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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14139#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 2153 fasta sequence
[GCGAGTCCTCTTCCTGCCCTGCCCTGCCCTGCCCTGCATTCTTTCTTTCTCCACCAGGGGAATCCAGTTCACCCCCAGTGCTGCTTCTGCTGCTGCTTCTGCATCATCTTGCCCTGTTAAAAAGACACAGTGCCCTTGTTCTTTCGCAGTTGCAACTAGCATCTCCTCCTCTACTTGTACTCACTTCACACCTCAGCTCAGCTCAGCTCATCTCCTGTCATCTCAGCTCAAAGAGAAAGAGCTGAAGGTGTAAGCTGATCACCAGGAAGCAGAGGCTTTTTTTCAGATTACAGTTATCTGAAACAACCAACTTCAGAATCAATCAGCAAAGGTAGAAACAAGACAGAGCTGCTGTGCTTCTGTGATTAATTAGGGTTGTTAATGCCATGAACCAGTTCGTCCCTGATTGGAACACCACCAGCATGGGCGACGGCTTTGCGCCATTAGGCGAAGACGACGGGCTCGTCGAGCTGCTATGGTGCAATGGCCACGTCGTCATGCAGAGCCAGGCGCCGCGGAAGCCGCCGAGGCCGGAGAAGACGACGGCGGCGGCGGCGGCGGCGATGGCGGAGGATGAGTCGGCGTCGTGGTTTCAGTACCCGGTCGACGACGTGCTTGAGAAGGACCTGTTCACCGAGCTGTTCGGCGAAATGACGGCGGCCGGCGGCGGCGGCGGCGACGTCCGCAGGGCGGCGTGCAAGGAGGAGCGCGGCGCGGTCGCCGCGTTCCAGAGCAGGATGATGCCGCCGCCGTGGCCGGCGAGGGGGAAGGCGGAGTTCGGTGACGTCGACGACGTGTGCGGCGTCTCGGAGGTCGTCATGGCGAAGATGGACGGGGCGGCGGCGGCGGAGACGGTCGGCGAGTCATCGATGCTGACAATCGGGTCGAGCATCTGCGGGAGCAACCACGTCCAGACGCCGCCGGTGGGGAACGGGAAGGCCGGCGCCGGCACCGCCGGCGCCGCCAGAAGGGCGCACGACACGGCGACGGTGGCGTCGTCGTCGATGAGGTCGAGGTCCTGCACCGCCAAGGCCGAGCCGCGCGACGTCGCAGCCGCCGGCGTCGGCGGCAAGCGGAAGCAGCGCGGCGGCGCCGCCATGGAGTCCGGGAGCCCCAGCGAGGACGTGGAGTTCGAGTCCGCCGCCGCAACGTGCTCGCCGGCGCAGAAGACGACGACGGCGAAGCGGCGGCGCGCCGCCGAGGTGCACAACCTCTCCGAGAGGAGGAGAAGAGATAGGATCAATGAGAAGATGAAAGCATTACAGGAGCTCATACCTCACTGCAACAAAACGGACAAAGCATCGATGCTGGATGAAGCGATCGAGTATCTCAAGTCACTGCAGCTCCAGCTACAGATGATGTGGATGGGCGGCGGAATGGCGCCGCCGGCGGTGATGTTCCCGGCGGCCGGCGTGCACCAGTACATGCAGCGGATGGGCGCCGTCGGGATGGGCCCACCACACATGGCGTCCCTGCCGAGGATGCCGCCGTTCATGGCGCCGCCGCCCGCCGCCGTGCAGAGCTCGCCGGTGGTCAGCATGGCCGACCCCTACGCCCGCTGCCTCGCCGTCGACCACCTCCAGCCACCGCCTCCGAT---GCATTACCTGCAGGGGATGAGCTTCTACCAGCTCGCCGCGGCCAAGAACCTTCAGCAGCAGCAGAACACGGCGGAGGCGCCGCCACCGCCACCGGCCGGAGGCAACCGCGCAGCCGCTGACTCCTGACGACATTCTGCACAAAAAATACG----ACAACTGTAGTAAGTCTGAGAGCAAGGGTGGCACCAGTTGATTGCCGTCAATCTGAAGATATGTATATAAGGCTCTGATGCAATTGAGTTGAGAGGCTGGATCATGATGGCTACCTAATCATTAAGGGGAATTTAAGATCATCCCTTTTACTGACGTCTAAATTCGGTAGGCAGTGTAGATCGATCAGCGGTTAAGAGTTAACAAGTCGTGAATTCTTTTTTGCTATGTATGTAGTACTATTTTTTCCCCTTTGGGGAGACATTGGTTATGTATCAGTTGTTGATGTACCTGTTCAAATTTATGCCAACCAGAGCAAATTGTATTATCATCCGCCTCAACTGTGTCATGTCATGTTAATTTAGCTGCATCTACCAAAGTACAAAGTCTTAATTAACCAAAAAAGGA]
[+] EMBL AK066763 [GCGAGTCCTCTTCCTGCCCTGCCCTGCCCTGCCCTGCATTCTTTCTTTCTCCACCAGGGGAATCCAGTTCACCCCCAGTGCTGCTTCTGCTGCTGCTTCTGCATCATCTTGCCCTGTTAAAAAGACACAGTGCCCTTGTTCTTTCGCAGTTGCAACTAGCATCTCCTCCTCTACTTGTACTCACTTCACACCTCAGCTCAGCTCAGCTCATCTCCTGTCATCTCAGCTCAAAGAGAAAGAGCTGAAGGTGTAAGCTGATCACCAGGAAGCAGAGGCTTTTTTTCAGATTACAGTTATCTGAAACAACCAACTTCAGAATCAATCAGCAAAGGTAGAAACAAGACAGAGCTGCTGTGCTTCTGTGATTAATTAGGGTTGTTAATGCCATGAACCAGTTCGTCCCTGATTGGAACACCACCAGCATGGGCGACGGCTTTGCGCCATTAGGCGAAGACGACGGGCTCGTCGAGCTGCTATGGTGCAATGGCCACGTCGTCATGCAGAGCCAGGCGCCGCGGAAGCCGCCGAGGCCGGAGAAGACGACGGCGGCGGCGGCGGCGGCGATGGCGGAGGATGAGTCGGCGTCGTGGTTTCAGTACCCGGTCGACGACGTGCTTGAGAAGGACCTGTTCACCGAGCTGTTCGGCGAAATGACGGCGGCCGGCGGCGGCGGCGGCGACGTCCGCAGGGCGGCGTGCAAGGAGGAGCGCGGCGCGGTCGCCGCGTTCCAGAGCAGGATGATGCCGCCGCCGTGGCCGGCGAGGGGGAAGGCGGAGTTCGGTGACGTCGACGACGTGTGCGGCGTCTCGGAGGTCGTCATGGCGAAGATGGACGGGGCGGCGGCGGCGGAGACGGTCGGCGAGTCATCGATGCTGACAATCGGGTCGAGCATCTGCGGGAGCAACCACGTCCAGACGCCGCCGGTGGGGAACGGGAAGGCCGGCGCCGGCACCGCCGGCGCCGCCAGAAGGGCGCACGACACGGCGACGGTGGCGTCGTCGTCGATGAGGTCGAGGTCCTGCACCGCCAAGGCCGAGCCGCGCGACGTCGCAGCCGCCGGCGTCGGCGGCAAGCGGAAGCAGCGCGGCGGCGCCGCCATGGAGTCCGGGAGCCCCAGCGAGGACGTGGAGTTCGAGTCCGCCGCCGCAACGTGCTCGCCGGCGCAGAAGACGACGACGGCGAAGCGGCGGCGCGCCGCCGAGGTGCACAACCTCTCCGAGAGGAGGAGAAGAGATAGGATCAATGAGAAGATGAAAGCATTACAGGAGCTCATACCTCACTGCAACAAAACGGACAAAGCATCGATGCTGGATGAAGCGATCGAGTATCTCAAGTCACTGCAGCTCCAGCTACAGATGATGTGGATGGGCGGCGGAATGGCGCCGCCGGCGGTGATGTTCCCGGCGGCCGGCGTGCACCAGTACATGCAGCGGATGGGCGCCGTCGGGATGGGCCCACCACACATGGCGTCCCTGCCGAGGATGCCGCCGTTCATGGCGCCGCCGCCCGCCGCCGTGCAGAGCTCGCCGGTGGTCAGCATGGCCGACCCCTACGCCCGCTGCCTCGCCGTCGACCACCTCCAGCCACCGCCTCCGAT GCATTACCTGCAGGGGATGAGCTTCTACCAGCTCGCCGCGGCCAAGAACCTTCAGCAGCAGCAGAACACGGCGGAGGCGCCGCCACCGCCACCGGCCGGAGGCAACCGCGCAGCCGCTGACTCCTGACGACATTCTGCACAAAAAATACG ACAACTGTAGTAAGTCTGAGAGCAAGGGTGGCACCAGTTGATTGCCGTCAATCTGAAGATATGTATATAAGGCTCTGATGCAATTGAGTTGAGAGGCTGGATCATGATGGCTACCTAATCATTAAGGGGAATTTAAGATCATCCCTTTTACTGACGTCTAAATTCGGTAGGCAGTGTAGATCGATCAGCGGTTAAGAGTTAACAAGTCGTGAATTCTTTTTTGCTATGTATGTAGTACTATTTTTTCCCCTTTGGGGAGACATTGGTTATGTATCAGTTGTTGATGTACCTGTTCAAATTTATGCCAACCAGAGC ]
[+] EMBL CB656316 [ CAGTGCTGTTTCTGCTGCTGCTTCTGCATCATCTTGCCCTGTTAAAAAGACACAGTGCCCTTGTTCTTTCGCAGTTGCAACTAGCATCTCCTCCTCTACTTGTACTCACTTCACACCTCAGCTCAGCTCAGCTCATCTCCTGTCATCTCAGCTCAAAGAGAAAGAGCTGAAGGTGTAAGCTGATCACCAGGAAGCAGAGGCTTTTTTTCAGATTACAGTTATCTGAAACAACCAACTTCAGAATCAATCAGCAAAGGTAGAAACAAGACAGAGCTGCTGTGCTTCTGTGATTAATTAGGGTTGTTAATGCCATGAACCAGTTCGTCCCTGATTGGAACACCACCAGCATGGGCGACGGCTTTGCGCCATTAGGCGAAGACGACGGGCTCGTCGAGCTGCTATGGTGCAATGGCCACGTCGTCATGCAGAGCCAGGCGCCGCGGAAGCCGCCGAGGCCGGAGAAGACGACGGCGGCGGCGGCGGCGGCGATGGCGGAGGATGAGTCGGCGTCGTGGTTTCAGTACCCGGTCGACGACGTGCTTGAGAAGGACCTGTTCACCGAGCTGTTCGGCGAAATGACGGCGGCCGGCGGCGGCGGCGGCGACGTCCGCAGGGCGGCGTGCAAGGAGGAGCGCGGCGCGGTCGCCGCGTTCCAGAGCAGGATGATGCCGCCGCCGTGGCCGGCGAGGGGGAAGGCGGAGTTCGGTGACGTCGACGACGTG ]
[+] EMBL CB660503 [ GCTCAGCTCATCTCCTGTCATCTCAGCTCAAAGAGAAAGAGCTGAAGGTGTAAGCTGATCACCAGGAAGCAGAGGCTTTTTTTCAGATTACAGTTATCTGAAACAACCAACTTCAGAATCAATCAGCAAAGGTAGAAACAAGACAGAGCTGCTGTGCTTCTGTGATTAATTAGGGTTGTTAATGCCATGAACCAGTTCGTCCCTGATTGGAACACCACCAGCATGGGCGACGGCTTTGCGCCATTAGGCGAAGACGACGGGCTCGTCGAGCTGCTATGGTGCAATGGCCACGTCGTCATGCAGAGCCAGGCGCCGCGGAAGCCGCCGAGGCCGGAGAAGACGACGGCGGCGGCGGCGGCGGCGATGGCGGAGGATGAGTCGGCGTCGTGGTTTCAGTACCCGGTCGACGACGTGCTTGAGAAGGACCTGTTCACCGAGCTGTTCGGCGAAATGACGGCGGCCGGCGGCGGCGGCGGCGACGTCCGCAGGGCGGCGTGCAAGGAGGAGCGCGGCGCGGTCGCCGCGTTCCAGAGCAGGATGATGCCGCCGCCGTGGCCGGCGAGGGGGAAGGCGGAGTTCGGTGACGTCGACGACGTGTGCGGCGTCTCGGAGGTCGTCATGGCGAAGATGGACGGGGCGGCGGCGGCGGAGACGGTCGGCAAGTCATCGATGCTGACNATCGGGTCGAGCATCTGCGGGA ]
[+] EMBL CB664232 [ TGAAACAACCAACTTCAGAATCAATCAGCAAAGGTAGAAACAAGACAGAGCTGCTGTGCTTCTGTGATTAATTAGGGTTGTTAATGCCATGAACCAGTTCGTCCCTGATTGGAACACCACCAGCATGGGCGACGGCTTTGCGCCATTAGGCGAAGACGACGGGCTCGTCGAGCTGCTATGGTGCAATGGCCACGTCGTCATGCAGAGCCAGGCGCCGCGGAAGCCGCCGAGGCCGGAGAAGACGACGGCGGCGGCGGCGGCGGCGATGGCGGAGGATGAGTCGGCGTCGTGGTTTCAGTACCCGGTCGACGACGTGCTTGAGAAGGACCTGTTCACCGAGCTGTTCGGCGAAATGACGGCGGCCGGCGGCGGCGGCTGCAACCTCCGCAGGGCGGCGTGCAAGGAGGAGCGCGGCGCGGTCCCCCCGTTCCAGAGCAGGAT ]
