These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14114#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1854 fasta sequence [CCAAGCTTCAACTTCAAGAACCCACCCACTTCTCCTCCTCTTCTCCATCCGCTGCGGCAAGCGCGCAATTCAGTTGCTGCGAGCTCGCTCGCCGGCGACAATGGCGGCGGCGGTGGCGGTGGTGGTTGGTTGCGTTCTTCTTGGTGGTGTGTGGGGGTTCCCGGAGGAGGATTTGGTGGCGCGGCTGCCGGGGCAGCCCGTCGTCGGGTTCAGGCAGTTCGCCGGATACGTCGACGTCGACGAGAAGGCCGGGAGGAGCCTCTTCTACTACTTCGCCGAGGCGGCGGAGGGCGCCGCCGCCAAGCCGCTCACCCTCTGGCTCAACGGAGGTCCTGGATGTTCTTCGGTTGGAGGTGGCGCGTTCACAGAGCTCGGCCCATTTTATCCGAGAGGAGATGGCAGAGGCCTGAGATTGAACAAGAAGTCTTGGAACAAAGTATCCAATCTTCTGTTTGTTGAATCACCGGCTGGAGTTGGATGGTCCTACTCCAACACTTCATCAGATTACAATACTGGCGATGCACAGACC-GCTAATGACATGTACAAATTTCTGTT-GGGATGGTACAAGAA-GTTCCCTG-AATACAGGTCAAGAGGGCTACTTCTTAGTGGAGAGAGCTATGCAGGGCATTATATACCGCAACTCACCGATGTACTTCTCACACATAATGAGAAATCAAATGGGTTCAAATTCAACATCAAGGGAGTAGCTATCGGGAATCCGCTTCTCAAGCTTGACAGAGATGTCCCCGCAACATATGAGTATTTCTGGTCCCATGGCATGATCTCTGACGAAATATTTCTATCAATCAGCCACAGTTGTGATTTTGAGGACTATACCTTTAGCAACCCCCACAATGAGAGCAAGTCATGCAATGATGCCATTGCAGAGGCAAACAGTATAGTTGGGGATTATGTGAACAATTACGATGTTATTCTTGATGTGTGCTACCCATCAATTGTGATGCAGGAGCTACGGCTGCGGAAATATGTGACTAAAATGAGTGTAGGTGTGGATGTTTGTATGACTTACGAAAGGTATTTCTATTTCAACCTTCCAGAAGTGCAGCAAGCTCTTCATGCTAACAGAACACATTTGCCCTATGGCTGGAGCATGTGCAGCGATGTGCTGAACTACAGCAATAAGGATGGCAACATCAACATCTTGCCATTACTTCAGAGAATTGTAGAGCACAAAATACCAGTTTGGGTGTTCAGTGGAGATCAAGACTCTGTGGTGCCCCTATTGGGCTCCCGAACTCTTGTACGAGAGCTAGCTCATGACATGGGCTTGCATGTCACAGTCCCATACAGCAGCTGGTTCCGCAGAGGGCAGGTTGGAGGCTGGGTAACAGAGTATGGTAATATTCTGACCTTTGCGACGGTGCGAGGAGCATCTCACATGGTGCCATTTGCGCAGCCAGACCG-AGCTCTCGGACTTTTTCAATCATTCGCACTTGGACGGAGACTCCCGAATACAACCCACCCACCTATTAACTAAGTGTACCTACGAAAGGAGCTGAAGATACAAACAAATAGTCTAGGATTTTCAGTTTTGCTACAGAAGATTAGTTCATAAGGGTGTATTAGATGGTCAAATACGAATATTTTATCTATTAGAGAGAACAGGGAAATAATACTAGATTAAATTCTTTATTGTTCTCTATCTGGATTGTCAGATTGCATTCCTGGAAGTCTGGAACATTGAGCAATCTGTATAACTATGTCATTTTA-GGGGTTTTGGGGGCACACTGCATTTTGCAACTGTACCTATCTATGTCTGAGGAATTTCATTAGTGCAAACTGATGGAAAAAGTTGGCTCATTGAAGAAGTTGCTGCCTAAAAAAAAAAAAAAA] [+] EMBL AK103461 [CCAAGCTTCAACTTCAAGAACCCACCCACTTCTCCTCCTCTTCTCCATCCGCTGCGGCAAGCGCGCAATTCAGTTGCTGCGAGCTCGCTCGCCGGCGACAATGGCGGCGGCGGTGGCGGTGGTGGTTGGTTGCGTTCTTCTTGGTGGTGTGTGGGGGTTCCCGGAGGAGGATTTGGTGGCGCGGCTGCCGGGGCAGCCCGTCGTCGGGTTCAGGCAGTTCGCCGGATACGTCGACGTCGACGAGAAGGCCGGGAGGAGCCTCTTCTACTACTTCGCCGAGGCGGCGGAGGGCGCCGCCGCCAAGCCGCTCACCCTCTGGCTCAACGGAGGTCCTGGATGTTCTTCGGTTGGAGGTGGCGCGTTCACAGAGCTCGGCCCATTTTATCCGAGAGGAGATGGCAGAGGCCTGAGATTGAACAAGAAGTCTTGGAACAAAGTATCCAATCTTCTGTTTGTTGAATCACCGGCTGGAGTTGGATGGTCCTACTCCAACACTTCATCAGATTACAATACTGGCGATGCACAGACC GCTAATGACATGTACAAATTTCTGTT GGGATGGTACAAGAA GTTCCCTG AATACAGGTCAAGAGGGCTACTTCTTAGTGGAGAGAGCTATGCAGGGCATTATATACCGCAACTCACCGATGTACTTCTCACACATAATGAGAAATCAAATGGGTTCAAATTCAACATCAAGGGAGTAGCTATCGGGAATCCGCTTCTCAAGCTTGACAGAGATGTCCCCGCAACATATGAGTATTTCTGGTCCCATGGCATGATCTCTGACGAAATATTTCTATCAATCAGCCACAGTTGTGATTTTGAGGACTATACCTTTAGCAACCCCCACAATGAGAGCAAGTCATGCAATGATGCCATTGCAGAGGCAAACAGTATAGTTGGGGATTATGTGAACAATTACGATGTTATTCTTGATGTGTGCTACCCATCAATTGTGATGCAGGAGCTACGGCTGCGGAAATATGTGACTAAAATGAGTGTAGGTGTGGATGTTTGTATGACTTACGAAAGGTATTTCTATTTCAACCTTCCAGAAGTGCAGCAAGCTCTTCATGCTAACAGAACACATTTGCCCTATGGCTGGAGCATGTGCAGCGATGTGCTGAACTACAGCAATAAGGATGGCAACATCAACATCTTGCCATTACTTCAGAGAATTGTAGAGCACAAAATACCAGTTTGGGTGTTCAGTGGAGATCAAGACTCTGTGGTGCCCCTATTGGGCTCCCGAACTCTTGTACGAGAGCTAGCTCATGACATGGGCTTGCATGTCACAGTCCCATACAGCAGCTGGTTCCGCAGAGGGCAGGTTGGAGGCTGGGTAACAGAGTATGGTAATATTCTGACCTTTGCGACGGTGCGAGGAGCATCTCACATGGTGCCATTTGCGCAGCCAGACCG AGCTCTCGGACTTTTTCAATCATTCGCACTTGGACGGAGACTCCAGAATACAACCCACCCACCTATTAACTAAGTGTACCTACGAAAGGAGCTGAAGATACAAACAAATAGTCTAGGATTTTCAGTTTTGCTACAGAAGATTAGTTCATAAGGGTGTATTAGATGGTCAAATACGAATATTTTATCTATTAGAGAGAACAGGGAAATAATACTAGATTAAATTCTTTATTGTTCTCTATCTGGATTGTCAGATTGCATTCCTGGAAGTCTGGAACATTGAGCAATCTGTATAACTATGTCATTTTA GGGG ] [+] EMBL OSS0012A [ cgagGTCGGGTTCAGGCAGTTCGCCGGATACGTCGACGTCGACGAGAAGGCCGGGAGGAGCCTCTTCTACTACTTCGCCGAGGCGGCGGAGGGCGCCG