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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14155#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1569 fasta sequence
[TAGCCACTCGCTGCGCCTCCTCCTCATCGCCTCGCCGTCGCCGGAGAAGACAACCATGACCACCATCGCCGCGCGGATGCCGTTTGCGGGCCCACGCCTCAGGCCTCCCTGCAACCTCACCGCCTCGAGGCCGGGTCCCAGGAGGGCCGGGCTGGCCGTCGTCTCCGCCGCCGCCGGTGGCCCGCTTCCCACCGTGCTCGTCACCGGCGCAGGCGGCCGAACAGGCCAGATTGTGTACAAGAAGCTCAAGGAGAGGGCAGACCAATTTGTGGGGAGAGGGCTAGTCAGGACTGAAGAGAGCAAAGCCAAGATTGGGGGCGCTGCCGACGTGTTCGTCGGGGACATAAGAGATCCCGCGAGCATTGCTCCTGCCATTGACGGCATCGACGCGCTTATCATCCTCACCAGTGCGGTTCCGAAAATGAAGCCTGGGTTTGATCCCAGCAAGGGGGGACGCCCAGAGTTCTACTTTGAGGATGGCTCTTATCCTGAGCAGGTGGATTGGATTGGCCAGAGGAATCAAATAGATGCTGCCAAGAGCATTGGTGTAAAACAGGTGGTTTTGGTTGGATCCATGGGCGGCACAGATGTCAATCACCCACTAAATAAGTTAGGAAATGCAAATATACTGGTTTGGAAGAGGAAGGCGGAGCAGTACCTAGCAGACTCAGGTCTACCATATACAATTATAAGGGCTGGAGGATTACAGGATAAAGATGGTGGTGTGCGGGAGTTGCTTGTTGGGAAGGATGATGAGATCTTGAAGACAGAAACAAAAACTATTACCAGAGCAGATGTTGCAGAAGTTTGTTTACAGGCCTTGCTATTTGAGGAGGCAAGGTTTAAGGCATTTGATCTGGCATCAAAACCTGAAGGTGAAGGAGTACCTACAACTGATTTCAGGGCTCTTTTTTCGCAAGTTAATAGTCGCTTCTAAGAAGTATAATCTGTCAACGAGGCACAATATTTGTGATGGAATAATATGAAGTGTGTATTGAGTGAGGAGGCTCCTGATGGAAGAGCTCAAGAACATTGTTGTCTGCTAATTATGGAAAACAGGCAAGTAGTTAAAGTAGACAAACGCGCACCTTACTTATCAGCAGTTCCAATTCAGCAACAACATCATATATAGGTTCCTTGAGACACAGAAGTGAAGGAAGAGGGGCATGGGCCATGTTCATTTCAGATTATATAGAGATCATGTTGTCCCCATGAAATGAAGGGTTCAGATTGCTCCACCGTTTTTTGGGGGGATATTCTTGATGCAATATAAAAAAAGGCGAATATTAGGGATGGCTTGATGATCTAAGGCTCCCGTACATGTTTTTTGCGAGAAAGTAGCTAGCGAGCCCAGCTAGAAACAATCCTTCTTCTTAAGATAATGAGCTAGGAACATCCTTTTATTTGTCCATCTGTAGTTAACTACAATGCCTTGGCATCAAGAATCTCCAATCAAGAACACGTTCACACTATATTGTGTCTAGCAGCAGCTAGCATCATTATCCTAAAAAAATTTAGCTACATACATAAACATTTAAAAGAGTAAAGTGTATTGCTGGCACTTAAATT]
[+] EMBL AK071038 [TAGCCACTCGCTGCGCCTCCTCCTCATCGCCTCGCCGTCGCCGGAGAAGACAACCATGACCACCATCGCCGCGCGGATGCCGTTTGCGGGCCCACGCCTCAGGCCTCCCTGCAACCTCACCGCCTCGAGGCCGGGTCCCAGGAGGGCCGGGCTGGCCGTCGTCTCCGCCGCCGCCGGTGGCCCGCTTCCCACCGTGCTCGTCACCGGCGCAGGCGGCCGAACAGGCCAGATTGTGTACAAGAAGCTCAAGGAGAGGGCAGACCAATTTGTGGGGAGAGGGCTAGTCAGGACTGAAGAGAGCAAAGCCAAGATTGGGGGCGCTGCCGACGTGTTCGTCGGGGACATAAGAGATCCCGCGAGCATTGCTCCTGCCATTGACGGCATCGACGCGCTTATCATCCTCACCAGTGCGGTTCCGAAAATGAAGCCTGGGTTTGATCCCAGCAAGGGGGGACGCCCAGAGTTCTACTTTGAGGATGGCTCTTATCCTGAGCAGGTGGATTGGATTGGCCAGAGGAATCAAATAGATGCTGCCAAGAGCATTGGTGTAAAACAGGTGGTTTTGGTTGGATCCATGGGCGGCACAGATGTCAATCACCCACTAAATAAGTTAGGAAATGCAAATATACTGGTTTGGAAGAGGAAGGCGGAGCAGTACCTAGCAGACTCAGGTCTACCATATACAATTATAAGGGCTGGAGGATTACAGGATAAAGATGGTGGTGTGCGGGAGTTGCTTGTTGGGAAGGATGATGAGATCTTGAAGACAGAAACAAAAACTATTACCAGAGCAGATGTTGCAGAAGTTTGTTTACAGGCCTTGCTATTTGAGGAGGCAAGGTTTAAGGCATTTGATCTGGCATCAAAACCTGAAGGTGAAGGAGTACCTACAACTGATTTCAGGGCTCTTTTTTCGCAAGTTAATAGTCGCTTCTAAGAAGTATAATCTGTCAACGAGGCACAATATTTGTGATGGAATAATATGAAGTGTGTATTGAGTGAGGAGGCTCCTGATGGAAGAGCTCAAGAACATTGTTGTCTGCTAATTATGGAAAACAGGCAAGTAGTTAAAGTAGACAAACGCGCACCTTACTTATCAGCAGTTCCAATTCAGCAACAACATCATATATAGGTTCCTTGAGACACAGAAGTGAAGGAAGAGGGGCATGGGCCATGTTCATTTCAGATTATATAGAGATCATGTTGTCCCCATGAAATGAAGGGTTCAGATTGCTCCACCGTTTTTTGGGGGGATATTCTTGATGCAATATAAAAAAAGGCGAATATTAGGGATGGCTTGATGATCTAAGGCTCCCGTACATGTTTTTTGCGAGAAAGTAGCTAGCGAGCCCAGCTAGAAACAATCCTTCTTCTTAAGATAATGAGCTAGGAACATCCTTTTATTTGTCCATCTGTAGTTAACTACAATGCCTTGGCATCAAGAATCTCCAATCAAGAACACGTTCACACTATATTGTGTCTAGCAGCAGCTAGCATCATTATCCTAAAAAAATTTAGCTACATACATAAACATTTAAAAGAGTAAAGTGTATTGCTGGCACTTAAATT]
