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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14138#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 1189 fasta sequence
[CAAAAACAAAGCTTCGAAACGCAAAAGTCGCCTCTTTCCTTCTCCGTTCAAAGCAAGCCCACCTCGTTCCTCCTCCTTTACACCTTCCTCTTTTCC-TCATCTGCACGCGTTCGTCCAAACTCCGAAACAAGAAAGCTCAAACTCGATTTCGAAATTTTCGAAGCCCCAATTCTCTCCTCCCACACGCGGAATCGATCAGCGCAGCGCAGGGTAGGCTAGGCGTCGGCGTGCTGTGATGGCGCCGGTGGTGTCGGCGCTGGCCAAGTACAAGCTGGTGTTCCTCGGCGACCAGGCGGTGGGGAAGACGGCCATCATCACCCGCTTCATGTACGACAAGTTCGACGCCACCTACCAGGCGACGATCGGGATCGATTTCCTCTCCAAGACGATGTACCTCGAAGACCGAACCGTACGGCTGCAGCTTTGGGATACAGCTGGGCAGGAGAGGTTCCGGAGCTTGATCCCAAGTTACATCAGGGATTCTTCTGTGGCAGTGATTGTTTACGATGTGACTGACAGGCA-GTCCTTTTTGAGTATATCGAAGTGGATTGAAGAGGTAAATACACA-ACGAGGCGGAGATGTGATCATCGTCCTTGTTGGAAATAAAACAGACCTTGTTGACAAGAGGCAAATATCCACTGACGAAGGAGAAGCCAAGGCACAGGAGCACGGCGCCATGTTCATGGAAACCAGCGCAAAAGCTGGATTCAACATCAAGCCACTGTTTCGCAAGATCGCTGCATCGCTGCCTGGAATGGAGGCGCTCTCATCGGCAAAGCAGGAAGACATGGTGGACATAAACCTACGGCCTGCTGCCTCCGGGCAAATACCTTCAGGGGCAGAAGCACA-AGAAGAACAGAAAGCAGG-CGGTTGTTCCTGCTGAGAGTTTTGTATTCAGGGAAATCGAGGTCGCTTCAGAGTTCAGACTTCAAATTAGTACACACAGTGAATTTCAGGTAGCTTGGATTGTCAGTGCCGATTCGAGTATAGAGAATATTTATGTGTAATTTTTAACAGCGGCATCTAGGTTTGAAACAGACAAAAATTCCCTGAAAATTCTATGTTTTAAAAAGCATAAAAAAAAAAAAAAAAAAACCCTGTCATGCCGTTACGTAGGGTATCGTTGCCAGCAAAAAAAAAAAAAAAAAACCCTGTCATGCCGTTACGTAGGGTATCGTTGACAGCAAGA]
[+] EMBL CF313611 [CAAAAACAAAGCTTCGAAACGCAAAAGTCGCCTCTTTCCTTCTCCGTTCAAAGCAAGCCCACCTCGTTCCTCCTCCTTTACACCTTCCTCTTTTCCATCATCTGCACGCGTTCGTCCAAACTCCGAAACAAGAAAGCTCAAACTCGATTT TTATTTTTCGAAGCCCCAATTCTCTCCTCCC ]
[+] EMBL CF316949 [ CTCTTTTCCATCATCTGCACGCGTTCGTCCAAACTCCGAAACAAGAAAGCTCAAACTCGATTTCGAAATTTTCGAAGCCCCAATTCTCTCCTCCCACACGCGGAATCGATCAGCGCAGCGCAGGGTAGGCTAGGCGTCGGCGTGCTGTGATGGCGCCGGTGGTGTCGGCGCTGGCCAAGTACAAGCTGGTGTTCCTCGGCGACCAGGCGGTGGGGAAGACGGCCATCATCACCCGCTTCATGTACGACAAGTTCGACGCCACCTACCAGGCGACGATCGGGATCGATTTCCTCTCCAAGACGATGTACCTCGAAGACCGAACCGTACGGCTGCAGCTTTGGGATACAGCTGGGCAGGAGAGGTTCCGGAGCTTGATCCCAAGTTACATCAGGGATTCTTCTGTGGCAGTGATTGTTTACGATGTGACTGACAGGCA GTCCTTTTTGAGT TATCGAAGTGGATTGAAGAGGTAAATACACA ACGAGGCGGAGATGT ]
[+] EMBL CF320947 [ CTCTTTTCC TCATCTGCACGCGTCCGT CAAACTCCGAAACAAGAAAGCTCAAACTCGATTGCGAAATTTTCGAAGCCCCAATTCTCTCCTCCCACACGCGGAATCGATCAGCGCAGCGCAGGGTAGGCTAGGCGTCGGCGTGCTGTGATGGCGCCGGTGGTGTCGGCGCTGGCCAAGTACAAGCTGGTGTTCCTCGGCGACCATGCGGTGGGGAAGACGGCCATCATCACCCGCTTCATGTACGACAAGCTCGACGCCACCTACCATGCGACGATCGGGATCGATTTCCTCTCCAAGACGATGTACCTCGAAGACCGAACCGTACGGCTGCAGCTTTGGGATACAGCTGGGCAGGAGAGGTTCCGGAGCTTGATCCCAAGTTACATCAGGGACTCTTCTGTGGCAGTGATTGTTTACGA ]
