These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14138#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 1189 fasta sequence [CAAAAACAAAGCTTCGAAACGCAAAAGTCGCCTCTTTCCTTCTCCGTTCAAAGCAAGCCCACCTCGTTCCTCCTCCTTTACACCTTCCTCTTTTCC-TCATCTGCACGCGTTCGTCCAAACTCCGAAACAAGAAAGCTCAAACTCGATTTCGAAATTTTCGAAGCCCCAATTCTCTCCTCCCACACGCGGAATCGATCAGCGCAGCGCAGGGTAGGCTAGGCGTCGGCGTGCTGTGATGGCGCCGGTGGTGTCGGCGCTGGCCAAGTACAAGCTGGTGTTCCTCGGCGACCAGGCGGTGGGGAAGACGGCCATCATCACCCGCTTCATGTACGACAAGTTCGACGCCACCTACCAGGCGACGATCGGGATCGATTTCCTCTCCAAGACGATGTACCTCGAAGACCGAACCGTACGGCTGCAGCTTTGGGATACAGCTGGGCAGGAGAGGTTCCGGAGCTTGATCCCAAGTTACATCAGGGATTCTTCTGTGGCAGTGATTGTTTACGATGTGACTGACAGGCA-GTCCTTTTTGAGTATATCGAAGTGGATTGAAGAGGTAAATACACA-ACGAGGCGGAGATGTGATCATCGTCCTTGTTGGAAATAAAACAGACCTTGTTGACAAGAGGCAAATATCCACTGACGAAGGAGAAGCCAAGGCACAGGAGCACGGCGCCATGTTCATGGAAACCAGCGCAAAAGCTGGATTCAACATCAAGCCACTGTTTCGCAAGATCGCTGCATCGCTGCCTGGAATGGAGGCGCTCTCATCGGCAAAGCAGGAAGACATGGTGGACATAAACCTACGGCCTGCTGCCTCCGGGCAAATACCTTCAGGGGCAGAAGCACA-AGAAGAACAGAAAGCAGG-CGGTTGTTCCTGCTGAGAGTTTTGTATTCAGGGAAATCGAGGTCGCTTCAGAGTTCAGACTTCAAATTAGTACACACAGTGAATTTCAGGTAGCTTGGATTGTCAGTGCCGATTCGAGTATAGAGAATATTTATGTGTAATTTTTAACAGCGGCATCTAGGTTTGAAACAGACAAAAATTCCCTGAAAATTCTATGTTTTAAAAAGCATAAAAAAAAAAAAAAAAAAACCCTGTCATGCCGTTACGTAGGGTATCGTTGCCAGCAAAAAAAAAAAAAAAAAACCCTGTCATGCCGTTACGTAGGGTATCGTTGACAGCAAGA] [+] EMBL CF313611 [CAAAAACAAAGCTTCGAAACGCAAAAGTCGCCTCTTTCCTTCTCCGTTCAAAGCAAGCCCACCTCGTTCCTCCTCCTTTACACCTTCCTCTTTTCCATCATCTGCACGCGTTCGTCCAAACTCCGAAACAAGAAAGCTCAAACTCGATTT TTATTTTTCGAAGCCCCAATTCTCTCCTCCC ] [+] EMBL CF316949 [ CTCTTTTCCATCATCTGCACGCGTTCGTCCAAACTCCGAAACAAGAAAGCTCAAACTCGATTTCGAAATTTTCGAAGCCCCAATTCTCTCCTCCCACACGCGGAATCGATCAGCGCAGCGCAGGGTAGGCTAGGCGTCGGCGTGCTGTGATGGCGCCGGTGGTGTCGGCGCTGGCCAAGTACAAGCTGGTGTTCCTCGGCGACCAGGCGGTGGGGAAGACGGCCATCATCACCCGCTTCATGTACGACAAGTTCGACGCCACCTACCAGGCGACGATCGGGATCGATTTCCTCTCCAAGACGATGTACCTCGAAGACCGAACCGTACGGCTGCAGCTTTGGGATACAGCTGGGCAGGAGAGGTTCCGGAGCTTGATCCCAAGTTACATCAGGGATTCTTCTGTGGCAGTGATTGTTTACGATGTGACTGACAGGCA