[-] EMBL CB619627 [ GATTTTGAAGACAGAAACAAAAATTATTGCCAGAGCAGATGTTGCAGAAGTTTTTTTACAGGCCTTGCTATTTGAGGAGGCAAGGTTTAAGGCATTTGATCTGGCATCAAAACCTGAAGGTGAAGGAGTACCTACAACTGATTTCAGGGCTCTTTTTTCGCAAGTTAATAGTCGCTTCTAAGAAGTATAATCTGTCAACGAGGCACAATATTTGTGATGGAATAATATGAAGTGTGTATTGAGTGAGGAGGCTCCTGATGGAAGAGCTCAAGAACATTGTTGTCTGCTAATTATGGAAAACAGGCAAGTAGTTAAAGTAGACAAACACGCACCTTACTTATCAGCAGTTCCAATTCAGCAACAACATCATATATAGGTTCCTTGAGACACAGAAGTGAAGGAAGAGGGGCATGGGCCATGTTCATTTCAGATTATATAGAGATCATGTTGTCCCCATGAAATGAAGGGTTCAGATTGCTCCACCGAATTTTGGGGGGATATTCTTGATGCAATATAAAAAAAGGCGAATATTAGGGATGGCTTGATGATCTAAGGCTCCCGTACATGTTTTTTGCGAGAAAGTAGCTGGCGAGCCCAGCTAGAAACAATCCTTCTTCTTAAGATAATGAGCTAGGAACATCCTTTTATTTGTCCATCTGTAGTTAACTACAATGCCTTGGCATCAAGAATCTCCAATCAAGAAGGGGTTCACACTATAATGTGTCTAGCAGCAGCTAGCATCATTATCCTAAAAAAAATTAGCTACATCCTTAAAggggtaaa ]
consensusID : consensus_14155#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1371 fasta sequence
[TCCTCCTCATCGCCTC---GCCGTCGCCGGAGAAGACAACCATGACCACCATCGCCGCGCGGATGCCGTTTGCGGGCCCACGCCTCAGGCCTCCCTGCAACCTCACCGCCTCGAGGCCGGGTCCCAGGAGGGCCGGGCTGGCCGTCGTCTCCGCCGCCGCCGGTGGCCCGCTTCCCACCGTGCTCGTCACCGGCGCAGGCGGCCGAACAGGCCAGATTGTGTACAAGAAGCTCAAGGAGAGGGCAGACCAATTTGTGGGGAGAGGGCTAGTCAGGACTGAAGAGAGCAAAGCCAAGATTGGGGGCGCTGCCGACGTGTTCGTCGGGGACATAAGAGATCCCGCGAGCATTGCTCCTGCCATTGACGGCATCGACGCGCTTATCATCCTCACCAGTGCGGTTCCGAAAATGAAGCCTGGGTTTGATCCCAGCAAGGGGGGACGCCCAGAGTTCTACTTTGAGGATGGCTCTTATCCTGAGCAGGTGGATTGGATTGGCCAGAGGAATCAAATAGATGCTGCCAAGAGCATTGGTGTAAAACAGGTGGTTTTGGTTGGATCCATGGGCGGCACAGATGTCAATCACCCACTAAATAAGTTAGGAAATGCAAATATACTGGTTTGGAAGAGGAAGGCGGAGCAGTACCTAGCAGACTCAGGTCTACCATATACAATTATAAGGGCTGGAGGATTACAGGATAAAGATGGTGGTGTGCGGGAGTTGCTTGTTGGGAAGGATGATGAGATCTTGAAGACAGAAACAAAAACTATTACCAGAGCAGATGTTGCAGAAGTTTGTTTACAGGCCTTGCTATTTGAGGAGGCAAGGTTTAAGGCATTTGATCTGGCATC-AAAACCTGAAGGTGAAGGAGTACCTACAACTGATTTCAGGGCTCTTTTTTCGCAAGTTAATAGTCGCTTCTAAGAAGTATAATCTGTCAACGAGGCAC-AATATTTGTGATGGAATAATATGAAGTGTGTATTGAGTGAGGAGGCTCCTGATGGAAGAGCTCAAGAACATTGTTGTCTGCTAATTATGGAAAACAGGCAAGTAGTTAAAGTAGACAAACACGCACCTTACTTATCAGCAGTTCCAATTCAGCAACAACATCATATATAGGTTCCTTGAGACACAGAAGTGAAGGAAGAGGGGCATGGGCCATGTTCATTTCAGATTATATAGAGATCATGTTGTCCCCATGAAATGAAGGTGGTTTTCCAATTTCGGTAGCTAATGTTTGGTAGTGAGACCAGTGTCGATGTAAACTAAAATCTTTGTATGTATCTTTCTTTCAGGGTTCAGATTGCTCCACCGTTTTTTGGGGGGATATTCTTGATGCAATATAAAAAAAGGCGAATATTAGGGAAAAAAAAAA]
[+] EMBL AK067116 [TCCTCCTCATCGCCTC GCCGTCGCCGGAGAAGACAACCATGACCACCATCGCCGCGCGGATGCCGTTTGCGGGCCCACGCCTCAGGCCTCCCTGCAACCTCACCGCCTCGAGGCCGGGTCCCAGGAGGGCCGGGCTGGCCGTCGTCTCCGCCGCCGCCGGTGGCCCGCTTCCCACCGTGCTCGTCACCGGCGCAGGCGGCCGAACAGGCCAGATTGTGTACAAGAAGCTCAAGGAGAGGGCAGACCAATTTGTGGGGAGAGGGCTAGTCAGGACTGAAGAGAGCAAAGCCAAGATTGGGGGCGCTGCCGACGTGTTCGTCGGGGACATAAGAGATCCCGCGAGCATTGCTCCTGCCATTGACGGCATCGACGCGCTTATCATCCTCACCAGTGCGGTTCCGAAAATGAAGCCTGGGTTTGATCCCAGCAAGGGGGGACGCCCAGAGTTCTACTTTGAGGATGGCTCTTATCCTGAGCAGGTGGATTGGATTGGCCAGAGGAATCAAATAGATGCTGCCAAGAGCATTGGTGTAAAACAGGTGGTTTTGGTTGGATCCATGGGCGGCACAGATGTCAATCACCCACTAAATAAGTTAGGAAATGCAAATATACTGGTTTGGAAGAGGAAGGCGGAGCAGTACCTAGCAGACTCAGGTCTACCATATACAATTATAAGGGCTGGAGGATTACAGGATAAAGATGGTGGTGTGCGGGAGTTGCTTGTTGGGAAGGATGATGAGATCTTGAAGACAGAAACAAAAACTATTACCAGAGCAGATGTTGCAGAAGTTTGTTTACAGGCCTTGCTATTTGAGGAGGCAAGGTTTAAGGCATTTGATCTGGCATC