These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14160#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1357 fasta sequence [TGTGTCCGAAGCTTTTCTTCTCTACCAGCGGCAGCGGCGGCTGGTAGGGAGGAGGAGATCGCCACCAGATCGCCATGGAGACGCTGGCGAGCGCCATGCGGCGGGAGAACCGCCGCTTCAAGCCCCCCTCCTCCTCCTCCGCCTCCGCCTCCGCCGCCCTCTCCTCGGGGAGGGTCCCCCTCGTCATGGCCTTCCTCTCCTGCCTCGCGTGGCTCTACGTCGCCGGCCGGCTGTGGCAGGACGCGCAGACGCGGATGATCCTGTCTGGTCTCCTCGAGAAGAGCTCCGGCAATCTTCCGAAGGTGCTGTCGGTGGAGGACAAGCTGAGGAATCTAGGATGCATTGGAATTGGGAGGAAGATTGCGGAGGCAGAAATGGACCTTACAAAGGCGAAGAGCGAGGGGTATCTGTGGGGGAATGGAAC-TGCTACTGGTAGTTCTGACAAGAAGAAGCTCC-TTGCTGTTATTGGAGTTTACACTGGTTTTGGTTCCCGGCTCAAGAGGAACACCTTCCGTGGCTCATGGATGCCGAGAGGTGATGCTCTGAAGAAGCTTGAGGAGAAGGGTGTGGTCATTCGTTTTGTCATTGGTCGGAGTGCAAATCGAGGTGATAGCTTGGACCGCAACATCGATGATGAAAATCGTCGGACGAAAGATTTCTTGATTCTTG-AAAGTCATGAGGAAGCTG-CAGAGGAGTTACCAAGCAAAGTTAAGTTTTTCTTCAGTG-CAGCAATTGAAGCTTGGGACGCAGAGTTCTATGTGAAAGTCGATGACAACATTAACCTTGACCTGGCTGGATTAATTGAGATGCTTGAAGCCCGTCGAGGTAGCCAAGGACTGTACATGGGTTG-CATGAAATCAGGAGGTGTTGTAAGTGAAGAGGGTCAACAATGGTATGAACCTGAATGGTGGAAGTTTGGAGATTCAAAAACGTATTTTCGCCATGCTT-CCGGTGCTTTGTTTATCCTCTCTAACAATTTGGCACGCTACATTAACATAAACAGTGCATCGCTACAGAGCTATG-CCCATGATGACATATCAGTAGGTTCATGGATGATGGGGCTGAATACTACTTATGTTGATGACGACCGTTTGTGCTGCGGCAGTTCTAGACAAGAGAAAGTATGTTCCCACGCATGAGTTAGCAGCACGCATGGTTATGACGGTGGTGTCCTGATGAAGAGGTGACGCTGTATATTTTGCCATTTTGTATACACCAAGCGGCTTCTGGAATGAAAAATAGATACATCATTTCAAACGCTGCTTTATCCGATCAGTATACTTAAATACAAGTGTAGGGGAACTAGTTGACAAAAACTATAAAAGCGCTGAGCTTATTTTTGG-TGGAAAAAAAAAAA] [+] EMBL AK058356 [TGTGTCCGAAGCTTTTCTTCTCTACCAGCGGCAGCGGCGGCTGGTAGGGAGGAGGAGATCGCCACCAGATCGCCATGGAGACGCTGGCGAGCGCCATGCGGCGGGAGAACCGCCGCTTCAAGCCCCCCTCCTCCTCCTCCGCCTCCGCCTCCGCCGCCCTCTCCTCGGGGAGGGTCCCCCTCGTCATGGCCTTCCTCTCCTGCCTCGCGTGGCTCTACGTCGCCGGCCGGCTGTGGCAGGACGCGCAGACGCGGATGATCCTGTCTGGTCTCCTCGAGAAGAGCTCCGGCAATCTTCCGAAGGTGCTGTCGGTGGAGGACAAGCTGAGGAATCTAGGATGCATTGGAATTGGGAGGAAGATTGCGGAGGCAGAAATGGACCTTACAAAGGCGAAGAGCGAGGGGTATCTGTGGGGGAATGGAAC TGCTACTGGTAGTTCTGACAAGAAGAAGCTCC TTGCTGTTATTGGAGTTTACACTGGTTTTGGTTCCCGGCTCAAGAGGAACACCTTCCGTGGCTCATGGATGCCGAGAGGTGATGCTCTGAAGAAGCTTGAGGAGAAGGGTGTGGTCATTCGTTTTGTCATTGGTCGGAGTGCAAATCGAGGTGATAGCTTGGACCGCAACATCGATGATGAAAATCGTCGGACGAAAGATTTCTTGATTCTTG AAAGTCATGAGGAAGCTG CAGAGGAGTTACCAAGCAAAGTTAAGTTTTTCTTCAGTG CAGCAATTGAAGCTTGGGACGCAGAGTTCTATGTGAAAGTCGATGACAACATTAACCTTGACCTGGCTGGATTAATTGAGATGCTTGAAGCCCGTCGAGGTAGCCAAGGACTGTACATGGGTTG CATGAAATCAGGAGGTGTTGTAAGTGAAGAGGGTCAACAATGGTATGAACCTGAATGGTGGAAGTTTGGAGATTCAAAAACGTATTTTCGCCATGCTT CCGGTGCTTTGTTTATCCTCTCTAACAATTTGGCACGCTACATTAACATAAACAGTGCATCGCTACAGAGCTATG CCCATGATGACATATCAGTAGGTTCATGGATGATGGGGCTGAATACTACTTATGTTGATGACGACCGTTTGTGCTGCGGCAGTTCTAGACAAGAGAAAGTATGTTCCCACGCATGAGTTAGCAGCACGCATGGTTATGACGGTGGTGTCCTGATGAAGAGGTGACGCTGTATATTTTGCCATTTTGTATACACCAAGCGGCTTCTGGAATGAAAAGTAGATACATCATTTCAAACGCTGCTTTATCCGATCAGTATACTTAAATACAAGTGTAGGGGAACTAGTTGACAAAAACTATAAAAGCGCTGAGCTTATTTTTGG TGGA ] [+] EMBL AK102880 [ TTCTCTACCAGCGGCAGCGGCGGCTGGTAGGGAGGAGGAGATCGCCACCAGATCGCCATGGAGACGCTGGCGAGCGCCATGCGGCGGGAGAACCGCCGCTTCAAGCCCCCCTCCTCCTCCTCCGCCTCCGCCTCCGCCGCCCTCTCCTCGGGGAGGGTCCCCCTCGTCATGGCCTTCCTCTCCTGCCTCGCGTGGCTCTACGTCGCCGGCCGGCTGTGGCAGGACGCGCAGACGCGGATGATCCTGTCTGGTCTCCTCGAGAAGAGCTCCGGCAATCTTCCGAAGGTGCTGTCGGTGGAGGACAAGCTGAGGAATCTAGGATGCATTGGAATTGGGAGGAAGATTGCGGAGGCAGAAATGGACCTTACAAAGGCGAAGAGCGAGGGGTATCTGTGGGGGAATGGAAC TGCTACTGGTAGTTCTGACAAGAAGAAGCTCC TTGCTGTTATTGGAGTTTACACTGGTTTTGGTTCCCGGCTCAAGAGGAACACCTTCCGTGGCTCATGGATGCCGAGAGGTGATGCTCTGAAGAAGCTTGAGGAGAAGGGTGTGGTCATTCGTTTTGTCATTGGTCGGAGTGCAAATCGAGGTGATAGCTTGGACCGCAACATCGATGATGAAAATCGTCGGACGAAAGATTTCTTGATTCTTG AAAGTCATGAGGAAGCTG CAGAGGAGTTACCAAGCAAAGTTAAGTTTTTCTTCAGTG CAGCAATTGAAGCTTGGGACGCAGAGTTCTATGTGAAAGTCGATGACAACATTAACCTTGACCTGGCTGGATTAATTGAGATGCTTGAAGCCCGTCGAGGTAGCCAAGGACTGTACATGGGTTG CATGAAATCAGGAGGTGTTGTAAGTGAAGAGGGTCAACAATGGTATGAACCTGAATGGTGGAAGTTTGGAGATTCAAAAACGTATTTTCGCCATGCTT CCGGTGCTTTGTTTATCCTCTCTAACAATTTGGCACGCTACATTAACATAAACAGTGCATCGCTACAGAGCTATG CCCATGATGACATATCAGTAGGTTCATGGATGATGGGGCTGAATACTACTTATGTTGATGACGACCGTTTGTGCTGCGGCAGTTCTAGACAAGAGAAAGTATGTTCCCACGCATGAGTTAGCAGCACGCATGGTTATGACGGTGGTGTCCTGATGAAGAGGTGACGCTGTATATTTTGCCATTTTGTATACACCAAGCGGCTTCTGGAATGAAAAATAGATACATCATTTCAAACGCTGCTTTATCCGATCAGTATACTTAAATACAAGTGTAGGGGAACTAGTTGACAAAAACTATAAAAGCGCTGAGCTT ] [+] EMBL AU064550 [ gcangnCGGCTGGTAGGGAGGAGGAGATCGCCACCAGATCGCCATGGAGACGCTGGCGAGCGCCATGCGGCGGGAGAACCGCCGNTTCAAGCCCCCCTCCTCCTCCTCCGNCTCCGCCTCCGCCGCCCTCTCCTCGGGGAGGGTCCCCCTCGTCATGGCCTTCCTCTCCTGCCTCGCGTGGCTCTACGTCGCCGGCCGGCTGTGGCAGGACGCGCAGACGCGGATGATCCTGTCTGGTCTCCTCGAGAAGAGCTCCGGCAATCTTCCGAAGTTGCTGTCGGTGGAGG CAAGCTGAGGAATCTAGGATGCATTGGAATTGG ] [+] EMBL AU082535 [ CACCAGATCGCCATGGAGACGCTGGCGAGCGCCATGCGGCGGGAGAACCG CGTNTCAAGCCCCCCTCCTCCTCCTCCTGCTCCGCCTCCGCCGCCCTCTCCTCGGGGAGGGTCCCCCTCGTCATGGCCTTCCTCTCCTGCCTCGCGTGGCTCTACGTCGCCGGCCGGCTGTGGCAGGACGCGCAGACG GGATGATCCTGTCTGGTCTCCTCGAGAAGAGCTCCGGCAATCTTCCGAA GTGCTGTCGGTGGAGGACAAGCTGAGGAATCTAGGATGCATTGGAATTGGGAGGAAGATTGCGGAGGCAGAAATGGACCTTACAAANGCGAA AGCGANGGGTATCTGT GGGGAAT GAACTTGC ACTNGTAATTCTGACAANAAGAA CTCC TTGCTGTAATTGGAG TTACACTGGTTTTGG ] [+] EMBL OSS13223A [ nACCAGATCGCCATGGAGACGCTGGCGAGCGCCATGCGGCGGGAGAACCG CGTNTCAAGCCCCCCTCCTCCTCCTCCGCCTCCGCCTCCGCCGCCCTCTCCTCGGGGAGGGTCCCCCTCGTCATGGCCTTCCTCTCCTGCCTCGCGTGGCTCTACGTCGCCGGCCGGCTGTGGCAGGACGCGCAGACG GGATGATCCTGTCTGGTCTCCTCGAGAAGAGCTCCGGCAATCTTCCGAA GTGCTGTCGGTGGAGGACAAGCTGAGGAATCTAGGATGCATTGGAATTGGGAGGAAGATTGCGGAGGCAGAAATGGACCTTACAAAGGCGAAGAGCGAAGGGTATCTGTGGGGGAATGGAAC TGCTACTTGTAGTTCTGACAAGAAGAAGCTCCTTTGCTGTTATTNGAGTTTANACTG ] [+] EMBL OSA506739 [ CTGGCGAGCGCCATGCGGCGGGAGAACCGCCGCTTCAAGCCCCCCTCCTCCTCCTCCGCCTCCGCCTCCGCCGCCCTCTCCTCGGGGAGGGTCCCCCTCGTCATGGCCTTCCTCTCCTGCCTCGCGTGGCTCTACGTCGCCGGCCGGCTGTGGCAGGACGCGCAGACGCGGATGATCCTGTCTGGTCTCCTCGAGAAGAGCTCCGGCAATCTTCCGAAGGTGCTGTCGGTGGAGGACAAGCTGAGGAATCTAGGATGCATTGGAATTGGGAGGAAGATTGCGGAGGCAGAAATGGACCTTACAAAGGCGAAGAGCGAGGGGTATCTGTGGGGGAATGGAAC TGCTACTGGTAGTTCTGACAAGAAGAAGCTCC