GTCCTTTTTGAGT TATCGAAGTGGATTGAAGAGGTAAATACACA ACGAGGCGGAGATGT ] [+] EMBL CF320947 [ CTCTTTTCC TCATCTGCACGCGTCCGT CAAACTCCGAAACAAGAAAGCTCAAACTCGATTGCGAAATTTTCGAAGCCCCAATTCTCTCCTCCCACACGCGGAATCGATCAGCGCAGCGCAGGGTAGGCTAGGCGTCGGCGTGCTGTGATGGCGCCGGTGGTGTCGGCGCTGGCCAAGTACAAGCTGGTGTTCCTCGGCGACCATGCGGTGGGGAAGACGGCCATCATCACCCGCTTCATGTACGACAAGCTCGACGCCACCTACCATGCGACGATCGGGATCGATTTCCTCTCCAAGACGATGTACCTCGAAGACCGAACCGTACGGCTGCAGCTTTGGGATACAGCTGGGCAGGAGAGGTTCCGGAGCTTGATCCCAAGTTACATCAGGGACTCTTCTGTGGCAGTGATTGTTTACGA ] [+] EMBL CF312974 [ TCTTTTCC TCATCTGCACGCGTTCGTCCAAACTCCGAAACAAGAAAGCTCAAACTCGATTTCGAAATTTTCGAAGCCCCAATTCTCTCCTCCCACACGCGGAATCGATCAGCGCAGCGCAGGGTAGGCTAGGCGTCGGCGTGCTGTGATGGCGCCGGTGGTGTCGGCGCTGGCCAAGTACAAGCTGGTGTTCCTCGGCGACCAGGCGGTGGGGAAGACGGCCATCATCACCCGCTTCATGTACGACAAGTTCGACGCCACCTACCAGGCGACGATCGGGATCGATTTCCTCTCCAAGACGATGTACCTCGAAGACCGAACCGTACGGCTGCAGCTTTGGGATACAGCTGGGCAGGAGAGGTTCCGGAGCTTGATCCCAAGTTACATCAGGGATTCTTCTGTGGCAGTGATTGTTTACGATGTGACTGACAGGCA GTCCTTTTTGAGTATATCGAAGTGGATTGAAGAGGTAAATACACA ACGAGGCGGAGATGTGATCATCGTCCTTGTTGGAAATAAAACAGACCTTGTTGACAAGAGGCAAATATCCACTGACGAAGGAGAAGCCAAGGCACAGGAGCACGGCGCCATG ] [+] EMBL CF310747 [ CTCAAACTCGATTTCGAAATTTTCGAAGCCCCAATTCTCTCCTCCCACACGCGGAATCGATCAGCGCAGCGCAGGGTAGGCTAGGCGTCGGCGTGCTGTGATGGCGCCGGTGGTGTCGGCGCTGGCCAAGTACAAGCTGGTGTTCCTCGGCGACCAGGCGGTGGGGAAGACGGCCATCATCACCCGCTTCATGTACGACAAGTTCGACGCCACCTACCAGGCGACGATCGGGATCGATTTCCTCTCCAAGACGATGTACCTCGAAGACCGAACCGTACGGCTGCAGCTTTGGGATACAGCTGGGCAGGAGAGGTTCCGGAGCTTGATCCCAAGTTACATCAGGGATTCTTCTGTGGCAGTGATTGTTTACGATGTGACTGACAGGCA GTCCTTTTTGAGTATATCGAAGTGGATTGAAGAGGTAAATACACA ACGAGGCGGAGATGTGATCATCGTCCTTGTTGGAAATAAAACAGACCTTGTTGACAAGAGGCAAATATCCACTGACGAAGGAGAAGCCAAGGCACAGGAGCACGGCGCCATGTTCATGGAAACCAGCGCAAAAGCTGGATTCAACATCAAGCCACTGTTTCGCAAGATCGCTGCATCGC ] [+] EMBL BI812071 [ GATTGTTTACGATGTGACTGACA GCACGTCCTTTTTGAGTATATCGAAGTGGATTGAAGAGGTAAATACACACACGA