AAAACCTGAAGGTGAAGGAGTACCTACAACTGATTTCAGGGCTCTTTTTTCGCAAGTTAATAGTCGCTTCTAAGAAGTATAATCTGTCAACGAGGCAC AATATTTGTGATGGAATAATATGAAGTGTGTATTGAGTGAGGAGGCTCCTGATGGAAGAGCTCAAGAACATTGTTGTCTGCTAATTATGGAAAACAGGCAAGTAGTTAAAGTAGACAAACACGCACCTTACTTATCAGCAGTTCCAATTCAGCAACAACATCATATATAGGTTCCTTGAGACACAGAAGTGAAGGAAGAGGGGCATGGGCCATGTTCATTTCAGATTATATAGAGATCATGTTGTCCCCATGAAATGAAGGTGGTTTTCCAATTTCGGTAGCTAATGTTTGGTAGTGAGACCAGTGTCGATGTAAACTAAAATCTTTGTATGTATCTTTCTTTCAGGGTTCAGATTGCTCCACCGTTTTTTGGGGGGATATTCTTGATGCAATATAAAAAAAGGCGAATATTAGGGA ]
[+] EMBL CB619626 [ CTCCTCCCTTCAAAGCCGTCGCCGGAGAAGACAACCATGACCACCATCGCCGCGCGGATGCCGTTTGCGGGCCCACGCCTCAGGCCTCCCTGCAACCTCACCGCCTCGAGGCCGGGTCCCAGGAGGGCCGGGCTGGCCGTCGTCTCCGCCGCCGCCGGTGGCCCGCTTCCCACCGTGCTCGTCACCGGCGCAGGCGGCCGAACAGGCCAGATTGTGTACAAGAAGCTCAAGGAGAGGGCGGACCAATTTGTGGGGAGAGGGCTAGTCAGGACTGAAGAGAGCAAAGCCAAGATTGGGGGCGCCGCCGACGTGTTCGTCGGGGACATAAGAGATCCCGCGAGCATTGCTCCTGCCATTGACGGCATCGACGCGCTTATCATCCTCACCAGTGCGGTTCCGAAAATGAAGCCTGGGTTTGATCCCAGCAAGGGGGGACGCCCAGAGTTCTACTTTGAGGATGGCTCTTATCCTGAGCAGGTGGATTGGATTGGCCAGAAGAATCAAATAGATGCTGCCAAGAGCATTGGTGTAAAACAGGTGGTTTTGGTTGGATCCATGGGCGGCACAGATGTCAATCACCCACTAAATAAGTTAGGAAATGCAAATATACTGGTTTGGAAGAGGAAGGCGGAGCAGTACCTAGCAGACTCAGGTCTACCATATACAATTATAAGGGCTGGAGGATTACAGGATAAAGATGGTGGTGTGCGGGAGTTGCTTGTTGGGAAGGATGATGAGATCTTGAAGACAGAAACAAAAACTATTGCCAGAGCAGATGTTG ]
[+] EMBL OSS12936A [ CGGAGAAGACAACCATGACCACCATCGCCGCGCGGATGCCGTTTGCGGGCCCACGCCTCAGGCCTCCCTGCAACCTCACCGCCTCGAGGCCGGGTCCCAGGAGGGCCGGGCTGGCCGTCGTCTCCGCCGCCGCCGGTGGCCCGCTTCCCACCGTGCTCGTCACCGGCGCAGGCGGCCGAACAGG CAGATTGTGTACAAGAAGCTCAAGGAGAGGGCAGACCAATTTGTGGGGAGAGGGCTAGTCAGGACTGAAGAGAGCAAAGCCAAGATTGGGGGCGCTGCCGACGTGTTCGTCGGGGACATAAGAGATCCCGCGAGCA ]
[+] EMBL CB642330 [ GCGGGCCCACGCCTCAGGCCTCCCTGCAACCTCACCGCCTCGAGGCCGGGTCCCAGGAGGGCCGGGCTGGCCGTCGTCTCCGCCGCCGCCGGTGGCCCGCTTCCCACCGTGCTCGTCACCGGCGCAGGCGGCCGAACAGGCCAGATTGTGTACAAGAAGCTCAAGGAGAGGGCAGACCAATTTGTGGGGAGAGGGCTAGTCAGGACTGAAGAGAGCAAAGCCAAGATTGGGGGCGCTGCCGACGTGTTCGTCGGGGACATAAGAGATCCCGCGAGCATTGCTCCTGCCATTGACGGCATCGACGCGCTTATCATCCTCACCAGTGCGGTTCCGAAAATGAAGCCTGGGTTTGATCCCAGCAAGGGGGGACGCCCAGAGTTCTACTTTGAGGATGGCTCTTATCCTGAGCAGGTGGATTGGATTGGCCAGAGGAATCAAATAGATGCTGCCAAGAGCATTGGTGTAAAACAGGTGGTTTTGGTTGGATCCATGGGCGGCACAGATGTCAATCACCCACTAAATAAGTTAGGAAATGCAAATATACTGGTTTGGAAGAGGAAGGCGGAGCAGTACCTAGCAGACTCAGGTCTACCATATACAATTATAAGGGCTGGAGGATTACAGGATAAAGATGGTGGTGTGCGGGAGTTGCTTGTTGGGAAGGATGATGAGATCTTGAAGACAGAAACAAAAACTATTACCAGAGCAGATGTTGCAGAAGTTTGTTTACAGGCCTTGCTATTTGAGGAGGCAAGGTTTAAGGCATT ]
[+] EMBL CB642374 [ GCGGGCCCTTGCCTCAGGCCTCCCTGCAACCTCACCGCCTCGAGGCCGGGTCCCAGGAGGGCCGGGCTGGCCGTCATCTCCGCCGCCGCCGGTGGCCCGCTTCCCACCGTGCTCGTCACCGGCGCAGGCGGCCGAACAGGCCAGATTGTGTACAAGAAGCTCAAGGAGAGGGCAAACCAATTTGTGGGGAGAGGGCTAGTCAGGACTGAAGAGAGCAAAGCCAAGATTGGGGGCGCTGCCGACGTGTTCGTCGGGGACATAAGAGATCCCGCGAGCATTGCTCCTGCCATTGACGGCATCAACGCGCTTATCATCCTCACCAGTGCGGTTCCGAAAATGAAGCCTGGGTTTGATCCCAGCAAGGGGGGACGCCCAGAGTTCTACTTTGAGGATGGCTCTTATCCTGAGCAGGTGGATTGGATTGGCCACAGGAATCAAATAAATGCTGCCAAGAGCATTGGTGTAAAACAGGTGGTTTTGGATGGATCCATGGGCGGCACAGATGTCAATCACCCACTAAATAAGTTAGGAAATGCAAATATACTGGTTTGGAAGAGGAAGGCGGAGCAGTACCTAACAGACTCAAGTCTACCATATACAATTATAAGGGCTGGAGGATTACAGGATAAAGATGGTGGTGTGCGGGAGTTGCTTGTTGGGAAGGATGATGAG ]
