These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14128#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1816 fasta sequence [AGATGGGTCGCCGCCGCTGCGGGTTGTGATCTTCCCGTGGCTGGCGTTCGGGCACCTGCTCCCGTACATGGAGCTCGCGGAGCGCATGGCGTCGAGGGGCCACCACGTGTCCTTCGTCTCCACGCCGCGGAACATCGCGCGCCTCCCGGCGCCGGTGGCGTCGGCGGTGGAGCTCGTGGCGCTGCCGCTCCCGCGGGTGGACGGCCTCGCCGACGGCGCCGAGTCCACCAACGACGTCCCCGACGACGAGCAGGGGCTCCTCATGGAGGCCTTCGACGGCCTCGCCGCTCCTTTCGCCGACTTCCTGGCCGCCGCGTGCGCCGACGACGGCGGCGGCGGAAGGAGGAGGAGGCCCGACTGGGTCATCGCCGACTCGTTCCACCACTGGGCCGCCCCCGCCGCCGCCCGGCACGGGGTGCCATGCGTGGCCCTCCTCCCGAGCGCCGCCGTCATGGCTGCGTGGGTCGTCCCGCCGCCGGCGACGTCGTCGCCGTCACCGGCGGCGGCTATGCCCAGCTACGAGTGGGAGAAGCTCAAGGCAAGCTTCCTCGCCGCCACCAGCCATGGCGCGTCGTCGTCGGCGTCGGGCGGCATGTCGCGGGCGACGCGCTGCTCCCTGACGCTCGAGAGGTGCACGCTGGCGGCCATGCGGAGCTGCGTCGAGTGGGAGCCCGAGCCGTTCCGGGCGGTGGCCGCGGGGCTCGGCAAGCCGCTCGTCCCCCTCGGCCTCCTCCCGCCATCGCCCGCCGGATCCCGCCGCCGCCGCGCCGTCGCCGGAGAAGAAGACGACGACTCCACCAACCCCCTCCTCCGCTGGCTGGACGCCCAGCCGCCCAGCTCGGTGCTGTACGTCGCGCTGGGGAGCGAGGTGCCACTGCGCGTCGACCAGGTGCACGAGCTCGCCCTCGGCCTGGAGCTCGCCGGCGCGCGCTTCCTCTGGGCTCTCAGAAAGCCCCGCTCCTCCTCCGCCGCCTCCGCCGCCGCCGCCGCCGCCGCCGCCATCCTCCCTCCCGGCTTCCAGGAACGCACGGCGAGCCGCGGCGTGGTCACCATGGGCTGGGCGCCGCAGATCGCCATACTGGAGCACGCCGCCGTGGGCGCGTTCCTGACGCACTGCGGCCGGAACTCGCTGGTGGAGGGGATCTCCGCCGGGAACCCCCTCGTCATGCTCCCCATCGCCGGCGACCAGGGCCCCAACGCGCGCCTCATGGAGGCGAGGAAGGTGGGGCTGCAGGTGGCGAGGGATGGCGCAGACGGCTCCTTCGACCGCCACGGCGTCGCCGCCGCGGTCCGGGCCGCCATTGTAGACGAAGAAACAAGGAAGGTGTTCGTCGCCAACGCCCTCAAGCTGCGAGAGGTGGTCGCCGACGAGGAGCTCCATGAGAGGTACATCGACGAGTTCATACACCAGCTTAGGTTAAGCTCTCCTACGTACCTCGCCAGCTCATGAATGAACCCCGTCTTGGGCCCATGGATT-GTAATCCCTACAAATAATAATGTCCTTCCTCCGTTTCAGAATATAAGTCATTTTAGTATTTTCCACATATATATTGATGTTAATAAATCTAGATAGATATATATATGTCTAGATTCATTAACATCAATATAAATATGAGAAATATTAAAATGACTTACATTGTGAAACAGAGGGAGTACGTACGTACGTGTGTATGTGTGTCTGTCTGTCATTTTGGATCATGCCATTGCAAATTTATTGTATTAAAAAAATACATGCATGTACGTACGTACGTGTGTCTGTCGGTCATTTTGGATCAAAAAAATGCAAATTTTACTGTATTAAAAAAATACCACTATT] [+] EMBL AK121202 [AGATGGGTCGCCGCCGCTGCGGGTTGTGATCTTCCCGTGGCTGGCGTTCGGGCACCTGCTCCCGTACATGGAGCTCGCGGAGCGCATGGCGTCGAGGGGCCACCACGTGTCCTTCGTCTCCACGCCGCGGAACATCGCGCGCCTCCCGGCGCCGGTGGCGTCGGCGGTGGAGCTCGTGGCGCTGCCGCTCCCGCGGGTGGACGGCCTCGCCGACGGCGCCGAGTCCACCAACGACGTCCCCGACGACGAGCAGGGGCTCCTCATGGAGGCCTTCGACGGCCTCGCCGCTCCTTTCGCCGACTTCCTGGCCGCCGCGTGCGCCGACGACGGCGGCGGCGGAAGGAGGAGGAGGCCCGACTGGGTCATCGCCGACTCGTTCCACCACTGGGCCGCCCCCGCCGCCGCCCGGCACGGGGTGCCATGCGTGGCCCTCCTCCCGAGCGCCGCCGTCATGGCTGCGTGGGTCGTCCCGCCGCCGGCGACGTCGTCGCCGTCACCGGCGGCGGCTATGCCCAGCTACGAGTGGGAGAAGCTCAAGGCAAGCTTCCTCGCCGCCACCAGCCATGGCGCGTCGTCGTCGGCGTCGGGCGGCATGTCGCGGGCGACGCGCTGCTCCCTGACGCTCGAGAGGTGCACGCTGGCGGCCATGCGGAGCTGCGTCGAGTGGGAGCCCGAGCCGTTCCGGGCGGTGGCCGCGGGGCTCGGCAAGCCGCTCGTCCCCCTCGGCCTCCTCCCGCCATCGCCCGCCGGATCCCGCCGCCGCCGCGCCGTCGCCGGAGAAGAAGACGACGACTCCACCAACCCCCTCCTCCGCTGGCTGGACGCCCAGCCGCCCAGCTCGGTGCTGTACGTCGCGCTGGGGAGCGAGGTGCCACTGCGCGTCGACCAGGTGCACGAGCTCGCCCTCGGCCTGGAGCTCGCCGGCGCGCGCTTCCTCTGGGCTCTCAGAAAGCCCCGCTCCTCCTCCGCCGCCTCCGCCGCCGCCGCCGCCGCCGCCGCCATCCTCCCTCCCGGCTTCCAGGAACGCACGGCGAGCCGCGGCGTGGTCACCATGGGCTGGGCGCCGCAGATCGCCATACTGGAGCACGCCGCCGTGGGCGCGTTCCTGACGCACTGCGGCCGGAACTCGCTGGTGGAGGGGATCTCCGCC