[+] EMBL CB665190 [ TCACCCATCTGTTCGGCGAAATGACGGCGGCCGGCGGCGGCGGCGGCGACGTCCGCAGGGCGGCGTGCAAGGAGGAGCGCGGCGCGGTCGCCGCGTTCCAGAGCAGGATGATGCCGCCGCCGTGGCCGGCGAGGGGGAAGGCGGAGTTCGGTGACGTCGACGACGTGTGCGGCGTCTCGGAGGTCGTCATGGCGAAGATGGACGGGGCGGCGGCGGCGGAGACGGTCGGCGAGTCATCGATGCTGACAATCGGGTCGAGCATCTGCGGGAGCAACCACGTCCAGACGCCGCCGGTGGGGAACGGGAAGGCCGGCGCCGGCACCG ]
[-] EMBL CB650750 [ CGAGTATCTCAAGTCACTGCAGCTCCAGCTACAGATGATGTGGATGGGCGGCGGAATGGCGCCGCCGGCGGTGATGTTCCCGGCGGCCGGCGTGCACCAGTACATGCAGCGGATGGGCGCCGTCGGGATGGGCCCACCACACATGGCGTCCCTGCCGAGGATGCCGCCGTTCATGGCGCCGCCGCCCGCCGCCGTGCAGAGCTCGCCGGTGGTCAGCATGGCCGACCCCTACGCCCGCTGCCTCGCCGTCGACCACCTCCAGCCACCGCCTCCGAT GCATTACCTGCAGGGGATGAGCTTCTACCAGCTCGCCGCGGCCAAGAACCTTCAGCAGCAGCAGAACACGGCGGAGGCGCCGCCACCGCCACCGGCCGGAGGCAACCGCGCAGCCGCTGACTCCTGACGACATTCTGCACAAAAAATACGGTGTACAACTGTAGTAAGTCTGAGAGCAAGGGTGGCACCAGTTGATTGCCGTCAATCTGAAGATATGTATATAAGGCTCTGATGCAATTGAGTTGAGAGGCTGGATCATGATGGCTACCTAATCATTAAGGGGAATTTAAGATCATCCCTTTTACTGACGTCTAAATTCGGTAGGCAGTGTAGATCGATCAGCGGTTAAGAGTTAACAAGTCGTGAATTCTTTTTTGCTATGTATGTAGTACTATTTTTTCCCCTTTGGGGAGACATTGGTTATGTATCAGTTGTTGATGTACCGGTTCAAATTTATGCCAACCAGAGCAAATTGTA ]
[-] EMBL CB665191 [ TGGATGGGCGGCGGAATGGCGCCGCCGGCGGTGATGTTCCCGGCGGCCGGCGTGCACCAGTACATGCAGCGGATGGGCGCCGTCGGGATGGGCCCACCACACATGGCGTCCCTGCCGAGGATGCCGCCGTTCATGGCGCCGCCGCCCGCCGCCGTGCAGAGCTCGCCGGTGGTCAGCATGGCCGACCCCTACGCCCGCTGCCTCGCCGTCGACCACCTCCAGCCACCGCCTCCGATGCAGCATTACCTGCAGGGGATGAGCTTCTACCAGCTCGCCGCGGCCAAGAACCTTCAGCAGCAGCAGAACACGGCGGAGGCGCCGCCACCGCCACCGGCCGGAGGCAACCGCGCAGCCGCTGACTCCTGACGACATTCTGCACAAAAAATACG ACAACTGTAGTAAGTCTGAGAGCAAGGGTGGCACCAGTTGATTGCCGTCAATCTGAAGATATGTATATAAGGCTCTGATGCAATTGAGTTGAGAGGCTGGATCATGATGGCTACCTAATCATTAAGGGGAATTTAAGATCATCCCTTTTACTGACGTCTAAATTCGGTAGGCAGTGTAGATCGATCAGCGGTTAAGAGTTAACAAGTCGTGAATTCTTTTTTGCTATGTATGTAGTACTATTTTTTCCCCTTTGGGGAGACATTGGTTATGTATCAGTTGTTGATGTACCTGTTCAAATTTATGCCAACCAGAGCAAATTGTAT ]
[-] EMBL CB656317 [ GGATGGGCGGCGGAATGGCGCCGCCGGCGGTGATGTTCCCGGCGGCCGGCGTGCACCAGTACATGCAGCGGATGGGCGCCGTCGGGATGGGCCCACCACACATGGCGTCCCTGCCGAGGATGCCGCCGTTCATGGCGCCGCCGCCCGCCGCCGTGCAGAGCTCGCCGGTGGTCAGCATGGCCGACCCCTACGCCCGCTGCCTCGCCGTCGACCACCTCCAGCCACCGCCTCCGAT GCATTACCTGCAGGGGATGAGCTTCTACCAGCTCGCCGCGGCCAAGAACCTTCAGCAGCAGCAGAACACGGCGGAGGCGCCGCCACCGCCACCGGCCGGAGGCAACCGCGCAGCCGCTGACTCCTGACGACATTCTGCACAAAAAATACG ACAACTGTAGTAAGTCTGAGAGCAAGGGTGGCACCAGTTGATTGCCGTCAATCTGAAGATATGTATATAAGGCTCTGATGCAATTGAGTTGAGAGGCTGGATCATGATGGCTACCTAATCATTAAGGGGAATTTAAGATCATCCCTTTTACTGACGTCTAAATTCGGTAGGCAGTGTAGATCGATCAGCGGTTAAGAGTTAACAAGTCGTGAATTCTTTTTTGCTATGTATGTAGTACTATTTTTTCCCCTTTGGGGAGACATTGGTTATGTATCAGTTGTTGATGTACCTGTTCAAATTTATGCCAACCAGAGCAAATTGTATTATCATCCGCCTCAACTGTGTCATGTCATGTTAATTTAGCTGCATCTACCAAAGTACAAAGTCTTAATTAACCAAAAAAGGA]
[-] EMBL CB664233 [ GGCGGAATGGCGCCGCCGGCGGTGATGTTCCCGGCGGCCGGCGTGCACCAGTACATGCAGCGGATGGGCGCCGTCGGGATGGGCCCACCACACATGGCGTCCCTGCCGAGGATGCCGCCGTTCATGGCGCCGCCGCCCGCCGCCGTGCAGAGCTCGCCGGTGGTCAGCATGGCCGACCCCTACGCCCGCTGCCTCGCCGTCGACCACCTCCAGCCACCGCCTCCGAT GCATTACCTGCAGGGGATGAGCTTCTACCAGCTCGCCGCGGCCAAGAACCTTCAGCAGCAGCAGAACACGGCGGAGGCGCCGCCACCGCCACCGGCCGGAGGCAACCGCGCAGCCGCTGACTCCTGACGACATTCTGCACAAAAAATACG ACAACTGTAGTAAGTCTGAGAGCAAGGGTGGCACCAGTTGATTGCCGTCAATCTGAAGATATGTATATAAGGCTCTGATGCAATTGAGTTGAGAGGCTGGATCATGATGGCTACCTAATCATTAAGGGGAATTTAAGATCATCCCTTTTACTGACGTCTAAATTCGGTAGGCAGTGTAGATCGATCAGCGGTTAAGAGTTAACAAGTCGTGAATTCTTTTTTGCTATGTATGTAGTACTATTTTTTCCCCTTTGGGGAGACATTGGTTATGTATCAGTTGTTGATGTACCTGTTCAAATTTATGCCAACCAGAGCA ]
