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Oryza sativa
cluster # 14134 cluster # 14134       Sequences # 15       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14134#0 length = 560 sequences # 14  
consensus_14134#1 length = 333 sequences # 1  

consensusID : consensus_14134#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 14
consensus length = 560
fasta sequence
                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGGGATACCA-TCCA-TTTTTTTTATTGGCGACGAATTTATCAAATATGCTCTAAATACATATCTTGGGGGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCGGAAAGGGAGGGAAAAAATTATTACATATGTGTTAAAAGCAAAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAATTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAACTAATCAACTGCACCTGCCTG-ACGTTGTCAAAGCCGATGATACGGACAAAGGCATCGGGGTAGGCCTTTTTGGCCTCCTCGAGCTCCTT]

[-] EMBL CF309077             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGTGATACCA TCCA TTTTTTTTATTGTCGACGAATTTATCAGATATGCTCTAGATACATATCTTGTGTGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGTAGTACTCTGACAATAAAACCGGCCGGAGAGG                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CF276114             [                                                        TTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGGGATACCA TCCA TTTTTTTTATTGGCGACGAATTTACCAAATATGCTCTAAATACATATCTTGGGTGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCGGAGAGGGAGGGAAAAAATTATTACATATGTGTTAAAAGCAAAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAGTTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAGCTAATCAACTGCACCTGCCTG ACGTTGTCAAACCCGATGATA                                               ]
[+] EMBL CF305510             [                                                          TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGGGAAACCA TCCA TTTTTTTTATTGGCGACAAATTTATCAAATATGCTCTAAATACATATCTTGGGGGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCGGAAAGGGAGGGAAAAAATTATTACATTTGTGTTAAAAGCAAAGGCCATTGAAATGGTACATAACCAAACTGGAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAATTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAACTAATCAACTGCACCTGCCTG ACGTTGTCAAAACCGATGATACGGACAAAGGCATCGGGGTAGGCCTTTTTGGCCTCCTC         ]
[+] EMBL CF302137             [                                                             TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGGGATACCA TCCA TTTTTTTTATTGGCGACAAATTTATCAAATATGCTCTAAATACATATCTTGGGGGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGTTTTTCTTTTACAATAAAACCGGCCGGAAAGGGAGGGAAAAAATTTTTACTTTTGTGTTAAAAGCAAAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAATTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAACTAATCAACTGCACCTGCCTG ACGTTGTCAAAGCCGATGAT                                                ]
[+] EMBL CF337692             [                                                             TTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTACGGGATACCA TCCA TTTTTTTTATTGGCGACAAATTTATCAAATATGCTCTAAATACATATCTTGGGGGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCGGAAAGGGAGGGAAAAAATTATTACATATGTGTTAAAAGCAAAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAATTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAGCTAATCAACTGCACCTGCCTGAACGTTGTCAAAGCCGATGA                                                 ]
[+] EMBL CF302610             [                                                             TTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTACGGGATACCA TCCA TTTTTTTTATTGTCGACGAATTTATCAAATATGCTCTAAATACATATCTTGGGTGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGTTTTTCTCTTACAATAAAACCGGCCGGAAAGGGAGGGAAAAAATTTTTTCTTATGTGTTAAAAGCAAAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAATTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAACTAATCAACTGCACCTGCC                                                                       ]
[+] EMBL CF302552             [                                                             TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGGGAAACCA TCCATTTTTTTTTATTGGCGACAAATTTATCAAATATGCTCTAAATACATATTTTGGGGGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGGAGTACTTTTACAATAAAACCGGCCGGAGAGGGAGGGAAAAAATTATTACATTTGTGTTAAAAGCAAAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATTTAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAGTTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAACTAATCAACTGCACCTGCCTG ACGTTGTCAAAGC                                                       ]
[+] EMBL CF305404             [                                                              TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGGGATACCA TCCA  TTTTTTTATTGGCGACGAATTTATCAAATATGCTCTAAATACATATCTTGGGGGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGTTTTACTCTTACAATAAAACCGGCCGGAGAGGGAGGGAAAAAATTATTACATATGTGTTAAAAGCAGAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAGTTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAGCTAATCAACTGCACCTGCCTG ACGTTGTCGAAGCCGATGATACGGACAAAGGCATCGGGGTAGGCCTTCTTGGCCTCCTCGAGCTCCTT]
[+] EMBL CF298450             [                                                              TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGGGATACCA TCCA TTTTTTTTATTGGCGACAAATTTATCAAATATGCTCTAAATACATATCTTGGGGGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCGGAAAGGGAGGGAAAAAATTATTACATTTGTGTTAAAAGCAAAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAATTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAACTAATCAACTGCACCTGCCTG ACGTTGTCAAACCCGATGAT                                                ]
[+] EMBL CF298528             [                                                               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT    GATACCA TCCA TTTTTTTTATTGGCGACGAATTTATCAAATATGCTCTAAATACATATCTTGGGGGTATATAACCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGGAGTACTCTTACAATAAAACCGGCCGGAAAGGGAGGGAAAAAATTATTACATATGTGTTAAAAACAAAGGCCATTGAAATGGGACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGAAGCTTGATCTTAACTTAATTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGAAGAAACTAATCAACTG                                                                               ]
[+] EMBL CF300312             [                                                                  TTTTTTTTTTGTTTTTTTTTTTTTTTTACGGGATACCA TCCA TTTTTTTTATTGGCGACGAATTTATCAAATATGCTCTAAATACATATCTTGGGGGTATATAGCCGGAGCATTGTTTTCACATATCCTCACCCAACGATAATTGTAGTACTTTTACAATAAAACCGGCCGGAGAGGGAGGGAAAAAATTATTACATATGTGTTAAAAACAAAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGC                                                                                                                                                                                                           ]
[+] EMBL CF302026             [                                                                     TTTTTTTTTTTTTTTTTTTTTTTTACGGGATACCACTCCA TTTTTTTTATTGGCGACAAATTTATCAAATATGCTCTAAATACATATCTTGGGGGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCGGAGAGGGA                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CF308579             [                                                                        TTTTTTTTTTTTTTTTTTTTT    GATACCA TCCA TTTTTTTTATTGGCGACGAATTTATCAAATATGCTCTAAATACATATCTTGGGTGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGGAGTACTCTTACAATAAAACCGGCCGGAAAGGGAGGGAAAAAATTATTACATATGTGTTAAAAACAGAGGCCATTGAGATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAACTTAATTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAACTAATCAACTGCACCTGCCTG ACGTTGTCGAAGCCGATGA                                                 ]
[+] EMBL CF280621             [                                                                                       TTTTTT    GAGACCA TCCA TTTTTTTTATTGGCGACGAATTTATCAAATATGCTCTAAATACATATCTTGGGGGTATATAACCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAGTTGGAGTACTCTTACAATAAAACCGGCCGGAAAGGGAGGGAAAAAATTATTACATATGTGTTAAAAACAAAGGCCATTGAAATGGGACATAACCAAACTGGAAAATAAAAATATATAGCCTACTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGGATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAACTT                                                                                                                                         ]