GGAACCCCCTCGTCATGCTCCCCATCGCCGGCGACCAGGGCCCCAACGCGCGCCTCAAGGAGGCGAGGAAGGTGGGGCTGCAGGTGGCGAGGGATGGCGCAGACGGCTCCTTCGACCGCCACGGCGTCGCCGCCGCGGTCCGGGCCGCCATTGTAGACGAAGAAACAAGGAAGGTGTTCGTCGCCAACGCCCTCAAGCTGCGAGAGGTGGTCGCCGACGAGGAGCTCCATGAGAGGTACATCGACGAGTTCATACACCAGCTTAGGTTAAGCTCTCCTACGTACCTCGCCAGCTCATGAATGAACCCCGTCTTGGGCCCATGGATT GTAATCCCTACAAATAATAATGTCCTTCCTCCGTTTCAGAATATAAGTCATTTTAGTATTTTCCACATATATATTGATGTTAATAAATCTAGATAGATATATATATGTCTAGATTCATTAACATCAATATAAATATGAGAAATATTAAAATGACTTACATTGTGAAACAGAGGGAGTACGTACGTACGTGTGTATGTGTGTCTGTCTGTCATTTTGGATCATGCCATTGCAAATTTATTGTATTAAAAAAATACATGCATGTACGTACGTACGTGTGTCTGTCGGTCATTTTGGATCATGCCATTGCAAATTTTACTGTATTAAAAAAATACCACTATT] [+] EMBL AK060965 [ GATGGGTCGCCGCCGCTGCGGGTTGTGATCTTCCCGTGGCTGGCGTTCGGGCACCTGCTCCCGTACATGGAGCTCGCGGAGCGCATGGCGTCGAGGGGCCACCACGTGTCCTTCGTCTCCACGCCGCGGAACATCGCGCGCCTCCCGGCGCCGGTGGCGTCGGCGGTGGAGCTCGTGGCGCTGCCGCTCCCGCGGGTGGACGGCCTCGCCGACGGCGCCGAGTCCACCAACGACGTCCCCGACGACGAGCAGGGGCTCCTCATGGAGGCCTTCGACGGCCTCGCCGCTCCTTTCGCCGACTTCCTGGCCGCCGCGTGCGCCGACGACGGCGGCGGCGGAAGGAGGAGGAGGCCCGACTGGGTCATCGCCGACTCGTTCCACCACTGGGCCGCCCCCGCCGCCGCCCGGCACGGGGTGCCATGCGTGGCCCTCCTCCCGAGCGCCGCCGTCATGGCTGCGTGGGTCGTCCCGCCGCCGGCGACGTCGTCGCCGTCACCGGCGGCGGCTATGCCCAGCTACGAGTGGGAGAAGCTCAAGGCAAGCTTCCTCGCCGCCACCAGCCATGGCGCGTCGTCGTCGGCGTCGGGCGGCATGTCGCGGGCGACGCGCTGCTCCCTGACGCTCGAGAGGTGCACGCTGGCGGCCATGCGGAGCTGCGTCGAGTGGGAGCCCGAGCCGTTCCGGGCGGTGGCCGCGGGGCTCGGCAAGCCGCTCGTCCCCCTCGGCCTCCTCCCGCCATCGCCCGCCGGATCCCGCCGCCGCCGCGCCGTCGCCGGAGAAGAAGACGACGACTCCACCAACCCCCTCCTCCGCTGGCTGGACGCCCAGCCGCCCAGCTCGGTGCTGTACGTCGCGCTGGGGAGCGAGGTGCCACTGCGCGTCGACCAGGTGCACGAGCTCGCCCTCGGCCTGGAGCTCGCCGGCGCGCGCTTCCTCTGGGCTCTCAGAAAGCCCCGCTCCTCCTCCGCCGCCTCCGCCGCCGCCGCCGCCGCCGCCGCCATCCTCCCTCCCGGCTTCCAGGAACGCACGGCGAGCCGCGGCGTGGTCACCATGGGCTGGGCGCCGCAGATCGCCATACTGGAGCACGCCGCCGTGGGCGCGTTCCTGACGCACTGCGGCCGGAACTCGCTGGTGGAGGGGATCTCCGCCGGGAACCCCCTCGTCATGCTCCCCATCGCCGGCGACCAGGGCCCCAACGCGCGCCTCATGGAGGCGAGGAAGGTGGGGCTGCAGGTGGCGAGGGATGGCGCAGACGGCTCCTTCGACCGCCACGGCGTCGCCGCCGCGGTCCGGGCCGCCATTGTAGACGAAGAAACAAGGAAGGTGTTCGTCGCCAACGCCCTCAAGCTGCGAGAGGTGGTCGCCGACGAGGAGCTCCATGAGAGGTACATCGACGAGTTCATACACCAGCTTAGTTTAAGCTCTCCTACGTACCTCGCCAGCTCATGAATGAACCCCGTCTTGGGCCCATGGATT GTAATCCCTACAAATAATAATGTCCTTCCTCCGTTTCAGAATATAAGTCATTTTAGTATTTTCCACATATATATTGATGTTAATAAATCTAGATAGATATATATATGTCTAGATTCATTAACATCAATATAAATATGAGAAATATTAAAATGACTTACATTGTGAAACAGAGGGAGTACGTACGTACGTGTGTATGTGTGTCTGTCTGTCATTTTGGATCATGCCATTGCAAAT ] [+] EMBL CB645781 [ GCCGCCGCTGCGGGTTGTGATCTTCCCGTGGCTGGCGTTCGGGCACCTGCTCCCGTACATGGAGCTCGCGGAGCGCATGGCGTCGAGGGGCCACCACGTGTCCTTCGTCTCCACGCCGCGGAACATCGCGCGCCTCCCGGCGCCGGTGGCGTCGGCGGTGGAGCTCGTGGCGCTGCCGCTCCCGCGGGTGGACGGCCTCGCCGACGGCGCCGAGTCCACCAACGACGTCCCCGACGACGAGCAGGGGCTCCTCATGGAGGCCTTCGACGGCCTCGCCGCTCCTTTCGCCGACTTCCTGGCCGCCGCGTGCGCCGACGACGGCGGCGGCGGAAGGATGATGAAGCCCGACTGGGTCATCGCCGACTCGTTCCACCACTGGGCCGCCCCCGCCGCCGCCCGGCACGGGGTGCCATGCGTGGCCCTCCTCCCAAGCGCCGCCGTAATGGCTGCCTGGGTCGTGACGCCGCCGGCG ] [+] EMBL CB679661 [ GCTGCCGTTTGTGATCTTCCCGTGGCTGGCGTTCGGGCACCTGCTCCCGTACATGGAGCTCGCGGAGCGCATGGCGTCGAGGGGCCACCACGTGTCCTTCGTCTCCACGCCGCGGAACATCGCGCGCCTCCCGGCGCCGGTGGCGTCGGCGGTGGAGCTCGTGGCGCTGCCGCTCCCGCGGGTGGACGGCCTCGCCGACGGCGCCGAGTCCACCAACGACGTCCCCGACGACGAGCAGGGGCTCCTCATGGAGGCCTTCGACGGCCTCGCCGCTCCTTTCGCCGACTTCCTGGCCGCCGCGTGCGCCGACGACGGCGGCGGCGGAAGGAGGAGGACGCCCGACTGGGTCCTCTCCTAATCTGTCCACCACTGGGCCGACACCTCCGCC ] [+] EMBL CB637498 [ GTTGTGATCTTCCCGTGGCTGGCGTTCGGGCACCTGCTCCCGTACATGGAGCTCGCGGAGCGCATGGCGTCGAGGGGCCACCACGTGTCCTTCGTCTCCACGCCGCGGAACATCGCGCGCCTCCCGGCGCCGGTGGCGTCGGCGGTGGAGCTCGTGGCGCTGCCGCTCCCGCGGGTGGACGGCCTCGCCGACGGCGCCGAGTCCACCAACGACGTCCCCGACGACGAGCAGGGGCTCCTCATGGAGGCCTTCGACGGCCTCGCCGCTCCTTTCGCCGACTTCCTGGCCGCCGCGTGCGCCGACGACAGCGGCGGCGGAAGGAGGAGGAGGCCCGACTGGGTCATCGCCGACTCGTTCCACCACTGGGCCGCCCCCGCCGCCGCCCGGCACGGGGTGCCATGCGTGGCCCTCCTCCCGAGCGCCGCCGTCATGGCTGCGTGGGTCGTCCCG ] [+] EMBL CB664714 [ GTGATCTTCCCGTGGCTGGCGTTCGGGCACCTGCTCCCGTACATGGAGCTCGCGGAGCGCATGGCGTCGAGGGGCCACCACGTGTCCTTCGTCTCCACGCCGCGGAACATCGCGCGCCTCCCGGCGCCGGTGGCGTCGGCGGTGGAGCTCGTGGCGCTGCCGCTCCCGCGGGTGGACGGCCTCGCCGACGGCGCCGAGTCCACCAACGACGTCCCCGACGACGAGCAGGGGCTCCTCATGGAGGCCTTCGACGGCCTCGCCGCTCCTTTCGCCGACTTCCTGGCCGCCGCGTGCGCCG ] [-] EMBL CB637499 [ CTCGCCGACGGCGCCGAGTCCACCAACGACGTCCCCGACGACGAGCAGGGGCTCCTCATGGAGGCCTTCGACGGCCTCGCCGCTCCTTTCGCCGACTTCCTGGCCGCCGCGTGCGCCGACGACGGCGGCGGCGGAAGGAGGAGGAGGCCCGACTGGGTCATCGCCGACTCGTTCCACCANTGGGCCGCCCCCGCCGCCGCCCGGCACGGGGTGCCATGCGTGGCCCTCCTCCCGAGCGCCGCCGTCATGGCTGCGTGGGTCGTCCCGCCGCCGGCGACGTCGTCGCCGTCACCGGCGGCGGCTATGCCCAGCTACGAGTGGGAGAAGCTCAAGGCAAGCTTCCTCGCCGCCACCAGCCATGGCGCGTCGTCGTCGGCGTCGGGCGGCATGTCGCGGG ] [-] EMBL CB684061 [ CCGCCGCCGCCGCCATCCTCCCTCCCGGNTTCCAGGAACGCACGGCGAGCCGCGGCGTGGTCACCATGGGCTGGGCGCCGCAGATCGCCATACTGGAGCACGCCGCCGTGGGCGCGTTCCTGACGCACTGCGGCCGGAACTCGCTGGTGGAGGGGATCTCCGCCGGGAACCCCCTCGTCATGCTCCCCATCGCCGGCGACCAGGGCCCCAACGCGCGCCTCATGGAGGCGAGGAAGGTGGGGCTGCAGGTGGCGAGGGATGGCGCAGACGGCTCCTTCGACCGCCACGGCGTCGCCGCCGCGGTCCGGGCCGCCATTGTAGACGAAGAAACAAGGAAGGTGTTCGTCGCCAACGCCCTCAAGCTGCGAGAGGTGGTCGCCGACGAGGAGCTCCATGAGAGGTACATCGACGAGTTCATACACCAGCTTAGGTTAAGCTCTCCTACGTACCTCGCCAGCTCATGAATGAACCCCGTCTTGGGCCCATGGATT GTAATCCCTACAAATAATAATGTCCTTCCTCCGTTTCAGAATATAAGTCATTTTAGTATTTTCCACATATATATTGATGTTAATAAATCTAGATAGATATATATATGTCTAGATTCATTAACATCAATATAAATATGAGAAATATTAAAATGACTTACATTGTGAAACAGAGGGAGTACGTACGTACGTGTGTATGTGTGTCTGTCTGTCATTTTGGATCATGCCATTGCAAATTTATTGTAT ] [-] EMBL CB664715 [ TGGTCACCATGGGCTGGGCGCCGCAGATCGCCATACTGGAGCACGCCGCCGTGGGCGCGTTCCTGACGCACTGCGGCCGGAACTCGCTGGTGGAGGGGATCTCCGCCGGGAACCCCCTCGTCATGCTCCCCATCGCCGGCGACCAGGGCCCCAACGCGCGCCTCATGGAGGCGAGGAAGGTGGGGCTGCAGGTGGCGAGGGATGGCGCAGACGGCTCCTTCGACCGCCACGGCGTCGCCGCCGCGGTCCGGGCCGCCATTGTAGACGAAGAAACAAGGAAGGTGTTCGTCGCCAACGCCCTCAAGCTGCGAGAGGTGGTCGCCGACGAGGAGCTCCATGAGAGGTACATCGACGAGTTCATACACCAGCTTAGGTTAAGCTCTCCTACGTACCTCGCCAGCTCATGAATGAACCCCGTCTTGGGCCCATGGATT GTAATCCCTACAAATAATAATGTCCTTCCTCCGTTTCAGAATATAAGTCATTTTAGTATTTTCCACATATATATTGATGTTAATAAATCTAGATAGATATATATATGTCTAGATTCATTAACATCAATATAAATATGAGAAATATTAAAATGACTTACATTGTGAAACAGAGGGAGTACGTACGTACGTGTGTATGTGTGTCTGTAAGGGATTTTGGATCATGCCATTGCAAATTTATTGT ] [-] EMBL CF302902 [ TCTTGGGCCCATGGATT GTAATCCCTACAAATAATAATGTCCTTCCTCCGTTTCAGAATATAAGTCATTTTAGTATTTTCCACATATATATTGATGTTAATAAATCTAGATAGATATATATATGTCTAGATTCATTAACATCAATATAAATATGAGAAATATTAAAATGACTTACATTGTGAAACAGAGGGAGTACGTACGTACGTGTGTATGTGTGTCTGTCTGTCATTTTGGATCATGCCATTGCAAATTTATTGTATTAAAAAAATACATGCATGTACGTACGTACGTGTGTCTGTCGGTCATTTTGGATCAAAAAAAa ] [+] EMBL CF302903 [ CTTGGGCCCATGGATTAGAAACCCCTACAAATAATAATGTCCTTCCTCCGTTTCAGAATATAAGTCATTTTAGTATTTTCCACATATATATTGATGTTAATAAATCTAGATAGATATATATATGTCTAGATTCATTAACATCAATATAATTATTATAAATATTAAAATGACTTACATTGTGAAACAGAGGGAGTAC