consensusID : consensus_14139#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 833 fasta sequence
[ATGAATTATGAAATTTCGGAACGAAATACCTGAGAATTCGGGGGTATTGATCCTCCAGTAGTACTATATGTTGGAAAAGAAAAATCAGACAGAATAAATATATGCATTTTTTCGCTTGAAATTTTATTTGAAATTGCCCTGTAAAATGAGCCAGAAAAGTCTAAGGAATTTAAAGATGAATAAAATCTGAGGGTGTGAACACAGGTTTGCTTTCAGCAAAGACAATGTGATCTGGTTAGCTCAAGAACCTGTCATTGTCATGCACTGTAGGCTAGAGTTTACTTTGCTGATTTCACTCGGCTACATGCACTGCATCCATCGGTGTCAAATTCACGGACTAGTTGATCATTTATCTCTTGTAGATCCGTGGATAGCTGCATCACAGAAACTCTGAATTTCTCTGTTCTTAAATGCAACTGTTTGTTCATCTCTGACTTGACTTATCACTCACATATCTGTCTCTTTTTTGTCCCTGAAATATTGCAGACAACTGTAGTAAGTCTGAGAGCAAGGGTGGCACCAGTTGATTGCCGTCAATCTGAAGATATGTATATAAGGCTCTGATGCAATTGAGTTGAGAGGCTGGATCATGATGGCTACCTAATCATTAAGGGGAATTTAAGATCATCCCTTTTACTGACGTCTAAATTCGGTAGGCAGTGTAGATCGATCAGCGGTTAAGAGTTAACAAGTCGTGAATTCTTTTTTGCTATGTATGTAGTACTATTTTTTCCCCTTTGGGGAGACATTGGTTATGTATCAGTTGTTGATGTA-CCTGTTCAAATTTAT-GCCAACCAGAGCAAATTGTATTATCATCCGCCTCAAAAAAAAGA]
[-] EMBL CB681378 [ATGAATTATGAAATTTCGGAACGAAATACCTGAGAATTCGGGGGTATTGATCCTCCAGTAGTACTATATGTTGGAAAAGAAAAATCAGACAGAATAAATATATGCATTTTTTCGCTTGAAATTTTATTTGAAATTGCCCTGTAAAATGAGCCAGAAAAGTCTAAGGAATTTAAAGATGAATAAAATCTGAGGGTGTGAACACAGGTTTGCTTTCAGCAAAGACAATGTGATCTGGTTAGCTCAAGAACCTGTCATTGTCATGCACTGTAGGCTAGAGTTTACTTTGCTGATTTCACTCGGCTACATGCACTGCATCCATCGGTGTCAAATTCACGGACTAGTTGATCATTTATCTCTTGTAGATCCGTGGATAGCTGCATCACAGAAACTCTGAATTTCTCTGTTCTTAAATGCAACTGTTTGTTCATCTCTGACTTGACTTATCACTCACATATCTGTCTCTTTTTTGTCCCTGAAATATTGCAGACAACTGTAGTAAGTCTGAGAGCAAGGGTGGCACCAGTTGATTGCCGTCAATCTGAAGATATGTATATAAGGCTCTGATGCAATTGAGTTGAGAGGCTGGATCATGATGGCTACCTAATCATTAAGGGGAATTTAAGATCATCCCTTTTACTGACGTCTAAATTCGGTAGGCAGTGTAGATCGATCAGCGGTTAAGAGTTAACAAGTCGTGAATTCTTTTTTGCTATGTATGTAGTACTATTTTTTCCCCTTTGGGGAGACATTGGTTATGTATCAGTTGTTGATGTAGCCTGTTCAAATTTAT GCCAACCAGAGCAAAT ]
[-] EMBL CB620674 [ TATGTTGGAAAAGAAAAATCAGACAGAATAAATATATGCATTTTTTGGCTTGAAATTTTATTTGAAATTGCCCTGTAAAATGAGCCAGAAAAGTCTAAGGAATTTAAAGATGAATAAAATCTGAGGGTGTGAACACAGGTTTGCTTTCAGCAAAGACAATGTGATCTGGTTAGCTCAAGAACCTGTCATTGTCATGCACTGTAGGCTAGAGTTTACTTTGCTGATTTCACTCGGCTACATGCACTGCATCCATCGGTGTCAAATTCACGGACTAGTTGATCATTTATCTCTTGTAGATCCGTGGATAGCTGCATCACAGAAACTCTGAATTTCTCTGTTCTTAAATGCAACTGTTTGTTCATCTCTGACTTGACTTATCACTCACATATCTGTCTCTTTTTTGTCCCTGAAATATTGCAGACAACTGTAGTAAGTCTGAGAGCAAGGGTGGCACCAGTTGATTGCCGTCAATCTGAAGATATGTATATAAGGCTCTGATGCAATTGAGTTGAGAGGCTGGATCATGATGGCTACCTAATCATTAAGGGGAATTTAAGATCATCCCTTTTACTGACGTCTAAATTCGGTAGGCAGTGTAGATCGATCAGCGGTTAAGAGTTAACAAGTCGTGAATTCTTTTTTGCTATGTATGTAGTACTATTTTTTCCCCTTTGGGGAGACATTGGTTATGTATCAGTTGTTGATGTA CCTGTTCAAATTTAT ACGAACCAGAGCAAATTGTATTATCATCCGCCTCAAAAAAAAGA]
