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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1415#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 726 fasta sequence
[AGCAGCTCCTAAATTCATGGCGTTGGCCGCCGTCCTCTCCCGAGCCGCCGCGCGCCTCCTCCGCCCTCCCCTACCCCTCCGCACCCGCCATCTCTGCGCCCTCCCCTCCTCCTCCTCCCCCGCTCCGTCTGAGGCGGAGATCCTCGCCGAAATCGATCCCATCGTCGACCTCGTCAAGGACATCCTCCACTCCGCCAGATATGGAGATGGTGCATTTCTAAGTCCAGACGATCAAAAGGCTGTAGTAGAAAAGGTTCTTGTTCACCACCCCACTTCTGAAGATAAGATTGGCTGTGGGGTTGATGCTATTATGGTTGGTAAGCACCCTGATTTCAGGAAGTCAAGATGCCTCTTTATTGTTAGAACAAACGGTGAGACTGAAGATTTTTCATACCGCAAGTGTATCAAGGAGTACATCAAACAGAAGTATCCCAGCCAGGCAGACGATTTTATACAGAATCATCTCACCCGGCAATTTACTCGACGTCCCAAGTAGAAATGCCCCTTTTTTTTCGTGATAGTGTCTTTGGCTTATAGGCAAAATAGAACCCGTATGTCTCAGTTAGAACATGTAAACGAACTCGTGTTTCTTAATGTCAAGTGAAAATGTTTTGTTATCAACACATTCATGAAGATCCTTTAACCAATTATCTCTCATGTTTTCTCTGCTATTCTACTGAAGCCTGTAGGCACACGTTATATGGTCATCTTCCTTGATAATTTCAG]
[+] EMBL AK109186 [AGCAGCTCCTAAATTCATGGCGTTGGCCGCCGTCCTCTCCCGAGCCGCCGCGCGCCTCCTCCGCCCTCCCCTACCCCTCCGCACCCGCCATCTCTGCGCCCTCCCCTCCTCCTCCTCCCCCGCTCCGTCTGAGGCGGAGATCCTCGCCGAAATCGATCCCATCGTCGACCTCGTCAAGGACATCCTCCACTCCGCCAGATATGGAGATGGTGCATTTCTAAGTCCAGACGATCAAAAGGCTGTAGTAGAAAAGGTTCTTGTTCACCACCCCACTTCTGAAGATAAGATTGGCTGTGGGGTTGATGCTATTATGGTTGGTAAGCACCCTGATTTCAGGAAGTCAAGATGCCTCTTTATTGTTAGAACAAACGGTGAGACTGAAGATTTTTCATACCGCAAGTGTATCAAGGAGTACATCAAACAGAAGTATCCCAGCCAGGCAGACGATTTTATACAGAATCATCTCACCCGGCAATTTACTCGACGTCCCAAGTAGAAATGCCCCTTTTTTTTCGTGATAGTGTCTTTGGCTTATAGGCAAAATAGAACCCGTATGTCTCAGTTAGAACATGTAAACGAACTCGTGTTTCTTAATGTCAAGTGAAAATGTTTTGTTATCAACACATTCATGAAGATCCTTTAACCAATTATCTCTCATGTTTTCTCTGCTATTCTACTGAAGCCTGTAGGCACACGTTATATGGTCATCTTCCTTGATAATTTCAG]
consensusID : consensus_1415#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 432 fasta sequence
[GTTGATGCTATTATGGTTGGTAAGCACCCTGATTTCAGGAAGTCAAGATGCCTCTTTATTGTTAGAACAAACGGTGAGACTGAAGATTTTTCATACCGCAAGTGTATCAAGGAGTACATCAAACAGAAGTATCCCAGCCAGGCAGACGATTTTATACAGAATCATCTCACCCGGCAATTTACTCGACGTCCCAAGTAGAAATGCCCCTTTTTTTTTTCGTGATAGTGTCTTTGGCTGATAGGCAAAATAGAACCCGTATGTCTCAGTTAGAACATGTAAACGAACTCGTGTTTCTTAATGTCAAGTGAAAATGTTTTGTTATCAACACATTCATGAAGATCCTTTAACCAATTATCTCTCATGTTTTCTCTGCTTNNNAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]
[+] EMBL BE040540 [GTTGATGCTATTATGGTTGGTAAGCACCCTGATTTCAGGAAGTCAAGATGCCTCTTTATTGTTAGAACAAACGGTGAGACTGAAGATTTTTCATACCGCAAGTGTATCAAGGAGTACATCAAACAGAAGTATCCCAGCCAGGCAGACGATTTTATACAGAATCATCTCACCCGGCAATTTACTCGACGTCCCAAGTAGAAATGCCCCTTTTTTTTTTCGTGATAGTGTCTTTGGCTGATAGGCAAAATAGAACCCGTATGTCTCAGTTAGAACATGTAAACGAACTCGTGTTTCTTAATGTCAAGTGAAAATGTTTTGTTATCAACACATTCATGAAGATCCTTTAACCAATTATCTCTCATGTTTTCTCTGCTTNNNAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1415#0 AGCAGCTCCTAAATTCATGGCGTTGGCCGCCGTCCTCTCCCGAGCCGCCGCGCGCCTCCT 60