TTGCTGTTATTGGAGTTTACACTGGTTTTGGTTCCCGGCTCAAGAGGAACACCTTCCGTGGCTCATGGATGCCGAGAGGTGATGCTCTGAAGAAGCTTGAGGAGAAGGGTGTGGTCATTCGTTTTGTCATTGGTCGGAGTGCAAATCGAGGTGATAGCTTGGACCGCAACATCGATGATGAAAATCGTCGGACGAAAGATTTCTTGATTCTTG AAAGTCATGAGGAAGCTG CAGAGGAGTTACCAAGCAAAGTTAAGTTTTTCTTCAGTG CAGCAATTGAAGCTTGGGACGCAGAGTTCTATGTGAAAGTCGATGACAACATTAACCTTGACCTGGCTGGATTAATTGAGATGCTTGAAGCCCGTCGAGGTAGCCAAGGACTGTACATGGGTTG CATGAAATCAGGAGGTGTTGTAAGTGAAGAGGGTCAACAATGGTATGAACCTGAATGGTGGAAGTTTGGAGATTCAAAAACGTATTTTCGCCATGCTT CCGGTGCTTTGTTTATCCTCTCTAACAATTTGGCACGCTACATTAACATAAACAGTGCATCGCTACAGAGCTATG CCCATGATGACATATCAGTAGGTTCATGGATGATGGGGCTGAATACTACTTATGTTGATGACGACCGTTTGTGCTGCGGCAGTTCTAGACAAGAGAAAGTATGTTC ] [+] EMBL CA998031 [ TGTGGCAGGACGCGCATACGCGGATGATCCTGTCTGGTCTCCTCGAGAAGAGCTCCGGCAATCTTCCGAAGGTGCTGTCTGTGGAGGACAAGCTGAGGAATCTAGGATGCATTGGAATTGGGAGGAAGATTGCGGAGGCACAAATGGACCTTACAAAGGCGAATAGCGAGGGGTATCTGTGGGGGAATGGAAC TGCTACTGGTAGTTCTGACAAGAATAAGCTCC TTGCTGTTATTGGAGTTTACACTGGTTTTGGTTCCCGGCTCAAGAAGAACACCTTCCGT ] [+] EMBL CB000293 [ TCTGACAAGAAGAAGCTCC TTGCTGTTATTGGCTTTTACACTGGTTTTGGTTCCCGGCTCAAGAGGAACACCTTCCGTGGCTCATGGATGCCGAGAGGTGATGCTCTGAAGAAGCTTGAGGAGAAGGGTGTGGTCATTCGTTTTGTCATTGGTCGGAGTGCAAATCGAGGTGATAGCTTGGACCGCAACATCGATGATGAAAATCGTCGGACGAAAGATTTCTTGATTCTTG AAAGTCATGAGGAAGCTG CAGAGGAGTTACCAAGCAAAGTTAAGTTTTTCTTCAGTG CAGCAATTGAAGCTTGGGACGCAGAGTTCTATGTGAAAGTCGATGACAACATTAACCTTGACCTGGCTGGATTAATTGAGATGCTTGAAGCCCGTCGAGGTAGCCAAGGACTGTACATGGGTTG CATGAAATCAGGAGGTGTTGTAAGTGAAGAGGGTCAACAATGGTATGAACCTGAATGGTGGAAGTTTGGAGATTCAAAAACGTATTTTCGCCATGCTT CCGGTGCTTTGTTTATCCTCTCTAACAATTTGGCACGCTACATTAACATAAACAGTGCATCGCTACAGAGCTATG CCCATGATGACATATCAGTAGGTTCATGGATGATGGGGCTGAATACTACTTATGTTGATGACGACCGTTTGTGCTGCGGCAGTTCTAGACAAGAGAAAGTATGTTCCCACGCATGAGTTAGCAGCACGCATGGTTATGACGGTGGTGTCCTGATGAAGAGGTGACGCTGTATATTTTGCCCTTTTGTATACACCAAGCGGCTTCTGGGATGAAAAATAAATACATCATTTCAAACGCTGCTTTATCCGATCAGTATAC ] [+] EMBL AU029621 [ cCTTGAAAAGTCTTGAGGAAGCTGCCAGAGGAGTTACCAAGCAAANTTAAGTTTTNCTTCAGTGCCAGC ATTGAAGCTTGGGACGCAGAGTTCTATGTGAAAGTCGATGACAACATTAACCTGGACCTGGCTGGATTAATTGAGATGCTTGAAGCCCGTCGAGGTAGCCAAGGACTGTACATGGGTTGCCATGAAATCAGGAGGTGTTGTAAGTGAAGAGGGTCAACAATGGTATGAACCTGAATGGTGGAAGTTTGGAGATTCAAAAACGTATTTTCGCCATGCTTCCCGGTGCCTTGTTTATCCTCTCTAACAATTTGGCACGCTACATTAACATAAACAGTGCATCGCTACAGAGCTATGCCCCATGATGACATATCAGTAGGTTCATGGATGATGGGGCTGAATACTACTTATGTTGATGACGACCGTTTGTGCTGCGGCAGTTCTAGACAAGAGAAAGTATGTTCCCACGCATGAGTTAGCAGCACGCATGGTTATGACGGTGGTGTCCTGATGAAGAGGTGACGCTGTATATTTTGCCATTTTGTATACACCAAGCGGCTTCTGGAATGAAAAATAGATACATCATTTCAAACGCTGCTTTATCCGATCAGTATACTTAAATACAAGTGTAGGGGAACTAGTTGACAAAAACTATAAAAGCGCTGAGCTTATTTTTGG TGGAAAAAAAAAAA] [+] EMBL BI805376 [ CACGCATGAGTTAGCAGCACGCATGGTTATGACGGTGGTGTCCTGATGAAGAGGTGACGCTGTATATTTTGCCATTTTGTATACACC AGCGGCTTCTGGAATGAAAAATAGATACATCATTTC AACGCTGCTTTATCCGATCAGTATACTTAAATACAAGTGTAGGGGAACTAGTTGACCCAAACTATAAAAGCGCTGAGCTTATTTTTGGCTGGAAAAAAA ] consensusID : consensus_14160#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 876 fasta sequence [TGTCATTGGTCGGAGTGCAAATCGAGGTGATAGCTTGGACCGCAACATCGATGATGAAAATCGTCGGACGAAAGATTTCTTGATTCTTGAAAGTCATGAGGAAGCTGCAGAGGAGTTACCAAGCAAAGTTAAGTTTTTCTTCAGTGCAGCAATTGAAGCTTGGGACGCAGAGTTCTATGTGAAAGTCGATGACAACATTAACCTTGACCTGGCTGGATTAATTGAGATGCTTGAAGCCCGTCGAGGTAGCCAAGGACTGTACATGGGTTGCATGAAATCAGGAGGTGTTGTAAGTGAAGAGGGTCAACAATGGTATGAACCTGAATGGTGGAAGTTTGGAGATTCAAAAACGTATTTTCGCCATGCTTCCGGTGCTTTGTTTATCCTCTCTAACAATTTGGCACGCTACATTAACATAAACAGTGCATCGCTACAGAGCTATGCCCATGATGACATATCAGTAGGTTCATGGATGATGGGGCTGAATACTACTTATGTTGATGACGACCGTTTGTGCTGCGGCAGTTCTAGACAAGAGAAAGTATGTTCCCACGCATGAGTTAGCAGCACGCATGGTTATGACGGTGGTGTCCTGATGAAGAGGTGACGCTGTATATTTTGCCATTTTGTATACACCAAGCGGCTTCTGGAATGAAAAATAGATACATCATTTCAAACGCTGCTTTATCCGATCAGTATACTTAAATACAAGTGTAGGGGAACTAGTTGACAAAAACTATAAAAGCGCTGAGCTTATTTTTGGTGGAGCTTCCTG-TTGACAAAAAAAAGAAAAGTCGAAACCAAATTCAGGGTGATAGATGAACTTCTGTTCGAAGTTTAGGGGAAAAAAAAAAAAAAAAAAAAAACTGAGACTAG] [-] EMBL CB683276 [TGTCATTGGTCGGAGTGCAAATCGAGGTGATAGCTTGGACCGCAACATCGATGATGAAAATCGTCGGACGAAAGATTTCTTGATTCTTGAAAGTCATGAGGAAGCTGCAGAGGAGTTACCAAGCAAAGTTAAGTTTTTCTTCAGTGCAGCAATTGAAGCTTGGGACGCAGAGTTCTATGTGAAAGTCGATGACAACATTAACCTTGACCTGGCTGGATTAATTGAGATGCTTGAAGCCCGTCGAGGTAGCCAAGGACTGTACATGGGTTGCATGAAATCAGGAGGTGTTGTAAGTGAAGAGGGTCAACAATGGTATGAACCTGAATGGTGGAAGTTTGGAGATTCAAAAACGTATTTTCGCCATGCTTCCGGTGCTTTGTTTATCCTCTCTAACAATTTGGCACGCTACATTAACATAAACAGTGCATCGCTACAGAGCTATGCCCATGATGACATATCAGTAGGTTCATGGATGATGGGGCTGAATACTACTTATGTTGATGACGACCGTTTGTGCTGCGGCAGTTCTAGACAAGAGAAAGTATGTTCCCACGCATGAGTTAGCAGCACGCATGGTTATGACGGTGGTGTCCTGATGAAGAGGTGACGCTGTATATTTTGCCATTTTGTATACACCAAGCGGCTTCTGGAATGAAAAATAGATACATCATTTCAAACGCTGCTTTATCCGATCAGTATACTTAAATACAAGTGTAGGGGAACTAGTTGACAAAAACTATAAAAGCGCTGAGCTTATTTTTGGTGGAGCTTCCTG TTGACAAAAAAAAGA ] [-] EMBL CF304956 [ gTGCTTTATCCGATCAGTATACTTAAATACAAGTGTAGGGGAACTAGTTGACAAAAACTATAAAAGCGCTGAGCTTATTTTTGGTGGAGCTTCCTGTTTGACATATTTGTCGAAAGTCGAAACCAAATTCAGGGTGATAGATGAACTTCTGTTCGAAGTTTAGGGGAAAAAAAAAAAAAAAAAAAAAACTGAGACTAG] consensusID : consensus_14160#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 378 fasta sequence [AGATCGCCATGGAGACGCTGGCGAGCGCCATGCGGCGGGAGAACCGCGTNTCAAGCCCCCCTCCTCCTCCTCCGCCTCCGNCTCCGCCGCCCTCTCCTCGGGGAGGGTCCCCCTCGTCATGGCCTTCCTCTCCTGCCTCGCGTGGCTCTACGTCGCCGGCCGGCTGTGGCAGGACGCGCAGACGGGAATGATCCTGTCTGGTCTCCTCGAGAAGAGCTCCGGCAATCTTCCGAAGTGCTTGTCGGTGGAGGGCAAGCTNAGGAATCTAGGATGCATTTGGAATTGGGAAGGAAGATTTCGGGAGGCAAGAAATTGGACCTTANAAAGGCGAAAGAGCCAAAGGGGTATNTTTTGGGGGGGANTTGAACCTCCTANCTT] [+] EMBL C28096 [AGATCGCCATGGAGACGCTGGCGAGCGCCATGCGGCGGGAGAACCGCGTNTCAAGCCCCCCTCCTCCTCCTCCGCCTCCGNCTCCGCCGCCCTCTCCTCGGGGAGGGTCCCCCTCGTCATGGCCTTCCTCTCCTGCCTCGCGTGGCTCTACGTCGCCGGCCGGCTGTGGCAGGACGCGCAGACGGGAATGATCCTGTCTGGTCTCCTCGAGAAGAGCTCCGGCAATCTTCCGAAGTGCTTGTCGGTGGAGGGCAAGCTNAGGAATCTAGGATGCATTTGGAATTGGGAAGGAAGATTTCGGGAGGCAAGAAATTGGACCTTANAAAGGCGAAAGAGCCAAAGGGGTATNTTTTGGGGGGGANTTGAACCTCCTANCTT] consensusID : consensus_14160#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 365 fasta sequence [GCCCGTCGAGGTAGCCAAGGACTGTACATGGGTTGCATGAAATCAGGAGGTGTTGTAAGTGAAGAGGGTCAACAATGGTATGAACCTGAATGGTGGAAGTTTGGAGATTCAAAAACGTATTTTCGCCATGCTTCCGGTGCTTTGTTTATCCTCTCTAACAATTTGGCACGCTACATTAACATAAACAGTGCATCGCTACAGAGCTATGCCCATGATGACATATCAGTAGGTTCATGGATGATGGGGCTGAATACTACTTATGTTGATGACGACCGTTTGTGCTGCGGCAGTTCTAGACAAGGTAAAAGCTCGCCTCCTGAATCCATTATCCTACCCTGGACAATTCATGGCGGTACTTCTATGCT] [+] EMBL OSA506740 [GCCCGTCGAGGTAGCCAAGGACTGTACATGGGTTGCATGAAATCAGGAGGTGTTGTAAGTGAAGAGGGTCAACAATGGTATGAACCTGAATGGTGGAAGTTTGGAGATTCAAAAACGTATTTTCGCCATGCTTCCGGTGCTTTGTTTATCCTCTCTAACAATTTGGCACGCTACATTAACATAAACAGTGCATCGCTACAGAGCTATGCCCATGATGACATATCAGTAGGTTCATGGATGATGGGGCTGAATACTACTTATGTTGATGACGACCGTTTGTGCTGCGGCAGTTCTAGACAAGGTAAAAGCTCGCCTCCTGAATCCATTATCCTACCCTGGACAATTCATGGCGGTACTTCTATGCT] consensusID : consensus_14160#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 269 fasta sequence [GATCGCCATGGAGACGCTGGCGAGCCCATTGNGCGNGNAGAACCTCTTCNANTGCCCCCCTCCTCCTCCTCCTGCTCCGCCTCCGCCGCCCTCTCCTCGGGGAGGGTCCCCCTCGTCATNGCCTTCCTCTCCTGCCTCGCGTGGCTCTACGTCGCCGGCCGNTGTNGCAGGACGCGCAGACGGANTGATCCTGTCTGGTCTCCTCNAGAAGAGCTCCGGCAATCTTCCGAAGTGCTGTCGGTNGAGGACAAGCTGAGGAATCTAGGATG] [+] EMBL OSS15223A [GATCGCCATGGAGACGCTGGCGAGCCCATTGNGCGNGNAGAACCTCTTCNANTGCCCCCCTCCTCCTCCTCCTGCTCCGCCTCCGCCGCCCTCTCCTCGGGGAGGGTCCCCCTCGTCATNGCCTTCCTCTCCTGCCTCGCGTGGCTCTACGTCGCCGGCCGNTGTNGCAGGACGCGCAGACGGANTGATCCTGTCTGGTCTCCTCNAGAAGAGCTCCGGCAATCTTCCGAAGTGCTGTCGGTNGAGGACAAGCTGAGGAATCTAGGATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14160#2 ------------------------------------------------------------ consensus_14160#4 ------------------------------------------------------------ consensus_14160#0 ------------------------------------------------------------ consensus_14160#1 TGTCATTGGTCGGAGTGCAAATCGAGGTGATAGCTTGGACCGCAACATCGATGATGAAAA 60 consensus_14160#3 ------------------------------------------------------------ consensus_14160#2 ------------------------------------------------------------ consensus_14160#4 ------------------------------------------------------------ consensus_14160#0 ------------------------------------------------------------ consensus_14160#1 TCGTCGGACGAAAGATTTCTTGATTCTTGAAAGTCATGAGGAAGCTGCAGAGGAGTTACC 120 consensus_14160#3 ------------------------------------------------------------ consensus_14160#2 ------------------------------------------------------------ consensus_14160#4 ------------------------------------------------------------ consensus_14160#0 ---------------------------------------------------------TGT 3 consensus_14160#1 AAGCAAAGTTAAGTTTTTCTTCAGTGCAGCAATTGAAGCTTGGGACGCAGAGTTCTATGT 180 consensus_14160#3 ------------------------------------------------------------ consensus_14160#2 ------------------------------------------------------------ consensus_14160#4 ------------------------------------------------------------ consensus_14160#0 GTCCGAAGCTTTTCTTCTCTACCAGCGGCAGCGGCGGCTGGTAGGGAGGAGGAGATCGCC 63 consensus_14160#1 GAAAGTCGATGACAACATTAACCTTGACCTGGCTGGATTAATTGAGATGCTTGAAGCCCG 240 consensus_14160#3 -------------------------------------------------------GCCCG 5 consensus_14160#2 ---AGATCGCCATGGAGACGCTGGCGAGCGCCATGCGGCGGGAGAACCGC-GTNTCAAGC 56 