[+] EMBL CB642212 [ GCGGGCCCACGCCTCAGGCCTCCCTGCAACCTCACCGCCTCGAGGCCGGGTCCCAGGAGGGCCGGGCTGGCCGTCGTCTCCGCCGCCGCCGGTGGCCCGCTTCCCACCGTGCTCGTCACCGGCGCAGGCGGCCGAACAGGCCAGATTGTGTACAAGAAGCTCAAGGAGAGGGCAGACCAATTTGTGGGGAGAGGGCTAGTCAGGACTGAAGAGAGCAAAGCCAAGATTGGGGGCGCTGCCGACGTGTTCGTCGGGGACATAAGAGATCCCGCGAGCATTGCTCCTGCCATTGACGGCATCGACGCGCTTATCATCCTCACCAGTGCGGTTCCGAAAATGAAGCCTGGGTTTGATCCCAGCAAGGGGGGACGCCCAGAGTTCTACTTTGAGGATGGCTCTTATCCTGAGCAGGTGGATTGGATTGGCCAGAGGAATCAAATAGATGCTGCCAAGAGCATTGGTGTAAAACAGGTGGTTTTGGTTGGATCCATGGGCGGCACAGATGTCAATCACCCACTAAATAAGTTAGGAAATGCAAATATACTGGTTTGGAAGAGGAAGGCGGAGCAGTACCTAGCAGACTCAGGTCTACCATATACAATTATAAGGGCTGGAGGATTACAGGATAAAGATGGTGGTGTGCGGGAGTTGCTTGTTGGGAAGGATGATGAGATCTTGAAGACAGAAACAAAAACTATTACCAGAGCAGATGTTGCAGAAGTTTGTTTACAGGCCTTGCTATTTGAGGAGGCAAAGTTTAAGGCATTTGATCTGGCATCAAAAACCTG AGGTGAAAGAGTACCTACA ]
[+] EMBL CB000961 [ GCCAGAGGAATCAAATAGATGCTGCCAAGAGCATTGGTGTAAAACAGGTGGTTTTGGTTGGATCCATGGGCGGCACAGATGTCAATCACCCACTAAATAAGTTAGGAAATGCAAATATACTGGTTTGGAAGAGGAAGGCGGAGCAGTACCTAGCAGACTCAGGTCTACCATATACAATTATAAGGGCTGGAGGATTACAGGATAAAGATGGTGGTGTGCGGGAGTTGCTTGTTGGGAAGGATGATGAGATCTTGAAGACAGAAACAAAAACTATTACCAGAGCAGATGTTGCAGAAGTTTGTTTACAGGCCTTGCTATTTGAGGAGGCAAGGTTTAAGGCATTTGATCTGGCATC AAAACCTGAAGGTGAAGGAGTACCTACAACTGATTTCAGGGCTCTTTTTTCGCAAGTTAATAGTCGCTTCTAAGAAGTATAATCTGTCAACGAGGCAC AATATTTGTGATGGAATAATATGAAGTGTGTATTGAGTGAGGAGGCTCCTGATGGAAGAGCTCAAGAACATTGTTGTCTGCTAATTATGGAAAACAGGCAAGT ]
[+] EMBL CB000560 [ GCCAGAGGAATCAAATAGATGCTGCCAAGAGCATTGGTGT CAACAGGTGGTTTTGGTTGGATCCATGGGCGGCACAGATGTCAATCACCCACTAAATAAGTTAGGAAATGCAAATATACTGGTTTGGAAGAGGAAGGCGGAGCAGTACCTAGCAGACTCAGGTCTACCATATACAATTATAAGGGCTGGAGGATTACAGGATAAAGATGGTGGTGTGCGGGAGTTGCTTGTTGGGAAGGATGATGAGATCTTGAAGACAGAAACAAAAACTATTACCAGAGCAGATGTTGCAGAAGTTTGTTTACAGGCCTTGCTATTTGAGGAGGCAAGGTTTAAGGCATTTGATCTGGCATC AAAACCTGAAGGTGAAGGAGTACCTACAACTGATTTCAGGGCTCTTTTTTCGCAAGTTAATAGTCGCTTCTAAGAAGTATAATCTGTCAACGAGGCAC AATATTTGTGATGGAATAATATGAAGTGTGTATTGAGTGAGGAGGCTCCTGATGGAAGAGCTCAAGAACATTGTTGTCTGCTAATTATGGAAAACAGGCAAGTAGTTAAAGTAGACAAACACGCACCTTACTTATCAGCAGTTCCCATTCAGCAACAACATCATATATAGGTTCCTTGAGACACAGAAGTGAAGGAAGAGGGGCATGGGCCATGTTCATTTCAGATTATATAG ]
[+] EMBL AU032646 [ aacCGAGGCACAAATATTTGTGATGGANTAATATGAAGTGTGTATTNAGTGAGGAGGCTCCTGATGGANGAGCTCAAGAACATTGTTGTCTGCTAATTATGGAAAACAGGCAAGTAGTTAAAGTAGACAAACACGCACCTTACTTATCAGCAGTTCCAATTCAGCAACAACATCATATATAGGTNCCTTGAGACACAGAAGTGAAGGAAGAGGGGCATGGGCCATGTTCATTTCAGATTATATAGAGATCATGTTGTCCCCATGAAATGAAGGTGGTTTTCCAATTTCGGTAGCTAATGTTTGGTAGTGAGACCAGTGTCGATGTAAACTAAAATCTTTGTATGTATCTTTCTTTCAGGGTTCAGATTGCTCCACCGTTTTTTGGGGGGATATTCTTGATGCAATATAAAAAAAGGCGAATATTAGGGAAAAAAAAAA]
consensusID : consensus_14155#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 851 fasta sequence