CGCCAAGCCGCTCACCCTCTGGCTCAACGGAGGTCCTGGATGTTCTTCGGTTGGAGGTGGCGCGTTCACAGAGCTCGGCCCATTTTATCCGAGAGGAGATGGCAGAGGCCTGAGATTGAACAAGAAGTCTTGGAACAAAGTATCCAATCTTCTGTTTGTTGAATCACCGGCTGGAGTTGGATGGTCCTACTCCAACANTTNATCAGATTACAATACTGGCGATGNACAGACC G TAATGACATGTACAAATTTCTGTT GGGATGGTACAAGAA GTTCCCTGAAATACAGGT ] [+] EMBL CF323229 [ TTCGCCGGATACGTCGACGTCGACGAGAAGGCCGGGAGGAGCCTCTTCTACTACTTCGCCGAGGCGGCGGAGGGCGCCGCCGCCAAGCCGCTCACCCTCTGGCTCAACGGAGGTCCTGGATGTTCTTCGGTTGGAGGTGGCGCGTTCACAGAGCTCGGCCCATTTTATCCGAGAGGAGATGGCAGAGGCCTGAGATTGAACAAGAAGTCTTGGAACAAAGTATCCAATCTTCTGTTTGTTGAATCACCGGCTGGAGTTGGATGGTCCTACTCCAACACTTCATCAGATTACAATACTGGCGATGCACAGACC GCTAATGACATGTACAAATTTCTGTT GGGATGGTACAAGAA GTTCCCTG AATACAGGTCAAGAGGGCTACTTCTTAGTGGAGAGAGCTATGCAGGGCATTATATACCGCAACTCACCGATGTACTTCTCACACATAATGAGAAATCAAATGGGTTCAAATTCAACATCAAGGGAGTAGCTATCGGGAATCCGCTTCTCAAGCTTGACAGAGATGTCCCCGCAACATATGAGTATTTCTGGTCCCATGGCATGATCTCTGACGAAATATTT ] [+] EMBL AU062698 [ CAAGCCGCTCACCCTCTGGCTCAACGGAGGTCCTGGNTGTTCTTCGGTTGGAGGTGGCGAGTTCACAGAGCTCGGACCATTTTNTCCGAGAGGAGATGGCAGANGCCTGGGATTGAACAAGAAGTCTTGGAACAAAGTATCCAATCTTCTGTTTGTTGAATCACCGGCTGGAGTTGGATGGTCCTACTCCAACACTTCATCAGATTACAATACTGGCGATGCACAGACCNGCTAATGACATGTACAAATTTCTGTTGGGGNTGGTACAAGAAGGTTCCCTGNAATACAGGTCAAGAGn ] [+] EMBL AU062761 [ TCACAGTCCCATACAGCAGCTGGTTCCGCAGAGGGCAGGTTNGNGGCTGGGTAACAGAGTATGGTAATATTCTNACCTTTGCGACGGTGCGAGGAGCATNTCACATGGTGCCATTTACGNAG CAGACCGCAGCTCTCGGACTTTTTNAATNATTCGCACTTGGNCGGAGACTCCCGAATACANCCCACCCACCTATTAACTAAGTGTACCTACGTAAGGAGCTGANGATACAAACAA ] [+] EMBL CA756595 [ GAGTATGGTAATATTCTGACCTTTGCGACGGTGCGAGGAGCATCTCACATGGTGCCATTTGCGCAGCCAGACCG AGCTCTCGGACTTTTTCAATCATTCGCACTTGGACGGAGACTCCCGAATACAACCCACCCACCTATTAACTAAGTGTACCTACNAAAGGAGCTGAAGATACAAACAAATAGTCTAGGATTTTCAGTTTTGCTACAGAAGATTAGTTCATAAGGGTGTTTTAGATGGTCAAATACGAATATTTTATCTATTAGAGAGAACAGGGAAATAATACTAGATTAAATTCTTTATTGTTCTCTATCTGGATTGTCAGATTGCATTCCTGGAAGTCTGGAACATTGAGCAATCTGTATAACTATGTCATTTTANGGGGTTTTGGGGGCACACTGCATTTTGCAACTGTACCTATCTATGTCTGAGGAATTTCATTAGTGCAAACTGATGGAAAAGGTTGGCTCATTGAAGAAGTTGCTGCCT ] [+] EMBL AU062889 [ TAATATTCTGACCTTTGCGACGGTGCGAGGAGCATCTCACATGGTGCCATTTGCGCAGCANGACCG AGCTCTCGGACTTTTTCAATCATTCGCACTTGGACGGAGACTCCCGAATACAACCCACCCACCTATTAACTAAGTGTACCTACGAAAGGAGCTGAAGATACAAACAAATAGTCTAGGATTTTCAGTTTTGCTACAGAAGATTAGTTCATAAGGGTGTATTAGATGGTCAAATACGAATATTTTATCTATTAGAGAGAACAGGGAAATAATACTAGATTAA ] [+] EMBL AU222685 [ CGACGGTGCGAGGAGCATCTCACATGGTGCCATTTGCGCAGCCAGACCG AGCTCTCGGACTTTTTCAATCATTCGCACTTGGACGGAGACTCCCGAATACAACCCACCCACCTATTAACTAAGTGTACCTACGAAAGGAGCTGAAGATACAAACAAATAGTCTAGGATTTTCAGTTTTGCTACAGAAGATTAGTTCATAAGGGTGTATTAGATGGTCAAATACGAATATTTTATCTATTAGAGAGAACAGGGAAATAATACTAGATTAAATTCTTTATTGTTCTCTATCTGGATTGTCAGATTGCATTCCTGGAAGTCTGGAACATTGAGCAATCTGTATAACTATGTCATTTTA GGGGTTTTGGGGGCACACTGCATTTTGCAACTGTACCTATCTATGTCTGAGGAATTTCATTAGTGCAAACTGATGGAAAAAGTTGGCTCAaaaaaaa ] [+] EMBL AU166571 [ GCGCAGCCAGACCG AGCTCTCGGACTTTTTCAATCATTCGCACTTGGACGGAGACTCCCGAATACAACCCACCCACCTATTAACTAAGTGTACCTACGAAAGGAGCTGAAGATACAAACAAATAGTCTAGGATTTTCAGTTTTGCTACAGAAGATTAGTTCATAAGGGTGTATTAGATGGTCAAATACGAATATTTTATCTATTAGAGAGAACAGGGAAATAATACTAGATTAAATTCTTTATTGTTCTCTATCTGGATTGTCAGATTGCATTCCTGGAAGTNTGGAACATTGAGCAATCTGTATAACTATGTCATTTTA GGGGTTTTGGGGGCACACTGCATTTTGCAACTGNACCTATCTATGTCTGAGGAATTTCATTAGTGCAAACTGATGGAAAAAGTTGGCTCATTGAAGAAGTTGCTGCCTAAAAAAAAAAAAAAA] consensusID : consensus_14114#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 623 fasta sequence [GAAGTTTANTGGGTAAATATNTCTGACCTTTGCGGACGGTGCGGAAGGAGCATCTCACATGGTGCCATTTGCCGCAGCCAGACTCGAGCTCTCGGACCTTTTTCAATCATTCGCACTTGGACGGAGACTCCCCGAATACAACCCACCCTACCTATTAACTTAACGTGTACCTACGAAAGGATGCTGAAGATCACATACCTAATAGTGCTAGGATTGTTCAGTTTTGCTACAGAAGATTAGTTCATAAGGGTGTGATTGAGCATGGGTCCAAATACGAATATTTTGATGCTGATGTAGACGAGAACAGGGATAATTAATGACTAGATTCAAATGTGCTTTGTATTCGTTGCTCTATCTGGATTGTCACGATTGCATTCCTGGAAGTCCTGGAACCCTGACGCAATCTGTATAACTATGTCATGTTTAGGGGTTTTCGGCGGGCACACTGCATTTNTGCAACTTTACCTATTCTATGTCTGAGGAATTTCATTAGTGCNAACTGATGGAAAAGGTTGGCTCATTGAAGAAGTNGCTGCCTAAATTTTAGAATGTAATGTTCTAATTGAGTCTATCTAATTGGAGTATTCGTGATTATACATATGCTCGGGATCTTACTGAAAAAA] [+] EMBL