[+] EMBL CF312974 [ TCTTTTCC TCATCTGCACGCGTTCGTCCAAACTCCGAAACAAGAAAGCTCAAACTCGATTTCGAAATTTTCGAAGCCCCAATTCTCTCCTCCCACACGCGGAATCGATCAGCGCAGCGCAGGGTAGGCTAGGCGTCGGCGTGCTGTGATGGCGCCGGTGGTGTCGGCGCTGGCCAAGTACAAGCTGGTGTTCCTCGGCGACCAGGCGGTGGGGAAGACGGCCATCATCACCCGCTTCATGTACGACAAGTTCGACGCCACCTACCAGGCGACGATCGGGATCGATTTCCTCTCCAAGACGATGTACCTCGAAGACCGAACCGTACGGCTGCAGCTTTGGGATACAGCTGGGCAGGAGAGGTTCCGGAGCTTGATCCCAAGTTACATCAGGGATTCTTCTGTGGCAGTGATTGTTTACGATGTGACTGACAGGCA GTCCTTTTTGAGTATATCGAAGTGGATTGAAGAGGTAAATACACA ACGAGGCGGAGATGTGATCATCGTCCTTGTTGGAAATAAAACAGACCTTGTTGACAAGAGGCAAATATCCACTGACGAAGGAGAAGCCAAGGCACAGGAGCACGGCGCCATG ]
[+] EMBL CF310747 [ CTCAAACTCGATTTCGAAATTTTCGAAGCCCCAATTCTCTCCTCCCACACGCGGAATCGATCAGCGCAGCGCAGGGTAGGCTAGGCGTCGGCGTGCTGTGATGGCGCCGGTGGTGTCGGCGCTGGCCAAGTACAAGCTGGTGTTCCTCGGCGACCAGGCGGTGGGGAAGACGGCCATCATCACCCGCTTCATGTACGACAAGTTCGACGCCACCTACCAGGCGACGATCGGGATCGATTTCCTCTCCAAGACGATGTACCTCGAAGACCGAACCGTACGGCTGCAGCTTTGGGATACAGCTGGGCAGGAGAGGTTCCGGAGCTTGATCCCAAGTTACATCAGGGATTCTTCTGTGGCAGTGATTGTTTACGATGTGACTGACAGGCA GTCCTTTTTGAGTATATCGAAGTGGATTGAAGAGGTAAATACACA ACGAGGCGGAGATGTGATCATCGTCCTTGTTGGAAATAAAACAGACCTTGTTGACAAGAGGCAAATATCCACTGACGAAGGAGAAGCCAAGGCACAGGAGCACGGCGCCATGTTCATGGAAACCAGCGCAAAAGCTGGATTCAACATCAAGCCACTGTTTCGCAAGATCGCTGCATCGC ]
[+] EMBL BI812071 [ GATTGTTTACGATGTGACTGACA GCACGTCCTTTTTGAGTATATCGAAGTGGATTGAAGAGGTAAATACACACACGA GCGGAGATGTGATCATCGTCCTTGTTGGAAATAAAACAGACCTTGTTGACAAGAGGCAAATATCCACTGACGAAGGAGAAGCCAAGGCACAGGAGCACGGCGCCATGTTCATGGAAACCAGCGCAAAAGCTGGATTCAACATCAAGCCACTGTTTCGCAAGATCGCTGCATCGCTGCCTGGAATGGAGGCGCTCTCATCGGCAAAGCAGGAAGACATGGTGGACATAAACCTACGGCCTGCTGCCTCCGGGCAAATACCTTCAGGGGCAGAAGCACACAGAAGAACAGAAAGCAGG CGGTTGTTCCTGCTGAGAGTTTTGTATTCAGGGAAATCGAGGTCGCTTCAGAGTTCAGACTTCAAATTAGTACACACAGTGAATTTCAGGTAGCTTGGATTGTCAGTGCCGATTCGAGTATAGAGAATATTTATGTGTAATTTTTAACAGCGGCATCTAGGTTTGAAACAGACAAAAATTCCCTGAAGTTTCTATGTTTTAAAAA ]
[-] EMBL CF310748 [ TTGTTTACGATGTGACTGACAGGCA GTCCTTTTTGAGTATATCGAAGTGGATTGAAGAGGTAAATACACA ACGAGGCGGAGATGTGATCATCGTCC TGTTGGAAATAAAACAGACCTTGTTGACAAGAGGCAAATATCCACTGACGAAGGAGAAGCCAAGGCACAGGAGCACGGCGCCATGTTCATGGAAACCAGCGCAAAAGCTGGATTCAACATCAAGCCACTGTTTCGCAAGATCGCTGCATCGCTGCCTGGAATGGAGGCGCTCTCATCGGCAAAGCAGGAAGACATGGTGGACATAAACCTACGGCCTGCTGCCTCCGGGCAAATACCTTCAGGGGCAGAAGCACA AGAAGAACAGAAAGCAGG CGGTTGTTCCTGCTGAGAGTTTTGTATTCAGGGAAATCGAGGTCGCTTCAGAGTTCAGACTTCAAATTAGTACACACAGTGAATTTCAGGTAGCTTGGATTGTCAGTGCCGATTCGAGTATAGAGAATATTTATGTGTAATTTTTAACAGCGGCATCTAGGTTTGAAACAGACAAAAATTCCCTGAAAAaa ]