[AGCAGTACCTAGCAGACTCAGGTTTACCATATACAATTATAAGGGCTGGAGGATTACAGGATAAAGATGGTGGTGTGCGGGAGTTGCTTGTTGGGAAGGATGATGAGATCTTGAAGACAGAAACAAAAACTATTACCAGAGCAGATGTTGCAGAAGTTTGTTTACAGGCCTTGCTATTTGAGGAGGCAAGGTTTAAGGCATTTGATCTGGCATCAAAACCTGAAGGTGAAGGAGTACCTACAACTGATTTCAGGGCTCTTTTTTCGCAAGTTAATAGTCGCTTCTAAGAAGTATAATCTGTCAACGAGGCACAATATTTGTGATGGAATAATATGAAGTGTGTATTGAGTGAGGAGGCTCCTGATGGAAGAGCTCAAGAACATTGTTGTCTGCTAATTATGGAAAACAGAAGTGAAGGAAGAGGGGCATGGGCCATGTTCATTTCAGATTATATAGAGATCATGTTGTCCCCATGAAATGAAGGGTTCAGATTGCTCCACCGTTTTTTGGGGGGATATTCTTGATGCAATATAAAAAAAGGCGAATATTAGGGATGGCTTGATGATCTAAGGCTCCCGTACATGTTTTTTGCGAGAAAGTAGCTAGCGAGCCCAGCTAGAAACAATCCTTCTTCTTAAGATAATGAGCTAGGAACATCCTTTTATTTGTCCATCTGTAGTTAACTACAATGCCTTGGCATCAAGAATCTCCAATCAAGAACACGTTCACACTATAATGTGTCTAGCAGCAGCTAGCATCATTATCCTAAAAAAATTTAGCTACATACATAAACATTTAAAAGAGTAAAGTGTATTGCTGGCACTTAAATTTGTTCGTCTTCAAAAAAAAGA]
[-] EMBL CB642331 [AGCAGTACCTAGCAGACTCAGGTTTACCATATACAATTATAAGGGCTGGAGGATTACAGGATAAAGATGGTGGTGTGCGGGAGTTGCTTGTTGGGAAGGATGATGAGATCTTGAAGACAGAAACAAAAACTATTACCAGAGCAGATGTTGCAGAAGTTTGTTTACAGGCCTTGCTATTTGAGGAGGCAAGGTTTAAGGCATTTGATCTGGCATCAAAACCTGAAGGTGAAGGAGTACCTACAACTGATTTCAGGGCTCTTTTTTCGCAAGTTAATAGTCGCTTCTAAGAAGTATAATCTGTCAACGAGGCACAATATTTGTGATGGAATAATATGAAGTGTGTATTGAGTGAGGAGGCTCCTGATGGAAGAGCTCAAGAACATTGTTGTCTGCTAATTATGGAAAACAGAAGTGAAGGAAGAGGGGCATGGGCCATGTTCATTTCAGATTATATAGAGATCATGTTGTCCCCATGAAATGAAGGGTTCAGATTGCTCCACCGTTTTTTGGGGGGATATTCTTGATGCAATATAAAAAAAGGCGAATATTAGGGATGGCTTGATGATCTAAGGCTCCCGTACATGTTTTTTGCGAGAAAGTAGCTAGCGAGCCCAGCTAGAAACAATCCTTCTTCTTAAGATAATGAGCTAGGAACATCCTTTTATTTGTCCATCTGTAGTTAACTACAATGCCTTGGCATCAAGAATCTCCAATCAAGAACACGTTCACACTATAATGTGTCTAGCAGCAGCTAGCATCATTATCCTAAAAAAATTTAGCTACATACATAAACATTTAAAAGAGTAAAGTGTATTGCTGGCACTTAAATTTGTTCGTCTTCAAAAAAAAGA]
[-] EMBL CB642375 [ TGGTGTGCGGGAGTTGCTTGTTGGGAAGGATGATGAGATCTTGAAGACAGAAACAAAAACTATTTCCAGAGCAGATGTTGCAGAAGTTTGTTTACAGGCCTTGCTATGTGAGGAGGCAAGGTTTAAGGCATTTGATCTGGCATCAAAACCTGAAGGCGAAGGAGTACCTACAACTGATTTCAGGGCTCTTTTTTCGCAAGTTAATAGTCGCTTCTAAGAAGTATAATCTGTCAACGAGGCACAATATTTGTGATGGAATAATATGAAGCGTGTATTGAGTGAGGAGGCTCCTGATGGAAGAGCTCAAGAACATTGTTGTGTGCTAATTATGGAAAACAGAAGTGAAGGAAGAGGGGCATGGGCCATGTTCATTTCAGATTATATAGAGATCATGTTGTCCCCATGAAATGAAGGGTTCAGATTGCTCCGCCGTTTTTTGGGGGGATATTCTTGATGCAATATAAAAAAAGGCGAATATTAGGGATGGCTTGATGATCTAAGGCTCCCGTACATGTTTTTTGCGAGAAAGTAGCTAGCGAGCCCAGCTAGAAACAATCCTTCTTCTTAAGATAATGAGCTAGGAACATCCTTTTATTTGTCCATCTGTAGTTAACTACAATGCCTTGGCATCAAGAATCTCCAATCAAGAACACGTTCACACTATAATGTGTCTAGCAGCAGCTAGCATCATTATCCTAAAAAAATTTAGCTACATACATAAACATTTAAAAGAGTAAAGTGTATTGCTGGCACTTAAATTTGTTCGTCTT ]
[-] EMBL CB642213 [ TGCAGAAGTTTGTTTACAGGCCTTGCTATTTGAGGAGGCAAGGTTTAAGGCATTTGATCTGGCATCAAAACCTGAAGGTGAAGGAGTACCTACAACTGATTTCAGGGCTCTTTTTTCGCAAGTTAATAGTCGCTTCTAAGAAGTATAATCTGTCAACGAGGCACAATATTTGTGATGGAATAATATGAAGTGTGTATTGAGTGAGGAGGCTCCTGATGGAAGAGCTCAAGAACATTGTTGTCTGCTAATTATGGAAAACAGAAGTGAAGGAAGAGGGGCATGGGCCATGTTCATTTCAGATTATATAGAGATCATGTTGTCCCCATGAAATGAAGGGTTCAGATTGCTCCACCGTTTTTTGGGGGGATATTCTTGATGCAATATAAAAAAAGGCGAATATTAGGGATGGCTTGATGATCTAAGGCTCCCGTACATGTTTTTTGCGAGAAAGTAGCTAGCGAGCCCAGCTAGAAACAATCCTTCTTCTTAAGATAATGAGCTAGGAACATCCTTTTATTTGTCCATCTGTAGTTAACTACAATGCCTTGGCATCAAGAATCTCCAATCAAGAACACGTTCACACTATAAGGGGTCTAGCAGCAGCTAGCATCATTATCCTAAAAAAATTTAGCTACATACATAAACATTTAAAAGAGTTAAG GTATTCCTGGCACTTAAA ]
consensusID : consensus_14155#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 328 fasta sequence
[TTTTCGCAAGTTAATAGTCGCTTCTAAGAAGTATAATCTGTCAACGAGGCACAATATTTGTGATGGAATAATATGAAGTGTGTATTGAGTGAGGAGGCTCCTGATGGAAGAGCTCAAGAACATTGTTGTCTGCTAATTATGGAAAACAGGTTCCTTGAGACACAGAAGTGAAGGAAGAGGGGCATGGGCCATGTTCATTTCAGATTATATAGAGATCATGTTGTCCCCATGAAATGAAGGGTTCAGATTGCTCCACCGTTTTTTGGGGGGATATTCTTGATGCAATATAAAAAAAGGCGAATATTAGGGATGGCTTGATGATCTAAGG]