[+] EMBL BM038034 [ CCATCGGTGTCAAATTCACGGACTA TTGATCATTTATCTCTTGTAGATCCGTGGATA CTNCATCACAGAAACTCTGAATTTCTCTGTTCTTAAAT CAACTGTTTGTTCATCTCTGACTTGACTTATCACTCACATATCTGTCTCTTTTTTGTCCCTGAAATATT CAGACCACTGTAGTAAGTCTGAGAGCAAGGGTGGCACCAGTTGATT CCGTCAATCTGAAGATATGTATATAAGGCTCTGATGCCATTGAGTTGAGAGGCTGGATCATGATGGCTACCTAATCATTAAGGGGAATTTAAGATCATCCCTTTTACTGACGTCTAAATTCGGTA GCAGTGTAGATCGATCA CGGTTAAGAGTTAAC AGTCGTGAATTCTTTTTTGCTATGTATGTAGTACTATTTTTTCCCCTTTGGGGAGAC TTGGTTATGTATCAGTTGTTGATGTA CCTG TCCAATTTATCCCCCACC GA CAATTTGTATTATCAaaa ]
consensusID : consensus_14139#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 793 fasta sequence
[AGCATCGATGCTGGATGAAGCGATCGAGTATCTCAAGTCACTGCAGCTCCAGCTACAGATGATGTGGATGGGCGGCGGAATGGCGCCGCCGGCGGTGATGTTCCCGGCGGCCGGCGTGCACCAGTACATGCAGCGGATGGGCGCCGTCGGGATGGGCCCACCACACATGGCGTCCCTGCCGAGGATGCCGCCGTTCATGGCGCCGCCGCCCGCCGCCGTGCAGAGCTCGCCGGTGGTCAGCATGGCCGACCCCTACGCCCGCTGCCTCGCCGTCGACCACCTCCAGCCACCGCCTCGGATGCATTACCTGCAGGGGATGAGTTTTTACCAGCTCGCCGCGGCCAAGAACCTTCAGCAGCAGCAGAACTCGGCGGAGGCGCCGCCACCGCCACCGGCCGGAGGCAACCGCGCAGCCGCTGACTCCTGATGACATTTTGCACAAAAAATACGACAACTGTAGTAAGTCTGAGAGCAAGGGTGGCACCAGTTGATTGCCGTCAATCTGAAGATATGTATATAAGGCTCTGATGCAATTGAGTTGAGAGGCTGGATCATGATGGCTACCTAATCATTAAGGGGAATTTAAGATCATCCCTTTTACTGACGTCTAAATTCGGTAGGCAGTGTAGATCGATCAGCGGTTAAGAGTTAACAAGTCGTGAATTCTTTTTTGCTATGTATGTAGTACTATTTTTTCCCCTTTGGGGAGACATTGGTTATGTATCAGTTGTTGATGTACCTGTTCAAATTTATGCCAACCAGAGCAAATTGTATT---A--AAAAAAAAAAGGGAAAN]
[-] EMBL CB669231 [AGCATCGATGCTGGATGAAGCGATCGAGTATCTCAAGTCACTGCAGCTCCAGCTACAGATGATGTGGATGGGCGGCGGAATGGCGCCGCCGGCGGTGATGTTCCCGGCGGCCGGCGTGCACCAGTACATGCAGCGGATGGGCGCCGTCGGGATGGGCCCACCACACATGGCGTCCCTGCCGAGGATGCCGCCGTTCATGGCGCCGCCGCCCGCCGCCGTGCAGAGCTCGCCGGTGGTCAGCATGGCCGACCCCTACGCCCGCTGCCTCGCCGTCGACCACCTCCAGCCACCGCCTCGGATGCATTACCTGCAGGGGATGAGTTTTTACCAGCTCGCCGCGGCCAAGAACCTTCAGCAGCAGCAGAACTCGGCGGAGGCGCCGCCACCGCCACCGGCCGGAGGCAACCGCGCAGCCGCTGACTCCTGATGACATTTTGCACAAAAAATACGACAACTGTAGTAAGTCTGAGAGCAAGGGTGGCACCAGTTGATTGCCGTCAATCTGAAGATATGTATATAAGGCTCTGATGCAATTGAGTTGAGAGGCTGGATCATGATGGCTACCTAATCATTAAGGGGAATTTAAGATCATCCCTTTTACTGACGTCTAAATTCGGTAGGCAGTGTAGATCGATCAGCGGTTAAGAGTTAACAAGTCGTGAATTCTTTTTTGCTATGTATGTAGTACTATTTTTTCCCCTTTGGGGAGACATTGGTTATGTATCAGTTGTTGATGTACCTGTTCAAATTTATGCCAACCAGAGCAAATTGTATT A AAAAAAAAAAGGG ]
[-] EMBL CB660504 [ GCGGCGGAATGGCGCCGCCGGCGGTGATGTTCCCGGCGGCCGGGGTGCACCAGTACATGCAGCGGATGGGCGCCGTCGGGATGGGCCCCCCACACATGGGGTCCCTGCCGAGGATGCCCCCGTTCATGGGGCCGCCGCCCGCCGCCGTGCAGAGCTCGCCGGTGGTCAGCATGGCCGACCCCTACGCCCGCTGCCTTGCCGTTGACCACCTCCAGCCACCGCCTTTGATGCATTACCTGCAGGGGATGAGCTTTTACCAGCTGGCCGGGGCCAAGAACCTTCAGCAGCAGCAGAACCCGGGGGAGGGGCCGCCCCCGCCACCGGCCGGAGGCAACCGGGCAGCCGGTGACTCCTGAGGACATTTTGCCCAAAAAATTCGACAACTGTAGTAAGTTTGAGAGCAAGGGTGGCCCCAGTTGATTGCCGTCAATTTGAAGATATGTATATAAGGCTTTGATGCAATTGAGTTGAGAGGCTGGATCATGATGGCTCCCTAATCATTAAGGGGAATTTAAGATCATCCCTTTTACTGACGTTTAAATTCGGTAGGCAGTGTAGATCGATCAGCGGTTAAGAGTTAACAAGTCGGGAATTTTTTTTTGCTAGGTATGTAGTACTATTTTTTCCCCTTTGGGGAGACATTGGTTAGGTATCAGTTGTTGATGTACCTGTTCAAATTTATGCCAACCAGAGCAA ]
[+] EMBL AU056076 [ AGTTANCAAGTCGTGAATTCTTTTTNGCTATGTATGTAGTACTATTTTTTCCCCTTTGGGGAGNCATTGGTTATGTATCAGTTGTTGATGTACCTGTTCAAATTTATGCCAACCAGAGCAAATTGTNTTNTCATCAAAAAAAAAAaaaaaan]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14139#0 GCGAGTCCTCTTCCTGCCCTGCCCTGCCCTGCCCTGCATTCTTTCTTTCTCCACCAGGGG 60
consensus_14139#2 ------------------------------------------------------------
consensus_14139#1 ------------------------------------------------------------