[-] EMBL CF312973 [ GTATATCGAAGTGGATTGAAGAGGTAAATACACA ACGAGGCGGAGATGTGATCATCGTCCTTG TGGAAATAAAACAGACCTTGTTGACAAGAGGCAAATATCCACTGACGAAGGAGAAGCCAAGGCACAGGAGCACGGCGCCATGTTCATGGAAACCAGCGCAAAAGCTGGATTCAACATCAAGCCACTGTTTCGCAAGATCGCTGCATCGCTGCCTGGAATGGAGGCGCTCTCATCGGCAAAGCAGGAAGACATGGTGGACATAAACCTACGGCCTGCTGCCTCCGGGCAAATACCTTCAGGGGCATAAGCACA AGAAGAACAGAAAGCAGG CGGTTGTTCCTGCTGAGAGTTTTGTATTCAGGGAAATCGAGGTCGCTTCAGAGTTCAGACTTCAAATTAGTACACACAGTGAATTTCAGGTAGCTTGGATTGTCAGTGCCGATTCGAGTATAGAGAATATTTATGTGTAATTTTTAAaaaaa ]
[-] EMBL CA305841 [ TGTTGGAAATAAAACANTCCTTGTTNACAAGAGGCTAATATCCNCTCACGAAGCAGAAGCCAAGGCACAGCAGCTCGGCGCCTTGTTCATGNAAACCAGCGCAAAAGCTGGATTCAACATCAAGCCACTGTTTCGCAAGATCGCTGCATCGCTGCCTGGAATGGAGGCGCTCTCATCGGCAAAGCAGGAAGACATGGTGGACATAAACCTACGGCCTGCTGCCTCCGGGCAAATACCTTCAGGGGCAGAAGCACA AGAAGAACAGAAAGCAGG CGGTTGTTCCTGCTGAGAGTTTTGTATTCAGGGAAATCGAGGTCGCTTCAGAGTTCAG ]
[+] EMBL CF332148 [ GGCACAGGAGCACGGCGCCATGTTCATGGAAACCAGCGCAAAAGCTGGATTCAACATCAAGCCACTGTTTCGCAAGATCGCTGCATCGCTGCCTGGAATGGAGGCGCTCTCATCGGCAAAGCAGGAAGACATGGTGGACATAAACCTACGGCCTGCTGCCTCCGGGCAAATACCTTCAGGGGCAGAAGCACA AGAAGAACAGAAAGCAGGCCGGTTGTTCCTGCTGAGAGTTTTGTATTCAGGGAAATCGAGGTCGCTTCAGAGTTCAGACTTCAAATTAGTACACACAGTGAAT ]
[-] EMBL CF332149 [ GCACAGGAGCACGGCGCCATGTTCATGGAAACCAGCGCAAAAGCTGGATTCAACATCAAGCCACTGTTTCGCAAGATCGCTGCATCGCTGCCTGGAATGGAGGCGCTCTCATCGGCAAAGCAGGAAGACATGGTGGACATAAACCTACGGCCTGCTGCCTCCGGGCAAATACCTTCAGGGGCAGAAGCACA AGAAGAACAGAAAGCAGG CGGTTGTTCCTGCTGAGAGTTTTGTATTCAGGGAAATCGAGGTCGCTTCAGAGTTCAGACTTCAAATTAGTACACACAGTGAATTTCAGGTAGCTTGGATTGTCAGTGCCGATTCGAGTATAGAGAATATTTATGTGTAATTTTTAACAGCGGCATCTAGGTTTGAAACAGCCAAAA ]
[-] EMBL CF313610 [ gggtttTCATCGGCAAAGCAGGAAAACATGGTGGACATAAACCTAGGGCCTGTTGCCTCCGGGCAAATCCTTTCAGGGGCAGAAGCCCA AGAAGACCAGAAAGCAGG CGGTTGTTCCTGTTGAGAGTTTTGTATTCAGGGAAATCGAGGTCGTTTCAGAGTTCAGATTTCAAATTAGTACCCCCATTGAATTTCAGGTAGCTTGGATTGTCAGTGCCGATTCGAGTATAAAGAATATTTATGTGTAATTTTTAACAGCGGCATTTAGGTTTGAAACAGACAAAAATTCCCTGAAGTTTTTATGTTTTATCCCGCATAAAAAAAAAAAAAAAAAAACCCTGTCATGCCGTTACGTAGGGTATCGTTGCCAGCAAAAAAAAAAAAAAAAAACCCTGTCATGCCGTTACGTAGGGTATCGTTGACAGCAAGA]
[+] EMBL CF333870 [ GAATTTCAGGTAGCTTGGATTGTCAGTGCCGATTCGAGTATAGAGAATATTTATGTGTAATTTTTAACAGCGGCATCTAGGTTTGAAACAGACAAAAATTCCCTAAAAA ]
