTGGACGCAGAAGTACGCCATGGGCTAAGCTTAGCTGC 535 ************************************************************ consensus_14111#0 AAGCTAGCTAATTGCAGCTGAAATGGCAATTGGATTTGGATTTGGATGCAGGGGACAATC 595 consensus_14111#1 AAGCTAGCTAATTGCAGCTGAAATGGCAATTGGATTTGGATTTGGATGCAGGGGACAATC 595 ************************************************************ consensus_14111#0 AGTCAATCACCAGCATGTCGATTAGAATTCAGAAATATAGATCGTGCCATAAAAAAAGAT 655 consensus_14111#1 AGTCAATCACCAGCATGTCGATTAGAATTCAGAAATATAGATCGTGCCATAAAAAAAGAT 655 ************************************************************ consensus_14111#0 AGTAATAATTCTTGCTTGCAATTATTAGGATTGTTGTTGCAAATCTGAATCATCGTTATC 715 consensus_14111#1 AGTAATAATTCTTGCTTGCAATTATTAGGATTGTTGTTGCAAATCTGAATCATCGTTATC 715 ************************************************************ consensus_14111#0 ATCTAACCTATAATCAAAAACCATCGTCTTCTTGGTGAGGAGGAATAATAAAAGTCTGCG 775 consensus_14111#1 ATCTAACCTATAATCAAAAACCATCGTCTTCTTGGTGAGGAGGAATAATAAAAGTCT--- 772 ********************************************************* consensus_14111#0 ATTTTGACGGAAAAAAAAAAAAAAAAAAAAAAAAA 810 consensus_14111#1 ----------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||