BQ907225 [GAAGTTTANTGGGTAAATATNTCTGACCTTTGCGGACGGTGCGGAAGGAGCATCTCACATGGTGCCATTTGCCGCAGCCAGACTCGAGCTCTCGGACCTTTTTCAATCATTCGCACTTGGACGGAGACTCCCCGAATACAACCCACCCTACCTATTAACTTAACGTGTACCTACGAAAGGATGCTGAAGATCACATACCTAATAGTGCTAGGATTGTTCAGTTTTGCTACAGAAGATTAGTTCATAAGGGTGTGATTGAGCATGGGTCCAAATACGAATATTTTGATGCTGATGTAGACGAGAACAGGGATAATTAATGACTAGATTCAAATGTGCTTTGTATTCGTTGCTCTATCTGGATTGTCACGATTGCATTCCTGGAAGTCCTGGAACCCTGACGCAATCTGTATAACTATGTCATGTTTAGGGGTTTTCGGCGGGCACACTGCATTTNTGCAACTTTACCTATTCTATGTCTGAGGAATTTCATTAGTGCNAACTGATGGAAAAGGTTGGCTCATTGAAGAAGTNGCTGCCTAAATTTTAGAATGTAATGTTCTAATTGAGTCTATCTAATTGGAGTATTCGTGATTATACATATGCTCGGGATCTTACTGAAAAAA] consensusID : consensus_14114#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 476 fasta sequence [TCAAGTGGAGATCAAGACTCTGTGGGCCCCTATTGGGCTCCCGAACTCTTGTACGAGAGCTAGCTCATGACACTGGGCTTGCATGTCACAGTCCCATACAGCAGCTGGTTCCCCAGAGGCCCGTTGGAGCTGGGTACCCGAGTATGGTAATATTCTGACCTTTGCGACGGTGCGAGGACACATCTCACCTGGTCCCCATTTGCGCAGCCCAGACCGAGCTTCTCGGACATTTTTCAATCATTCGCACTTGGACGGAGACTCCCGAATCAAACCCCACCCCCCTATTAACTAAGTGTACCTACGAAAGGAGCTGAAGATCACCACACCAAATAGTCTAGGATTTCTCCAGTTTTGCTCACCAGAAGATTAGTTCATAAGGGTGTATTAGATGGCTCCAAATACGAATATTTTATCTATTAGAGAGACCCGGGAAATAATACTAAATTAAATTCTTTATTTTTCTCTTAAAAAAAAAA] [+] EMBL BI797155 [TCAAGTGGAGATCAAGACTCTGTGGGCCCCTATTGGGCTCCCGAACTCTTGTACGAGAGCTAGCTCATGACACTGGGCTTGCATGTCACAGTCCCATACAGCAGCTGGTTCCCCAGAGGCCCGTTGGAGCTGGGTACCCGAGTATGGTAATATTCTGACCTTTGCGACGGTGCGAGGACACATCTCACCTGGTCCCCATTTGCGCAGCCCAGACCGAGCTTCTCGGACATTTTTCAATCATTCGCACTTGGACGGAGACTCCCGAATCAAACCCCACCCCCCTATTAACTAAGTGTACCTACGAAAGGAGCTGAAGATCACCACACCAAATAGTCTAGGATTTCTCCAGTTTTGCTCACCAGAAGATTAGTTCATAAGGGTGTATTAGATGGCTCCAAATACGAATATTTTATCTATTAGAGAGACCCGGGAAATAATACTAAATTAAATTCTTTATTTTTCTCTTAAAAAAAAAA] consensusID : consensus_14114#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 442 fasta sequence [GCATCTCACATGGTGCCATTTGCGCAGCCAGACCGAGCTCTCGGACTTTTTCAATCATTCGCACTTGGACGGAGACTCCCGAATACAACCCACCCNCCTATTAACTAAGTGTACCTACGAAAGGAGCTGAAGATACAAACAAATAGTCTAGGATTTTCAGTTTTGCTACAGAAGATTAGTTCATAAGGGTGTATTAGATGGTCAAATACGAATATTTTATCTATTAGAGAGAACAGGGAAATAATACTAGATTAAATTCTTTATTGTTCTCTATCTGGATTGTCAGATTGCATTCCTGGAAGTCTGGAACATTGAGCNATCTGTATAACTATGTCATTTTAGGGGTTTTGGGGGCACACTGCATTTTGCAACTGTACCTATCTATGTNTGAGGAATTTCATTAGTGCAAACTGATGGAAAAAGTTGGCTCAAAAAAAAAAAA] [+] EMBL AU166669 [GCATCTCACATGGTGCCATTTGCGCAGCCAGACCGAGCTCTCGGACTTTTTCAATCATTCGCACTTGGACGGAGACTCCCGAATACAACCCACCCNCCTATTAACTAAGTGTACCTACGAAAGGAGCTGAAGATACAAACAAATAGTCTAGGATTTTCAGTTTTGCTACAGAAGATTAGTTCATAAGGGTGTATTAGATGGTCAAATACGAATATTTTATCTATTAGAGAGAACAGGGAAATAATACTAGATTAAATTCTTTATTGTTCTCTATCTGGATTGTCAGATTGCATTCCTGGAAGTCTGGAACATTGAGCNATCTGTATAACTATGTCATTTTAGGGGTTTTGGGGGCACACTGCATTTTGCAACTGTACCTATCTATGTNTGAGGAATTTCATTAGTGCAAACTGATGGAAAAAGTTGGCTCAAAAAAAAAAAA] consensusID : consensus_14114#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 271 fasta sequence [AACTTCAAGAACCCACCCACTTCTCCTCCTCTTCTCCATCCGCTGCGGCAAGGCGCANATTCAGTTGCTGCGAGCTCGCTCNGNGTCGACAATGGCGGCGGNTNGGCGGTGGTGGTTGGTTGCGTTCTTCTTGGTGGTGTGTGGGGGTTCCCGGAGAGGATTTGGTGGCGCGGCTGCCGGGGCACGTNCGTTCGGGTTCAGGCAGTTCGCCGGNATACGTCGACGTCGANATGAAGGCCGGGAGAGCCTCTTCTACTACTTCGCCGAGGCG] [+] EMBL C27220 [AACTTCAAGAACCCACCCACTTCTCCTCCTCTTCTCCATCCGCTGCGGCAAGGCGCANATTCAGTTGCTGCGAGCTCGCTCNGNGTCGACAATGGCGGCGGNTNGGCGGTGGTGGTTGGTTGCGTTCTTCTTGGTGGTGTGTGGGGGTTCCCGGAGAGGATTTGGTGGCGCGGCTGCCGGGGCACGTNCGTTCGGGTTCAGGCAGTTCGCCGGNATACGTCGACGTCGANATGAAGGCCGGGAGAGCCTCTTCTACTACTTCGCCGAGGCG] consensusID : consensus_14114#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 252 fasta sequence [CGGACTTTTTCAATCATTCGCACTTGGNCGGAGACTCCCGAATACAACCCNCCCNCCTATTAACTAAGTGTNCCTACGAAAGGAGCTGAAGATACAAACAAATAGTCTAGGATTTTCAGTTTTGCTACAGAAGATTAGTTCATAAGGGTGTATTAGATGGTCAAATACGAATATTTTATCTATTAGAGAGAACAGGGAAATAATACTAGATTAAATTCTTTATTGTTCTCAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU092482 [CGGACTTTTTCAATCATTCGCACTTGGNCGGAGACTCCCGAATACAACCCNCCCNCCTATTAACTAAGTGTNCCTACGAAAGGAGCTGAAGATACAAACAAATAGTCTAGGATTTTCAGTTTTGCTACAGAAGATTAGTTCATAAGGGTGTATTAGATGGTCAAATACGAATATTTTATCTATTAGAGAGAACAGGGAAATAATACTAGATTAAATTCTTTATTGTTCTCAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_14114#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 242 fasta sequence [ACGAGGNTTGCATGTCACAGTCCCATACAGCAGCTGGTTCCGCAGAGGGCAGGTTNGAGGNTGGGTAACAGAGTATGGTAATATTCTGACCTTTGCGACGGTGCGAGGAGCATCTCACATGGTGCCATTTGCGNAGCAGACCGAGCTNTNGGACTNTTNCAATCATTCGNACTTGGACGNAGACTNCCGGAATACANCCCACCCCACCTATTTAACCTAAGGTGTTACCTNCGGAAGGAAGC] [+] EMBL AU068615 [ACGAGGNTTGCATGTCACAGTCCCATACAGCAGCTGGTTCCGCAGAGGGCAGGTTNGAGGNTGGGTAACAGAGTATGGTAATATTCTGACCTTTGCGACGGTGCGAGGAGCATCTCACATGGTGCCATTTGCGNAGCAGACCGAGCTNTNGGACTNTTNCAATCATTCGNACTTGGACGNAGACTNCCGGAATACANCCCACCCCACCTATTTAACCTAAGGTGTTACCTNCGGAAGGAAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14114#1 ------------------------------------------------------------ consensus_14114#3 ------------------------------------------------------------ consensus_14114#5 ------------------------------------------------------------ consensus_14114#2 ------------------------------------------------------------ consensus_14114#6 ------------------------------------------------------------ consensus_14114#0 CCAAGCTTCAACTTCAAGAACCCACCCACTTCTCCTCCTCTTCTCCATCCGCTGCGGCAA 60 consensus_14114#4 ------------------------------------------------------------ consensus_14114#1 ------------------------------------------------------------ consensus_14114#3 ------------------------------------------------------------ consensus_14114#5 ------------------------------------------------------------ consensus_14114#2 ------------------------------------------------------------ consensus_14114#6 ------------------------------------------------------------ consensus_14114#0 GCGCGCAATTCAGTTGCTGCGAGCTCGCTCGCCGGCGACAATGGCGGCGGCGGTGGCGGT 120 consensus_14114#4 ------------------------------------------------------------ consensus_14114#1 ------------------------------------------------------------ consensus_14114#3 ------------------------------------------------------------ consensus_14114#5 ------------------------------------------------------------ consensus_14114#2 ------------------------------------------------------------ consensus_14114#6 ------------------------------------------------------------ consensus_14114#0 GGTGGTTGGTTGCGTTCTTCTTGGTGGTGTGTGGGGGTTCCCGGAGGAGGATTTGGTGGC 180 consensus_14114#4 ------------------------------------------------------------ consensus_14114#1 ------------------------------------------------------------ consensus_14114#3 ------------------------------------------------------------ consensus_14114#5 ------------------------------------------------------------ consensus_14114#2 ------------------------------------------------------------ consensus_14114#6 ------------------------------------------------------------ consensus_14114#0 GCGGCTGCCGGGGCAGCCCGTCGTCGGGTTCAGGCAGTTCGCCGGATACGTCGACGTCGA 240 consensus_14114#4 ------------------------------------------------------------ consensus_14114#1 ------------------------------------------------------------ consensus_14114#3 ------------------------------------------------------------ consensus_14114#5 ------------------------------------------------------------ consensus_14114#2 ------------------------------------------------------------ consensus_14114#6 ------------------------------------------------------------ consensus_14114#0 CGAGAAGGCCGGGAGGAGCCTCTTCTACTACTTCGCCGAGGCGGCGGAGGGCGCCGCCGC 300 consensus_14114#4 ------------------------------------------------------------ consensus_14114#1 ------------------------------------------------------------ consensus_14114#3 ------------------------------------------------------------ consensus_14114#5 ------------------------------------------------------------ consensus_14114#2 ------------------------------------------------------------ consensus_14114#6 ------------------------------------------------------------ consensus_14114#0 CAAGCCGCTCACCCTCTGGCTCAACGGAGGTCCTGGATGTTCTTCGGTTGGAGGTGGCGC 360 consensus_14114#4 ------------------------------------------------------------ consensus_14114#1 ------------------------------------------------------------ consensus_14114#3 ------------------------------------------------------------ consensus_14114#5 ------------------------------------------------------------ consensus_14114#2 ------------------------------------------------------------ consensus_14114#6 ------------------------------------------------------------ consensus_14114#0 GTTCACAGAGCTCGGCCCATTTTATCCGAGAGGAGATGGCAGAGGCCTGAGATTGAACAA 420 consensus_14114#4 ------------------------------------------------------------ consensus_14114#1 ------------------------------------------------------------ consensus_14114#3 ------------------------------------------------------------ consensus_14114#5 ------------------------------------------------------------ consensus_14114#2 ------------------------------------------------------------ consensus_14114#6 ------------------------------------------------------------ consensus_14114#0 GAAGTCTTGGAACAAAGTATCCAATCTTCTGTTTGTTGAATCACCGGCTGGAGTTGGATG 480 consensus_14114#4 ------------------------------------------------------------ consensus_14114#1 ------------------------------------------------------------ consensus_14114#3 ------------------------------------------------------------ consensus_14114#5 ------------------------------------------------------------ consensus_14114#2 ------------------------------------------------------------ consensus_14114#6 ------------------------------------------------------------ consensus_14114#0 GTCCTACTCCAACACTTCATCAGATTACAATACTGGCGATGCACAGACCGCTAATGACAT 540 consensus_14114#4 ------------------------------------------------------------ consensus_14114#1 ------------------------------------------------------------ consensus_14114#3 ------------------------------------------------------------ consensus_14114#5 ------------------------------------------------------------ consensus_14114#2 ------------------------------------------------------------ consensus_14114#6 ------------------------------------------------------------ consensus_14114#0 GTACAAATTTCTGTTGGGATGGTACAAGAAGTTCCCTGAATACAGGTCAAGAGGGCTACT 600 consensus_14114#4 ------------------------------------------------------------ consensus_14114#1 ------------------------------------------------------------ consensus_14114#3 ------------------------------------------------------------ consensus_14114#5 ------------------------------------------------------------ consensus_14114#2 ------------------------------------------------------------ consensus_14114#6 ------------------------------------------------------------ consensus_14114#0 TCTTAGTGGAGAGAGCTATGCAGGGCATTATATACCGCAACTCACCGATGTACTTCTCAC 660 consensus_14114#4 ------------------------------------------------------------ consensus_14114#1 ------------------------------------------------------------ consensus_14114#3 ------------------------------------------------------------ consensus_14114#5 ------------------------------------------------------------ consensus_14114#2 ------------------------------------------------------------ consensus_14114#6 ------------------------------------------------------------ consensus_14114#0 ACATAATGAGAAATCAAATGGGTTCAAATTCAACATCAAGGGAGTAGCTATCGGGAATCC 720 consensus_14114#4 ------------------------------------------------------------ consensus_14114#1 ------------------------------------------------------------ consensus_14114#3 ------------------------------------------------------------ consensus_14114#5 ------------------------------------------------------------ consensus_14114#2 ------------------------------------------------------------ consensus_14114#6 ------------------------------------------------------------ consensus_14114#0 GCTTCTCAAGCTTGACAGAGATGTCCCCGCAACATATGAGTATTTCTGGTCCCATGGCAT 780 consensus_14114#4 ------------------------------------------------------------ consensus_14114#1 ------------------------------------------------------------ consensus_14114#3 ------------------------------------------------------------ consensus_14114#5 ------------------------------------------------------------ consensus_14114#2 ------------------------------------------------------------ consensus_14114#6 ------------------------------------------------------------ consensus_14114#0 GATCTCTGACGAAATATTTCTATCAATCAGCCACAGTTGTGATTTTGAGGACTATACCTT 840 consensus_14114#4 ------------------------------------------------------------ consensus_14114#1 ------------------------------------------------------------ consensus_14114#3 ------------------------------------------------------------ consensus_14114#5 ------------------------------------------------------------ consensus_14114#2 ------------------------------------------------------------ consensus_14114#6 ------------------------------------------------------------ consensus_14114#0 TAGCAACCCCCACAATGAGAGCAAGTCATGCAATGATGCCATTGCAGAGGCAAACAGTAT 900 consensus_14114#4 ------------------------------------------------------------ consensus_14114#1 ------------------------------------------------------------ consensus_14114#3 ------------------------------------------------------------ consensus_14114#5 ------------------------------------------------------------ consensus_14114#2 ------------------------------------------------------------ consensus_14114#6 ------------------------------------------------------------ consensus_14114#0 AGTTGGGGATTATGTGAACAATTACGATGTTATTCTTGATGTGTGCTACCCATCAATTGT 960 consensus_14114#4 ------------------------------------------------------------ consensus_14114#1 ------------------------------------------------------------ consensus_14114#3 ------------------------------------------------------------ consensus_14114#5 ------------------------------------------------------------ consensus_14114#2 ------------------------------------------------------------ consensus_14114#6 ------------------------------------------------------------ consensus_14114#0 GATGCAGGAGCTACGGCTGCGGAAATATGTGACTAAAATGAGTGTAGGTGTGGATGTTTG 1020 consensus_14114#4 ------------------------------------------------------------ consensus_14114#1 ------------------------------------------------------------ consensus_14114#3 ------------------------------------------------------------ consensus_14114#5 ------------------------------------------------------------ consensus_14114#2 ------------------------------------------------------------ consensus_14114#6 ------------------------------------------------------------ consensus_14114#0 TATGACTTACGAAAGGTATTTCTATTTCAACCTTCCAGAAGTGCAGCAAGCTCTTCATGC 1080 consensus_14114#4 ------------------------------------------------------------ consensus_14114#1 ------------------------------------------------------------ consensus_14114#3 ------------------------------------------------------------ consensus_14114#5 ------------------------------------------------------------ consensus_14114#2 ------------------------------------------------------------ consensus_14114#6 ------------------------------------------------------------ consensus_14114#0 TAACAGAACACATTTGCCCTATGGCTGGAGCATGTGCAGCGATGTGCTGAACTACAGCAA 1140 consensus_14114#4 ------------------------------------------------------------ consensus_14114#1 ------------------------------------------------------------ consensus_14114#3 ------------------------------------------------------------ consensus_14114#5 ------------------------------------------------------------ consensus_14114#2 ------------------------------------------------------------ consensus_14114#6 ------------------------------------------------------------ consensus_14114#0 TAAGGATGGCAACATCAACATCTTGCCATTACTTCAGAGAATTGTAGAGCACAAAATACC 1200 consensus_14114#4 ------------------------------------------------------------ consensus_14114#1 ------------------------------------------------------------ consensus_14114#3 ------------------------------------------------------------ consensus_14114#5 ------------------------------------------------------------ consensus_14114#2 -----------TCAAGTGGAGATCAAGACTCTGTGGGCCCCTATTGGGCTCCCGAACTCT 49 consensus_14114#6 ------------------------------------------------------------ consensus_14114#0 AGTTTGGGTGTTCAGTGGAGATCAAGACTCTGTGGTGCCCCTATTGGGCTCCCGAACTCT 1260 consensus_14114#4 ------------------------------------------------------------ consensus_14114#1 ------------------------------------------------------------ consensus_14114#3 ------------------------------------------------------------ consensus_14114#5 ------------------------------------------------------------ consensus_14114#2 TGTACGAGAGCTAGCTCATGACACTGGGCTTGCATGTCACAGTCCCATACAGCAGCTGGT 109 consensus_14114#6 ----------------------ACGAGGNTTGCATGTCACAGTCCCATACAGCAGCTGGT 38 consensus_14114#0 TGTACGAGAGCTAGCTCATGACATG-GGCTTGCATGTCACAGTCCCATACAGCAGCTGGT 1319 consensus_14114#4 ------------------------------------------------------------ consensus_14114#1 ------------------------GAAGTTTANTGGGTAAATATNTCTGACCTTTGCGGA 36 consensus_14114#3 ------------------------------------------------------------ consensus_14114#5 ------------------------------------------------------------ consensus_14114#2 TCCCCAGAGGCCCG--TTGGAGCTGGGTACCCGAGTATGGTAATATTCTGACCTTTGCGA 167 consensus_14114#6 TCCGCAGAGGGCAGGTTNGAGGNTGGGTAACAGAGTATGGTAATATTCTGACCTTTGCGA 98 consensus_14114#0 TCCGCAGAGGGCAGGTTGGAGGCTGGGTAACAGAGTATGGTAATATTCTGACCTTTGCGA 1379 consensus_14114#4 ------------------------------------------------------------ consensus_14114#1 CGGTGCGGAAGGAGCATCTCACATGGTGCCATTTGCCGCAGCCAGACTCGAGCTC-TCGG 95 consensus_14114#3 -------------GCATCTCACATGGTGCCATTTGC-GCAGCCAGAC-CGAGCTC-TCGG 44 consensus_14114#5 ---------------------------------------------------------CGG 3 consensus_14114#2 CGGTGCGAGGAC-ACATCTCACCTGGTCCCCATTTGCGCAGCCCAGACCGAGCTTCTCGG 226 consensus_14114#6 CGGTGCGAGGA--GCATCTCACATGGTGCC-ATTTGCGNAGC--AGACCGAGCTN-TNGG 152 consensus_14114#0 CGGTGCGAGGA--GCATCTCACATGGTGCC-ATTTGCGCAGCC-AGACCGAGCTC-TCGG 1434 consensus_14114#4 ------------------------------AACTTCAAGAACCCA---CCCACTTCTCCT 27 consensus_14114#1 ACCTTTTTCAATCATTCGCACTTGGACGGAGACTCCCCGAATACAACCCACCCTACCTAT 155 consensus_14114#3 AC-TTTTTCAATCATTCGCACTTGGACGGAGACTCCC-GAATACAACCCACCCN-CCTAT 101 consensus_14114#5 AC-TTTTTCAATCATTCGCACTTGGNCGGAGACTCCC-GAATACAACCCNCCCN-CCTAT 60 consensus_14114#2 ACATTTTTCAATCATTCGCACTTGGACGGAGACTCCCGAATCAAACCCCACCCC-CCTAT 285 consensus_14114#6 AC-TNTTNCAATCATTCGNACTTGGACGNAGACTNCCGGAATACANCCCACCCCACCTAT 211 consensus_14114#0 AC-TTTTTCAATCATTCGCACTTGGACGGAGACTCCC-GAATACAACCCACCCA-CCTAT 1491 consensus_14114#4 CCTCTTCTCCATCCGCTGCGGCAAGGCGCANATTC---AGTTGCTGCGAGCTCGCTCNGN 84 * * * *** * * ** * * * * * * * consensus_14114#1 T-AACTTAACGTGT-ACCTACGAAAGGATGCTGAAGATCACATACCTAATAGTGCTAGGA 213 consensus_14114#3 T-AACTAA--GTGT-ACCTACGAAAGGA-GCTGAAGAT-ACAAACA-AATAGT-CTAGGA 153 consensus_14114#5 T-AACTAA--GTGT-NCCTACGAAAGGA-GCTGAAGAT-ACAAACA-AATAGT-CTAGGA 112 consensus_14114#2 T-AACT--AAGTGT-ACCTACGAAAGGAGCTGAAGATCACCACACCAAATAGTCTAGGAT 341 consensus_14114#6 TTAACCTAAGGTGTTACCTNCGGAAGGAAGC----------------------------- 242 consensus_14114#0 T-AACTAA--GTGT-ACCTACGAAAGGA-GCTGAAGAT-ACAAACA-AATAGT-CTAGGA 1543 consensus_14114#4 GTCGACAATGGCGG--CGGNTNGGCGGTGGTGGTTGGTTGCGTTCTTCTTGGT----GGT 138 * * * ** consensus_14114#1 TTGTTCAGTTTTGCTA--CAGAAGATTAGTTCATAAGGGTGTGATTGAGCATGGGTCCAA 