[-] EMBL CF333871 [ AATTTCAGGTAGCTTGGATTGTCAGTGCCGATTCGAGTATAGAGAATATTTATGTGTAATTTTTAACAGCGGCATCTAGGTTTGAAACAGACAAAAATTCCCTAAAAAa ]
consensusID : consensus_14138#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 429 fasta sequence
[GCCCTTGTTACAAGAGGCAAATATCCACTGACGAAGGAGAAGCCAAGGCACAGGAGCCCGGCGCCATGTTCATGGAAACCAGCGCAAAAGCTGGATTCAACATCAACCCACTGTTTCGCAAGATCGCTGCATCGCTGCCTGGAATGGAGGCGCTTTCATCGGCAAAGCAGGAAGACATGGTGGACATAAACTTACGGCCTGCTGCCTCCGGGCAAATCCCTTCAGGGGCAGAAGCCCAAGAAGACCAGAAAGCAGGCGGTTGTTCCTGCTGAGAGTTTTGTATTCAGGGAAATCGAGGTCGCTTCAGAGTTCAGACTTCAAATTAGTACACCCAGTGAATTTCAGGTAGCTTGGATTGTCAGTGCCGATTCGAGTATAGAGAATATTTATGTGTAATTTTTACCAGCGGCAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF316948 [GCCCTTGTTACAAGAGGCAAATATCCACTGACGAAGGAGAAGCCAAGGCACAGGAGCCCGGCGCCATGTTCATGGAAACCAGCGCAAAAGCTGGATTCAACATCAACCCACTGTTTCGCAAGATCGCTGCATCGCTGCCTGGAATGGAGGCGCTTTCATCGGCAAAGCAGGAAGACATGGTGGACATAAACTTACGGCCTGCTGCCTCCGGGCAAATCCCTTCAGGGGCAGAAGCCCAAGAAGACCAGAAAGCAGGCGGTTGTTCCTGCTGAGAGTTTTGTATTCAGGGAAATCGAGGTCGCTTCAGAGTTCAGACTTCAAATTAGTACACCCAGTGAATTTCAGGTAGCTTGGATTGTCAGTGCCGATTCGAGTATAGAGAATATTTATGTGTAATTTTTACCAGCGGCAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14138#0 CAAAAACAAAGCTTCGAAACGCAAAAGTCGCCTCTTTCCTTCTCCGTTCAAAGCAAGCCC 60
consensus_14138#1 ------------------------------------------------------------
consensus_14138#0 ACCTCGTTCCTCCTCCTTTACACCTTCCTCTTTTCCTCATCTGCACGCGTTCGTCCAAAC 120
consensus_14138#1 ------------------------------------------------------------
consensus_14138#0 TCCGAAACAAGAAAGCTCAAACTCGATTTCGAAATTTTCGAAGCCCCAATTCTCTCCTCC 180
consensus_14138#1 ------------------------------------------------------------
consensus_14138#0 CACACGCGGAATCGATCAGCGCAGCGCAGGGTAGGCTAGGCGTCGGCGTGCTGTGATGGC 240
consensus_14138#1 ------------------------------------------------------------
consensus_14138#0 GCCGGTGGTGTCGGCGCTGGCCAAGTACAAGCTGGTGTTCCTCGGCGACCAGGCGGTGGG 300
consensus_14138#1 ------------------------------------------------------------
consensus_14138#0 GAAGACGGCCATCATCACCCGCTTCATGTACGACAAGTTCGACGCCACCTACCAGGCGAC 360
consensus_14138#1 ------------------------------------------------------------
consensus_14138#0 GATCGGGATCGATTTCCTCTCCAAGACGATGTACCTCGAAGACCGAACCGTACGGCTGCA 420
consensus_14138#1 ------------------------------------------------------------
consensus_14138#0 GCTTTGGGATACAGCTGGGCAGGAGAGGTTCCGGAGCTTGATCCCAAGTTACATCAGGGA 480
consensus_14138#1 ------------------------------------------------------------
