cluster # 1413

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Oryza sativa
cluster # 1413 cluster # 1413 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1413#0 length = 492 sequences # 1

consensus_1413#1 length = 352 sequences # 1

consensusID : consensus_1413#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 492
fasta sequence

                              [GAGAGCCCCGAGGCGGTGGCGGCGGAGCTGAAGGAGGTGCTGCGGGCGCGGAAGGAGGCGGAGGCCGCGGCCGGCGGCGGCGGGTGGTGGGCCGGCGCCGCGCAGGAGATGTCGGAGATCGAGTGGCCGGCGCCCGGGAAGGTGGTGGGCACCACCGGCGTGGTGCTCGGCGTCATCGCGGGCTCCACCGCCGCGCTGCTCTCCGTCAACGCGCTCCTCGCCGAGCTCTCCGACCGCGTCTTCGCCGGCCGGGGACTCCAGGATTTCTTCTGATGAAGGTTGAGCTGAGAGTCTGAGATAGGCGGAAGGCCTACCTTTCAATGCTGAAGCTAATGGTGAAGACGACAAGAATTAAATCGAGCAGTTCCAATTGGATGAAGCCGGCAAGCATCCATTTGTTCTGTTTGCCAATCTATCGAGGTGCTATGCTGATGTGATGTTGTGCACTTGTGCTGTCCGTATTTATAAGAATATAAGGTTAAACTCCACCTC]

[+] EMBL CF326363             [GAGAGCCCCGAGGCGGTGGCGGCGGAGCTGAAGGAGGTGCTGCGGGCGCGGAAGGAGGCGGAGGCCGCGGCCGGCGGCGGCGGGTGGTGGGCCGGCGCCGCGCAGGAGATGTCGGAGATCGAGTGGCCGGCGCCCGGGAAGGTGGTGGGCACCACCGGCGTGGTGCTCGGCGTCATCGCGGGCTCCACCGCCGCGCTGCTCTCCGTCAACGCGCTCCTCGCCGAGCTCTCCGACCGCGTCTTCGCCGGCCGGGGACTCCAGGATTTCTTCTGATGAAGGTTGAGCTGAGAGTCTGAGATAGGCGGAAGGCCTACCTTTCAATGCTGAAGCTAATGGTGAAGACGACAAGAATTAAATCGAGCAGTTCCAATTGGATGAAGCCGGCAAGCATCCATTTGTTCTGTTTGCCAATCTATCGAGGTGCTATGCTGATGTGATGTTGTGCACTTGTGCTGTCCGTATTTATAAGAATATAAGGTTAAACTCCACCTC]




>consensus_1413#0
GAGAGCCCCGAGGCGGTGGCGGCGGAGCTGAAGGAGGTGCTGCGGGCGCGGAAGGAGGCG
GAGGCCGCGGCCGGCGGCGGCGGGTGGTGGGCCGGCGCCGCGCAGGAGATGTCGGAGATC
GAGTGGCCGGCGCCCGGGAAGGTGGTGGGCACCACCGGCGTGGTGCTCGGCGTCATCGCG
GGCTCCACCGCCGCGCTGCTCTCCGTCAACGCGCTCCTCGCCGAGCTCTCCGACCGCGTC
TTCGCCGGCCGGGGACTCCAGGATTTCTTCTGATGAAGGTTGAGCTGAGAGTCTGAGATA
GGCGGAAGGCCTACCTTTCAATGCTGAAGCTAATGGTGAAGACGACAAGAATTAAATCGA
GCAGTTCCAATTGGATGAAGCCGGCAAGCATCCATTTGTTCTGTTTGCCAATCTATCGAG
GTGCTATGCTGATGTGATGTTGTGCACTTGTGCTGTCCGTATTTATAAGAATATAAGGTT
AAACTCCACCTC

consensusID : consensus_1413#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 352
fasta sequence

                              [GCGGCTCCAAGTCCAAGGGCGCAAGAGCGGAGGAGAACAAGAAGGGGCAAGAGCAGGAGCAGCAGGAGGCGTCCATGACGGTGGTGGACGGCGCAGAGGAGGCCGGGAAGGAGGAGGAGGGGAGAAGAGCCCCGAGACGGTGGCGGCGGAGCTGAAGGAGGCCGAGACCGCGGCCATCAGCAGCGGGTGGTGGGTCGGCGTCGCGCAGGAGATGTCGAAGATCGAGTGGCCGGTGCCCGGGAAGGTGGTGGGCACCACAGGCGTCGTGCTCGGTGTCATCGCGGGCTCCACCGCCGCGCTGCTCTCCGTCAACGCGCTCCTCGCCGAGCTCTCCGACCGCACCGCCGCTCGA]