GCGGAGATGTGATCATCGTCCTTGTTGGAAATAAAACAGACCTTGTTGACAAGAGGCAAATATCCACTGACGAAGGAGAAGCCAAGGCACAGGAGCACGGCGCCATGTTCATGGAAACCAGCGCAAAAGCTGGATTCAACATCAAGCCACTGTTTCGCAAGATCGCTGCATCGCTGCCTGGAATGGAGGCGCTCTCATCGGCAAAGCAGGAAGACATGGTGGACATAAACCTACGGCCTGCTGCCTCCGGGCAAATACCTTCAGGGGCAGAAGCACACAGAAGAACAGAAAGCAGG CGGTTGTTCCTGCTGAGAGTTTTGTATTCAGGGAAATCGAGGTCGCTTCAGAGTTCAGACTTCAAATTAGTACACACAGTGAATTTCAGGTAGCTTGGATTGTCAGTGCCGATTCGAGTATAGAGAATATTTATGTGTAATTTTTAACAGCGGCATCTAGGTTTGAAACAGACAAAAATTCCCTGAAGTTTCTATGTTTTAAAAA ] [-] EMBL CF310748 [ TTGTTTACGATGTGACTGACAGGCA GTCCTTTTTGAGTATATCGAAGTGGATTGAAGAGGTAAATACACA ACGAGGCGGAGATGTGATCATCGTCC TGTTGGAAATAAAACAGACCTTGTTGACAAGAGGCAAATATCCACTGACGAAGGAGAAGCCAAGGCACAGGAGCACGGCGCCATGTTCATGGAAACCAGCGCAAAAGCTGGATTCAACATCAAGCCACTGTTTCGCAAGATCGCTGCATCGCTGCCTGGAATGGAGGCGCTCTCATCGGCAAAGCAGGAAGACATGGTGGACATAAACCTACGGCCTGCTGCCTCCGGGCAAATACCTTCAGGGGCAGAAGCACA AGAAGAACAGAAAGCAGG CGGTTGTTCCTGCTGAGAGTTTTGTATTCAGGGAAATCGAGGTCGCTTCAGAGTTCAGACTTCAAATTAGTACACACAGTGAATTTCAGGTAGCTTGGATTGTCAGTGCCGATTCGAGTATAGAGAATATTTATGTGTAATTTTTAACAGCGGCATCTAGGTTTGAAACAGACAAAAATTCCCTGAAAAaa ] [-] EMBL CF312973 [ GTATATCGAAGTGGATTGAAGAGGTAAATACACA ACGAGGCGGAGATGTGATCATCGTCCTTG TGGAAATAAAACAGACCTTGTTGACAAGAGGCAAATATCCACTGACGAAGGAGAAGCCAAGGCACAGGAGCACGGCGCCATGTTCATGGAAACCAGCGCAAAAGCTGGATTCAACATCAAGCCACTGTTTCGCAAGATCGCTGCATCGCTGCCTGGAATGGAGGCGCTCTCATCGGCAAAGCAGGAAGACATGGTGGACATAAACCTACGGCCTGCTGCCTCCGGGCAAATACCTTCAGGGGCATAAGCACA AGAAGAACAGAAAGCAGG CGGTTGTTCCTGCTGAGAGTTTTGTATTCAGGGAAATCGAGGTCGCTTCAGAGTTCAGACTTCAAATTAGTACACACAGTGAATTTCAGGTAGCTTGGATTGTCAGTGCCGATTCGAGTATAGAGAATATTTATGTGTAATTTTTAAaaaaa ] [-] EMBL CA305841 [ TGTTGGAAATAAAACANTCCTTGTTNACAAGAGGCTAATATCCNCTCACGAAGCAGAAGCCAAGGCACAGCAGCTCGGCGCCTTGTTCATGNAAACCAGCGCAAAAGCTGGATTCAACATCAAGCCACTGTTTCGCAAGATCGCTGCATCGCTGCCTGGAATGGAGGCGCTCTCATCGGCAAAGCAGGAAGACATGGTGGACATAAACCTACGGCCTGCTGCCTCCGGGCAAATACCTTCAGGGGCAGAAGCACA AGAAGAACAGAAAGCAGG CGGTTGTTCCTGCTGAGAGTTTTGTATTCAGGGAAATCGAGGTCGCTTCAGAGTTCAG ] [+] EMBL CF332148 [ GGCACAGGAGCACGGCGCCATGTTCATGGAAACCAGCGCAAAAGCTGGATTCAACATCAAGCCACTGTTTCGCAAGATCGCTGCATCGCTGCCTGGAATGGAGGCGCTCTCATCGGCAAAGCAGGAAGACATGGTGGACATAAACCTACGGCCTGCTGCCTCCGGGCAAATACCTTCAGGGGCAGAAGCACA