TACGTACGTGTGTATGTGTGTCTGTCTGTCATTTTGGATCATGCCATTGCAAATTTATTGTATTAAAAAAATACATGCATGTACGTACGTACGTGTGTCTGTCGGTCATTTTGGATCAAAAAAA ] consensusID : consensus_14128#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 642 fasta sequence [ATACTGGAGCACGCCGCCGTGGGCGCGTTCCTGACGCACTGCGGCCGGAACTCGCTGGTGGAGGGGATCTCCGCCGGGAACCCCCTCGTCATGCTCCCCATCGCCGGCGACCAGGGCCCCAACGCGCGCCTCATGGAGGCGAGGAAGGTGGGGCTGCAGGTGGCGAGGGATGGCGCAGACGGCTCCTTCGACCGCCACGGCGTCGCCGCCGCGGTCCGGGCCGCCATTGTAGACGAAGAAACAAGGAAGGTGTTCGTCGCCAACGCCCTCAAGCTGGGAGAGGTGGTCGCCGACGAGGAGCTCCATGAGAGGTACATTGATGAGTTCATACACCAGCTTAGGTTAAGCTTTCCTACGTACCTCGCCAGCTCATGAATGAACCCCGTCTTGGGCCCATGGATTGTAATCCCTACAAATAATAATGTCCTTCCTCCGTTTCAGAATATAAGTCATTTTAGTATTTTCCACATATATATTGATGTTAATAAATCTAGATAGATATATATATGTCTAGATTCATTAACATCAATATAAATATGAGAAATATTAAAATGACTTACATTGGGAAACAGAGGGAGTACGTACGTACGTGTGTATGTGTGTCTGTCTGTCATTTTGGATCATGCCATTCTTAAGGATGTA] [-] EMBL CB645782 [ATACTGGAGCACGCCGCCGTGGGCGCGTTCCTGACGCACTGCGGCCGGAACTCGCTGGTGGAGGGGATCTCCGCCGGGAACCCCCTCGTCATGCTCCCCATCGCCGGCGACCAGGGCCCCAACGCGCGCCTCATGGAGGCGAGGAAGGTGGGGCTGCAGGTGGCGAGGGATGGCGCAGACGGCTCCTTCGACCGCCACGGCGTCGCCGCCGCGGTCCGGGCCGCCATTGTAGACGAAGAAACAAGGAAGGTGTTCGTCGCCAACGCCCTCAAGCTGGGAGAGGTGGTCGCCGACGAGGAGCTCCATGAGAGGTACATTGATGAGTTCATACACCAGCTTAGGTTAAGCTTTCCTACGTACCTCGCCAGCTCATGAATGAACCCCGTCTTGGGCCCATGGATTGTAATCCCTACAAATAATAATGTCCTTCCTCCGTTTCAGAATATAAGTCATTTTAGTATTTTCCACATATATATTGATGTTAATAAATCTAGATAGATATATATATGTCTAGATTCATTAACATCAATATAAATATGAGAAATATTAAAATGACTTACATTGGGAAACAGAGGGAGTACGTACGTACGTGTGTATGTGTGTCTGTCTGTCATTTTGGATCATGCCATTCTTAAGGATGTA] consensusID : consensus_14128#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 433 fasta sequence [CCGCCGCCGCCGCCATCCTCCCTCCCGGNTTCCAGGAACGCACGGCGAGCCGCGGCGTGGTCACCATGGGCTGGGCGCCGCAGATCGCCATACTGGAGCACGCCGCCGTGGGCGCGTTCCTGACGCACTGCGGCCGGAACTCGCTGGTGGAGGGGATCTCCGCCGGGAACCCCCTCGTCATGCTCCCCATCGCCGGCGACCAGGGCCCCAACGCGCGCCTCATGGAGGCGAGGAAGGTGGGGCTGCAGGTGGCGAGGGATGGCGCAGACGGCTCCTTCGACCGCCACGGCGTCGCCGCCGCGGTCCGGGCCGCCATTGTAGACGAAGAAACAAGGAAGGTGTTCGTCGCCAACGCCCTCAAGATGCGAGAGGTGGTCGCCGACGAGGAGCTCCATCAGCGGTAGTTGGCGCACGTGGCGCCCAGGAAGTGGGT] [-] EMBL CB684060 [CCGCCGCCGCCGCCATCCTCCCTCCCGGNTTCCAGGAACGCACGGCGAGCCGCGGCGTGGTCACCATGGGCTGGGCGCCGCAGATCGCCATACTGGAGCACGCCGCCGTGGGCGCGTTCCTGACGCACTGCGGCCGGAACTCGCTGGTGGAGGGGATCTCCGCCGGGAACCCCCTCGTCATGCTCCCCATCGCCGGCGACCAGGGCCCCAACGCGCGCCTCATGGAGGCGAGGAAGGTGGGGCTGCAGGTGGCGAGGGATGGCGCAGACGGCTCCTTCGACCGCCACGGCGTCGCCGCCGCGGTCCGGGCCGCCATTGTAGACGAAGAAACAAGGAAGGTGTTCGTCGCCAACGCCCTCAAGATGCGAGAGGTGGTCGCCGACGAGGAGCTCCATCAGCGGTAGTTGGCGCACGTGGCGCCCAGGAAGTGGGT] consensusID : consensus_14128#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 273 fasta sequence [ATTGTAGACGAAGAAACAAGGAAGGTGTTNNTCGCCAACGCCTTAAGATGCGAGAGGTGGTCGCCGACNAGGAGCTCCATGAGAGGTACATCGACGAGTTCATACACCAGCTTAGGTTAAGCTCTCCTACGTACCTCGCCAGCTCATGAATGAACCCCCTCTTGGGCCCATGGATTTTAATCCCTACAAATAATAATGTCCTTCCTCCTTTCAGATATAAGTCATTTTAGTTTTTGCCAATATATTGGATGTTATAATTVGGTGGTTTTTTTT] [+] EMBL OS38064 [ATTGTAGACGAAGAAACAAGGAAGGTGTTNNTCGCCAACGCCTTAAGATGCGAGAGGTGGTCGCCGACNAGGAGCTCCATGAGAGGTACATCGACGAGTTCATACACCAGCTTAGGTTAAGCTCTCCTACGTACCTCGCCAGCTCATGAATGAACCCCCTCTTGGGCCCATGGATTTTAATCCCTACAAATAATAATGTCCTTCCTCCTTTCAGATATAAGTCATTTTAGTTTTTGCCAATATATTGGATGTTATAATTVGGTGGTTTTTTTT] consensusID : consensus_14128#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 248 