consensus_1415#1 ------------------------------------------------------------
consensus_1415#0 CCGCCCTCCCCTACCCCTCCGCACCCGCCATCTCTGCGCCCTCCCCTCCTCCTCCTCCCC 120
consensus_1415#1 ------------------------------------------------------------
consensus_1415#0 CGCTCCGTCTGAGGCGGAGATCCTCGCCGAAATCGATCCCATCGTCGACCTCGTCAAGGA 180
consensus_1415#1 ------------------------------------------------------------
consensus_1415#0 CATCCTCCACTCCGCCAGATATGGAGATGGTGCATTTCTAAGTCCAGACGATCAAAAGGC 240
consensus_1415#1 ------------------------------------------------------------
consensus_1415#0 TGTAGTAGAAAAGGTTCTTGTTCACCACCCCACTTCTGAAGATAAGATTGGCTGTGGGGT 300
consensus_1415#1 ----------------------------------------------------------GT 2
**
consensus_1415#0 TGATGCTATTATGGTTGGTAAGCACCCTGATTTCAGGAAGTCAAGATGCCTCTTTATTGT 360
consensus_1415#1 TGATGCTATTATGGTTGGTAAGCACCCTGATTTCAGGAAGTCAAGATGCCTCTTTATTGT 62
************************************************************
consensus_1415#0 TAGAACAAACGGTGAGACTGAAGATTTTTCATACCGCAAGTGTATCAAGGAGTACATCAA 420
consensus_1415#1 TAGAACAAACGGTGAGACTGAAGATTTTTCATACCGCAAGTGTATCAAGGAGTACATCAA 122
************************************************************
consensus_1415#0 ACAGAAGTATCCCAGCCAGGCAGACGATTTTATACAGAATCATCTCACCCGGCAATTTAC 480
consensus_1415#1 ACAGAAGTATCCCAGCCAGGCAGACGATTTTATACAGAATCATCTCACCCGGCAATTTAC 182
************************************************************
consensus_1415#0 TCGACGTCCCAAGTAGAAATGCCCCTTTTTTTT--CGTGATAGTGTCTTTGGCTTATAGG 538
consensus_1415#1 TCGACGTCCCAAGTAGAAATGCCCCTTTTTTTTTTCGTGATAGTGTCTTTGGCTGATAGG 242
********************************* ******************* *****
consensus_1415#0 CAAAATAGAACCCGTATGTCTCAGTTAGAACATGTAAACGAACTCGTGTTTCTTAATGTC 598
consensus_1415#1 CAAAATAGAACCCGTATGTCTCAGTTAGAACATGTAAACGAACTCGTGTTTCTTAATGTC 302
************************************************************
consensus_1415#0 AAGTGAAAATGTTTTGTTATCAACACATTCATGAAGATCCTTTAACCAATTATCTCTCAT 658
consensus_1415#1 AAGTGAAAATGTTTTGTTATCAACACATTCATGAAGATCCTTTAACCAATTATCTCTCAT 362
************************************************************
consensus_1415#0 GTTTTCTCTGCTATTCTACTGAAGCCTGTAGGCACACGTTATATGGTCATCTTCCTTGAT 718
consensus_1415#1 GTTTTCTCTGCTTNNNAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 422
************ * *
consensus_1415#0 AATTTCAG-- 726
consensus_1415#1 NNNNNNNNNN 432
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||