consensus_14139#0 AATCCAGTTCACCCCCAGTGCTGCTTCTGCTGCTGCTTCTGCATCATCTTGCCCTGTTAA 120
consensus_14139#2 ------------------------------------------------------------
consensus_14139#1 ------------------------------------------------------------
consensus_14139#0 AAAGACACAGTGCCCTTGTTCTTTCGCAGTTGCAACTAGCATCTCCTCCTCTACTTGTAC 180
consensus_14139#2 ------------------------------------------------------------
consensus_14139#1 ------------------------------------------------------------
consensus_14139#0 TCACTTCACACCTCAGCTCAGCTCAGCTCATCTCCTGTCATCTCAGCTCAAAGAGAAAGA 240
consensus_14139#2 ------------------------------------------------------------
consensus_14139#1 ------------------------------------------------------------
consensus_14139#0 GCTGAAGGTGTAAGCTGATCACCAGGAAGCAGAGGCTTTTTTTCAGATTACAGTTATCTG 300
consensus_14139#2 ------------------------------------------------------------
consensus_14139#1 ------------------------------------------------------------
consensus_14139#0 AAACAACCAACTTCAGAATCAATCAGCAAAGGTAGAAACAAGACAGAGCTGCTGTGCTTC 360
consensus_14139#2 ------------------------------------------------------------
consensus_14139#1 ------------------------------------------------------------
consensus_14139#0 TGTGATTAATTAGGGTTGTTAATGCCATGAACCAGTTCGTCCCTGATTGGAACACCACCA 420
consensus_14139#2 ------------------------------------------------------------
consensus_14139#1 ------------------------------------------------------------
consensus_14139#0 GCATGGGCGACGGCTTTGCGCCATTAGGCGAAGACGACGGGCTCGTCGAGCTGCTATGGT 480
consensus_14139#2 ------------------------------------------------------------
consensus_14139#1 ------------------------------------------------------------
consensus_14139#0 GCAATGGCCACGTCGTCATGCAGAGCCAGGCGCCGCGGAAGCCGCCGAGGCCGGAGAAGA 540
consensus_14139#2 ------------------------------------------------------------
consensus_14139#1 ------------------------------------------------------------
consensus_14139#0 CGACGGCGGCGGCGGCGGCGGCGATGGCGGAGGATGAGTCGGCGTCGTGGTTTCAGTACC 600
consensus_14139#2 ------------------------------------------------------------
consensus_14139#1 ------------------------------------------------------------
consensus_14139#0 CGGTCGACGACGTGCTTGAGAAGGACCTGTTCACCGAGCTGTTCGGCGAAATGACGGCGG 660
consensus_14139#2 ------------------------------------------------------------
consensus_14139#1 ------------------------------------------------------------
consensus_14139#0 CCGGCGGCGGCGGCGGCGACGTCCGCAGGGCGGCGTGCAAGGAGGAGCGCGGCGCGGTCG 720
consensus_14139#2 ------------------------------------------------------------
consensus_14139#1 ------------------------------------------------------------
consensus_14139#0 CCGCGTTCCAGAGCAGGATGATGCCGCCGCCGTGGCCGGCGAGGGGGAAGGCGGAGTTCG 780
consensus_14139#2 ------------------------------------------------------------
consensus_14139#1 ------------------------------------------------------------
consensus_14139#0 GTGACGTCGACGACGTGTGCGGCGTCTCGGAGGTCGTCATGGCGAAGATGGACGGGGCGG 840
consensus_14139#2 ------------------------------------------------------------
consensus_14139#1 ------------------------------------------------------------