271 consensus_14114#3 TT-TTCAGTTTTGCTA--CAGAAGATTAGTTCATAAGGGTGTATTAGA---TGG--TCAA 205 consensus_14114#5 TT-TTCAGTTTTGCTA--CAGAAGATTAGTTCATAAGGGTGTATTAGA---TGG--TCAA 164 consensus_14114#2 TTCTCCAGTTTTGCTCACCAGAAGATTAGTTCATAAGGGTGTATTAGA---TGGCTCCAA 398 consensus_14114#6 ------------------------------------------------------------ consensus_14114#0 TT-TTCAGTTTTGCTA--CAGAAGATTAGTTCATAAGGGTGTATTAGA---TGG--TCAA 1595 consensus_14114#4 GTGTGGGGGTTCCCGG---AGAGGATTTGGTGGCGCGGCTGCCGGGGCACGTNCGTTCGG 195 consensus_14114#1 ATACGAATATTTTGATGCTGATGTAGACGAGAACAGGGATAATTAATGACTAGATTCAAA 331 consensus_14114#3 ATACGAATATTTTATC-----TATTAGAGAGAACAGGG--AAATAAT-ACTAGATTAAAT 257 consensus_14114#5 ATACGAATATTTTATC-----TATTAGAGAGAACAGGG--AAATAAT-ACTAGATTAAAT 216 consensus_14114#2 ATACGAATATTTTATC-----TATTAGAGAGACCCGGG--AAATAAT-ACTAAATTAAAT 450 consensus_14114#6 ------------------------------------------------------------ consensus_14114#0 ATACGAATATTTTATC-----TATTAGAGAGAACAGGG--AAATAAT-ACTAGATTAAAT 1647 consensus_14114#4 GTTCAGGCAGTTCGCC-----GGNATACGTCGACGTCG--ANATGAAGGCCGGGAGAGCC 248 consensus_14114#1 TGTGCTTTGTATTCGTTGCTCTATCTGGATTGTCACGATTGCATTCCTGGAAGTCCTGGA 391 consensus_14114#3 T---CTTTAT---TGTT-CTCTATCTGGATTGTCA-GATTGCATTCCTGGAAGTC-TGGA 308 consensus_14114#5 T---CTTTAT---TGTT-CTCAAAAAAAAAAAAAAAAAAAAAA----------------- 252 consensus_14114#2 T---CTTTATTTTTCTCTTAAAAAAAAAA------------------------------- 476 consensus_14114#6 ------------------------------------------------------------ consensus_14114#0 T---CTTTAT---TGTT-CTCTATCTGGATTGTCA-GATTGCATTCCTGGAAGTC-TGGA 1698 consensus_14114#4 T---CTTCTACTACTTCGCCGAGGCG---------------------------------- 271 consensus_14114#1 ACCCTGACGCAATCTGTATAACTATGTCATGTTTAGGGGTTTTCGGCGGGCACACTGCAT 451 consensus_14114#3 ACATTGA-GCNATCTGTATAACTATGTCAT-TTTAGGGGTTTTGGG--GGCACACTGCAT 364 consensus_14114#5 ------------------------------------------------------------ consensus_14114#2 ------------------------------------------------------------ consensus_14114#6 ------------------------------------------------------------ consensus_14114#0 ACATTGA-GCAATCTGTATAACTATGTCAT-TTTAGGGGTTTTGGG--GGCACACTGCAT 1754 consensus_14114#4 ------------------------------------------------------------ consensus_14114#1 TTNTGCAACTTTACCTATTCTATGTCTGAGGAATTTCATTAGTGCNAACTGATGGAAAAG 511 consensus_14114#3 TTT-GCAACTGTACCTAT-CTATGTNTGAGGAATTTCATTAGTGCAAACTGATGGAAAAA 422 consensus_14114#5 ------------------------------------------------------------ consensus_14114#2 ------------------------------------------------------------ consensus_14114#6 ------------------------------------------------------------ consensus_14114#0 TTT-GCAACTGTACCTAT-CTATGTCTGAGGAATTTCATTAGTGCAAACTGATGGAAAAA 1812 consensus_14114#4 ------------------------------------------------------------ consensus_14114#1 GTTGGCTCATTGAAGAAGTNGCTGCCTAAATTTTAGAATGTAATGTTCTAATTGAGTCTA 571 consensus_14114#3 GTTGGCTCAAAAAAAAAAAA---------------------------------------- 442 consensus_14114#5 ------------------------------------------------------------ consensus_14114#2 ------------------------------------------------------------ consensus_14114#6 ------------------------------------------------------------ consensus_14114#0 GTTGGCTCATTGAAGAAGTTGCTGCCTAAAAAAAAAAAAAAA------------------ 1854 consensus_14114#4 ------------------------------------------------------------ consensus_14114#1 TCTAATTGGAGTATTCGTGATTATACATATGCTCGGGATCTTACTGAAAAAA 623 consensus_14114#3 ---------------------------------------------------- consensus_14114#5 ---------------------------------------------------- consensus_14114#2 ---------------------------------------------------- consensus_14114#6 ---------------------------------------------------- consensus_14114#0 ---------------------------------------------------- consensus_14114#4 ---------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||