[-] EMBL CA305702 [TTTTCGCAAGTTAATAGTCGCTTCTAAGAAGTATAATCTGTCAACGAGGCACAATATTTGTGATGGAATAATATGAAGTGTGTATTGAGTGAGGAGGCTCCTGATGGAAGAGCTCAAGAACATTGTTGTCTGCTAATTATGGAAAACAGGTTCCTTGAGACACAGAAGTGAAGGAAGAGGGGCATGGGCCATGTTCATTTCAGATTATATAGAGATCATGTTGTCCCCATGAAATGAAGGGTTCAGATTGCTCCACCGTTTTTTGGGGGGATATTCTTGATGCAATATAAAAAAAGGCGAATATTAGGGATGGCTTGATGATCTAAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14155#1 -----------------TCCTCCTCATCGCCTCGCCGTCGCCGGAGAAGACAACCATGAC 43
consensus_14155#3 ------------------------------------------------------------
consensus_14155#0 TAGCCACTCGCTGCGCCTCCTCCTCATCGCCTCGCCGTCGCCGGAGAAGACAACCATGAC 60
consensus_14155#2 ------------------------------------------------------------
consensus_14155#1 CACCATCGCCGCGCGGATGCCGTTTGCGGGCCCACGCCTCAGGCCTCCCTGCAACCTCAC 103
consensus_14155#3 ------------------------------------------------------------
consensus_14155#0 CACCATCGCCGCGCGGATGCCGTTTGCGGGCCCACGCCTCAGGCCTCCCTGCAACCTCAC 120
consensus_14155#2 ------------------------------------------------------------
consensus_14155#1 CGCCTCGAGGCCGGGTCCCAGGAGGGCCGGGCTGGCCGTCGTCTCCGCCGCCGCCGGTGG 163
consensus_14155#3 ------------------------------------------------------------
consensus_14155#0 CGCCTCGAGGCCGGGTCCCAGGAGGGCCGGGCTGGCCGTCGTCTCCGCCGCCGCCGGTGG 180
consensus_14155#2 ------------------------------------------------------------
consensus_14155#1 CCCGCTTCCCACCGTGCTCGTCACCGGCGCAGGCGGCCGAACAGGCCAGATTGTGTACAA 223
consensus_14155#3 ------------------------------------------------------------
consensus_14155#0 CCCGCTTCCCACCGTGCTCGTCACCGGCGCAGGCGGCCGAACAGGCCAGATTGTGTACAA 240
consensus_14155#2 ------------------------------------------------------------
consensus_14155#1 GAAGCTCAAGGAGAGGGCAGACCAATTTGTGGGGAGAGGGCTAGTCAGGACTGAAGAGAG 283
consensus_14155#3 ------------------------------------------------------------
consensus_14155#0 GAAGCTCAAGGAGAGGGCAGACCAATTTGTGGGGAGAGGGCTAGTCAGGACTGAAGAGAG 300
consensus_14155#2 ------------------------------------------------------------
consensus_14155#1 CAAAGCCAAGATTGGGGGCGCTGCCGACGTGTTCGTCGGGGACATAAGAGATCCCGCGAG 343
consensus_14155#3 ------------------------------------------------------------
consensus_14155#0 CAAAGCCAAGATTGGGGGCGCTGCCGACGTGTTCGTCGGGGACATAAGAGATCCCGCGAG 360
consensus_14155#2 ------------------------------------------------------------
consensus_14155#1 CATTGCTCCTGCCATTGACGGCATCGACGCGCTTATCATCCTCACCAGTGCGGTTCCGAA 403
consensus_14155#3 ------------------------------------------------------------
consensus_14155#0 CATTGCTCCTGCCATTGACGGCATCGACGCGCTTATCATCCTCACCAGTGCGGTTCCGAA 420
consensus_14155#2 ------------------------------------------------------------
consensus_14155#1 AATGAAGCCTGGGTTTGATCCCAGCAAGGGGGGACGCCCAGAGTTCTACTTTGAGGATGG 463
consensus_14155#3 ------------------------------------------------------------
consensus_14155#0 AATGAAGCCTGGGTTTGATCCCAGCAAGGGGGGACGCCCAGAGTTCTACTTTGAGGATGG 480
consensus_14155#2 ------------------------------------------------------------
consensus_14155#1 CTCTTATCCTGAGCAGGTGGATTGGATTGGCCAGAGGAATCAAATAGATGCTGCCAAGAG 523