AGAAGAACAGAAAGCAGGCCGGTTGTTCCTGCTGAGAGTTTTGTATTCAGGGAAATCGAGGTCGCTTCAGAGTTCAGACTTCAAATTAGTACACACAGTGAAT ] [-] EMBL CF332149 [ GCACAGGAGCACGGCGCCATGTTCATGGAAACCAGCGCAAAAGCTGGATTCAACATCAAGCCACTGTTTCGCAAGATCGCTGCATCGCTGCCTGGAATGGAGGCGCTCTCATCGGCAAAGCAGGAAGACATGGTGGACATAAACCTACGGCCTGCTGCCTCCGGGCAAATACCTTCAGGGGCAGAAGCACA AGAAGAACAGAAAGCAGG CGGTTGTTCCTGCTGAGAGTTTTGTATTCAGGGAAATCGAGGTCGCTTCAGAGTTCAGACTTCAAATTAGTACACACAGTGAATTTCAGGTAGCTTGGATTGTCAGTGCCGATTCGAGTATAGAGAATATTTATGTGTAATTTTTAACAGCGGCATCTAGGTTTGAAACAGCCAAAA ] [-] EMBL CF313610 [ gggtttTCATCGGCAAAGCAGGAAAACATGGTGGACATAAACCTAGGGCCTGTTGCCTCCGGGCAAATCCTTTCAGGGGCAGAAGCCCA AGAAGACCAGAAAGCAGG CGGTTGTTCCTGTTGAGAGTTTTGTATTCAGGGAAATCGAGGTCGTTTCAGAGTTCAGATTTCAAATTAGTACCCCCATTGAATTTCAGGTAGCTTGGATTGTCAGTGCCGATTCGAGTATAAAGAATATTTATGTGTAATTTTTAACAGCGGCATTTAGGTTTGAAACAGACAAAAATTCCCTGAAGTTTTTATGTTTTATCCCGCATAAAAAAAAAAAAAAAAAAACCCTGTCATGCCGTTACGTAGGGTATCGTTGCCAGCAAAAAAAAAAAAAAAAAACCCTGTCATGCCGTTACGTAGGGTATCGTTGACAGCAAGA] [+] EMBL CF333870 [ GAATTTCAGGTAGCTTGGATTGTCAGTGCCGATTCGAGTATAGAGAATATTTATGTGTAATTTTTAACAGCGGCATCTAGGTTTGAAACAGACAAAAATTCCCTAAAAA ] [-] EMBL CF333871 [ AATTTCAGGTAGCTTGGATTGTCAGTGCCGATTCGAGTATAGAGAATATTTATGTGTAATTTTTAACAGCGGCATCTAGGTTTGAAACAGACAAAAATTCCCTAAAAAa ] consensusID : consensus_14138#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 429 fasta sequence [GCCCTTGTTACAAGAGGCAAATATCCACTGACGAAGGAGAAGCCAAGGCACAGGAGCCCGGCGCCATGTTCATGGAAACCAGCGCAAAAGCTGGATTCAACATCAACCCACTGTTTCGCAAGATCGCTGCATCGCTGCCTGGAATGGAGGCGCTTTCATCGGCAAAGCAGGAAGACATGGTGGACATAAACTTACGGCCTGCTGCCTCCGGGCAAATCCCTTCAGGGGCAGAAGCCCAAGAAGACCAGAAAGCAGGCGGTTGTTCCTGCTGAGAGTTTTGTATTCAGGGAAATCGAGGTCGCTTCAGAGTTCAGACTTCAAATTAGTACACCCAGTGAATTTCAGGTAGCTTGGATTGTCAGTGCCGATTCGAGTATAGAGAATATTTATGTGTAATTTTTACCAGCGGCAAAAAAAAAAAAAAAAAAA] [-] EMBL CF316948 [GCCCTTGTTACAAGAGGCAAATATCCACTGACGAAGGAGAAGCCAAGGCACAGGAGCCCGGCGCCATGTTCATGGAAACCAGCGCAAAAGCTGGATTCAACATCAACCCACTGTTTCGCAAGATCGCTGCATCGCTGCCTGGAATGGAGGCGCTTTCATCGGCAAAGCAGGAAGACATGGTGGACATAAACTTACGGCCTGCTGCCTCCGGGCAAATCCCTTCAGGGGCAGAAGCCCAAGAAGACCAGAAAGCAGGCGGTTGTTCCTGCTGAGAGTTTTGTATTCAGGGAAATCGAGGTCGCTTCAGAGTTCAGACTTCAAATTAGTACACCCAGTGAATTTCAGGTAGCTTGGATTGTCAGTGCCGATTCGAGTATAGAGAATATTTATGTGTAATTTTTACCAGCGGCAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14138#0 CAAAAACAAAGCTTCGAAACGCAAAAGTCGCCTCTTTCCTTCTCCGTTCAAAGCAAGCCC 60 consensus_14138#1 ------------------------------------------------------------ consensus_14138#0 ACCTCGTTCCTCCTCCTTTACACCTTCCTCTTTTCCTCATCTGCACGCGTTCGTCCAAAC 120 consensus_14138#1 ------------------------------------------------------------ consensus_14138#0 TCCGAAACAAGAAAGCTCAAACTCGATTTCGAAATTTTCGAAGCCCCAATTCTCTCCTCC 180 consensus_14138#1 ------------------------------------------------------------ consensus_14138#0 CACACGCGGAATCGATCAGCGCAGCGCAGGGTAGGCTAGGCGTCGGCGTGCTGTGATGGC 240 consensus_14138#1 ------------------------------------------------------------ consensus_14138#0 GCCGGTGGTGTCGGCGCTGGCCAAGTACAAGCTGGTGTTCCTCGGCGACCAGGCGGTGGG 300 consensus_14138#1 ------------------------------------------------------------ consensus_14138#0 GAAGACGGCCATCATCACCCGCTTCATGTACGACAAGTTCGACGCCACCTACCAGGCGAC 360 consensus_14138#1 ------------------------------------------------------------ consensus_14138#0 GATCGGGATCGATTTCCTCTCCAAGACGATGTACCTCGAAGACCGAACCGTACGGCTGCA 420 consensus_14138#1 ------------------------------------------------------------ consensus_14138#0 GCTTTGGGATACAGCTGGGCAGGAGAGGTTCCGGAGCTTGATCCCAAGTTACATCAGGGA 480 consensus_14138#1 ------------------------------------------------------------ consensus_14138#0 TTCTTCTGTGGCAGTGATTGTTTACGATGTGACTGACAGGCAGTCCTTTTTGAGTATATC 540 consensus_14138#1 ------------------------------------------------------------ consensus_14138#0 GAAGTGGATTGAAGAGGTAAATACACAACGAGGCGGAGATGTGATCATCGTCCTTGTTGG 600 consensus_14138#1 ------------------------------------------------------------ consensus_14138#0 AAATAAAACAGACCTTGTTGACAAGAGGCAAATATCCACTGACGAAGGAGAAGCCAAGGC 660 