consensus_14138#0 TTCTTCTGTGGCAGTGATTGTTTACGATGTGACTGACAGGCAGTCCTTTTTGAGTATATC 540
consensus_14138#1 ------------------------------------------------------------
consensus_14138#0 GAAGTGGATTGAAGAGGTAAATACACAACGAGGCGGAGATGTGATCATCGTCCTTGTTGG 600
consensus_14138#1 ------------------------------------------------------------
consensus_14138#0 AAATAAAACAGACCTTGTTGACAAGAGGCAAATATCCACTGACGAAGGAGAAGCCAAGGC 660
consensus_14138#1 ----------GCCCTTGTT-ACAAGAGGCAAATATCCACTGACGAAGGAGAAGCCAAGGC 49
* ******* ****************************************
consensus_14138#0 ACAGGAGCACGGCGCCATGTTCATGGAAACCAGCGCAAAAGCTGGATTCAACATCAAGCC 720
consensus_14138#1 ACAGGAGCCCGGCGCCATGTTCATGGAAACCAGCGCAAAAGCTGGATTCAACATCAACCC 109
******** ************************************************ **
consensus_14138#0 ACTGTTTCGCAAGATCGCTGCATCGCTGCCTGGAATGGAGGCGCTCTCATCGGCAAAGCA 780
consensus_14138#1 ACTGTTTCGCAAGATCGCTGCATCGCTGCCTGGAATGGAGGCGCTTTCATCGGCAAAGCA 169
********************************************* **************
consensus_14138#0 GGAAGACATGGTGGACATAAACCTACGGCCTGCTGCCTCCGGGCAAATACCTTCAGGGGC 840
consensus_14138#1 GGAAGACATGGTGGACATAAACTTACGGCCTGCTGCCTCCGGGCAAATCCCTTCAGGGGC 229
********************** ************************* ***********
consensus_14138#0 AGAAGCACAAGAAGAACAGAAAGCAGGCGGTTGTTCCTGCTGAGAGTTTTGTATTCAGGG 900
consensus_14138#1 AGAAGCCCAAGAAGACCAGAAAGCAGGCGGTTGTTCCTGCTGAGAGTTTTGTATTCAGGG 289
****** ******** ********************************************
consensus_14138#0 AAATCGAGGTCGCTTCAGAGTTCAGACTTCAAATTAGTACACACAGTGAATTTCAGGTAG 960
consensus_14138#1 AAATCGAGGTCGCTTCAGAGTTCAGACTTCAAATTAGTACACCCAGTGAATTTCAGGTAG 349
****************************************** *****************
consensus_14138#0 CTTGGATTGTCAGTGCCGATTCGAGTATAGAGAATATTTATGTGTAATTTTTAACAGCGG 1020
consensus_14138#1 CTTGGATTGTCAGTGCCGATTCGAGTATAGAGAATATTTATGTGTAATTTTTACCAGCGG 409
***************************************************** ******
consensus_14138#0 CATCTAGGTTTGAAACAGACAAAAATTCCCTGAAAATTCTATGTTTTAAAAAGCATAAAA 1080
consensus_14138#1 CAAAAAA-----AAAAAAAAAAAAA----------------------------------- 429
** * *** * * *****
consensus_14138#0 AAAAAAAAAAAAAAACCCTGTCATGCCGTTACGTAGGGTATCGTTGCCAGCAAAAAAAAA 1140
consensus_14138#1 ------------------------------------------------------------
consensus_14138#0 AAAAAAAAACCCTGTCATGCCGTTACGTAGGGTATCGTTGACAGCAAGA 1189
consensus_14138#1 -------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||