>consensus_14134#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGGGATACCATCCATTTTTTTTATTG GCGACGAATTTATCAAATATGCTCTAAATACATATCTTGGGGGTATATAGCCGGAGCTTT GTTTTCACATATCCTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCGGAA AGGGAGGGAAAAAATTATTACATATGTGTTAAAAGCAAAGGCCATTGAAATGGTACATAA CCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCC AAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTA GCTTAATTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAACTAATCAAC TGCACCTGCCTGACGTTGTCAAAGCCGATGATACGGACAAAGGCATCGGGGTAGGCCTTT TTGGCCTCCTCGAGCTCCTT



consensusID : consensus_14134#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 333
fasta sequence
                              [TTTTTTTTTTTTTTTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCGGAGAGGGAGGGAAAAAATTATTACTTTTGTGTTAAAAGCAAAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGTCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAGTTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCAATAAACCTAATCAACTGCACCTGCCTGACGTTGTCAAACCCGATGATA]

[+] EMBL CF301595             [TTTTTTTTTTTTTTTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCGGAGAGGGAGGGAAAAAATTATTACTTTTGTGTTAAAAGCAAAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGTCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAGTTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCAATAAACCTAATCAACTGCACCTGCCTGACGTTGTCAAACCCGATGATA]


>consensus_14134#1 TTTTTTTTTTTTTTTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCGGAG AGGGAGGGAAAAAATTATTACTTTTGTGTTAAAAGCAAAGGCCATTGAAATGGTACATAA CCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGTCC AAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTA GCTTAGTTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCAATAAACCTAATCAAC TGCACCTGCCTGACGTTGTCAAACCCGATGATA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14134#0      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60
consensus_14134#1      ------------------------------------------------------------
                                                                                   

consensus_14134#0      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGGGATACCATCCATTTTTTTTATTG 120
consensus_14134#1      ------------------------------------------------------------
                                                                                   

consensus_14134#0      GCGACGAATTTATCAAATATGCTCTAAATACATATCTTGGGGGTATATAGCCGGAGCTTT 180
consensus_14134#1      ------------------------------------------------------------
                                                                                   

consensus_14134#0      GTTTTCACATATCCTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCGGAA 240
consensus_14134#1      TTTTTTTTTTTTTTTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCGGAG 60
                        ****    * *  ********************************************* 

consensus_14134#0      AGGGAGGGAAAAAATTATTACATATGTGTTAAAAGCAAAGGCCATTGAAATGGTACATAA 300
consensus_14134#1      AGGGAGGGAAAAAATTATTACTTTTGTGTTAAAAGCAAAGGCCATTGAAATGGTACATAA 120
                       ********************* * ************************************

consensus_14134#0      CCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCC 360
consensus_14134#1      CCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGTCC 180
                       ********************************************************* **

consensus_14134#0      AAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTA 420
consensus_14134#1      AAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTA 240
                       ************************************************************

consensus_14134#0      GCTTAATTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAACTAATCAAC 480
consensus_14134#1      GCTTAGTTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCAATAAACCTAATCAAC 300
                       ***** ************************************** ** ** *********

consensus_14134#0      TGCACCTGCCTGACGTTGTCAAAGCCGATGATACGGACAAAGGCATCGGGGTAGGCCTTT 540
consensus_14134#1      TGCACCTGCCTGACGTTGTCAAACCCGATGATA--------------------------- 333
                       *********************** *********                           

consensus_14134#0      TTGGCCTCCTCGAGCTCCTT 560
consensus_14134#1      --------------------
                                           




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)