consensus_14138#1 ----------GCCCTTGTT-ACAAGAGGCAAATATCCACTGACGAAGGAGAAGCCAAGGC 49 * ******* **************************************** consensus_14138#0 ACAGGAGCACGGCGCCATGTTCATGGAAACCAGCGCAAAAGCTGGATTCAACATCAAGCC 720 consensus_14138#1 ACAGGAGCCCGGCGCCATGTTCATGGAAACCAGCGCAAAAGCTGGATTCAACATCAACCC 109 ******** ************************************************ ** consensus_14138#0 ACTGTTTCGCAAGATCGCTGCATCGCTGCCTGGAATGGAGGCGCTCTCATCGGCAAAGCA 780 consensus_14138#1 ACTGTTTCGCAAGATCGCTGCATCGCTGCCTGGAATGGAGGCGCTTTCATCGGCAAAGCA 169 ********************************************* ************** consensus_14138#0 GGAAGACATGGTGGACATAAACCTACGGCCTGCTGCCTCCGGGCAAATACCTTCAGGGGC 840 consensus_14138#1 GGAAGACATGGTGGACATAAACTTACGGCCTGCTGCCTCCGGGCAAATCCCTTCAGGGGC 229 ********************** ************************* *********** consensus_14138#0 AGAAGCACAAGAAGAACAGAAAGCAGGCGGTTGTTCCTGCTGAGAGTTTTGTATTCAGGG 900 consensus_14138#1 AGAAGCCCAAGAAGACCAGAAAGCAGGCGGTTGTTCCTGCTGAGAGTTTTGTATTCAGGG 289 ****** ******** ******************************************** consensus_14138#0 AAATCGAGGTCGCTTCAGAGTTCAGACTTCAAATTAGTACACACAGTGAATTTCAGGTAG 960 consensus_14138#1 AAATCGAGGTCGCTTCAGAGTTCAGACTTCAAATTAGTACACCCAGTGAATTTCAGGTAG 349 ****************************************** ***************** consensus_14138#0 CTTGGATTGTCAGTGCCGATTCGAGTATAGAGAATATTTATGTGTAATTTTTAACAGCGG 1020 consensus_14138#1 CTTGGATTGTCAGTGCCGATTCGAGTATAGAGAATATTTATGTGTAATTTTTACCAGCGG 409 ***************************************************** ****** consensus_14138#0 CATCTAGGTTTGAAACAGACAAAAATTCCCTGAAAATTCTATGTTTTAAAAAGCATAAAA 1080 consensus_14138#1 CAAAAAA-----AAAAAAAAAAAAA----------------------------------- 429 ** * *** * * ***** consensus_14138#0 AAAAAAAAAAAAAAACCCTGTCATGCCGTTACGTAGGGTATCGTTGCCAGCAAAAAAAAA 1140 consensus_14138#1 ------------------------------------------------------------ consensus_14138#0 AAAAAAAAACCCTGTCATGCCGTTACGTAGGGTATCGTTGACAGCAAGA 1189 consensus_14138#1 ------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||