fasta sequence [TAAAAAATGACCTGTTAACACTGTGGTTGAAACCGCGAGGGGACGTTACCGTTACCGTACGTACGTGTGTGTATGTGTGTCTGTCTGTCATTTTGGATCATGCCATTGCAAATTTATTGTATTAAAAAAATACAGGCANGTACGTACGTACGTGTGTCTGTCGGTCATTTTGGATCATCCTTCCAAATTTTACCGTATTAAAAAAATACCACTATTATTTTGATTTCTTGAGGGGAAAAAAAAAAAAA] [+] EMBL BQ906526 [TAAAAAATGACCTGTTAACACTGTGGTTGAAACCGCGAGGGGACGTTACCGTTACCGTACGTACGTGTGTGTATGTGTGTCTGTCTGTCATTTTGGATCATGCCATTGCAAATTTATTGTATTAAAAAAATACAGGCANGTACGTACGTACGTGTGTCTGTCGGTCATTTTGGATCATCCTTCCAAATTTTACCGTATTAAAAAAATACCACTATTATTTTGATTTCTTGAGGGGAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14128#1 ------------------------------------------------------------ consensus_14128#3 ------------------------------------------------------------ consensus_14128#2 ------------------------------------------------------------ consensus_14128#0 AGATGGGTCGCCGCCGCTGCGGGTTGTGATCTTCCCGTGGCTGGCGTTCGGGCACCTGCT 60 consensus_14128#4 ------------------------------------------------------------ consensus_14128#1 ------------------------------------------------------------ consensus_14128#3 ------------------------------------------------------------ consensus_14128#2 ------------------------------------------------------------ consensus_14128#0 CCCGTACATGGAGCTCGCGGAGCGCATGGCGTCGAGGGGCCACCACGTGTCCTTCGTCTC 120 consensus_14128#4 ------------------------------------------------------------ consensus_14128#1 ------------------------------------------------------------ consensus_14128#3 ------------------------------------------------------------ consensus_14128#2 ------------------------------------------------------------ consensus_14128#0 CACGCCGCGGAACATCGCGCGCCTCCCGGCGCCGGTGGCGTCGGCGGTGGAGCTCGTGGC 180 consensus_14128#4 ------------------------------------------------------------ consensus_14128#1 ------------------------------------------------------------ consensus_14128#3 ------------------------------------------------------------ consensus_14128#2 ------------------------------------------------------------ consensus_14128#0 GCTGCCGCTCCCGCGGGTGGACGGCCTCGCCGACGGCGCCGAGTCCACCAACGACGTCCC 240 consensus_14128#4 ------------------------------------------------------------ consensus_14128#1 ------------------------------------------------------------ consensus_14128#3 ------------------------------------------------------------ consensus_14128#2 ------------------------------------------------------------ consensus_14128#0 CGACGACGAGCAGGGGCTCCTCATGGAGGCCTTCGACGGCCTCGCCGCTCCTTTCGCCGA 300 consensus_14128#4 ------------------------------------------------------------ consensus_14128#1 ------------------------------------------------------------ consensus_14128#3 ------------------------------------------------------------ consensus_14128#2 ------------------------------------------------------------ consensus_14128#0 CTTCCTGGCCGCCGCGTGCGCCGACGACGGCGGCGGCGGAAGGAGGAGGAGGCCCGACTG 360 consensus_14128#4 ------------------------------------------------------------ consensus_14128#1 ------------------------------------------------------------ consensus_14128#3 ------------------------------------------------------------ consensus_14128#2 ------------------------------------------------------------ consensus_14128#0 GGTCATCGCCGACTCGTTCCACCACTGGGCCGCCCCCGCCGCCGCCCGGCACGGGGTGCC 