consensus_14139#0 CGGCGGCGGAGACGGTCGGCGAGTCATCGATGCTGACAATCGGGTCGAGCATCTGCGGGA 900
consensus_14139#2 ------------------------------------------------------------
consensus_14139#1 ------------------------------------------------------------
consensus_14139#0 GCAACCACGTCCAGACGCCGCCGGTGGGGAACGGGAAGGCCGGCGCCGGCACCGCCGGCG 960
consensus_14139#2 ------------------------------------------------------------
consensus_14139#1 ------------------------------------------------------------
consensus_14139#0 CCGCCAGAAGGGCGCACGACACGGCGACGGTGGCGTCGTCGTCGATGAGGTCGAGGTCCT 1020
consensus_14139#2 ------------------------------------------------------------
consensus_14139#1 ------------------------------------------------------------
consensus_14139#0 GCACCGCCAAGGCCGAGCCGCGCGACGTCGCAGCCGCCGGCGTCGGCGGCAAGCGGAAGC 1080
consensus_14139#2 ------------------------------------------------------------
consensus_14139#1 ------------------------------------------------------------
consensus_14139#0 AGCGCGGCGGCGCCGCCATGGAGTCCGGGAGCCCCAGCGAGGACGTGGAGTTCGAGTCCG 1140
consensus_14139#2 ------------------------------------------------------------
consensus_14139#1 ------------------------------------------------------------
consensus_14139#0 CCGCCGCAACGTGCTCGCCGGCGCAGAAGACGACGACGGCGAAGCGGCGGCGCGCCGCCG 1200
consensus_14139#2 ------------------------------------------------------------
consensus_14139#1 ------------------------------------------------------------
consensus_14139#0 AGGTGCACAACCTCTCCGAGAGGAGGAGAAGAGATAGGATCAATGAGAAGATGAAAGCAT 1260
consensus_14139#2 ------------------------------------------------------------
consensus_14139#1 ------------------------------------------------------------
consensus_14139#0 TACAGGAGCTCATACCTCACTGCAACAAAACGGACAAAGCATCGA--TGCTGGATGAAGC 1318
consensus_14139#2 -------------------------------------AGCATCGA--TGCTGGATGAAGC 21
consensus_14139#1 ---------------------------------ATGAATTATGAAATTTCGGAACGAAAT 27
* ** * * * * * ***
consensus_14139#0 GATCGAGTATCTCAAGTCACTGCAGCTCCAGC--TAC-AGATGATGTGGATGGGC----- 1370
consensus_14139#2 GATCGAGTATCTCAAGTCACTGCAGCTCCAGC--TAC-AGATGATGTGGATGGGC----- 73
consensus_14139#1 ACCTGAGAATTCGGGGGTATTGATCCTCCAGTAGTACTATATGTTGGAAAAGAAAAATCA 87
*** ** * * ** ****** *** * *** ** * *
consensus_14139#0 GGCGGAATGG---------CGCCGCCGGCGGTGATGTTCCCGGCGGCCGGCGTGCACCA- 1420
consensus_14139#2 GGCGGAATGG---------CGCCGCCGGCGGTGATGTTCCCGGCGGCCGGCGTGCACCA- 123
consensus_14139#1 GACAGAATAAATATATGCATTTTTTCGCTTGAAATTTTATTTGAAATTGCCCTGTAAAAT 147
* * **** ** * ** ** * * * ** * *
consensus_14139#0 GTACATGCAGCGGATGGGCGCCGTCGGGATGGGCCCACCACACATGGCGTCCCTGCCGAG 1480
consensus_14139#2 GTACATGCAGCGGATGGGCGCCGTCGGGATGGGCCCACCACACATGGCGTCCCTGCCGAG 183
consensus_14139#1 GAGCCAGAAAAGTCTAAGGAATTTAAAGATGAATAAAATCTG-AGGGTGTGAACAC-AGG 205
* * * * * * * * **** * * ** ** * *
consensus_14139#0 GATGCCGCCGTTCATGGCGCCGCCGCCCGCCGCCGTGCAGAGCTCGCCGGTGGTCAGCAT 1540
consensus_14139#2 GATGCCGCCGTTCATGGCGCCGCCGCCCGCCGCCGTGCAGAGCTCGCCGGTGGTCAGCAT 243
consensus_14139#1 TTTGCTTTCAGCAAAGACAATGTGATCTGGTTAGCTCAAGAACCTGTCATTGTCATGCAC 265