[+] EMBL AU075823             [GCGGCTCCAAGTCCAAGGGCGCAAGAGCGGAGGAGAACAAGAAGGGGCAAGAGCAGGAGCAGCAGGAGGCGTCCATGACGGTGGTGGACGGCGCAGAGGAGGCCGGGAAGGAGGAGGAGGGGAGAAGAGCCCCGAGACGGTGGCGGCGGAGCTGAAGGAGGCCGAGACCGCGGCCATCAGCAGCGGGTGGTGGGTCGGCGTCGCGCAGGAGATGTCGAAGATCGAGTGGCCGGTGCCCGGGAAGGTGGTGGGCACCACAGGCGTCGTGCTCGGTGTCATCGCGGGCTCCACCGCCGCGCTGCTCTCCGTCAACGCGCTCCTCGCCGAGCTCTCCGACCGCACCGCCGCTCGA]




>consensus_1413#1
GCGGCTCCAAGTCCAAGGGCGCAAGAGCGGAGGAGAACAAGAAGGGGCAAGAGCAGGAGC
AGCAGGAGGCGTCCATGACGGTGGTGGACGGCGCAGAGGAGGCCGGGAAGGAGGAGGAGG
GGAGAAGAGCCCCGAGACGGTGGCGGCGGAGCTGAAGGAGGCCGAGACCGCGGCCATCAG
CAGCGGGTGGTGGGTCGGCGTCGCGCAGGAGATGTCGAAGATCGAGTGGCCGGTGCCCGG
GAAGGTGGTGGGCACCACAGGCGTCGTGCTCGGTGTCATCGCGGGCTCCACCGCCGCGCT
GCTCTCCGTCAACGCGCTCCTCGCCGAGCTCTCCGACCGCACCGCCGCTCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1413#0      ------------------------------------------------------------
consensus_1413#1      GCGGCTCCAAGTCCAAGGGCGCAAGAGCGGAGGAGAACAAGAAGGGGCAAGAGCAGGAGC 60
                                                                                  

consensus_1413#0      -----------------------------------GAGAGCCCCGAGGCGGTGGCGGCGG 25
consensus_1413#1      AGCAGGAGGCGTCCATGACGGTGGTGGACGGCGCAGAGGAGGCCGGGAAGGAGGAGGAGG 120
                                                         ***    *** *  ** ** ** **

consensus_1413#0      AG--------CTGAAGGAGGTGCTGCGGGCGCGGAAGGAGGCGGAGGCCGCGGCCGGCGG 77
consensus_1413#1      GGAGAAGAGCCCCGAGACGGTGGCGGCGGAGCTGAAGGAGGCCGAGACCGCGGCCATCAG 180
                       *        *   **  ****  *  ** ** ********* *** ********  * *

consensus_1413#0      CGGCGGGTGGTGGGCCGGCGCCGCGCAGGAGATGTCGGAGATCGAGTGGCCGGCGCCCGG 137
consensus_1413#1      CAGCGGGTGGTGGGTCGGCGTCGCGCAGGAGATGTCGAAGATCGAGTGGCCGGTGCCCGG 240
                      * ************ ***** **************** *************** ******

consensus_1413#0      GAAGGTGGTGGGCACCACCGGCGTGGTGCTCGGCGTCATCGCGGGCTCCACCGCCGCGCT 197
consensus_1413#1      GAAGGTGGTGGGCACCACAGGCGTCGTGCTCGGTGTCATCGCGGGCTCCACCGCCGCGCT 300
                      ****************** ***** ******** **************************

consensus_1413#0      GCTCTCCGTCAACGCGCTCCTCGCCGAGCTCTCCGACCGCGTCTTCGCCGGCCGGGGACT 257
consensus_1413#1      GCTCTCCGTCAACGCGCTCCTCGCCGAGCTCTCCGACCGCACCGCCGCTCGA-------- 352
                      ****************************************  *  ***  *         

consensus_1413#0      CCAGGATTTCTTCTGATGAAGGTTGAGCTGAGAGTCTGAGATAGGCGGAAGGCCTACCTT 317
consensus_1413#1      ------------------------------------------------------------
                                                                                  

consensus_1413#0      TCAATGCTGAAGCTAATGGTGAAGACGACAAGAATTAAATCGAGCAGTTCCAATTGGATG 377
consensus_1413#1      ------------------------------------------------------------
                                                                                  

consensus_1413#0      AAGCCGGCAAGCATCCATTTGTTCTGTTTGCCAATCTATCGAGGTGCTATGCTGATGTGA 437
consensus_1413#1      ------------------------------------------------------------
                                                                                  

consensus_1413#0      TGTTGTGCACTTGTGCTGTCCGTATTTATAAGAATATAAGGTTAAACTCCACCTC 492
consensus_1413#1      -------------------------------------------------------