420 consensus_14128#4 ------------------------------------------------------------ consensus_14128#1 ------------------------------------------------------------ consensus_14128#3 ------------------------------------------------------------ consensus_14128#2 ------------------------------------------------------------ consensus_14128#0 ATGCGTGGCCCTCCTCCCGAGCGCCGCCGTCATGGCTGCGTGGGTCGTCCCGCCGCCGGC 480 consensus_14128#4 ------------------------------------------------------------ consensus_14128#1 ------------------------------------------------------------ consensus_14128#3 ------------------------------------------------------------ consensus_14128#2 ------------------------------------------------------------ consensus_14128#0 GACGTCGTCGCCGTCACCGGCGGCGGCTATGCCCAGCTACGAGTGGGAGAAGCTCAAGGC 540 consensus_14128#4 ------------------------------------------------------------ consensus_14128#1 ------------------------------------------------------------ consensus_14128#3 ------------------------------------------------------------ consensus_14128#2 ------------------------------------------------------------ consensus_14128#0 AAGCTTCCTCGCCGCCACCAGCCATGGCGCGTCGTCGTCGGCGTCGGGCGGCATGTCGCG 600 consensus_14128#4 ------------------------------------------------------------ consensus_14128#1 ------------------------------------------------------------ consensus_14128#3 ------------------------------------------------------------ consensus_14128#2 ------------------------------------------------------------ consensus_14128#0 GGCGACGCGCTGCTCCCTGACGCTCGAGAGGTGCACGCTGGCGGCCATGCGGAGCTGCGT 660 consensus_14128#4 ------------------------------------------------------------ consensus_14128#1 ------------------------------------------------------------ consensus_14128#3 ------------------------------------------------------------ consensus_14128#2 ------------------------------------------------------------ consensus_14128#0 CGAGTGGGAGCCCGAGCCGTTCCGGGCGGTGGCCGCGGGGCTCGGCAAGCCGCTCGTCCC 720 consensus_14128#4 ------------------------------------------------------------ consensus_14128#1 ------------------------------------------------------------ consensus_14128#3 ------------------------------------------------------------ consensus_14128#2 ------------------------------------------------------------ consensus_14128#0 CCTCGGCCTCCTCCCGCCATCGCCCGCCGGATCCCGCCGCCGCCGCGCCGTCGCCGGAGA 780 consensus_14128#4 ------------------------------------------------------------ consensus_14128#1 ------------------------------------------------------------ consensus_14128#3 ------------------------------------------------------------ consensus_14128#2 ------------------------------------------------------------ consensus_14128#0 AGAAGACGACGACTCCACCAACCCCCTCCTCCGCTGGCTGGACGCCCAGCCGCCCAGCTC 840 consensus_14128#4 ------------------------------------------------------------ consensus_14128#1 ------------------------------------------------------------ consensus_14128#3 ------------------------------------------------------------ consensus_14128#2 ------------------------------------------------------------ consensus_14128#0 GGTGCTGTACGTCGCGCTGGGGAGCGAGGTGCCACTGCGCGTCGACCAGGTGCACGAGCT 900 consensus_14128#4 ------------------------------------------------------------ consensus_14128#1 ------------------------------------------------------------ consensus_14128#3 ------------------------------------------------------------ consensus_14128#2 ------------------------------------------------------------ consensus_14128#0 CGCCCTCGGCCTGGAGCTCGCCGGCGCGCGCTTCCTCTGGGCTCTCAGAAAGCCCCGCTC 960 consensus_14128#4 ------------------------------------------------------------ consensus_14128#1 ------------------------------------------------------------ consensus_14128#3 ------------------------------------------------------------ consensus_14128#2 --------------------------CCGCCGCCGCCGCCATCCTCCCTCCCGGNTTCCA 34 consensus_14128#0 CTCCTCCGCCGCCTCCGCCGCCGCCGCCGCCGCCGCCGCCATCCTCCCTCCCGGCTTCCA 1020 consensus_14128#4 ------------------------------------------------------------ consensus_14128#1 -------------------------------------------------------ATACT 5 consensus_14128#3 ------------------------------------------------------------ consensus_14128#2 GGAACGCACGGCGAGCCGCGGCGTGGTCACCATGGGCTGGGCGCCGCAGATCGCCATACT 94 consensus_14128#0 GGAACGCACGGCGAGCCGCGGCGTGGTCACCATGGGCTGGGCGCCGCAGATCGCCATACT 1080 consensus_14128#4 ------------------------------------------------------------ consensus_14128#1 GGAGCACGCCGCCGTGGGCGCGTTCCTGACGCACTGCGGCCGGAACTCGCTGGTGGAGGG 65 consensus_14128#3 ------------------------------------------------------------ consensus_14128#2 GGAGCACGCCGCCGTGGGCGCGTTCCTGACGCACTGCGGCCGGAACTCGCTGGTGGAGGG 154 consensus_14128#0 GGAGCACGCCGCCGTGGGCGCGTTCCTGACGCACTGCGGCCGGAACTCGCTGGTGGAGGG 1140 consensus_14128#4 ------------------------------------------------------------ consensus_14128#1 GATCTCCGCCGGGAACCCCCTCGTCATGCTCCCCATCGCCGGCGACCAGGGCCCCAACGC 125 consensus_14128#3 ------------------------------------------------------------ consensus_14128#2 GATCTCCGCCGGGAACCCCCTCGTCATGCTCCCCATCGCCGGCGACCAGGGCCCCAACGC 214 consensus_14128#0 GATCTCCGCCGGGAACCCCCTCGTCATGCTCCCCATCGCCGGCGACCAGGGCCCCAACGC 1200 consensus_14128#4 ------------------------------------------------------------ consensus_14128#1 GCGCCTCATGGAGGCGAGGAAGGTGGGGCTGCAGGTGGCGAGGGATGGCGCAGACGGCTC 185 consensus_14128#3 ------------------------------------------------------------ consensus_14128#2 GCGCCTCATGGAGGCGAGGAAGGTGGGGCTGCAGGTGGCGAGGGATGGCGCAGACGGCTC 274 consensus_14128#0 GCGCCTCATGGAGGCGAGGAAGGTGGGGCTGCAGGTGGCGAGGGATGGCGCAGACGGCTC 1260 consensus_14128#4 ------------------------------------------------------------ consensus_14128#1 CTTCGACCGCCACGGCGTCGCCGCCGCGGTCCGGGCCGCCATTGTAGACGAAGAAACAAG 245 consensus_14128#3 ----------------------------------------ATTGTAGACGAAGAAACAAG 20 consensus_14128#2 CTTCGACCGCCACGGCGTCGCCGCCGCGGTCCGGGCCGCCATTGTAGACGAAGAAACAAG 334 consensus_14128#0 CTTCGACCGCCACGGCGTCGCCGCCGCGGTCCGGGCCGCCATTGTAGACGAAGAAACAAG 1320 consensus_14128#4 ---------------------TAAAAAATGACCTGTTAACACTGTGGTTGAAACCGCGAG 39 * *** * *** * ** consensus_14128#1 GAAG-GTGTTCGTCGCCA-ACGCCCTCAAG-CTGGGAGAGGTGGTCGCCGACGAGGAGCT 302 consensus_14128#3 GAAG-GTGTTNNTCGCCA-ACGCC-TTAAG-ATGCGAGAGGTGGTCGCCGACNAGGAGCT 76 consensus_14128#2 GAAG-GTGTTCGTCGCCA-ACGCCCTCAAG-ATGCGAGAGGTGGTCGCCGACGAGGAGCT 391 consensus_14128#0 GAAG-GTGTTCGTCGCCA-ACGCCCTCAAG-CTGCGAGAGGTGGTCGCCGACGAGGAGCT 