consensus_14155#3 ------------------------------------------------------------
consensus_14155#0 CTCTTATCCTGAGCAGGTGGATTGGATTGGCCAGAGGAATCAAATAGATGCTGCCAAGAG 540
consensus_14155#2 ------------------------------------------------------------
consensus_14155#1 CATTGGTGTAAAACAGGTGGTTTTGGTTGGATCCATGGGCGGCACAGATGTCAATCACCC 583
consensus_14155#3 ------------------------------------------------------------
consensus_14155#0 CATTGGTGTAAAACAGGTGGTTTTGGTTGGATCCATGGGCGGCACAGATGTCAATCACCC 600
consensus_14155#2 ------------------------------------------------------------
consensus_14155#1 ACTAAATAAGTTAGGAAATGCAAATATACTGGTTTGGAAGAGGAAGGCGGAGCAGTACCT 643
consensus_14155#3 ------------------------------------------------------------
consensus_14155#0 ACTAAATAAGTTAGGAAATGCAAATATACTGGTTTGGAAGAGGAAGGCGGAGCAGTACCT 660
consensus_14155#2 --------------------------------------------------AGCAGTACCT 10
consensus_14155#1 AGCAGACTCAGGTCTACCATATACAATTATAAGGGCTGGAGGATTACAGGATAAAGATGG 703
consensus_14155#3 ------------------------------------------------------------
consensus_14155#0 AGCAGACTCAGGTCTACCATATACAATTATAAGGGCTGGAGGATTACAGGATAAAGATGG 720
consensus_14155#2 AGCAGACTCAGGTTTACCATATACAATTATAAGGGCTGGAGGATTACAGGATAAAGATGG 70
consensus_14155#1 TGGTGTGCGGGAGTTGCTTGTTGGGAAGGATGATGAGATCTTGAAGACAGAAACAAAAAC 763
consensus_14155#3 ------------------------------------------------------------
consensus_14155#0 TGGTGTGCGGGAGTTGCTTGTTGGGAAGGATGATGAGATCTTGAAGACAGAAACAAAAAC 780
consensus_14155#2 TGGTGTGCGGGAGTTGCTTGTTGGGAAGGATGATGAGATCTTGAAGACAGAAACAAAAAC 130
consensus_14155#1 TATTACCAGAGCAGATGTTGCAGAAGTTTGTTTACAGGCCTTGCTATTTGAGGAGGCAAG 823
consensus_14155#3 ------------------------------------------------------------
consensus_14155#0 TATTACCAGAGCAGATGTTGCAGAAGTTTGTTTACAGGCCTTGCTATTTGAGGAGGCAAG 840
consensus_14155#2 TATTACCAGAGCAGATGTTGCAGAAGTTTGTTTACAGGCCTTGCTATTTGAGGAGGCAAG 190
consensus_14155#1 GTTTAAGGCATTTGATCTGGCATCAAAACCTGAAGGTGAAGGAGTACCTACAACTGATTT 883
consensus_14155#3 ------------------------------------------------------------
consensus_14155#0 GTTTAAGGCATTTGATCTGGCATCAAAACCTGAAGGTGAAGGAGTACCTACAACTGATTT 900
consensus_14155#2 GTTTAAGGCATTTGATCTGGCATCAAAACCTGAAGGTGAAGGAGTACCTACAACTGATTT 250
consensus_14155#1 CAGGGCTCTTTTTTCGCAAGTTAATAGTCGCTTCTAAGAAGTATAATCTGTCAACGAGGC 943
consensus_14155#3 ----------TTTTCGCAAGTTAATAGTCGCTTCTAAGAAGTATAATCTGTCAACGAGGC 50
consensus_14155#0 CAGGGCTCTTTTTTCGCAAGTTAATAGTCGCTTCTAAGAAGTATAATCTGTCAACGAGGC 960
consensus_14155#2 CAGGGCTCTTTTTTCGCAAGTTAATAGTCGCTTCTAAGAAGTATAATCTGTCAACGAGGC 310
**************************************************
consensus_14155#1 ACAATATTTGTGATGGAATAATATGAAGTGTGTATTGAGTGAGGAGGCTCCTGATGGAAG 1003
consensus_14155#3 ACAATATTTGTGATGGAATAATATGAAGTGTGTATTGAGTGAGGAGGCTCCTGATGGAAG 110
consensus_14155#0 ACAATATTTGTGATGGAATAATATGAAGTGTGTATTGAGTGAGGAGGCTCCTGATGGAAG 1020
consensus_14155#2 ACAATATTTGTGATGGAATAATATGAAGTGTGTATTGAGTGAGGAGGCTCCTGATGGAAG 370
************************************************************
consensus_14155#1 AGCTCAAGAACATTGTTGTCTGCTAATTATGGAAAACAGGCAAGTAGTTAAAGTAGACAA 1063
consensus_14155#3 AGCTCAAGAACATTGTTGTCTGCTAATTATGGAAAACAGG-------------------- 150
consensus_14155#0 AGCTCAAGAACATTGTTGTCTGCTAATTATGGAAAACAGGCAAGTAGTTAAAGTAGACAA 1080