consensus_14160#4 ----GATCGCCATGGAGACGCTGGCGAGCCCATTGNGCGNGNAGAACCTC-TTCNANTGC 55 consensus_14160#0 ACCAGATCGCCATGGAGACGCTGGCGAGCGCCATGCGGCGGGAGAACCGCCGCTTCAAGC 123 consensus_14160#1 TCGAGGTAGCCAAGGACTGTACATGGGTTGCATGAAATCAGGAGGTGTTGTAAGTGAAGA 300 consensus_14160#3 TCGAGGTAGCCAAGGACTGTACATGGGTTGCATGAAATCAGGAGGTGTTGTAAGTGAAGA 65 * * **** *** * * * ** * consensus_14160#2 CCCCCTCCTCCTCCTCCGCCTCCGNCTCCGCCGCCCTCTCCTCGGGGAGGGTCCCCCTCG 116 consensus_14160#4 CCCCCTCCTCCTCCTCCTGCTCCGCCTCCGCCGCCCTCTCCTCGGGGAGGGTCCCCCTCG 115 consensus_14160#0 CCCCCTCCTCCTCCTCCGCCTCCGCCTCCGCCGCCCTCTCCTCGGGGAGGGTCCCCCTCG 183 consensus_14160#1 GGGTCAACAATGGTATGAACCTGAATGGTGGAAGTTTGGAGATTCAAAAACGTATTTTCG 360 consensus_14160#3 GGGTCAACAATGGTATGAACCTGAATGGTGGAAGTTTGGAGATTCAAAAACGTATTTTCG 125 * * * * * * *** consensus_14160#2 TCATGGCCTTCCTCTCCTGCCTCGCGTGGCT--CTACGTCGCCGGCCG-GCTGTGGCAGG 173 consensus_14160#4 TCATNGCCTTCCTCTCCTGCCTCGCGTGGCT--CTACGTCGCCGGCCG-N-TGTNGCAGG 171 consensus_14160#0 TCATGGCCTTCCTCTCCTGCCTCGCGTGGCT--CTACGTCGCCGGCCG-GCTGTGGCAGG 240 consensus_14160#1 CCATGCTTCCGGTGCTTTGTTTATCCTCTCTAACAATTTGGCACGCTACATTAACATAAA 420 consensus_14160#3 CCATGCTTCCGGTGCTTTGTTTATCCTCTCTAACAATTTGGCACGCTACATTAACATAAA 185 *** * ** * * * ** * * * ** ** * * consensus_14160#2 ACGCGCAG----ACGGGAATGATCCTGTCTGGTCTCCTCGAGAAGAGCTCCGGCAATCTT 229 consensus_14160#4 ACGCGCAG----ACGG-ANTGATCCTGTCTGGTCTCCTCNAGAAGAGCTCCGGCAATCTT 226 consensus_14160#0 ACGCGCAG----ACGCGGATGATCCTGTCTGGTCTCCTCGAGAAGAGCTCCGGCAATCTT 296 consensus_14160#1 CAGTGCATCGCTACAGAGCTATGCCCATGATGACATATCAGTAGGTTCATGGATGATGGG 480 consensus_14160#3 CAGTGCATCGCTACAGAGCTATGCCCATGATGACATATCAGTAGGTTCATGGATGATGGG 245 * *** ** * ** * * * ** * * * * ** consensus_14160#2 CCGAAGTGCTTGTCG-GTGGAGGGCAAGCTNAGGAATCTAGGATGCATTTGGAATTGGGA 288 consensus_14160#4 CCGAAGTGCT-GTCG-GTNGAGGACAAGCTGAGGAATCTAGGATG--------------- 269 consensus_14160#0 CCGAAGGTGCTGTCG-GTGGAGGACAAGCTGAGGAATCTAGGATGCATTGGAATT--GGG 353 consensus_14160#1 GCTGAATACTACTTATGTTGATGACGACCGTTTGTG-CTGCGGCAGTTCTAGACAAGAGA 539 consensus_14160#3 GCTGAATACTACTTATGTTGATGACGACCGTTTGTG-CTGCGGCAGTTCTAGACAAGGTA 304 * * * ** ** * * * * * ** * consensus_14160#2 AGGAAGATTTCGGGAGGCAAGAAATTGGACCTTANAAAGGCGAAAGAGCCAAAGGGGTAT 348 consensus_14160#4 ------------------------------------------------------------ consensus_14160#0 AGGAAGATTGCGGAGGCAGAAA---TGGACCTTACAAAGGCGAA-GAGCGAGGGGTATCT 409 consensus_14160#1 AAGTATGTTCCCACGCATGAGTTAGC--AGCACGCATGGTT-ATGACGGTGGTGTCCTGA 596 consensus_14160#3 AAAGCTCGCCTCCTGAATCCATTATCCTACCCTGGACAATTCATGGCGGTACTTCTATGC 364 consensus_14160#2 NTTTTGGGGGGGANTTGAACCTCCTANCTT------------------------------ 378 consensus_14160#4 ------------------------------------------------------------ consensus_14160#0 GTGGGGGAATGGAACTGCTACTGGTAGTTCTGACAAGAAGAAGCTCCTTGCTGTTATTGG 469 consensus_14160#1 TGAAGAGGTGACGCTGTATATTTTGCCATTTTGTATACACCAAGCGGCTTCTGGAATGAA 656 consensus_14160#3 T----------------------------------------------------------- 365 consensus_14160#2 ------------------------------------------------------------ consensus_14160#4 ------------------------------------------------------------ consensus_14160#0 AGTTTACACTGGTTTTGGTTCCCGGCTCAAGAGGAACACCTTCCGTGGCTCATGGATGCC 529 consensus_14160#1 AAATAGATACATCATTTCAAACGCTGCTTTATCCGATCAGTATACTTAAATACAAGTGTA 716 consensus_14160#3 ------------------------------------------------------------ consensus_14160#2 ------------------------------------------------------------ consensus_14160#4 ------------------------------------------------------------ consensus_14160#0 GAGAGGTGATGCTCTGAAGAAGCTTGAGGAGAAGGGTGTGGTCATTCGTTTTGTCATTGG 589 consensus_14160#1 GGGGAACTAGTTGACAAAAACTATAAAAGCGCTGAGCTTATTTTTGGTGGAGCTTCCTGT 776 consensus_14160#3 ------------------------------------------------------------ consensus_14160#2 ------------------------------------------------------------ consensus_14160#4 ------------------------------------------------------------ consensus_14160#0 TCGGAGTGCAAATCGAGGTGATAGCTTGGACCGCAACATCGATGATGAAAATCGTCGGAC 649 consensus_14160#1 TGACAAAAAAAAGAAAAGTCGAAACCAAATTCAGGGTGATAGATGAACTTCTGTTCGAAG 836 consensus_14160#3 ------------------------------------------------------------ consensus_14160#2 ------------------------------------------------------------ consensus_14160#4 ------------------------------------------------------------ consensus_14160#0 GAAAGATTTCTTGATTCTTGAAAGTCATGAGGAAGCTGCAGAGGAGTTACCAAGCAAAGT 709 consensus_14160#1 TTTAGGGGAAAAAAAAAAAAAAAAAAAAAACTGAGACTAG-------------------- 876 consensus_14160#3 ------------------------------------------------------------ consensus_14160#2 ------------------------------------------------------------ consensus_14160#4 ------------------------------------------------------------ consensus_14160#0 TAAGTTTTTCTTCAGTGCAGCAATTGAAGCTTGGGACGCAGAGTTCTATGTGAAAGTCGA 769 consensus_14160#1 ------------------------------------------------------------ consensus_14160#3 ------------------------------------------------------------ consensus_14160#2 ------------------------------------------------------------ consensus_14160#4 ------------------------------------------------------------ consensus_14160#0 TGACAACATTAACCTTGACCTGGCTGGATTAATTGAGATGCTTGAAGCCCGTCGAGGTAG 829 consensus_14160#1 ------------------------------------------------------------ consensus_14160#3 ------------------------------------------------------------ consensus_14160#2 ------------------------------------------------------------ consensus_14160#4 ------------------------------------------------------------ consensus_14160#0 CCAAGGACTGTACATGGGTTGCATGAAATCAGGAGGTGTTGTAAGTGAAGAGGGTCAACA 889 consensus_14160#1 ------------------------------------------------------------ consensus_14160#3 ------------------------------------------------------------ consensus_14160#2 ------------------------------------------------------------ consensus_14160#4 ------------------------------------------------------------ consensus_14160#0 