*** * * * * * * * * *** * * * ** ***
consensus_14139#0 GGCCGACCCCTACGCCCGCTGCC--TCGCCGTCGACCACCTCCAGCCACCGCCTCCGATG 1598
consensus_14139#2 GGCCGACCCCTACGCCCGCTGCC--TCGCCGTCGACCACCTCCAGCCACCGCCTCGGATG 301
consensus_14139#1 TGTAGGCTAGAGTTTACTTTGCTGATTTCACTCGGCTACATGCA-CTGCATCCATCGGTG 324
* * * * *** * * *** * ** * ** * * ** * **
consensus_14139#0 CATTACCTGCAGG--GGATGAGCTTCTACCAGCTCG----CCGCGGCCAAGAACCTT-CA 1651
consensus_14139#2 CATTACCTGCAGG--GGATGAGTTTTTACCAGCTCG----CCGCGGCCAAGAACCTT-CA 354
consensus_14139#1 TCAAATTCACGGACTAGTTGATCATTTATCTCTTGTAGATCCGTGGATAGCTGCATCACA 384
* * * * *** * ** * * *** ** * * * **
consensus_14139#0 GCAGCAGCAGAACACGGCGG----AGGCGCCGCCACCGCCACCGGCCGGAGGCAACCGCG 1707
consensus_14139#2 GCAGCAGCAGAACTCGGCGG----AGGCGCCGCCACCGCCACCGGCCGGAGGCAACCGCG 410
consensus_14139#1 GAAACTCTGAATTTCTCTGTTCTTAAATGCAACTGTTTGTTCATCTCTGACTTGACTTAT 444
* * * * * * * ** * * * ** **
consensus_14139#0 CAGCCGCTGACTCCTGACGACATTCTGCACAAAAAATAC----GACAACTGTAGTAAGTC 1763
consensus_14139#2 CAGCCGCTGACTCCTGATGACATTTTGCACAAAAAATAC----GACAACTGTAGTAAGTC 466
consensus_14139#1 CACTCAC--ATATCTGTCTCTTTTTTGTCCCTGAAATATTGCAGACAACTGTAGTAAGTC 502
** * * * *** ** ** * ***** *****************
consensus_14139#0 TGAGAGCAAGGGTGGCACCAGTTGATTGCCGTCAATCTGAAGATATGTATATAAGGCTCT 1823
consensus_14139#2 TGAGAGCAAGGGTGGCACCAGTTGATTGCCGTCAATCTGAAGATATGTATATAAGGCTCT 526
consensus_14139#1 TGAGAGCAAGGGTGGCACCAGTTGATTGCCGTCAATCTGAAGATATGTATATAAGGCTCT 562
************************************************************
consensus_14139#0 GATGCAATTGAGTTGAGAGGCTGGATCATGATGGCTACCTAATCATTAAGGGGAATTTAA 1883
consensus_14139#2 GATGCAATTGAGTTGAGAGGCTGGATCATGATGGCTACCTAATCATTAAGGGGAATTTAA 586
consensus_14139#1 GATGCAATTGAGTTGAGAGGCTGGATCATGATGGCTACCTAATCATTAAGGGGAATTTAA 622
************************************************************
consensus_14139#0 GATCATCCCTTTTACTGACGTCTAAATTCGGTAGGCAGTGTAGATCGATCAGCGGTTAAG 1943
consensus_14139#2 GATCATCCCTTTTACTGACGTCTAAATTCGGTAGGCAGTGTAGATCGATCAGCGGTTAAG 646
consensus_14139#1 GATCATCCCTTTTACTGACGTCTAAATTCGGTAGGCAGTGTAGATCGATCAGCGGTTAAG 682
************************************************************
consensus_14139#0 AGTTAACAAGTCGTGAATTCTTTTTTGCTATGTATGTAGTACTATTTTTTCCCCTTTGGG 2003
consensus_14139#2 AGTTAACAAGTCGTGAATTCTTTTTTGCTATGTATGTAGTACTATTTTTTCCCCTTTGGG 706
consensus_14139#1 AGTTAACAAGTCGTGAATTCTTTTTTGCTATGTATGTAGTACTATTTTTTCCCCTTTGGG 742
************************************************************
consensus_14139#0 GAGACATTGGTTATGTATCAGTTGTTGATGTACCTGTTCAAATTTATGCCAACCAGAGCA 2063
consensus_14139#2 GAGACATTGGTTATGTATCAGTTGTTGATGTACCTGTTCAAATTTATGCCAACCAGAGCA 766
consensus_14139#1 GAGACATTGGTTATGTATCAGTTGTTGATGTACCTGTTCAAATTTATGCCAACCAGAGCA 802
************************************************************
consensus_14139#0 AATTGTATTATCATCCGCCTCAACTGTGTCATGTCATGTTAATTTAGCTGCATCTACCAA 2123
consensus_14139#2 AATTGTATTAAAAAAAAAAAGGGAAAN--------------------------------- 793
consensus_14139#1 AATTGTATTATCATCCGCCTCAAAAAAAAGA----------------------------- 833
********** *
consensus_14139#0 AGTACAAAGTCTTAATTAACCAAAAAAGGA 2153
consensus_14139#2 ------------------------------
consensus_14139#1 ------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||