consensus_14155#2 AGCTCAAGAACATTGTTGTCTGCTAATTATGGAAAACAG--------------------- 409
***************************************
consensus_14155#1 ACACGCACCTTACTTATCAGCAGTTCCAATTCAGCAACAACATCATATATAGGTTCCTTG 1123
consensus_14155#3 -----------------------------------------------------TTCCTTG 157
consensus_14155#0 ACGCGCACCTTACTTATCAGCAGTTCCAATTCAGCAACAACATCATATATAGGTTCCTTG 1140
consensus_14155#2 ------------------------------------------------------------
consensus_14155#1 AGACACAGAAGTGAAGGAAGAGGGGCATGGGCCATGTTCATTTCAGATTATATAGAGATC 1183
consensus_14155#3 AGACACAGAAGTGAAGGAAGAGGGGCATGGGCCATGTTCATTTCAGATTATATAGAGATC 217
consensus_14155#0 AGACACAGAAGTGAAGGAAGAGGGGCATGGGCCATGTTCATTTCAGATTATATAGAGATC 1200
consensus_14155#2 --------AAGTGAAGGAAGAGGGGCATGGGCCATGTTCATTTCAGATTATATAGAGATC 461
****************************************************
consensus_14155#1 ATGTTGTCCCCATGAAATGAAGGTGGTTTTCCAATTTCGGTAGCTAATGTTTGGTAGTGA 1243
consensus_14155#3 ATGTTGTCCCCATGAAATGAAGGG----TTCAGATTGCTCCACCGTTTTTTGGGGGGATA 273
consensus_14155#0 ATGTTGTCCCCATGAAATGAAGGG----TTCAGATTGCTCCACCGTTTTTTGGGGGGATA 1256
consensus_14155#2 ATGTTGTCCCCATGAAATGAAGGG----TTCAGATTGCTCCACCGTTTTTTGGGGGGATA 517
*********************** *** *** * * * * ** ** * *
consensus_14155#1 GACCAGTGTCGATGTAAACTAAAATCTTTGTATGTATCTTTCTTTCAGGGTTCAGATTGC 1303
consensus_14155#3 TTCTTGATGCAATATAAA--AAAAGGCGAATATTAGGGATGGCTTGATGATCTAAGG--- 328
consensus_14155#0 TTCTTGATGCAATATAAAAAAAGGCGAATAT-TAGGGATGGCTTGATGATCTAAGGCTCC 1315
consensus_14155#2 TTCTTGATGCAATATAAAAAAAGGCGAATAT-TAGGGATGGCTTGATGATCTAAGGCTCC 576
* * * ** **** ** * * * *
consensus_14155#1 TCCAC-CGTTTTTTGGGGGGATATTCTTGATG---CAATATAAAAAAAGGCGAA--TATT 1357
consensus_14155#3 ------------------------------------------------------------
consensus_14155#0 CGTACATGTTTTTTGCGAGAAAGTAGCTAGCGAGCCCAGCTAGAAACAATCCTTCTTCTT 1375
consensus_14155#2 CGTACATGTTTTTTGCGAGAAAGTAGCTAGCGAGCCCAGCTAGAAACAATCCTTCTTCTT 636
consensus_14155#1 AGGGAAAAAAAAAA---------------------------------------------- 1371
consensus_14155#3 ------------------------------------------------------------
consensus_14155#0 AAGATAATGAGCTAGGAACATCCTTTTATTTGTCCATCTGTAGTTAACTACAATGCCTTG 1435
consensus_14155#2 AAGATAATGAGCTAGGAACATCCTTTTATTTGTCCATCTGTAGTTAACTACAATGCCTTG 696
consensus_14155#1 ------------------------------------------------------------
consensus_14155#3 ------------------------------------------------------------
consensus_14155#0 GCATCAAGAATCTCCAATCAAGAACACGTTCACACTATATTGTGTCTAGCAGCAGCTAGC 1495
consensus_14155#2 GCATCAAGAATCTCCAATCAAGAACACGTTCACACTATAATGTGTCTAGCAGCAGCTAGC 756
consensus_14155#1 ------------------------------------------------------------
consensus_14155#3 ------------------------------------------------------------
consensus_14155#0 ATCATTATCCTAAAAAAATTTAGCTACATACATAAACATTTAAAAGAGTAAAGTGTATTG 1555
consensus_14155#2 ATCATTATCCTAAAAAAATTTAGCTACATACATAAACATTTAAAAGAGTAAAGTGTATTG 816
consensus_14155#1 -----------------------------------
consensus_14155#3 -----------------------------------
consensus_14155#0 CTGGCACTTAAATT--------------------- 1569
consensus_14155#2 CTGGCACTTAAATTTGTTCGTCTTCAAAAAAAAGA 851
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||