ATGGTATGAACCTGAATGGTGGAAGTTTGGAGATTCAAAAACGTATTTTCGCCATGCTTC 949 consensus_14160#1 ------------------------------------------------------------ consensus_14160#3 ------------------------------------------------------------ consensus_14160#2 ------------------------------------------------------------ consensus_14160#4 ------------------------------------------------------------ consensus_14160#0 CGGTGCTTTGTTTATCCTCTCTAACAATTTGGCACGCTACATTAACATAAACAGTGCATC 1009 consensus_14160#1 ------------------------------------------------------------ consensus_14160#3 ------------------------------------------------------------ consensus_14160#2 ------------------------------------------------------------ consensus_14160#4 ------------------------------------------------------------ consensus_14160#0 GCTACAGAGCTATGCCCATGATGACATATCAGTAGGTTCATGGATGATGGGGCTGAATAC 1069 consensus_14160#1 ------------------------------------------------------------ consensus_14160#3 ------------------------------------------------------------ consensus_14160#2 ------------------------------------------------------------ consensus_14160#4 ------------------------------------------------------------ consensus_14160#0 TACTTATGTTGATGACGACCGTTTGTGCTGCGGCAGTTCTAGACAAGAGAAAGTATGTTC 1129 consensus_14160#1 ------------------------------------------------------------ consensus_14160#3 ------------------------------------------------------------ consensus_14160#2 ------------------------------------------------------------ consensus_14160#4 ------------------------------------------------------------ consensus_14160#0 CCACGCATGAGTTAGCAGCACGCATGGTTATGACGGTGGTGTCCTGATGAAGAGGTGACG 1189 consensus_14160#1 ------------------------------------------------------------ consensus_14160#3 ------------------------------------------------------------ consensus_14160#2 ------------------------------------------------------------ consensus_14160#4 ------------------------------------------------------------ consensus_14160#0 CTGTATATTTTGCCATTTTGTATACACCAAGCGGCTTCTGGAATGAAAAATAGATACATC 1249 consensus_14160#1 ------------------------------------------------------------ consensus_14160#3 ------------------------------------------------------------ consensus_14160#2 ------------------------------------------------------------ consensus_14160#4 ------------------------------------------------------------ consensus_14160#0 ATTTCAAACGCTGCTTTATCCGATCAGTATACTTAAATACAAGTGTAGGGGAACTAGTTG 1309 consensus_14160#1 ------------------------------------------------------------ consensus_14160#3 ------------------------------------------------------------ consensus_14160#2 ------------------------------------------------ consensus_14160#4 ------------------------------------------------ consensus_14160#0 ACAAAAACTATAAAAGCGCTGAGCTTATTTTTGGTGGAAAAAAAAAAA 1357 consensus_14160#1 ------------------------------------------------ consensus_14160#3 ------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||