1377 consensus_14128#4 GGGACGTTACCGTTACCGTACGTACGTGTGTGTATGTGTGTCTGTCTGTCATTTTGGATC 99 * ** * ** *** * * * * * *** * * consensus_14128#1 CCATGAGAGGTACATTGATGAGTTCATACACCAGCTTAGGTTAAGCTTTCCTACGTACCT 362 consensus_14128#3 CCATGAGAGGTACATCGACGAGTTCATACACCAGCTTAGGTTAAGCTCTCCTACGTACCT 136 consensus_14128#2 CCATCAGCGGTA-GTTGGCG----CACGTGGCGCCCAGGAAGTGGGT------------- 433 consensus_14128#0 CCATGAGAGGTACATCGACGAGTTCATACACCAGCTTAGGTTAAGCTCTCCTACGTACCT 1437 consensus_14128#4 ATGCCATTGCAAATTTATTGTATTAAAAAAATA--CAGGCANGTACGTACGTACGTGTGT 157 * * * * * * * consensus_14128#1 CGCCAGCTCATGAATGAAC-CCCGTCTTGGGCCCATGGATTGTAATCCCTACAAATAATA 421 consensus_14128#3 CGCCAGCTCATGAATGAAC-CCCCTCTTGGGCCCATGGATTTTAATCCCTACAAATAATA 195 consensus_14128#2 ------------------------------------------------------------ consensus_14128#0 CGCCAGCTCATGAATGAAC-CCCGTCTTGGGCCCATGGATTGTAATCCCTACAAATAATA 1496 consensus_14128#4 CTGTCGGTCATTTTGGATCATCCTTCCAAATTTTACCGTATTAAAAAAATACCACTATTA 217 consensus_14128#1 ATGTCCTTCCTCCGTTTCAGAATATAAGTCATTTTAGTATTTTCCACATATATATTGATG 481 consensus_14128#3 ATGTCCTTCCTCC-TTTCAGA-TATAAGTCATTTTAGTTTTTGCCA-ATATAT-TGGATG 251 consensus_14128#2 ------------------------------------------------------------ consensus_14128#0 ATGTCCTTCCTCCGTTTCAGAATATAAGTCATTTTAGTATTTTCCACATATATATTGATG 1556 consensus_14128#4 TTTTGATTTCTTGAGGGGAAAAAAAAAAAAA----------------------------- 248 consensus_14128#1 TTAATAAATCTAGATAGATATATATATGTCTAGATTCATTAACATCAATATAAATATGAG 541 consensus_14128#3 TTA-TAA--TTVGGTGGTTTTTTTT----------------------------------- 273 consensus_14128#2 ------------------------------------------------------------ consensus_14128#0 TTAATAAATCTAGATAGATATATATATGTCTAGATTCATTAACATCAATATAAATATGAG 1616 consensus_14128#4 ------------------------------------------------------------ consensus_14128#1 AAATATTAAAATGACTTACATTGGGAAACAGAGGGAGTACGTACGTACGTGTGTATGTGT 601 consensus_14128#3 ------------------------------------------------------------ consensus_14128#2 ------------------------------------------------------------ consensus_14128#0 AAATATTAAAATGACTTACATTGTGAAACAGAGGGAGTACGTACGTACGTGTGTATGTGT 1676 consensus_14128#4 ------------------------------------------------------------ consensus_14128#1 GTCTGTCTGTCATTTTGGATCATGCCATTCTTAAGGATGTA------------------- 642 consensus_14128#3 ------------------------------------------------------------ consensus_14128#2 ------------------------------------------------------------ consensus_14128#0 GTCTGTCTGTCATTTTGGATCATGCCATTGCAAATTTATTGTATTAAAAAAATACATGCA 1736 consensus_14128#4 ------------------------------------------------------------ consensus_14128#1 ------------------------------------------------------------ consensus_14128#3 ------------------------------------------------------------ consensus_14128#2 ------------------------------------------------------------ consensus_14128#0 TGTACGTACGTACGTGTGTCTGTCGGTCATTTTGGATCAAAAAAATGCAAATTTTACTGT 1796 consensus_14128#4 ------------------------------------------------------------ consensus_14128#1 -------------------- consensus_14128#3 -------------------- consensus_14128#2 -------------------- consensus_14128#0 ATTAAAAAAATACCACTATT 1816 consensus_14128#4 -------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||